Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62463.t1 | XP_013458081.1 | 93.3 | 403 | 18 | 1 | 1 | 394 | 1 | 403 | 4.40E-213 | 750.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62463.t1 | A0A072UR05 | 93.3 | 403 | 18 | 1 | 1 | 394 | 1 | 403 | 3.1e-213 | 750.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060522 | MS.gene62463 | 0.802954 | 4.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62463.t1 | MTR_4g113670 | 93.300 | 403 | 18 | 1 | 1 | 394 | 1 | 403 | 0.0 | 771 |
| MS.gene62463.t1 | MTR_4g113670 | 92.464 | 345 | 17 | 1 | 1 | 336 | 1 | 345 | 0.0 | 653 |
| MS.gene62463.t1 | MTR_4g113670 | 91.729 | 266 | 13 | 1 | 1 | 257 | 1 | 266 | 2.41e-179 | 499 |
| MS.gene62463.t1 | MTR_3g107680 | 32.483 | 431 | 237 | 10 | 1 | 391 | 1 | 417 | 1.07e-55 | 189 |
| MS.gene62463.t1 | MTR_3g107680 | 31.034 | 319 | 198 | 8 | 1 | 311 | 1 | 305 | 3.36e-32 | 125 |
| MS.gene62463.t1 | MTR_1g084210 | 29.577 | 142 | 95 | 3 | 1 | 139 | 54 | 193 | 6.11e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62463.t1 | AT4G32440 | 39.447 | 398 | 202 | 10 | 1 | 387 | 1 | 370 | 7.06e-74 | 235 |
| MS.gene62463.t1 | AT4G32440 | 38.875 | 391 | 200 | 10 | 1 | 380 | 1 | 363 | 1.15e-69 | 224 |
| MS.gene62463.t1 | AT5G20030 | 38.000 | 400 | 168 | 11 | 1 | 394 | 1 | 326 | 2.16e-63 | 206 |
| MS.gene62463.t1 | AT5G20030 | 38.000 | 400 | 168 | 11 | 1 | 394 | 1 | 326 | 2.16e-63 | 206 |
| MS.gene62463.t1 | AT4G32440 | 33.993 | 303 | 167 | 7 | 1 | 290 | 1 | 283 | 2.74e-40 | 145 |
| MS.gene62463.t1 | AT2G25590 | 47.101 | 138 | 71 | 2 | 1 | 137 | 1 | 137 | 9.15e-35 | 132 |
Find 95 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTGTTCCCAACTTAA+AGG | 0.192880 | 8.2:-14564264 | None:intergenic |
| AAGTTAGCAAATTTGATATT+CGG | 0.271483 | 8.2:+14563143 | MS.gene62463:CDS |
| TGCATTGCTGTTAGGCTACT+TGG | 0.324453 | 8.2:+14563103 | MS.gene62463:CDS |
| TACAGGAAATTGCAATTTAT+AGG | 0.333504 | 8.2:-14564064 | None:intergenic |
| TGTCAGCTTTGACTTATAAT+CGG | 0.338593 | 8.2:+14563677 | MS.gene62463:CDS |
| GCTGCTGTGGGTTGTTCATT+TGG | 0.339068 | 8.2:+14563967 | MS.gene62463:CDS |
| CACTTGAACTTGTGGAGAAT+TGG | 0.339132 | 8.2:+14563002 | MS.gene62463:CDS |
| AGCAAAGCTGAGGTGCCTTC+TGG | 0.348934 | 8.2:+14562845 | MS.gene62463:CDS |
| GAAGAATGGGATTGTTGATA+TGG | 0.349536 | 8.2:+14563921 | MS.gene62463:CDS |
| AGTTAGCAAATTTGATATTC+GGG | 0.355743 | 8.2:+14563144 | MS.gene62463:CDS |
| CTGAACCTCTGCCAAAGTTA+AGG | 0.366412 | 8.2:+14563764 | MS.gene62463:CDS |
| AATTGGCAAGGAAAATTCAT+AGG | 0.383309 | 8.2:+14564190 | MS.gene62463:CDS |
| GGTTCTGCTAGCTGTGATAA+TGG | 0.406897 | 8.2:+14563607 | MS.gene62463:CDS |
