Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62536.t1 | KEH20256.1 | 97.5 | 81 | 2 | 0 | 57 | 137 | 35 | 115 | 3.60E-37 | 165.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62536.t1 | Q54V77 | 75.3 | 81 | 20 | 0 | 57 | 137 | 112 | 192 | 1.1e-29 | 131.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62536.t1 | G7LJD6 | 97.5 | 81 | 2 | 0 | 57 | 137 | 112 | 192 | 2.6e-37 | 165.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054124 | MS.gene62536 | 0.834371 | 3.12E-56 | -1.69E-46 |
| MS.gene056167 | MS.gene62536 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene056168 | MS.gene62536 | 0.81195 | 5.42E-51 | -1.69E-46 |
| MS.gene060036 | MS.gene62536 | 0.845565 | 3.75E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62536.t1 | MTR_8g070540 | 97.531 | 81 | 2 | 0 | 57 | 137 | 112 | 192 | 5.13e-49 | 167 |
| MS.gene62536.t1 | MTR_8g070540 | 97.531 | 81 | 2 | 0 | 57 | 137 | 35 | 115 | 9.55e-49 | 168 |
| MS.gene62536.t1 | MTR_8g070540 | 97.531 | 81 | 2 | 0 | 57 | 137 | 112 | 192 | 3.13e-48 | 167 |
| MS.gene62536.t1 | MTR_8g446910 | 88.889 | 81 | 9 | 0 | 57 | 137 | 112 | 192 | 1.29e-43 | 155 |
| MS.gene62536.t1 | MTR_2g062770 | 88.889 | 81 | 9 | 0 | 57 | 137 | 63 | 143 | 2.35e-43 | 154 |
| MS.gene62536.t1 | MTR_2g062770 | 88.889 | 81 | 9 | 0 | 57 | 137 | 112 | 192 | 3.54e-43 | 154 |
| MS.gene62536.t1 | MTR_1g105050 | 88.312 | 77 | 9 | 0 | 138 | 214 | 45 | 121 | 4.77e-37 | 138 |
| MS.gene62536.t1 | MTR_1g087440 | 75.309 | 81 | 20 | 0 | 57 | 137 | 112 | 192 | 6.32e-36 | 132 |
| MS.gene62536.t1 | MTR_1g087440 | 75.309 | 81 | 20 | 0 | 57 | 137 | 112 | 192 | 2.06e-35 | 132 |
| MS.gene62536.t1 | MTR_5g005840 | 46.914 | 81 | 38 | 1 | 131 | 211 | 38 | 113 | 2.24e-14 | 72.4 |
| MS.gene62536.t1 | MTR_7g033400 | 86.111 | 36 | 5 | 0 | 28 | 63 | 131 | 166 | 3.08e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62536.t1 | AT4G20320 | 85.185 | 81 | 12 | 0 | 57 | 137 | 63 | 143 | 3.99e-42 | 150 |
| MS.gene62536.t1 | AT4G20320 | 85.185 | 81 | 12 | 0 | 57 | 137 | 112 | 192 | 6.01e-42 | 150 |
| MS.gene62536.t1 | AT4G20320 | 85.185 | 81 | 12 | 0 | 57 | 137 | 112 | 192 | 6.01e-42 | 150 |
| MS.gene62536.t1 | AT4G20320 | 85.185 | 81 | 12 | 0 | 57 | 137 | 112 | 192 | 6.01e-42 | 150 |
| MS.gene62536.t1 | AT4G20320 | 85.185 | 81 | 12 | 0 | 57 | 137 | 112 | 192 | 6.01e-42 | 150 |
| MS.gene62536.t1 | AT4G20320 | 85.185 | 81 | 12 | 0 | 57 | 137 | 112 | 192 | 6.01e-42 | 150 |
| MS.gene62536.t1 | AT1G30820 | 86.420 | 81 | 11 | 0 | 57 | 137 | 112 | 192 | 5.68e-41 | 148 |
| MS.gene62536.t1 | AT4G02120 | 76.543 | 81 | 19 | 0 | 57 | 137 | 112 | 192 | 2.20e-36 | 134 |
| MS.gene62536.t1 | AT4G02120 | 76.543 | 81 | 19 | 0 | 57 | 137 | 112 | 192 | 3.03e-36 | 134 |
| MS.gene62536.t1 | AT4G02120 | 76.543 | 81 | 19 | 0 | 57 | 137 | 112 | 192 | 5.90e-36 | 133 |
| MS.gene62536.t1 | AT4G02120 | 76.543 | 81 | 19 | 0 | 57 | 137 | 112 | 192 | 6.88e-36 | 133 |
| MS.gene62536.t1 | AT4G02120 | 76.543 | 81 | 19 | 0 | 57 | 137 | 112 | 192 | 7.40e-36 | 134 |
| MS.gene62536.t1 | AT3G12670 | 83.951 | 81 | 13 | 0 | 57 | 137 | 112 | 192 | 3.11e-34 | 129 |
| MS.gene62536.t1 | AT2G34890 | 70.370 | 81 | 24 | 0 | 57 | 137 | 112 | 192 | 1.56e-33 | 127 |
