Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049972.t1 | AES79080.2 | 73.2 | 220 | 26 | 5 | 1 | 193 | 166 | 379 | 5.70E-73 | 284.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049972.t1 | Q9C7R6 | 67.6 | 111 | 31 | 2 | 142 | 252 | 621 | 726 | 1.3e-30 | 134.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049972.t1 | G7L051 | 73.2 | 220 | 26 | 5 | 1 | 193 | 166 | 379 | 4.1e-73 | 284.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049972 | MS.gene29383 | 0.827554 | 1.47E-54 | -1.69E-46 |
| MS.gene049972 | MS.gene62436 | 0.841347 | 5.02E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049972.t1 | MTR_7g055620 | 73.182 | 220 | 26 | 5 | 1 | 193 | 166 | 379 | 6.85e-103 | 304 |
| MS.gene049972.t1 | MTR_2g018010 | 92.857 | 112 | 8 | 0 | 142 | 253 | 609 | 720 | 2.28e-63 | 211 |
| MS.gene049972.t1 | MTR_3g109972 | 90.625 | 96 | 9 | 0 | 144 | 239 | 1 | 96 | 7.72e-55 | 172 |
| MS.gene049972.t1 | MTR_3g110015 | 95.588 | 68 | 3 | 0 | 1 | 68 | 1 | 68 | 2.53e-40 | 134 |
| MS.gene049972.t1 | MTR_3g109978 | 95.588 | 68 | 3 | 0 | 1 | 68 | 92 | 159 | 8.98e-40 | 136 |
| MS.gene049972.t1 | MTR_5g096820 | 82.192 | 73 | 10 | 1 | 71 | 143 | 120 | 189 | 7.93e-34 | 129 |
| MS.gene049972.t1 | MTR_5g096820 | 82.192 | 73 | 10 | 1 | 71 | 143 | 120 | 189 | 9.84e-34 | 129 |
| MS.gene049972.t1 | MTR_8g096950 | 82.857 | 70 | 12 | 0 | 1 | 70 | 1 | 70 | 1.34e-32 | 120 |
| MS.gene049972.t1 | MTR_1g052515 | 58.571 | 70 | 26 | 1 | 74 | 143 | 111 | 177 | 5.51e-19 | 86.3 |
| MS.gene049972.t1 | MTR_7g091880 | 52.857 | 70 | 30 | 1 | 74 | 143 | 115 | 181 | 2.24e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049972.t1 | AT1G29340 | 67.568 | 111 | 31 | 2 | 142 | 252 | 621 | 726 | 3.37e-39 | 144 |
| MS.gene049972.t1 | AT1G55740 | 58.333 | 72 | 27 | 1 | 72 | 143 | 114 | 182 | 2.68e-22 | 95.9 |
| MS.gene049972.t1 | AT3G57520 | 54.167 | 72 | 30 | 1 | 72 | 143 | 114 | 182 | 5.73e-18 | 83.2 |
| MS.gene049972.t1 | AT3G57520 | 54.167 | 72 | 30 | 1 | 72 | 143 | 114 | 182 | 6.08e-18 | 83.2 |
| MS.gene049972.t1 | AT3G57520 | 54.167 | 72 | 30 | 1 | 72 | 143 | 114 | 182 | 6.27e-18 | 83.2 |
| MS.gene049972.t1 | AT5G20250 | 45.312 | 64 | 35 | 0 | 74 | 137 | 217 | 280 | 1.36e-13 | 70.5 |
| MS.gene049972.t1 | AT5G20250 | 45.312 | 64 | 35 | 0 | 74 | 137 | 122 | 185 | 2.03e-13 | 70.1 |
| MS.gene049972.t1 | AT5G20250 | 45.312 | 64 | 35 | 0 | 74 | 137 | 122 | 185 | 2.03e-13 | 70.1 |
| MS.gene049972.t1 | AT5G20250 | 45.312 | 64 | 35 | 0 | 74 | 137 | 122 | 185 | 2.03e-13 | 70.1 |
Find 67 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACTCATTTGGTGTTTAT+TGG | 0.178805 | 5.3:-52264503 | MS.gene049972:CDS |