| CGCAGAGATCATCGGTGGTA+AGG | 0.424268 | 8.2:+14562880 | MS.gene62463:CDS |
| CCGTTACACTGTTATGTATG+AGG | 0.427399 | 8.2:+14562907 | MS.gene62463:CDS |
| CTGAGGTGCCTTCTGGCTCC+TGG | 0.431731 | 8.2:+14562852 | MS.gene62463:CDS |
| TGAACCTCTGCCAAAGTTAA+GGG | 0.432025 | 8.2:+14563765 | MS.gene62463:CDS |
| CCGTCCCACACGAAAAGAAT+TGG | 0.434168 | 8.2:+14564173 | MS.gene62463:CDS |
| TCCTCAATTGCCCTTAACTT+TGG | 0.435600 | 8.2:-14563775 | None:intergenic |
| TCAAATGGACCTGCAGATAC+AGG | 0.435709 | 8.2:-14564081 | None:intergenic |
| TCTTCAGCTGGCACATGTCT+TGG | 0.438373 | 8.2:-14563871 | None:intergenic |
| ATTGAGGCATTGTTTGCGTC+AGG | 0.438499 | 8.2:+14564240 | MS.gene62463:CDS |
| CTGTAAACAGTAGGAAGAAT+GGG | 0.451080 | 8.2:+14563908 | MS.gene62463:CDS |
| TTGCAATTTCCTGTATCTGC+AGG | 0.466258 | 8.2:+14564072 | MS.gene62463:CDS |
| TGCGTCAGGACCTTTAAGTT+GGG | 0.468318 | 8.2:+14564254 | MS.gene62463:CDS |
| TTGCGTCAGGACCTTTAAGT+TGG | 0.469617 | 8.2:+14564253 | MS.gene62463:CDS |
| TTGTACATGTTTAAGTGGTG+TGG | 0.472803 | 8.2:-14563836 | None:intergenic |
| TGAGGGATTTCGAGGTCCTA+TGG | 0.472833 | 8.2:+14562925 | MS.gene62463:CDS |
| TCTGTAAACAGTAGGAAGAA+TGG | 0.480789 | 8.2:+14563907 | MS.gene62463:CDS |
| GTCAGCTTTGACTTATAATC+GGG | 0.482176 | 8.2:+14563678 | MS.gene62463:CDS |
| TCAGAATTTCTCTTGGAAGA+TGG | 0.485444 | 8.2:+14563051 | MS.gene62463:CDS |
| GATGATCTCTGCGCATAGCC+AGG | 0.490942 | 8.2:-14562870 | None:intergenic |
| CGATCATGCGATTCAAGAAA+GGG | 0.496319 | 8.2:+14562804 | None:intergenic |
| TGTACATGTTTAAGTGGTGT+GGG | 0.498268 | 8.2:-14563835 | None:intergenic |
| GCCAAAGTTAAGGGCAATTG+AGG | 0.503706 | 8.2:+14563774 | MS.gene62463:CDS |
| GAACTGTCTACATCTTCAAA+TGG | 0.507082 | 8.2:-14564096 | None:intergenic |
| CATGTTTAAGTGGTGTGGGT+GGG | 0.509663 | 8.2:-14563831 | None:intergenic |
| GCGATCATGCGATTCAAGAA+AGG | 0.510558 | 8.2:+14562803 | None:intergenic |
| TTAAGGGCAATTGAGGATGA+TGG | 0.517889 | 8.2:+14563781 | MS.gene62463:CDS |
| AGATGTAACAAAGCAAGAGT+TGG | 0.522342 | 8.2:+14563805 | MS.gene62463:CDS |
| TCCTATGGATGAGGAAATTG+TGG | 0.522986 | 8.2:+14562940 | MS.gene62463:CDS |
| AGTTCAAGTGGCGGCGGACA+CGG | 0.523763 | 8.2:-14562989 | None:intergenic |
| GAGGAAACAAATTGCTGCTG+TGG | 0.532654 | 8.2:+14563954 | MS.gene62463:CDS |
| GCGCATAGCCAGGAGCCAGA+AGG | 0.534346 | 8.2:-14562860 | None:intergenic |
| TTTCTCTTGGAAGATGGCTA+CGG | 0.534357 | 8.2:+14563057 | MS.gene62463:CDS |
| AAGTATATCAGAATTTCTCT+TGG | 0.536145 | 8.2:+14563044 | MS.gene62463:CDS |
| GCGATTCAAGAAAGGGACTA+AGG | 0.538395 | 8.2:+14562811 | MS.gene62463:CDS |