| MS.gene62536.t1 | AT3G06010 | 56.061 | 66 | 29 | 0 | 146 | 211 | 81 | 146 | 4.32e-17 | 80.5 |
| MS.gene62536.t1 | AT5G19310 | 52.174 | 69 | 33 | 0 | 143 | 211 | 66 | 134 | 4.19e-15 | 74.7 |
Find 54 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGCCTGCTTGAACTTTA+TGG | 0.109414 | 7.3:+69779022 | MS.gene62536:CDS |
| TGTCCTAATGCTTGAATAAA+AGG | 0.184572 | 7.3:-69777518 | None:intergenic |
| TTGAAACCTAATGCACATTT+CGG | 0.286770 | 7.3:-69778763 | None:intergenic |
| TGAAACCTAATGCACATTTC+GGG | 0.295111 | 7.3:-69778762 | None:intergenic |
| AGCTGATAAACTATTAGATA+TGG | 0.324806 | 7.3:+69779816 | MS.gene62536:CDS |
| ACGAGAGAACAAAGCGTATC+AGG | 0.355852 | 7.3:+69776756 | MS.gene62536:CDS |
| CAACGCCCGAAATGTGCATT+AGG | 0.375036 | 7.3:+69778757 | MS.gene62536:CDS |
| ATCTGTTATTAAATCATCTC+TGG | 0.403131 | 7.3:-69778713 | None:intergenic |
| TGATGTATGTGTCATAGAAT+TGG | 0.414144 | 7.3:+69777357 | MS.gene62536:CDS |
| TCACCAACAACATTTAAAAC+AGG | 0.420634 | 7.3:-69777905 | None:intergenic |
| TTACTGATGCTATTCAAGAT+TGG | 0.422674 | 7.3:+69777287 | MS.gene62536:CDS |
| TGAATAGCATCAGTAATATG+AGG | 0.441372 | 7.3:-69777280 | None:intergenic |
| GAACAAGCTTTGAGGAGAAA+AGG | 0.444601 | 7.3:-69777102 | None:intergenic |
| AACCAGAATTTCCTTCAAGC+AGG | 0.449262 | 7.3:+69778981 | MS.gene62536:intron |
| AATGTGGCAAAACATTTGAC+AGG | 0.450655 | 7.3:-69777128 | None:intergenic |
| AACAAGCTTTGAGGAGAAAA+GGG | 0.455396 | 7.3:-69777101 | None:intergenic |
| TCGTGAATCCAGGGTGATGT+AGG | 0.475436 | 7.3:+69778685 | MS.gene62536:intron |
| GCCGTCATCAAAATCAGATT+CGG | 0.478355 | 7.3:+69778806 | MS.gene62536:CDS |
| CAAGCAGGCACTTTGTCTGC+AGG | 0.482300 | 7.3:-69779012 | None:intergenic |
| GCTGATAAACTATTAGATAT+GGG | 0.483951 | 7.3:+69779817 | MS.gene62536:CDS |
| TGCATTAGGTTTCAAGTTGG+AGG | 0.484516 | 7.3:+69778771 | MS.gene62536:CDS |
| ACAGGGAAGAACAAGCTTTG+AGG | 0.486589 | 7.3:-69777110 | None:intergenic |
| AGGTCCTCTCCCCTGCTTGA+AGG | 0.492770 | 7.3:-69778992 | None:intergenic |
| CTATTCAAGATTGGATAGAA+AGG | 0.493049 | 7.3:+69777296 | MS.gene62536:CDS |
| TAAGTCAGTTCATCGAAGAT+TGG | 0.496387 | 7.3:-69779878 | None:intergenic |
| CGTAGACACGGTGTTATCCT+TGG | 0.499594 | 7.3:+69777066 | MS.gene62536:intron |
| CGTGAATCCAGGGTGATGTA+GGG | 0.521494 | 7.3:+69778686 | MS.gene62536:intron |
| TCTATGACACATACATCAGC+TGG | 0.524114 | 7.3:-69777352 | None:intergenic |
| ATTTCCTTCAAGCAGGGGAG+AGG | 0.529287 | 7.3:+69778988 | MS.gene62536:CDS |
| ACCAGAATTTCCTTCAAGCA+GGG | 0.542411 | 7.3:+69778982 | MS.gene62536:intron |
| ATAGAATTGGGTGGAACCAT+AGG | 0.547655 | 7.3:+69777370 | MS.gene62536:CDS |
| TTTCAAGTTGGAGGAAGCAA+TGG | 0.555075 | 7.3:+69778780 | MS.gene62536:CDS |
| CATCGGTTAAATGAGCTTCA+AGG | 0.558068 | 7.3:+69778829 | MS.gene62536:CDS |
| ATAACAGTGGATGGAAAAGA+AGG | 0.558749 | 7.3:+69777328 | MS.gene62536:CDS |
| TAATGCTTGAATAAAAGGCA+TGG | 0.559126 | 7.3:-69777513 | None:intergenic |
| GGACATTTCTTATATAGAGT+AGG | 0.560904 | 7.3:+69777536 | MS.gene62536:CDS |
| GATGTATGTGTCATAGAATT+GGG | 0.563816 | 7.3:+69777358 | MS.gene62536:CDS |
| ATCAAAATCAGATTCGGCAT+CGG | 0.566399 | 7.3:+69778812 | MS.gene62536:CDS |
| TATTCAAGATTGGATAGAAA+GGG | 0.568268 | 7.3:+69777297 | MS.gene62536:CDS |