| GGACTCATTTGGTGTTTATT+GGG | 0.187135 | 5.3:-52264502 | MS.gene049972:CDS |
| TCTCTACATTATGGTGTATT+AGG | 0.247651 | 5.3:-52263938 | MS.gene049972:CDS |
| AGATTTCAGGGCTGTTCTTC+AGG | 0.254721 | 5.3:-52264749 | MS.gene049972:CDS |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 5.3:+52265673 | None:intergenic |
| CTTCAAACCCTACTATTTAC+CGG | 0.331149 | 5.3:-52264025 | MS.gene049972:CDS |
| CATTTGGTGTTTATTGGGGC+TGG | 0.372723 | 5.3:-52264497 | MS.gene049972:CDS |
| GCTTTGTCCCGGTAAATAGT+AGG | 0.385439 | 5.3:+52264017 | None:intergenic |
| TGCAATTGAAAGGGCGGTTA+AGG | 0.401505 | 5.3:-52264068 | MS.gene049972:CDS |
| GAAAATGCATCTCTACATTA+TGG | 0.412312 | 5.3:-52263947 | MS.gene049972:CDS |
| GTATTATACCACTATATTAC+AGG | 0.417054 | 5.3:+52263824 | None:intergenic |
| CTAGCAATTCAGCTCAAACT+AGG | 0.421052 | 5.3:-52263898 | MS.gene049972:CDS |
| GGAATTTGATGGGACTCATT+TGG | 0.432327 | 5.3:-52264513 | MS.gene049972:CDS |
| ATGCGTTGTGGAACACCAAC+GGG | 0.433508 | 5.3:-52264145 | MS.gene049972:CDS |
| GTTAAGGCACCAACTATTGC+CGG | 0.433899 | 5.3:-52264052 | MS.gene049972:CDS |
| GCTGCAAATGCTTCATCAAA+TGG | 0.435679 | 5.3:-52265655 | MS.gene049972:CDS |
| GCATTTGTCATAACTTCATA+AGG | 0.438606 | 5.3:+52264467 | None:intergenic |
| TAGTAGGGTTTGAAGTAATC+CGG | 0.457922 | 5.3:+52264033 | None:intergenic |
| TTGTGGCGGAAAAGCTAGAT+AGG | 0.459328 | 5.3:-52265768 | MS.gene049972:CDS |
| AAGCACATTTGAAATGTTTG+TGG | 0.469159 | 5.3:-52265785 | None:intergenic |
| GATTTCAGGGCTGTTCTTCA+GGG | 0.470284 | 5.3:-52264748 | MS.gene049972:CDS |
| CTGAAATCTCCTTCCAAAAG+TGG | 0.478814 | 5.3:+52264763 | None:intergenic |
| AGGGATTCAAGCTTTGCTGC+AGG | 0.485529 | 5.3:-52263878 | MS.gene049972:CDS |
| AGAATTGCGTCGAGCAAAGT+TGG | 0.491272 | 5.3:-52265706 | MS.gene049972:CDS |
| TTTGTTCAGGACTATTGAGT+CGG | 0.492898 | 5.3:-52264238 | MS.gene049972:intron |
| CAGCATTGCTCGAGTTATGC+CGG | 0.494015 | 5.3:-52264105 | MS.gene049972:CDS |
| CTTTGTCCCGGTAAATAGTA+GGG | 0.497495 | 5.3:+52264018 | None:intergenic |
| TTCAAACCCTACTATTTACC+GGG | 0.497622 | 5.3:-52264024 | MS.gene049972:CDS |
| TGAAGTAATCCGGCAATAGT+TGG | 0.499205 | 5.3:+52264043 | None:intergenic |
| ATTAAGATTTGTGTTGAAAG+TGG | 0.499712 | 5.3:-52264709 | MS.gene049972:intron |
| TTGTTCAGGACTATTGAGTC+GGG | 0.501991 | 5.3:-52264237 | MS.gene049972:intron |
| TCTCTGTACCTGTAATATAG+TGG | 0.503843 | 5.3:-52263832 | None:intergenic |
| GACTCATTTGGTGTTTATTG+GGG | 0.511611 | 5.3:-52264501 | MS.gene049972:CDS |
| GAGGTTCAGCTGCAATTGAA+AGG | 0.514449 | 5.3:-52264078 | MS.gene049972:CDS |
| TCTGATGTGGAGGAATTTGA+TGG | 0.514665 | 5.3:-52264524 | MS.gene049972:CDS |