| TAGGCTACTTGGATCTTCTG+TGG | 0.539977 | 8.2:+14563114 | MS.gene62463:CDS |
| TCCGCCGCCACTTGAACTTG+TGG | 0.540574 | 8.2:+14562994 | MS.gene62463:CDS |
| CGTTACACTGTTATGTATGA+GGG | 0.542469 | 8.2:+14562908 | MS.gene62463:CDS |
| TGCCTATCGTTGTACAATTG+AGG | 0.543589 | 8.2:+14564224 | MS.gene62463:CDS |
| ACATGTTTAAGTGGTGTGGG+TGG | 0.546027 | 8.2:-14563832 | None:intergenic |
| TGGCTATGCGCAGAGATCAT+CGG | 0.547396 | 8.2:+14562872 | MS.gene62463:CDS |
| GCATATTTATAATCTTCAGC+TGG | 0.551671 | 8.2:-14563883 | None:intergenic |
| GTTATGTATGAGGGATTTCG+AGG | 0.556559 | 8.2:+14562917 | MS.gene62463:CDS |
| GCAAGATGACAAGTGGTTTG+TGG | 0.557509 | 8.2:+14563180 | MS.gene62463:CDS |
| ATTGCCCTTAACTTTGGCAG+AGG | 0.559077 | 8.2:-14563769 | None:intergenic |
| TGCTGAATCTACCTGCGAGA+GGG | 0.563461 | 8.2:+14564128 | MS.gene62463:CDS |
| GCAGAGATCATCGGTGGTAA+GGG | 0.566486 | 8.2:+14562881 | MS.gene62463:CDS |
| TTGGACTCCAGGTGATATTG+TGG | 0.573973 | 8.2:+14563021 | MS.gene62463:CDS |
| AATATGCTTCTGTAAACAGT+AGG | 0.574800 | 8.2:+14563899 | MS.gene62463:CDS |
| TCCACAAGTTCAAGTGGCGG+CGG | 0.577331 | 8.2:-14562995 | None:intergenic |
| AACAGAGCATGTAACACTAT+CGG | 0.581635 | 8.2:-14564013 | None:intergenic |
| CTTGTGGAGAATTGGACTCC+AGG | 0.586001 | 8.2:+14563010 | MS.gene62463:CDS |
| ATTTCGAGGTCCTATGGATG+AGG | 0.586670 | 8.2:+14562931 | MS.gene62463:CDS |
| CAAGTGGTTTGTGGTGGGAA+AGG | 0.592216 | 8.2:+14563189 | MS.gene62463:CDS |
| TAGTATCGAAGAAATCGATA+AGG | 0.594548 | 8.2:+14562966 | MS.gene62463:CDS |
| CAATTTATAGGAATTCCCAC+TGG | 0.599832 | 8.2:-14564052 | None:intergenic |
| TGCCTCAATTGTACAACGAT+AGG | 0.611837 | 8.2:-14564226 | None:intergenic |
| AGGACGTCATTCACAAGTTG+AGG | 0.614174 | 8.2:+14563735 | MS.gene62463:CDS |
| CAATTCTCCACAAGTTCAAG+TGG | 0.615692 | 8.2:-14563001 | None:intergenic |
| TCCACAATTTCCTCATCCAT+AGG | 0.616278 | 8.2:-14562941 | None:intergenic |
| TTGATATGTTAAGCGAAAGA+CGG | 0.617141 | 8.2:-14564302 | None:intergenic |
| TATACTTCCACAATATCACC+TGG | 0.621237 | 8.2:-14563028 | None:intergenic |
| CCACACGAAAAGAATTGGCA+AGG | 0.628263 | 8.2:+14564178 | MS.gene62463:CDS |
| GATAGTGTTACATGCTCTGT+TGG | 0.630628 | 8.2:+14564015 | MS.gene62463:CDS |
| ATGCTGAATCTACCTGCGAG+AGG | 0.634524 | 8.2:+14564127 | MS.gene62463:CDS |
| AGATGACAAGTGGTTTGTGG+TGG | 0.636421 | 8.2:+14563183 | MS.gene62463:CDS |
| TTCTCCACAAGTTCAAGTGG+CGG | 0.638349 | 8.2:-14562998 | None:intergenic |
| GCTGAATCTACCTGCGAGAG+GGG | 0.638768 | 8.2:+14564129 | MS.gene62463:CDS |
| AGGAAACAAATTGCTGCTGT+GGG | 0.647045 | 8.2:+14563955 | MS.gene62463:CDS |
| GATGACAAGTGGTTTGTGGT+GGG | 0.652201 | 8.2:+14563184 | MS.gene62463:CDS |