| ATGTGCATTAGGTTTCAAGT+TGG | 0.572067 | 7.3:+69778768 | MS.gene62536:CDS |
| GCTTGAACTTTATGGACCGA+AGG | 0.590038 | 7.3:+69779030 | MS.gene62536:CDS |
| GTGGCCCACATAACAGTGGA+TGG | 0.595734 | 7.3:+69777319 | MS.gene62536:CDS |
| AAAAGCAACATTACGAAGAG+AGG | 0.600323 | 7.3:+69776719 | MS.gene62536:CDS |
| TCGGTCCATAAAGTTCAAGC+AGG | 0.601860 | 7.3:-69779027 | None:intergenic |
| CCAGAATTTCCTTCAAGCAG+GGG | 0.602893 | 7.3:+69778983 | MS.gene62536:intron |
| TCAGTTCATCGAAGATTGGA+CGG | 0.612341 | 7.3:-69779874 | None:intergenic |
| GAATAGCATCAGTAATATGA+GGG | 0.618254 | 7.3:-69777279 | None:intergenic |
| TCAAGATTGGATAGAAAGGG+TGG | 0.643735 | 7.3:+69777300 | MS.gene62536:CDS |
| CAACATTTAAAACAGGAACA+AGG | 0.654878 | 7.3:-69777898 | None:intergenic |
| AAGGGAAAGTGTGTTTACCA+AGG | 0.660911 | 7.3:-69777083 | None:intergenic |
| CAATGAACCTGTTTACAATG+TGG | 0.688997 | 7.3:-69777144 | None:intergenic |
| GTATGTGTCATAGAATTGGG+TGG | 0.689147 | 7.3:+69777361 | MS.gene62536:CDS |
| AAGGGTGGCCCACATAACAG+TGG | 0.694680 | 7.3:+69777315 | MS.gene62536:CDS |
| ATGTGGCAAAACATTTGACA+GGG | 0.718434 | 7.3:-69777127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAAAAACTATAAAA+AGG | - | chr7.3:69777772-69777791 | None:intergenic | 10.0% |
| !!! | TTATTTTCTGAAATTATTAT+CGG | + | chr7.3:69778365-69778384 | MS.gene62536:intron | 10.0% |
| !! | AAAACGAATAATTTAATCTA+GGG | + | chr7.3:69776924-69776943 | MS.gene62536:intron | 15.0% |
| !! | AATTTGAATTTAAATTCTTC+TGG | + | chr7.3:69777472-69777491 | MS.gene62536:intron | 15.0% |
| !!! | TCTAATTAAAATTGTTATTG+TGG | + | chr7.3:69777705-69777724 | MS.gene62536:intron | 15.0% |
| !! | AAAATATCACTTTCATTTAG+TGG | - | chr7.3:69778915-69778934 | None:intergenic | 20.0% |
| !! | AAACTAGAAAATAAACCAAT+CGG | - | chr7.3:69779508-69779527 | None:intergenic | 20.0% |
| !! | ATCATACTATTCTTGAAATT+CGG | + | chr7.3:69778476-69778495 | MS.gene62536:intron | 20.0% |
| !! | CTTATAACAAGTAATTCAAA+AGG | - | chr7.3:69779460-69779479 | None:intergenic | 20.0% |
| !! | GAAAACGAATAATTTAATCT+AGG | + | chr7.3:69776923-69776942 | MS.gene62536:intron | 20.0% |
| !! | GAATGTCAATGTTTATTAAT+GGG | + | chr7.3:69779672-69779691 | MS.gene62536:intron | 20.0% |
| !! | TCAAGAATAATATTTACCTT+CGG | - | chr7.3:69779049-69779068 | None:intergenic | 20.0% |
| !! | TGAATGTCAATGTTTATTAA+TGG | + | chr7.3:69779671-69779690 | MS.gene62536:intron | 20.0% |
| !! | TTAAAAAATATACTTCCACA+AGG | - | chr7.3:69779597-69779616 | None:intergenic | 20.0% |
| !!! | AACAATTTAAAACCAAAGAA+AGG | - | chr7.3:69777593-69777612 | None:intergenic | 20.0% |
| !!! | AAGTTTCTTAGATTTTGAAT+CGG | + | chr7.3:69776883-69776902 | MS.gene62536:intron | 20.0% |
| !!! | ACAATTTAAAACCAAAGAAA+GGG | - | chr7.3:69777592-69777611 | None:intergenic | 20.0% |
| !!! | ATTTTTTACATAGATCTCAA+AGG | - | chr7.3:69777959-69777978 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTTTGTTTTGAG+AGG | + | chr7.3:69777775-69777794 | MS.gene62536:intron | 20.0% |
| !!! | TTTGAATTACTTGTTATAAG+AGG | + | chr7.3:69779460-69779479 | MS.gene62536:intron | 20.0% |
| ! | AACAAAAAATGTTCTTCCAT+TGG | + | chr7.3:69779548-69779567 | MS.gene62536:intron | 25.0% |
| ! | AACAAGTAATTCAAAAGGAA+GGG | - | chr7.3:69779455-69779474 | None:intergenic | 25.0% |