| GGATTCAAGCTTTGCTGCAG+GGG | 0.516848 | 5.3:-52263876 | MS.gene049972:CDS |
| GGGATTCAAGCTTTGCTGCA+GGG | 0.523093 | 5.3:-52263877 | MS.gene049972:CDS |
| TTGTGGAACACCAACGGGTA+AGG | 0.525498 | 5.3:-52264140 | MS.gene049972:CDS |
| GAAGCATTTGCAGCCACCAC+CGG | 0.530483 | 5.3:+52265664 | None:intergenic |
| ACGTCTAGATCGCTTTGTCC+CGG | 0.534083 | 5.3:+52264006 | None:intergenic |
| TAGCAATTCAGCTCAAACTA+GGG | 0.535704 | 5.3:-52263897 | MS.gene049972:CDS |
| CACATTTGAAATGTTTGTGG+CGG | 0.549189 | 5.3:-52265782 | None:intergenic |
| CATTATGGTGTATTAGGTGT+AGG | 0.552166 | 5.3:-52263932 | MS.gene049972:CDS |
| ACTGCATTCTCCTTACCCGT+TGG | 0.580022 | 5.3:+52264130 | None:intergenic |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 5.3:-52265677 | MS.gene049972:CDS |
| TGTCAAACTCACTTGATCAA+AGG | 0.583358 | 5.3:+52264440 | None:intergenic |
| AGGTTCAGCTGCAATTGAAA+GGG | 0.584279 | 5.3:-52264077 | MS.gene049972:CDS |
| CTCGAGTTATGCCGGAGTGG+AGG | 0.588750 | 5.3:-52264097 | MS.gene049972:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 5.3:-52265683 | MS.gene049972:CDS |
| GATGCGTTGTGGAACACCAA+CGG | 0.591442 | 5.3:-52264146 | MS.gene049972:CDS |
| ATTAGGTGTAGGCTATGCAT+TGG | 0.596170 | 5.3:-52263921 | MS.gene049972:CDS |
| ATTTCAGGGCTGTTCTTCAG+GGG | 0.600176 | 5.3:-52264747 | MS.gene049972:CDS |
| TTCAGCTGCAATTGAAAGGG+CGG | 0.609680 | 5.3:-52264074 | MS.gene049972:CDS |
| GATTGTAGGATGTTCTGATG+TGG | 0.610205 | 5.3:-52264537 | MS.gene049972:intron |
| CTGATGTGGAGGAATTTGAT+GGG | 0.622298 | 5.3:-52264523 | MS.gene049972:CDS |
| ATGATACTGAGAGGCTTCAG+CGG | 0.625512 | 5.3:-52265600 | MS.gene049972:CDS |
| TGTAGGATGTTCTGATGTGG+AGG | 0.626867 | 5.3:-52264534 | MS.gene049972:intron |
| CTATATTACAGGTACAGAGA+TGG | 0.627725 | 5.3:+52263835 | None:intergenic |
| ACAGGTACAGAGATGGACAT+TGG | 0.635671 | 5.3:+52263842 | None:intergenic |
| AAACACTATAGCAAGTGAAG+CGG | 0.655689 | 5.3:+52263979 | None:intergenic |
| AATTCTCAAATGATACTGAG+AGG | 0.667400 | 5.3:-52265609 | MS.gene049972:CDS |
| TTGCAGCTGAACCTCCACTC+CGG | 0.668193 | 5.3:+52264086 | None:intergenic |
| TTGCTCGAGTTATGCCGGAG+TGG | 0.674659 | 5.3:-52264100 | MS.gene049972:CDS |
| TTGATAGGAATGATGCGTTG+TGG | 0.684688 | 5.3:-52264157 | MS.gene049972:intron |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 5.3:-52265680 | MS.gene049972:CDS |
| GCAAGATGGTTCTACCTACG+TGG | 0.709144 | 5.3:-52264794 | MS.gene049972:intron |
| AAGTGGTAACAAAACCACGT+AGG | 0.744385 | 5.3:+52264780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTCTACATTATTTTAA+TGG | - | chr5.3:52264791-52264810 | MS.gene049972:CDS | 15.0% |