| CTGAATCTACCTGCGAGAGG+GGG | 0.652340 | 8.2:+14564130 | MS.gene62463:CDS |
| CCTCATACATAACAGTGTAA+CGG | 0.654519 | 8.2:-14562907 | None:intergenic |
| AGTCGTGGCAAGATGACAAG+TGG | 0.661513 | 8.2:+14563173 | MS.gene62463:CDS |
| GGAAGTGCTAAGCAAAGCTG+AGG | 0.663188 | 8.2:+14562835 | MS.gene62463:CDS |
| TTGATATGGACACAGAGAGG+AGG | 0.663740 | 8.2:+14563935 | MS.gene62463:CDS |
| ATATGTTAAGCGAAAGACGG+AGG | 0.671653 | 8.2:-14564299 | None:intergenic |
| ATATTCGGGTCAGACAGTCG+TGG | 0.673799 | 8.2:+14563158 | MS.gene62463:CDS |
| GGTAGCTGTAGTATCACCAG+TGG | 0.674097 | 8.2:+14564036 | MS.gene62463:CDS |
| ATTCAAGAAAGGGACTAAGG+TGG | 0.678749 | 8.2:+14562814 | MS.gene62463:CDS |
| CTATGCGCAGAGATCATCGG+TGG | 0.699678 | 8.2:+14562875 | MS.gene62463:CDS |
| GTAGCTGTAGTATCACCAGT+GGG | 0.708719 | 8.2:+14564037 | MS.gene62463:CDS |
| TTGTTGATATGGACACAGAG+AGG | 0.716324 | 8.2:+14563932 | MS.gene62463:CDS |
| CATACATAACAGTGTAACGG+TGG | 0.739011 | 8.2:-14562904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTAATTGAAATTTTAATAA+AGG | + | chr8.2:14563403-14563422 | MS.gene62463:intron | 15.0% |
| !!! | TTAATAAAGGAATTTTTCTT+AGG | + | chr8.2:14563416-14563435 | MS.gene62463:intron | 15.0% |
| !!! | TTTGTTATTTTCATTATATG+TGG | + | chr8.2:14563238-14563257 | MS.gene62463:intron | 15.0% |
| !! | AAATAACAAAATGACTCATA+TGG | - | chr8.2:14563228-14563247 | None:intergenic | 20.0% |
| !! | AAGTTAGCAAATTTGATATT+CGG | + | chr8.2:14563143-14563162 | MS.gene62463:CDS | 20.0% |
| !! | AATAACAAAATGACTCATAT+GGG | - | chr8.2:14563227-14563246 | None:intergenic | 20.0% |
| !! | AATATGAACTGAAGAAAATT+TGG | - | chr8.2:14563485-14563504 | None:intergenic | 20.0% |
| !!! | TTCAATGTTTTAAAAGAAAC+AGG | - | chr8.2:14563712-14563731 | None:intergenic | 20.0% |
| ! | AAACAGAATACATTGAATCA+AGG | - | chr8.2:14563344-14563363 | None:intergenic | 25.0% |
| ! | AAGTATATCAGAATTTCTCT+TGG | + | chr8.2:14563044-14563063 | MS.gene62463:CDS | 25.0% |
| ! | AGTTAGCAAATTTGATATTC+GGG | + | chr8.2:14563144-14563163 | MS.gene62463:CDS | 25.0% |
| ! | TACAGGAAATTGCAATTTAT+AGG | - | chr8.2:14564067-14564086 | None:intergenic | 25.0% |
| !! | ACATTTTGTACATGTTTAAG+TGG | - | chr8.2:14563844-14563863 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTAAATGTTTC+TGG | + | chr8.2:14563529-14563548 | MS.gene62463:intron | 25.0% |
| !!! | TCTTTTAAAACATTGAAACG+AGG | + | chr8.2:14563715-14563734 | MS.gene62463:CDS | 25.0% |
| AATATGCTTCTGTAAACAGT+AGG | + | chr8.2:14563899-14563918 | MS.gene62463:CDS | 30.0% | |
| AATTGGCAAGGAAAATTCAT+AGG | + | chr8.2:14564190-14564209 | MS.gene62463:CDS | 30.0% | |