| ! | AACTAGAAAATAAACCAATC+GGG | - | chr7.3:69779507-69779526 | None:intergenic | 25.0% |
| ! | ACAAAGATCTTCATGATATA+TGG | + | chr7.3:69777219-69777238 | MS.gene62536:intron | 25.0% |
| ! | AGCACATATATCATAGATTA+TGG | + | chr7.3:69779246-69779265 | MS.gene62536:intron | 25.0% |
| ! | AGCTGATAAACTATTAGATA+TGG | + | chr7.3:69779816-69779835 | MS.gene62536:CDS | 25.0% |
| ! | ATCTGTTATTAAATCATCTC+TGG | - | chr7.3:69778716-69778735 | None:intergenic | 25.0% |
| ! | CATTATAGTATATGCACAAA+AGG | + | chr7.3:69778429-69778448 | MS.gene62536:intron | 25.0% |
| ! | GAAATAGTTTCTAATCTGAA+TGG | + | chr7.3:69779694-69779713 | MS.gene62536:intron | 25.0% |
| ! | GCTGATAAACTATTAGATAT+GGG | + | chr7.3:69779817-69779836 | MS.gene62536:CDS | 25.0% |
| ! | TAACAAGTAATTCAAAAGGA+AGG | - | chr7.3:69779456-69779475 | None:intergenic | 25.0% |
| ! | TAATGTCTTACAACTCTAAA+TGG | + | chr7.3:69777933-69777952 | MS.gene62536:intron | 25.0% |
| ! | TATTCAAGATTGGATAGAAA+GGG | + | chr7.3:69777297-69777316 | MS.gene62536:CDS | 25.0% |
| ! | TCATACTATTCTTGAAATTC+GGG | + | chr7.3:69778477-69778496 | MS.gene62536:intron | 25.0% |
| !! | TGTATTTTACCGCAATAAAA+AGG | - | chr7.3:69777644-69777663 | None:intergenic | 25.0% |
| !! | TTAATGTCAATGTTTTCAGA+AGG | + | chr7.3:69779613-69779632 | MS.gene62536:intron | 25.0% |
| !! | TTTAGAGTAGAAAAACATCA+AGG | - | chr7.3:69779112-69779131 | None:intergenic | 25.0% |
| !! | TTTTTATTGCGGTAAAATAC+AGG | + | chr7.3:69777643-69777662 | MS.gene62536:intron | 25.0% |
| !!! | AATGGAAGAACATTTTTTGT+TGG | - | chr7.3:69779549-69779568 | None:intergenic | 25.0% |
| !!! | ATGGTGTTATTTTCTACTTT+AGG | + | chr7.3:69777252-69777271 | MS.gene62536:intron | 25.0% |
| !!! | ATGTCTGTAGATTTTGATAT+TGG | + | chr7.3:69779789-69779808 | MS.gene62536:intron | 25.0% |
| !!! | GACGTATAAGTTTTAAATTG+TGG | - | chr7.3:69777750-69777769 | None:intergenic | 25.0% |
| !!! | GATATATGGTTTTGATGTTA+TGG | + | chr7.3:69777233-69777252 | MS.gene62536:intron | 25.0% |
| !!! | GGTCAACAATTTTAGTAAAA+AGG | + | chr7.3:69778850-69778869 | MS.gene62536:intron | 25.0% |
| !!! | TTTGTTTTCTGAACATGAAA+AGG | - | chr7.3:69778012-69778031 | None:intergenic | 25.0% |
| AAAATAAACCAATCGGGATA+TGG | - | chr7.3:69779501-69779520 | None:intergenic | 30.0% | |
| ACTAATACACAAATACCACA+AGG | - | chr7.3:69779745-69779764 | None:intergenic | 30.0% | |
| ACTCTAACCAACATAAATCA+CGG | - | chr7.3:69778622-69778641 | None:intergenic | 30.0% | |
| AGAATGAAAAGTAAGCAAGA+TGG | - | chr7.3:69779394-69779413 | None:intergenic | 30.0% | |
| AGCAAATATACGTGCAATAA+AGG | - | chr7.3:69778881-69778900 | None:intergenic | 30.0% | |
| ATGTTTCTTTGCTAGCAATA+TGG | - | chr7.3:69779300-69779319 | None:intergenic | 30.0% | |
| ATTTAAATTCTTCTGGATGC+AGG | + | chr7.3:69777479-69777498 | MS.gene62536:intron | 30.0% | |
| CTATTCAAGATTGGATAGAA+AGG | + | chr7.3:69777296-69777315 | MS.gene62536:CDS | 30.0% | |
| GAATAGCATCAGTAATATGA+GGG | - | chr7.3:69777282-69777301 | None:intergenic | 30.0% | |
| GAATGAAAAGTAAGCAAGAT+GGG | - | chr7.3:69779393-69779412 | None:intergenic | 30.0% | |
| GATGTATGTGTCATAGAATT+GGG | + | chr7.3:69777358-69777377 | MS.gene62536:CDS | 30.0% | |
| GGACATTTCTTATATAGAGT+AGG | + | chr7.3:69777536-69777555 | MS.gene62536:CDS | 30.0% | |