| !! | AATGAATTTCTCAATATGTT+TGG | + | chr5.3:52264408-52264427 | None:intergenic | 20.0% |
| !! | CAAATTGAAACTAATATGTT+TGG | - | chr5.3:52264299-52264318 | MS.gene049972:intron | 20.0% |
| !! | TGAACAAAGAAAAAAATTGA+TGG | + | chr5.3:52265357-52265376 | None:intergenic | 20.0% |
| !!! | ATCAATTTTTTTCTTTGTTC+AGG | - | chr5.3:52265356-52265375 | MS.gene049972:intron | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | + | chr5.3:52264295-52264314 | None:intergenic | 20.0% |
| !!! | TTTTAATTATTGTTAGTGAC+TGG | - | chr5.3:52264128-52264147 | MS.gene049972:CDS | 20.0% |
| ! | AAAGTTTATCACTGCAAATT+AGG | + | chr5.3:52265301-52265320 | None:intergenic | 25.0% |
| ! | AACGAATTAATTCCTAATTG+TGG | + | chr5.3:52264502-52264521 | None:intergenic | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | - | chr5.3:52263970-52263989 | MS.gene049972:CDS | 25.0% |
| ! | ATTAAGATTTGTGTTGAAAG+TGG | - | chr5.3:52264898-52264917 | MS.gene049972:intron | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | + | chr5.3:52264741-52264760 | None:intergenic | 25.0% |
| !! | TCGTTAAAACCATATTGATT+TGG | - | chr5.3:52264517-52264536 | MS.gene049972:CDS | 25.0% |
| !! | TTCAGAAGAGTATATTGAAA+AGG | + | chr5.3:52265205-52265224 | None:intergenic | 25.0% |
| !!! | ACATTATTTTAATGGCAAGA+TGG | - | chr5.3:52264799-52264818 | MS.gene049972:intron | 25.0% |
| !!! | ATCTTTTTGTTTGCTTTGTT+TGG | - | chr5.3:52265426-52265445 | MS.gene049972:intron | 25.0% |
| AAGTATGCTATGTTGATATG+AGG | - | chr5.3:52264593-52264612 | MS.gene049972:intron | 30.0% | |
| AATTCTCAAATGATACTGAG+AGG | - | chr5.3:52263998-52264017 | MS.gene049972:CDS | 30.0% | |
| AATTTCTCAATATGTTTGGC+TGG | + | chr5.3:52264404-52264423 | None:intergenic | 30.0% | |
| ACCAAAACACCAAATCAATA+TGG | + | chr5.3:52264529-52264548 | None:intergenic | 30.0% | |
| ATTTCTCAATATGTTTGGCT+GGG | + | chr5.3:52264403-52264422 | None:intergenic | 30.0% | |
| CATACTTCATTTATTTGCTC+TGG | + | chr5.3:52264580-52264599 | None:intergenic | 30.0% | |
| CTCTTACAAGGTAATCTTTA+CGG | - | chr5.3:52264680-52264699 | MS.gene049972:intron | 30.0% | |
| GAAAATGCATCTCTACATTA+TGG | - | chr5.3:52265660-52265679 | MS.gene049972:CDS | 30.0% | |
| GCATTTGTCATAACTTCATA+AGG | + | chr5.3:52265143-52265162 | None:intergenic | 30.0% | |
| TCTCTACATTATGGTGTATT+AGG | - | chr5.3:52265669-52265688 | MS.gene049972:CDS | 30.0% | |
| TGTGTGTTATGTATGATTGT+AGG | - | chr5.3:52265056-52265075 | MS.gene049972:intron | 30.0% | |
| ! | TACATAACACACATTAGTCT+CGG | + | chr5.3:52265049-52265068 | None:intergenic | 30.0% |
| ! | TGGTGACTTTTAAGCTATAA+TGG | + | chr5.3:52264275-52264294 | None:intergenic | 30.0% |