| GCATATTTATAATCTTCAGC+TGG | - | chr8.2:14563886-14563905 | None:intergenic | 30.0% | |
| TTATGCTTCTACTATCTTCA+GGG | + | chr8.2:14563586-14563605 | MS.gene62463:intron | 30.0% | |
| TTGATATGTTAAGCGAAAGA+CGG | - | chr8.2:14564305-14564324 | None:intergenic | 30.0% | |
| TTTATGCTTCTACTATCTTC+AGG | + | chr8.2:14563585-14563604 | MS.gene62463:intron | 30.0% | |
| ! | TAGTATCGAAGAAATCGATA+AGG | + | chr8.2:14562966-14562985 | MS.gene62463:CDS | 30.0% |
| ! | TGTCAGCTTTGACTTATAAT+CGG | + | chr8.2:14563677-14563696 | MS.gene62463:CDS | 30.0% |
| !! | GGAATTTTTCTTAGGTTGTT+TGG | + | chr8.2:14563424-14563443 | MS.gene62463:intron | 30.0% |
| !!! | GTTGGTTTTTATCAAGCTTT+TGG | + | chr8.2:14563313-14563332 | MS.gene62463:intron | 30.0% |
| !!! | TGTTTTAAAAGAAACAGGAC+AGG | - | chr8.2:14563707-14563726 | None:intergenic | 30.0% |
| AACAGAGCATGTAACACTAT+CGG | - | chr8.2:14564016-14564035 | None:intergenic | 35.0% | |
| AGATGTAACAAAGCAAGAGT+TGG | + | chr8.2:14563805-14563824 | MS.gene62463:CDS | 35.0% | |
| CAATTTATAGGAATTCCCAC+TGG | - | chr8.2:14564055-14564074 | None:intergenic | 35.0% | |
| CCTCATACATAACAGTGTAA+CGG | - | chr8.2:14562910-14562929 | None:intergenic | 35.0% | |
| CGTTACACTGTTATGTATGA+GGG | + | chr8.2:14562908-14562927 | MS.gene62463:CDS | 35.0% | |
| CTGTAAACAGTAGGAAGAAT+GGG | + | chr8.2:14563908-14563927 | MS.gene62463:CDS | 35.0% | |
| GAACTGTCTACATCTTCAAA+TGG | - | chr8.2:14564099-14564118 | None:intergenic | 35.0% | |
| GAAGAATGGGATTGTTGATA+TGG | + | chr8.2:14563921-14563940 | MS.gene62463:CDS | 35.0% | |
| TATACTTCCACAATATCACC+TGG | - | chr8.2:14563031-14563050 | None:intergenic | 35.0% | |
| TCAGAATTTCTCTTGGAAGA+TGG | + | chr8.2:14563051-14563070 | MS.gene62463:CDS | 35.0% | |
| TCTGTAAACAGTAGGAAGAA+TGG | + | chr8.2:14563907-14563926 | MS.gene62463:CDS | 35.0% | |
| TGTACATGTTTAAGTGGTGT+GGG | - | chr8.2:14563838-14563857 | None:intergenic | 35.0% | |
| TTGCAGATCATACATTGAGT+TGG | + | chr8.2:14563295-14563314 | MS.gene62463:intron | 35.0% | |
| TTGTACATGTTTAAGTGGTG+TGG | - | chr8.2:14563839-14563858 | None:intergenic | 35.0% | |
| ! | GTCAGCTTTGACTTATAATC+GGG | + | chr8.2:14563678-14563697 | MS.gene62463:CDS | 35.0% |
| AGGAAACAAATTGCTGCTGT+GGG | + | chr8.2:14563955-14563974 | MS.gene62463:CDS | 40.0% | |
| ATATGTTAAGCGAAAGACGG+AGG | - | chr8.2:14564302-14564321 | None:intergenic | 40.0% | |
| ATCTGCAACCACATTTGTAC+TGG | - | chr8.2:14563283-14563302 | None:intergenic | 40.0% | |
| ATTCAAGAAAGGGACTAAGG+TGG | + | chr8.2:14562814-14562833 | MS.gene62463:CDS | 40.0% | |
| CAATTCTCCACAAGTTCAAG+TGG | - | chr8.2:14563004-14563023 | None:intergenic | 40.0% | |