| GTACACTAAACATTGAAGAA+AGG | - | chr7.3:69779073-69779092 | None:intergenic | 30.0% | |
| TAATGCTTGAATAAAAGGCA+TGG | - | chr7.3:69777516-69777535 | None:intergenic | 30.0% | |
| TGAATAGCATCAGTAATATG+AGG | - | chr7.3:69777283-69777302 | None:intergenic | 30.0% | |
| TGATGTATGTGTCATAGAAT+TGG | + | chr7.3:69777357-69777376 | MS.gene62536:CDS | 30.0% | |
| TGTCCTAATGCTTGAATAAA+AGG | - | chr7.3:69777521-69777540 | None:intergenic | 30.0% | |
| TGTTACATATGTTCATTTGC+AGG | + | chr7.3:69777845-69777864 | MS.gene62536:intron | 30.0% | |
| TGTTTCTTTGCTAGCAATAT+GGG | - | chr7.3:69779299-69779318 | None:intergenic | 30.0% | |
| TTACTGATGCTATTCAAGAT+TGG | + | chr7.3:69777287-69777306 | MS.gene62536:CDS | 30.0% | |
| TTGAAACCTAATGCACATTT+CGG | - | chr7.3:69778766-69778785 | None:intergenic | 30.0% | |
| ! | ATGCCTTTTATTCAAGCATT+AGG | + | chr7.3:69777515-69777534 | MS.gene62536:CDS | 30.0% |
| ! | CAACATTTAAAACAGGAACA+AGG | - | chr7.3:69777901-69777920 | None:intergenic | 30.0% |
| ! | GTTTCAATCTGAAGTATATG+TGG | - | chr7.3:69778294-69778313 | None:intergenic | 30.0% |
| ! | TCAATGTTTTCAGAAGGAAT+TGG | + | chr7.3:69779619-69779638 | MS.gene62536:intron | 30.0% |
| ! | TCACCAACAACATTTAAAAC+AGG | - | chr7.3:69777908-69777927 | None:intergenic | 30.0% |
| !! | GTTCCTGTTTTAAATGTTGT+TGG | + | chr7.3:69777902-69777921 | MS.gene62536:CDS | 30.0% |
| !! | TGTTTTCAAGATTGTACCTA+TGG | - | chr7.3:69777389-69777408 | None:intergenic | 30.0% |
| !! | TTCTATTTTTCGTGAATCCA+GGG | + | chr7.3:69778676-69778695 | MS.gene62536:intron | 30.0% |
| !! | TTTCTATTTTTCGTGAATCC+AGG | + | chr7.3:69778675-69778694 | MS.gene62536:intron | 30.0% |
| !!! | CATTTTTTGTTGGTTCTATG+AGG | - | chr7.3:69779539-69779558 | None:intergenic | 30.0% |
| !!! | GTTTTGATTGTCATGTGTTT+TGG | + | chr7.3:69778504-69778523 | MS.gene62536:intron | 30.0% |
| AAAAGCAACATTACGAAGAG+AGG | + | chr7.3:69776719-69776738 | MS.gene62536:CDS | 35.0% | |
| AATGTGGCAAAACATTTGAC+AGG | - | chr7.3:69777131-69777150 | None:intergenic | 35.0% | |
| AGTAAGTTCAAACCCAAAAG+TGG | - | chr7.3:69779220-69779239 | None:intergenic | 35.0% | |
| ATAACAGTGGATGGAAAAGA+AGG | + | chr7.3:69777328-69777347 | MS.gene62536:CDS | 35.0% | |
| ATAATCTCTCTCCAAACAAC+GGG | - | chr7.3:69779426-69779445 | None:intergenic | 35.0% | |
| ATAATTAGCCATATCCCGAT+TGG | + | chr7.3:69779490-69779509 | MS.gene62536:intron | 35.0% | |
| ATCAAAATCAGATTCGGCAT+CGG | + | chr7.3:69778812-69778831 | MS.gene62536:CDS | 35.0% | |
| ATGTGGCAAAACATTTGACA+GGG | - | chr7.3:69777130-69777149 | None:intergenic | 35.0% | |
| CAAATGTACCAGTGTTGTAA+CGG | - | chr7.3:69778329-69778348 | None:intergenic | 35.0% | |
| CAATCTTGAAAACATTCCTC+AGG | + | chr7.3:69777395-69777414 | MS.gene62536:intron | 35.0% | |
| CAATGAACCTGTTTACAATG+TGG | - | chr7.3:69777147-69777166 | None:intergenic | 35.0% | |
| CAATTTCATCACGCATTGTT+TGG | + | chr7.3:69776789-69776808 | MS.gene62536:intron | 35.0% | |
| CATAATCTCTCTCCAAACAA+CGG | - | chr7.3:69779427-69779446 | None:intergenic | 35.0% | |
| GACTAAGATCTTTAACCTTG+TGG | + | chr7.3:69779727-69779746 | MS.gene62536:intron | 35.0% | |
| GTAAGTTCAAACCCAAAAGT+GGG | - | chr7.3:69779219-69779238 | None:intergenic | 35.0% | |