| !! | AAACTAATATGTTTGGCTTG+TGG | - | chr5.3:52264306-52264325 | MS.gene049972:intron | 30.0% |
| !! | TTTGCTTTGTTTGGATTGAT+AGG | - | chr5.3:52265435-52265454 | MS.gene049972:intron | 30.0% |
| !!! | ACCATATTGATTTGGTGTTT+TGG | - | chr5.3:52264525-52264544 | MS.gene049972:CDS | 30.0% |
| AAACACTATAGCAAGTGAAG+CGG | + | chr5.3:52265631-52265650 | None:intergenic | 35.0% | |
| AAGTCCTAATACTGCACTAA+TGG | + | chr5.3:52265250-52265269 | None:intergenic | 35.0% | |
| ACCAATGAAAGTCCACAATT+AGG | - | chr5.3:52264487-52264506 | MS.gene049972:CDS | 35.0% | |
| CATTATGGTGTATTAGGTGT+AGG | - | chr5.3:52265675-52265694 | MS.gene049972:CDS | 35.0% | |
| CTATATTACAGGTACAGAGA+TGG | + | chr5.3:52265775-52265794 | None:intergenic | 35.0% | |
| CTTCAAACCCTACTATTTAC+CGG | - | chr5.3:52265582-52265601 | MS.gene049972:intron | 35.0% | |
| TAACCTCAAACTTAACAGCT+AGG | + | chr5.3:52264246-52264265 | None:intergenic | 35.0% | |
| TAGCAATTCAGCTCAAACTA+GGG | - | chr5.3:52265710-52265729 | MS.gene049972:CDS | 35.0% | |
| TAGCAGAAAACCTAATACTC+CGG | - | chr5.3:52263924-52263943 | MS.gene049972:CDS | 35.0% | |
| TCCTAATTGTGGACTTTCAT+TGG | + | chr5.3:52264491-52264510 | None:intergenic | 35.0% | |
| TGAAGCTTCAACAAAATCAC+AGG | + | chr5.3:52264333-52264352 | None:intergenic | 35.0% | |
| TGTCAAACTCACTTGATCAA+AGG | + | chr5.3:52265170-52265189 | None:intergenic | 35.0% | |
| TGTTCCATTAGTGCAGTATT+AGG | - | chr5.3:52265243-52265262 | MS.gene049972:intron | 35.0% | |
| TTCAAACCCTACTATTTACC+GGG | - | chr5.3:52265583-52265602 | MS.gene049972:intron | 35.0% | |
| TTTGTTCAGGACTATTGAGT+CGG | - | chr5.3:52265369-52265388 | MS.gene049972:intron | 35.0% | |
| ! | TAGTAGGGTTTGAAGTAATC+CGG | + | chr5.3:52265577-52265596 | None:intergenic | 35.0% |
| !! | ACTTTTGGAAGGAGATTTCA+GGG | - | chr5.3:52264846-52264865 | MS.gene049972:intron | 35.0% |
| !! | GACTCATTTGGTGTTTATTG+GGG | - | chr5.3:52265106-52265125 | MS.gene049972:intron | 35.0% |
| !! | GATTTTGATGCATGAGATGA+GGG | - | chr5.3:52264166-52264185 | MS.gene049972:intron | 35.0% |
| !! | GGACTCATTTGGTGTTTATT+GGG | - | chr5.3:52265105-52265124 | MS.gene049972:intron | 35.0% |
| !! | GTTTTGTTACCACTTTTGGA+AGG | - | chr5.3:52264835-52264854 | MS.gene049972:intron | 35.0% |
| !! | TGATTTTGATGCATGAGATG+AGG | - | chr5.3:52264165-52264184 | MS.gene049972:intron | 35.0% |
| AAACCAAACGTAGCATACGA+CGG | - | chr5.3:52264648-52264667 | MS.gene049972:intron | 40.0% | |
| AAGCCTAGCTGTTAAGTTTG+AGG | - | chr5.3:52264240-52264259 | MS.gene049972:intron | 40.0% | |
| AAGTGGTAACAAAACCACGT+AGG | + | chr5.3:52264830-52264849 | None:intergenic | 40.0% | |