| CACTTGAACTTGTGGAGAAT+TGG | + | chr8.2:14563002-14563021 | MS.gene62463:CDS | 40.0% | |
| CATACATAACAGTGTAACGG+TGG | - | chr8.2:14562907-14562926 | None:intergenic | 40.0% | |
| CCGTTACACTGTTATGTATG+AGG | + | chr8.2:14562907-14562926 | MS.gene62463:CDS | 40.0% | |
| GATAGTGTTACATGCTCTGT+TGG | + | chr8.2:14564015-14564034 | MS.gene62463:CDS | 40.0% | |
| GCTTCTTGTTCCCAACTTAA+AGG | - | chr8.2:14564267-14564286 | None:intergenic | 40.0% | |
| GTTATGTATGAGGGATTTCG+AGG | + | chr8.2:14562917-14562936 | MS.gene62463:CDS | 40.0% | |
| TCCACAATTTCCTCATCCAT+AGG | - | chr8.2:14562944-14562963 | None:intergenic | 40.0% | |
| TCCTATGGATGAGGAAATTG+TGG | + | chr8.2:14562940-14562959 | MS.gene62463:CDS | 40.0% | |
| TCCTCAATTGCCCTTAACTT+TGG | - | chr8.2:14563778-14563797 | None:intergenic | 40.0% | |
| TGAACCTCTGCCAAAGTTAA+GGG | + | chr8.2:14563765-14563784 | MS.gene62463:CDS | 40.0% | |
| TGCCTATCGTTGTACAATTG+AGG | + | chr8.2:14564224-14564243 | MS.gene62463:CDS | 40.0% | |
| TGCCTCAATTGTACAACGAT+AGG | - | chr8.2:14564229-14564248 | None:intergenic | 40.0% | |
| TTAAGGGCAATTGAGGATGA+TGG | + | chr8.2:14563781-14563800 | MS.gene62463:CDS | 40.0% | |
| TTGCAATTTCCTGTATCTGC+AGG | + | chr8.2:14564072-14564091 | MS.gene62463:CDS | 40.0% | |
| TTGTTGATATGGACACAGAG+AGG | + | chr8.2:14563932-14563951 | MS.gene62463:CDS | 40.0% | |
| TTTCTCTTGGAAGATGGCTA+CGG | + | chr8.2:14563057-14563076 | MS.gene62463:CDS | 40.0% | |
| ! | CTTGCCAATTCTTTTCGTGT+GGG | - | chr8.2:14564180-14564199 | None:intergenic | 40.0% |
| ! | GGAAAAAGTGCATTGCTGTT+AGG | + | chr8.2:14563095-14563114 | MS.gene62463:CDS | 40.0% |
| ! | TTTGTACTGGCAAGGACAAT+TGG | - | chr8.2:14563270-14563289 | None:intergenic | 40.0% |
| !!! | CTACGGTTTTGAAGGTTTTG+GGG | + | chr8.2:14563074-14563093 | MS.gene62463:CDS | 40.0% |
| !!! | GCTACGGTTTTGAAGGTTTT+GGG | + | chr8.2:14563073-14563092 | MS.gene62463:CDS | 40.0% |
| ACATGTTTAAGTGGTGTGGG+TGG | - | chr8.2:14563835-14563854 | None:intergenic | 45.0% | |
| AGGACGTCATTCACAAGTTG+AGG | + | chr8.2:14563735-14563754 | MS.gene62463:CDS | 45.0% | |
| ATTGCCCTTAACTTTGGCAG+AGG | - | chr8.2:14563772-14563791 | None:intergenic | 45.0% | |
| ATTTCGAGGTCCTATGGATG+AGG | + | chr8.2:14562931-14562950 | MS.gene62463:CDS | 45.0% | |
| CATGTTTAAGTGGTGTGGGT+GGG | - | chr8.2:14563834-14563853 | None:intergenic | 45.0% | |
| CCACACGAAAAGAATTGGCA+AGG | + | chr8.2:14564178-14564197 | MS.gene62463:CDS | 45.0% | |
| CTGAACCTCTGCCAAAGTTA+AGG | + | chr8.2:14563764-14563783 | MS.gene62463:CDS | 45.0% | |