| TAAGTTCAAACCCAAAAGTG+GGG | - | chr7.3:69779218-69779237 | None:intergenic | 35.0% | |
| TACAAAGTTTGCCCTTTCTT+TGG | + | chr7.3:69777578-69777597 | MS.gene62536:intron | 35.0% | |
| TCTACGCATTTGGATGTAAA+GGG | - | chr7.3:69777052-69777071 | None:intergenic | 35.0% | |
| TGAAACCTAATGCACATTTC+GGG | - | chr7.3:69778765-69778784 | None:intergenic | 35.0% | |
| ! | ATGTGCATTAGGTTTCAAGT+TGG | + | chr7.3:69778768-69778787 | MS.gene62536:CDS | 35.0% |
| ! | ATTGAGTTAAGGTGCTTACT+TGG | - | chr7.3:69779574-69779593 | None:intergenic | 35.0% |
| ! | GTGCACATTTGTTGATATGT+AGG | - | chr7.3:69778264-69778283 | None:intergenic | 35.0% |
| ! | TGTTTTGCCACATTGTAAAC+AGG | + | chr7.3:69777137-69777156 | MS.gene62536:CDS | 35.0% |
| ! | TTTTCCATCCACTGTTATGT+GGG | - | chr7.3:69777326-69777345 | None:intergenic | 35.0% |
| !! | AACAAGCTTTGAGGAGAAAA+GGG | - | chr7.3:69777104-69777123 | None:intergenic | 35.0% |
| !!! | ATGTTGCTTTTCGTTTGAGT+CGG | - | chr7.3:69776710-69776729 | None:intergenic | 35.0% |
| AACCAGAATTTCCTTCAAGC+AGG | + | chr7.3:69778981-69779000 | MS.gene62536:intron | 40.0% | |
| AAGTGCCTGCTTGAACTTTA+TGG | + | chr7.3:69779022-69779041 | MS.gene62536:CDS | 40.0% | |
| AAGTTCAAACCCAAAAGTGG+GGG | - | chr7.3:69779217-69779236 | None:intergenic | 40.0% | |
| ACCAGAATTTCCTTCAAGCA+GGG | + | chr7.3:69778982-69779001 | MS.gene62536:intron | 40.0% | |
| AGTGTGCACAACAAAGCTAT+AGG | - | chr7.3:69778561-69778580 | None:intergenic | 40.0% | |
| ATAGAATTGGGTGGAACCAT+AGG | + | chr7.3:69777370-69777389 | MS.gene62536:CDS | 40.0% | |
| CTTCCACAAGGATTGAGTTA+AGG | - | chr7.3:69779585-69779604 | None:intergenic | 40.0% | |
| GCCGTCATCAAAATCAGATT+CGG | + | chr7.3:69778806-69778825 | MS.gene62536:CDS | 40.0% | |
| GTATGTGTCATAGAATTGGG+TGG | + | chr7.3:69777361-69777380 | MS.gene62536:CDS | 40.0% | |
| GTCTACGCATTTGGATGTAA+AGG | - | chr7.3:69777053-69777072 | None:intergenic | 40.0% | |
| TACATCCAAATGCGTAGACA+CGG | + | chr7.3:69777054-69777073 | MS.gene62536:intron | 40.0% | |
| TACCGCAATAAAAAGGCTTC+CGG | - | chr7.3:69777637-69777656 | None:intergenic | 40.0% | |
| TCAAGATTGGATAGAAAGGG+TGG | + | chr7.3:69777300-69777319 | MS.gene62536:CDS | 40.0% | |
| TCTATGACACATACATCAGC+TGG | - | chr7.3:69777355-69777374 | None:intergenic | 40.0% | |
| TTGTGTGCCGTGATTTATGT+TGG | + | chr7.3:69778612-69778631 | MS.gene62536:intron | 40.0% | |
| ! | AAGGGAAAGTGTGTTTACCA+AGG | - | chr7.3:69777086-69777105 | None:intergenic | 40.0% |
| ! | AGGTGCTAACAACTTTTGCT+TGG | + | chr7.3:69777865-69777884 | MS.gene62536:intron | 40.0% |
| ! | CATCGGTTAAATGAGCTTCA+AGG | + | chr7.3:69778829-69778848 | MS.gene62536:CDS | 40.0% |
| ! | CTTCAGTTTTTCCCGTTGTT+TGG | + | chr7.3:69779412-69779431 | MS.gene62536:intron | 40.0% |
| ! | CTTTTCCATCCACTGTTATG+TGG | - | chr7.3:69777327-69777346 | None:intergenic | 40.0% |
| !! | GAACAAGCTTTGAGGAGAAA+AGG | - | chr7.3:69777105-69777124 | None:intergenic | 40.0% |
| !! | GCCGAATCTGATTTTGATGA+CGG | - | chr7.3:69778810-69778829 | None:intergenic | 40.0% |
| !! | TGCATTAGGTTTCAAGTTGG+AGG | + | chr7.3:69778771-69778790 | MS.gene62536:CDS | 40.0% |
| !! | TTTCAAGTTGGAGGAAGCAA+TGG | + | chr7.3:69778780-69778799 | MS.gene62536:CDS | 40.0% |
| !!! | TGTGGCTGCAATTTTAGTTG+TGG | + | chr7.3:69777723-69777742 | MS.gene62536:intron | 40.0% |