| AGGTTCAGCTGCAATTGAAA+GGG | - | chr5.3:52265530-52265549 | MS.gene049972:intron | 40.0% | |
| ATTAGGTGTAGGCTATGCAT+TGG | - | chr5.3:52265686-52265705 | MS.gene049972:CDS | 40.0% | |
| CAATGGTAGAAACAAATCCC+CGG | - | chr5.3:52265003-52265022 | MS.gene049972:intron | 40.0% | |
| CTAGCAATTCAGCTCAAACT+AGG | - | chr5.3:52265709-52265728 | MS.gene049972:CDS | 40.0% | |
| CTGAAATCTCCTTCCAAAAG+TGG | + | chr5.3:52264847-52264866 | None:intergenic | 40.0% | |
| CTGATGTGGAGGAATTTGAT+GGG | - | chr5.3:52265084-52265103 | MS.gene049972:intron | 40.0% | |
| CTTTGTCCCGGTAAATAGTA+GGG | + | chr5.3:52265592-52265611 | None:intergenic | 40.0% | |
| GATTGTAGGATGTTCTGATG+TGG | - | chr5.3:52265070-52265089 | MS.gene049972:intron | 40.0% | |
| GCTGCAAATGCTTCATCAAA+TGG | - | chr5.3:52263952-52263971 | MS.gene049972:CDS | 40.0% | |
| GGAATTTGATGGGACTCATT+TGG | - | chr5.3:52265094-52265113 | MS.gene049972:intron | 40.0% | |
| TCTGATGTGGAGGAATTTGA+TGG | - | chr5.3:52265083-52265102 | MS.gene049972:intron | 40.0% | |
| TGAAGTAATCCGGCAATAGT+TGG | + | chr5.3:52265567-52265586 | None:intergenic | 40.0% | |
| TTGATAGGAATGATGCGTTG+TGG | - | chr5.3:52265450-52265469 | MS.gene049972:intron | 40.0% | |
| TTGTTCAGGACTATTGAGTC+GGG | - | chr5.3:52265370-52265389 | MS.gene049972:intron | 40.0% | |
| ! | AAGATGTTTCTGAGAGTCTG+AGG | - | chr5.3:52264622-52264641 | MS.gene049972:intron | 40.0% |
| !! | CACTTTTGGAAGGAGATTTC+AGG | - | chr5.3:52264845-52264864 | MS.gene049972:intron | 40.0% |
| !! | GGGACTCATTTGGTGTTTAT+TGG | - | chr5.3:52265104-52265123 | MS.gene049972:intron | 40.0% |
| !!! | CGTGGTTTTGTTACCACTTT+TGG | - | chr5.3:52264831-52264850 | MS.gene049972:intron | 40.0% |
| !!! | CGTGTTGCTTGAGGTAATTT+TGG | - | chr5.3:52264072-52264091 | MS.gene049972:CDS | 40.0% |
| !!! | TGGTGTTTTGGTTTGCTGAT+AGG | - | chr5.3:52264537-52264556 | MS.gene049972:intron | 40.0% |
| !!! | TTTTGGTTTGCTGATAGGCA+CGG | - | chr5.3:52264542-52264561 | MS.gene049972:intron | 40.0% |
| AAAACCTAATACTCCGGTGG+TGG | - | chr5.3:52263930-52263949 | MS.gene049972:CDS | 45.0% | |
| AACCAAACGTAGCATACGAC+GGG | - | chr5.3:52264649-52264668 | MS.gene049972:intron | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | - | chr5.3:52264036-52264055 | MS.gene049972:CDS | 45.0% | |
| ACAGGTACAGAGATGGACAT+TGG | + | chr5.3:52265768-52265787 | None:intergenic | 45.0% | |
| AGAAACAAATCCCCGGAGTT+GGG | - | chr5.3:52265010-52265029 | MS.gene049972:intron | 45.0% | |
| AGAATTGCGTCGAGCAAAGT+TGG | - | chr5.3:52263901-52263920 | MS.gene049972:CDS | 45.0% | |
| AGATTTCAGGGCTGTTCTTC+AGG | - | chr5.3:52264858-52264877 | MS.gene049972:intron | 45.0% | |