| GAGGAAACAAATTGCTGCTG+TGG | + | chr8.2:14563954-14563973 | MS.gene62463:CDS | 45.0% | |
| GCAAGATGACAAGTGGTTTG+TGG | + | chr8.2:14563180-14563199 | MS.gene62463:CDS | 45.0% | |
| GCCAAAGTTAAGGGCAATTG+AGG | + | chr8.2:14563774-14563793 | MS.gene62463:CDS | 45.0% | |
| GCGATTCAAGAAAGGGACTA+AGG | + | chr8.2:14562811-14562830 | MS.gene62463:CDS | 45.0% | |
| GGTTCTGCTAGCTGTGATAA+TGG | + | chr8.2:14563607-14563626 | MS.gene62463:CDS | 45.0% | |
| GTAGCTGTAGTATCACCAGT+GGG | + | chr8.2:14564037-14564056 | MS.gene62463:CDS | 45.0% | |
| TAGGCTACTTGGATCTTCTG+TGG | + | chr8.2:14563114-14563133 | MS.gene62463:CDS | 45.0% | |
| TCAAATGGACCTGCAGATAC+AGG | - | chr8.2:14564084-14564103 | None:intergenic | 45.0% | |
| TGTCCTTGCCAGTACAAATG+TGG | + | chr8.2:14563272-14563291 | MS.gene62463:intron | 45.0% | |
| TTCTCCACAAGTTCAAGTGG+CGG | - | chr8.2:14563001-14563020 | None:intergenic | 45.0% | |
| TTGATATGGACACAGAGAGG+AGG | + | chr8.2:14563935-14563954 | MS.gene62463:CDS | 45.0% | |
| TTGCGTCAGGACCTTTAAGT+TGG | + | chr8.2:14564253-14564272 | MS.gene62463:CDS | 45.0% | |
| TTGGACTCCAGGTGATATTG+TGG | + | chr8.2:14563021-14563040 | MS.gene62463:CDS | 45.0% | |
| ! | AGATGACAAGTGGTTTGTGG+TGG | + | chr8.2:14563183-14563202 | MS.gene62463:CDS | 45.0% |
| ! | CAACCACATTTGTACTGGCA+AGG | - | chr8.2:14563278-14563297 | None:intergenic | 45.0% |
| ! | CAATTCTTTTCGTGTGGGAC+GGG | - | chr8.2:14564175-14564194 | None:intergenic | 45.0% |
| ! | CCAATTCTTTTCGTGTGGGA+CGG | - | chr8.2:14564176-14564195 | None:intergenic | 45.0% |
| ! | CCTTGCCAATTCTTTTCGTG+TGG | - | chr8.2:14564181-14564200 | None:intergenic | 45.0% |
| ! | GATGACAAGTGGTTTGTGGT+GGG | + | chr8.2:14563184-14563203 | MS.gene62463:CDS | 45.0% |
| ! | TGCATTGCTGTTAGGCTACT+TGG | + | chr8.2:14563103-14563122 | MS.gene62463:CDS | 45.0% |
| ! | TGCGTCAGGACCTTTAAGTT+GGG | + | chr8.2:14564254-14564273 | MS.gene62463:CDS | 45.0% |
| !! | ATTGAGGCATTGTTTGCGTC+AGG | + | chr8.2:14564240-14564259 | MS.gene62463:CDS | 45.0% |
| !! | GAAGATGGCTACGGTTTTGA+AGG | + | chr8.2:14563066-14563085 | MS.gene62463:CDS | 45.0% |
| !!! | GGCTACGGTTTTGAAGGTTT+TGG | + | chr8.2:14563072-14563091 | MS.gene62463:CDS | 45.0% |
| AGTCGTGGCAAGATGACAAG+TGG | + | chr8.2:14563173-14563192 | MS.gene62463:CDS | 50.0% | |
| ATATTCGGGTCAGACAGTCG+TGG | + | chr8.2:14563158-14563177 | MS.gene62463:CDS | 50.0% | |
| ATGCTGAATCTACCTGCGAG+AGG | + | chr8.2:14564127-14564146 | MS.gene62463:CDS | 50.0% | |
| CCGTCCCACACGAAAAGAAT+TGG | + | chr8.2:14564173-14564192 | MS.gene62463:CDS | 50.0% | |
| CTTGTGGAGAATTGGACTCC+AGG | + | chr8.2:14563010-14563029 | MS.gene62463:CDS | 50.0% | |