| ACAGGGAAGAACAAGCTTTG+AGG | - | chr7.3:69777113-69777132 | None:intergenic | 45.0% | |
| ACATTCCTCAGGCTTCTTCA+TGG | + | chr7.3:69777406-69777425 | MS.gene62536:intron | 45.0% | |
| ACGAGAGAACAAAGCGTATC+AGG | + | chr7.3:69776756-69776775 | MS.gene62536:CDS | 45.0% | |
| AGATTTGTGGAGTCAGTCCT+TGG | - | chr7.3:69778068-69778087 | None:intergenic | 45.0% | |
| AGTTCAAACCCAAAAGTGGG+GGG | - | chr7.3:69779216-69779235 | None:intergenic | 45.0% | |
| CCAGAATTTCCTTCAAGCAG+GGG | + | chr7.3:69778983-69779002 | MS.gene62536:intron | 45.0% | |
| GCACCTTAACTCAATCCTTG+TGG | + | chr7.3:69779579-69779598 | MS.gene62536:intron | 45.0% | |
| GCTTGAACTTTATGGACCGA+AGG | + | chr7.3:69779030-69779049 | MS.gene62536:CDS | 45.0% | |
| TAACACCGTGTCTACGCATT+TGG | - | chr7.3:69777062-69777081 | None:intergenic | 45.0% | |
| TCGGTCCATAAAGTTCAAGC+AGG | - | chr7.3:69779030-69779049 | None:intergenic | 45.0% | |
| TCGTATGTCCGTTACAACAC+TGG | + | chr7.3:69778318-69778337 | MS.gene62536:intron | 45.0% | |
| TCTAACCATGAAGAAGCCTG+AGG | - | chr7.3:69777414-69777433 | None:intergenic | 45.0% | |
| ! | AGGACTGACTCCACAAATCT+TGG | + | chr7.3:69778068-69778087 | MS.gene62536:intron | 45.0% |
| ! | CACCGGAAGCCTTTTTATTG+CGG | + | chr7.3:69777632-69777651 | MS.gene62536:intron | 45.0% |
| ! | CGCATTGTTTGGTTCAGATC+TGG | + | chr7.3:69776800-69776819 | MS.gene62536:intron | 45.0% |
| ! | TAAGGTGCTTACTTGGCCAA+TGG | - | chr7.3:69779567-69779586 | None:intergenic | 45.0% |
| ! | TGCTTTTCGTTTGAGTCGGA+AGG | - | chr7.3:69776706-69776725 | None:intergenic | 45.0% |
| AGAGAGTGACCATTGTGCTG+CGG | - | chr7.3:69778098-69778117 | None:intergenic | 50.0% | |
| AGCAAGATGGGAACTGCACA+AGG | - | chr7.3:69779381-69779400 | None:intergenic | 50.0% | |
| ATTTCCTTCAAGCAGGGGAG+AGG | + | chr7.3:69778988-69779007 | MS.gene62536:CDS | 50.0% | |
| CAACGCCCGAAATGTGCATT+AGG | + | chr7.3:69778757-69778776 | MS.gene62536:CDS | 50.0% | |
| CCAACACAGCATAGTGTGAG+AGG | + | chr7.3:69778033-69778052 | MS.gene62536:intron | 50.0% | |
| CCCCTGCTTGAAGGAAATTC+TGG | - | chr7.3:69778986-69779005 | None:intergenic | 50.0% | |
| CCTCTCACACTATGCTGTGT+TGG | - | chr7.3:69778036-69778055 | None:intergenic | 50.0% | |
| CGTGAATCCAGGGTGATGTA+GGG | + | chr7.3:69778686-69778705 | MS.gene62536:intron | 50.0% | |
| GTGAGAGGACTTAGAAGCCA+AGG | + | chr7.3:69778048-69778067 | MS.gene62536:intron | 50.0% | |
| GTTCAAACCCAAAAGTGGGG+GGG | - | chr7.3:69779215-69779234 | None:intergenic | 50.0% | |
| TCGTGAATCCAGGGTGATGT+AGG | + | chr7.3:69778685-69778704 | MS.gene62536:intron | 50.0% | |
| TTGTAGTCCATCCCACGTAG+CGG | + | chr7.3:69779149-69779168 | MS.gene62536:intron | 50.0% | |
| !! | CGTAGACACGGTGTTATCCT+TGG | + | chr7.3:69777066-69777085 | MS.gene62536:intron | 50.0% |
| !! | TACGTGGGATGGACTACAAC+AGG | - | chr7.3:69779148-69779167 | None:intergenic | 50.0% |
| AAGGGTGGCCCACATAACAG+TGG | + | chr7.3:69777315-69777334 | MS.gene62536:CDS | 55.0% | |
| ACCTCAGAATCCCGCTACGT+GGG | - | chr7.3:69779163-69779182 | None:intergenic | 55.0% | |
| CAAGCAGGCACTTTGTCTGC+AGG | - | chr7.3:69779015-69779034 | None:intergenic | 55.0% | |
| CTGCGGCAAGCCAAGATTTG+TGG | - | chr7.3:69778081-69778100 | None:intergenic | 55.0% | |