| ATGATACTGAGAGGCTTCAG+CGG | - | chr5.3:52264007-52264026 | MS.gene049972:CDS | 45.0% | |
| ATTTCAGGGCTGTTCTTCAG+GGG | - | chr5.3:52264860-52264879 | MS.gene049972:intron | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | - | chr5.3:52263927-52263946 | MS.gene049972:CDS | 45.0% | |
| CGTGTATTCTCTGCTCACAA+TGG | - | chr5.3:52264986-52265005 | MS.gene049972:intron | 45.0% | |
| GAGGTTCAGCTGCAATTGAA+AGG | - | chr5.3:52265529-52265548 | MS.gene049972:intron | 45.0% | |
| GATTTCAGGGCTGTTCTTCA+GGG | - | chr5.3:52264859-52264878 | MS.gene049972:intron | 45.0% | |
| GCTTTGTCCCGGTAAATAGT+AGG | + | chr5.3:52265593-52265612 | None:intergenic | 45.0% | |
| TAGAAACAAATCCCCGGAGT+TGG | - | chr5.3:52265009-52265028 | MS.gene049972:intron | 45.0% | |
| TCTCAATATGTTTGGCTGGG+CGG | + | chr5.3:52264400-52264419 | None:intergenic | 45.0% | |
| TGCAATTGAAAGGGCGGTTA+AGG | - | chr5.3:52265539-52265558 | MS.gene049972:intron | 45.0% | |
| TGTAGGATGTTCTGATGTGG+AGG | - | chr5.3:52265073-52265092 | MS.gene049972:intron | 45.0% | |
| TTCAGCTGCAATTGAAAGGG+CGG | - | chr5.3:52265533-52265552 | MS.gene049972:intron | 45.0% | |
| ! | ACACATTAGTCTCGGCATTG+TGG | + | chr5.3:52265041-52265060 | None:intergenic | 45.0% |
| ! | GTTAAGGCACCAACTATTGC+CGG | - | chr5.3:52265555-52265574 | MS.gene049972:intron | 45.0% |
| ! | TTGTGGCGGAAAAGCTAGAT+AGG | - | chr5.3:52263839-52263858 | MS.gene049972:CDS | 45.0% |
| !! | CATTTGGTGTTTATTGGGGC+TGG | - | chr5.3:52265110-52265129 | MS.gene049972:intron | 45.0% |
| ACGTCTAGATCGCTTTGTCC+CGG | + | chr5.3:52265604-52265623 | None:intergenic | 50.0% | |
| ACTGCATTCTCCTTACCCGT+TGG | + | chr5.3:52265480-52265499 | None:intergenic | 50.0% | |
| AGGGATTCAAGCTTTGCTGC+AGG | - | chr5.3:52265729-52265748 | MS.gene049972:CDS | 50.0% | |
| ATGCGTTGTGGAACACCAAC+GGG | - | chr5.3:52265462-52265481 | MS.gene049972:intron | 50.0% | |
| ATTGTGGTCCTACCCAACTC+CGG | + | chr5.3:52265025-52265044 | None:intergenic | 50.0% | |
| CAGCATTGCTCGAGTTATGC+CGG | - | chr5.3:52265502-52265521 | MS.gene049972:intron | 50.0% | |
| CGGGCAACAGTTCTCTTACA+AGG | - | chr5.3:52264668-52264687 | MS.gene049972:intron | 50.0% | |
| GATGCGTTGTGGAACACCAA+CGG | - | chr5.3:52265461-52265480 | MS.gene049972:intron | 50.0% | |
| GGATTCAAGCTTTGCTGCAG+GGG | - | chr5.3:52265731-52265750 | MS.gene049972:CDS | 50.0% | |
| GGGATTCAAGCTTTGCTGCA+GGG | - | chr5.3:52265730-52265749 | MS.gene049972:CDS | 50.0% | |
| TTGTGGAACACCAACGGGTA+AGG | - | chr5.3:52265467-52265486 | MS.gene049972:intron | 50.0% | |
| ! | GCAAGATGGTTCTACCTACG+TGG | - | chr5.3:52264813-52264832 | MS.gene049972:intron | 50.0% |