| GCAGAGATCATCGGTGGTAA+GGG | + | chr8.2:14562881-14562900 | MS.gene62463:CDS | 50.0% | |
| GGTAGCTGTAGTATCACCAG+TGG | + | chr8.2:14564036-14564055 | MS.gene62463:CDS | 50.0% | |
| TCTTCAGCTGGCACATGTCT+TGG | - | chr8.2:14563874-14563893 | None:intergenic | 50.0% | |
| TGAGGGATTTCGAGGTCCTA+TGG | + | chr8.2:14562925-14562944 | MS.gene62463:CDS | 50.0% | |
| TGCTGAATCTACCTGCGAGA+GGG | + | chr8.2:14564128-14564147 | MS.gene62463:CDS | 50.0% | |
| TGGCTATGCGCAGAGATCAT+CGG | + | chr8.2:14562872-14562891 | MS.gene62463:CDS | 50.0% | |
| ! | CAAGTGGTTTGTGGTGGGAA+AGG | + | chr8.2:14563189-14563208 | MS.gene62463:CDS | 50.0% |
| ! | GCTGCTGTGGGTTGTTCATT+TGG | + | chr8.2:14563967-14563986 | MS.gene62463:CDS | 50.0% |
| !! | GGAAGTGCTAAGCAAAGCTG+AGG | + | chr8.2:14562835-14562854 | MS.gene62463:CDS | 50.0% |
| CGCAGAGATCATCGGTGGTA+AGG | + | chr8.2:14562880-14562899 | MS.gene62463:CDS | 55.0% | |
| CTATGCGCAGAGATCATCGG+TGG | + | chr8.2:14562875-14562894 | MS.gene62463:CDS | 55.0% | |
| CTGAATCTACCTGCGAGAGG+GGG | + | chr8.2:14564130-14564149 | MS.gene62463:CDS | 55.0% | |
| GATGATCTCTGCGCATAGCC+AGG | - | chr8.2:14562873-14562892 | None:intergenic | 55.0% | |
| GCTGAATCTACCTGCGAGAG+GGG | + | chr8.2:14564129-14564148 | MS.gene62463:CDS | 55.0% | |
| TCCACAAGTTCAAGTGGCGG+CGG | - | chr8.2:14562998-14563017 | None:intergenic | 55.0% | |
| ! | AGCAAAGCTGAGGTGCCTTC+TGG | + | chr8.2:14562845-14562864 | MS.gene62463:CDS | 55.0% |
| AGTTCAAGTGGCGGCGGACA+CGG | - | chr8.2:14562992-14563011 | None:intergenic | 60.0% | |
| TCCGCCGCCACTTGAACTTG+TGG | + | chr8.2:14562994-14563013 | MS.gene62463:CDS | 60.0% | |
| TTCCATGTACCCCCTCTCGC+AGG | - | chr8.2:14564142-14564161 | None:intergenic | 60.0% | |
| ! | TACCTGCGAGAGGGGGTACA+TGG | + | chr8.2:14564137-14564156 | MS.gene62463:CDS | 60.0% |
| GCGCATAGCCAGGAGCCAGA+AGG | - | chr8.2:14562863-14562882 | None:intergenic | 65.0% | |
| !! | CTGAGGTGCCTTCTGGCTCC+TGG | + | chr8.2:14562852-14562871 | MS.gene62463:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 14562809 | 14564389 | 14562809 | ID=MS.gene62463 |
| chr8.2 | mRNA | 14562809 | 14564389 | 14562809 | ID=MS.gene62463.t1;Parent=MS.gene62463 |
| chr8.2 | exon | 14562809 | 14563210 | 14562809 | ID=MS.gene62463.t1.exon1;Parent=MS.gene62463.t1 |
| chr8.2 | CDS | 14562809 | 14563210 | 14562809 | ID=cds.MS.gene62463.t1;Parent=MS.gene62463.t1 |
| chr8.2 | exon | 14563607 | 14564389 | 14563607 | ID=MS.gene62463.t1.exon2;Parent=MS.gene62463.t1 |
| chr8.2 | CDS | 14563607 | 14564389 | 14563607 | ID=cds.MS.gene62463.t1;Parent=MS.gene62463.t1 |
| Gene Sequence |
| Protein sequence |