| GTGGCCCACATAACAGTGGA+TGG | + | chr7.3:69777319-69777338 | MS.gene62536:CDS | 55.0% | |
| TGGAACTCCCTACATCACCC+TGG | - | chr7.3:69778696-69778715 | None:intergenic | 55.0% | |
| TGTAGTCCATCCCACGTAGC+GGG | + | chr7.3:69779150-69779169 | MS.gene62536:intron | 55.0% | |
| TTCCGGTGCAAACGCTGTTG+CGG | - | chr7.3:69777620-69777639 | None:intergenic | 55.0% | |
| ! | AATTGCCTCCCCCCCACTTT+TGG | + | chr7.3:69779204-69779223 | MS.gene62536:intron | 55.0% |
| !! | ATTGCCTCCCCCCCACTTTT+GGG | + | chr7.3:69779205-69779224 | MS.gene62536:intron | 55.0% |
| AAGTGGGGGGGAGGCAATTC+TGG | - | chr7.3:69779203-69779222 | None:intergenic | 60.0% | |
| AGCCGCAACAGCGTTTGCAC+CGG | + | chr7.3:69777615-69777634 | MS.gene62536:intron | 60.0% | |
| AGGTCCTCTCCCCTGCTTGA+AGG | - | chr7.3:69778995-69779014 | None:intergenic | 60.0% | |
| CAAACCCAAAAGTGGGGGGG+AGG | - | chr7.3:69779212-69779231 | None:intergenic | 60.0% | |
| CACCTCAGAATCCCGCTACG+TGG | - | chr7.3:69779164-69779183 | None:intergenic | 60.0% | |
| CAGAATCCCGCTACGTGGGA+TGG | - | chr7.3:69779159-69779178 | None:intergenic | 60.0% | |
| ! | TCCCACGTAGCGGGATTCTG+AGG | + | chr7.3:69779159-69779178 | MS.gene62536:intron | 60.0% |
| !! | CTTGGCTTGCCGCAGCACAA+TGG | + | chr7.3:69778086-69778105 | MS.gene62536:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 69776695 | 69779891 | 69776695 | ID=MS.gene62536 |
| chr7.3 | mRNA | 69776695 | 69779891 | 69776695 | ID=MS.gene62536.t1;Parent=MS.gene62536 |
| chr7.3 | exon | 69776695 | 69776777 | 69776695 | ID=MS.gene62536.t1.exon1;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69776695 | 69776777 | 69776695 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| chr7.3 | exon | 69777071 | 69777158 | 69777071 | ID=MS.gene62536.t1.exon2;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69777071 | 69777158 | 69777071 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| chr7.3 | exon | 69777274 | 69777391 | 69777274 | ID=MS.gene62536.t1.exon3;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69777274 | 69777391 | 69777274 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| chr7.3 | exon | 69777501 | 69777557 | 69777501 | ID=MS.gene62536.t1.exon4;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69777501 | 69777557 | 69777501 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| chr7.3 | exon | 69777867 | 69777931 | 69777867 | ID=MS.gene62536.t1.exon5;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69777867 | 69777931 | 69777867 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| chr7.3 | exon | 69778697 | 69778850 | 69778697 | ID=MS.gene62536.t1.exon6;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69778697 | 69778850 | 69778697 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| chr7.3 | exon | 69778987 | 69779051 | 69778987 | ID=MS.gene62536.t1.exon7;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69778987 | 69779051 | 69778987 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| chr7.3 | exon | 69779799 | 69779891 | 69779799 | ID=MS.gene62536.t1.exon8;Parent=MS.gene62536.t1 |
| chr7.3 | CDS | 69779799 | 69779891 | 69779799 | ID=cds.MS.gene62536.t1;Parent=MS.gene62536.t1 |
| Gene Sequence |
| Protein sequence |