| ACAAATCCCCGGAGTTGGGT+AGG | - | chr5.3:52265014-52265033 | MS.gene049972:intron | 55.0% | |
| ACGCTCCATCTGAGCACCAA+CGG | + | chr5.3:52264055-52264074 | None:intergenic | 55.0% | |
| TGCCCGTCGTATGCTACGTT+TGG | + | chr5.3:52264654-52264673 | None:intergenic | 55.0% | |
| TTGCAGCTGAACCTCCACTC+CGG | + | chr5.3:52265524-52265543 | None:intergenic | 55.0% | |
| TTGCTCGAGTTATGCCGGAG+TGG | - | chr5.3:52265507-52265526 | MS.gene049972:intron | 55.0% | |
| TTGTGGTCCTACCCAACTCC+GGG | + | chr5.3:52265024-52265043 | None:intergenic | 55.0% | |
| ! | GAAGCATTTGCAGCCACCAC+CGG | + | chr5.3:52263946-52263965 | None:intergenic | 55.0% |
| !! | CAGATGGAGCGTGTTGCTTG+AGG | - | chr5.3:52264063-52264082 | MS.gene049972:CDS | 55.0% |
| CGCTCCATCTGAGCACCAAC+GGG | + | chr5.3:52264054-52264073 | None:intergenic | 60.0% | |
| CTCCATCTGAGCACCAACGG+GGG | + | chr5.3:52264052-52264071 | None:intergenic | 60.0% | |
| CTCGAGTTATGCCGGAGTGG+AGG | - | chr5.3:52265510-52265529 | MS.gene049972:intron | 60.0% | |
| GCTCCATCTGAGCACCAACG+GGG | + | chr5.3:52264053-52264072 | None:intergenic | 60.0% | |
| TGTGGTCCTACCCAACTCCG+GGG | + | chr5.3:52265023-52265042 | None:intergenic | 60.0% | |
| ! | GCAGCCACCACCGGAGTATT+AGG | + | chr5.3:52263937-52263956 | None:intergenic | 60.0% |
| ! | AGCCCCCGTTGGTGCTCAGA+TGG | - | chr5.3:52264047-52264066 | MS.gene049972:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 52263835 | 52265794 | 52263835 | ID=MS.gene049972 |
| chr5.3 | mRNA | 52263835 | 52265794 | 52263835 | ID=MS.gene049972.t1;Parent=MS.gene049972 |
| chr5.3 | exon | 52265587 | 52265794 | 52265587 | ID=MS.gene049972.t1.exon1;Parent=MS.gene049972.t1 |
| chr5.3 | CDS | 52265587 | 52265794 | 52265587 | ID=cds.MS.gene049972.t1;Parent=MS.gene049972.t1 |
| chr5.3 | exon | 52264710 | 52264811 | 52264710 | ID=MS.gene049972.t1.exon2;Parent=MS.gene049972.t1 |
| chr5.3 | CDS | 52264710 | 52264811 | 52264710 | ID=cds.MS.gene049972.t1;Parent=MS.gene049972.t1 |
| chr5.3 | exon | 52264452 | 52264551 | 52264452 | ID=MS.gene049972.t1.exon3;Parent=MS.gene049972.t1 |
| chr5.3 | CDS | 52264452 | 52264551 | 52264452 | ID=cds.MS.gene049972.t1;Parent=MS.gene049972.t1 |
| chr5.3 | exon | 52264238 | 52264251 | 52264238 | ID=MS.gene049972.t1.exon4;Parent=MS.gene049972.t1 |
| chr5.3 | CDS | 52264238 | 52264251 | 52264238 | ID=cds.MS.gene049972.t1;Parent=MS.gene049972.t1 |
| chr5.3 | exon | 52263835 | 52264172 | 52263835 | ID=MS.gene049972.t1.exon5;Parent=MS.gene049972.t1 |
| chr5.3 | CDS | 52263835 | 52264172 | 52263835 | ID=cds.MS.gene049972.t1;Parent=MS.gene049972.t1 |
| Gene Sequence |
| Protein sequence |
