Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62573.t1 | XP_003622202.1 | 96.3 | 465 | 17 | 0 | 1 | 465 | 1 | 465 | 1.20E-257 | 898.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62573.t1 | Q94IG7 | 68.7 | 460 | 141 | 2 | 8 | 465 | 37 | 495 | 1.0e-188 | 661.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62573.t1 | G7L3C0 | 96.3 | 465 | 17 | 0 | 1 | 465 | 1 | 465 | 8.6e-258 | 898.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene62573 | 0.819041 | 1.43E-52 | -1.69E-46 |
MS.gene060423 | MS.gene62573 | 0.85594 | 4.50E-62 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62573.t1 | MTR_7g031310 | 96.344 | 465 | 17 | 0 | 1 | 465 | 1 | 465 | 0.0 | 923 |
MS.gene62573.t1 | MTR_1g085730 | 30.573 | 471 | 283 | 17 | 16 | 468 | 73 | 517 | 5.98e-49 | 176 |
MS.gene62573.t1 | MTR_1g085730 | 31.757 | 296 | 178 | 10 | 16 | 303 | 73 | 352 | 2.36e-31 | 124 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62573.t1 | AT5G14220 | 67.585 | 472 | 143 | 4 | 1 | 465 | 1 | 469 | 0.0 | 657 |
MS.gene62573.t1 | AT5G14220 | 67.585 | 472 | 143 | 4 | 1 | 465 | 49 | 517 | 0.0 | 657 |
MS.gene62573.t1 | AT5G14220 | 63.983 | 472 | 130 | 4 | 1 | 465 | 1 | 439 | 0.0 | 605 |
MS.gene62573.t1 | AT5G14220 | 66.828 | 413 | 130 | 3 | 57 | 465 | 2 | 411 | 0.0 | 583 |
MS.gene62573.t1 | AT5G14220 | 66.828 | 413 | 130 | 3 | 57 | 465 | 2 | 411 | 0.0 | 583 |
MS.gene62573.t1 | AT4G01690 | 29.449 | 472 | 287 | 14 | 16 | 468 | 59 | 503 | 7.39e-44 | 162 |
MS.gene62573.t1 | AT4G01690 | 29.730 | 407 | 249 | 11 | 16 | 407 | 59 | 443 | 1.14e-38 | 147 |
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCCAGAGCTATGGAATT+TGG | 0.164490 | 7.3:+68864898 | MS.gene62573:CDS |
CCTTTATATGGTCATAACTA+TGG | 0.165882 | 7.3:+68868903 | MS.gene62573:CDS |
GCTTTACAATCCAGCGTATT+TGG | 0.185895 | 7.3:+68865947 | MS.gene62573:CDS |
AGATTCTTCGAACGCCATTT+TGG | 0.217787 | 7.3:+68863818 | MS.gene62573:CDS |
CTTAATAACCACCTTTAAAA+AGG | 0.225514 | 7.3:+68868152 | MS.gene62573:CDS |
CATCTCTATACCACCTTCAT+AGG | 0.233270 | 7.3:+68868397 | MS.gene62573:CDS |
TCTATGCTGGTAAGTTCTTA+TGG | 0.237206 | 7.3:+68868976 | MS.gene62573:CDS |
ACAATTGCAGCCATTTCTTC+TGG | 0.259910 | 7.3:+68868868 | MS.gene62573:intron |
TCTTGAAGCAATTGACAAAA+TGG | 0.277093 | 7.3:+68868932 | MS.gene62573:CDS |
GAAAATGAAATAGAGGTTAA+AGG | 0.282471 | 7.3:+68862351 | MS.gene62573:CDS |
AGTAAAGGCTTTCCTTTATA+TGG | 0.287943 | 7.3:+68868891 | MS.gene62573:CDS |
AAGAGACCACTGGAGGGTTT+TGG | 0.296122 | 7.3:+68868183 | MS.gene62573:CDS |
TTTCTCGAGATGGGCTAGTT+TGG | 0.303459 | 7.3:+68861645 | MS.gene62573:CDS |
TTCTCGAGATGGGCTAGTTT+GGG | 0.308981 | 7.3:+68861646 | MS.gene62573:CDS |
CCTTCAAAAGAGCAACAAAA+TGG | 0.315816 | 7.3:+68868216 | MS.gene62573:CDS |
CATATACCTCTTTCCCAAAA+TGG | 0.334289 | 7.3:-68863832 | None:intergenic |
TTCTCCAAATTCCATAGCTC+TGG | 0.342861 | 7.3:-68864902 | None:intergenic |
AGGTTTGGCTCGATTATTGC+AGG | 0.386290 | 7.3:+68865923 | MS.gene62573:intron |
CTGTTGTTGGTGCTGGTGTA+AGG | 0.394896 | 7.3:+68860462 | MS.gene62573:CDS |
AAAGCTGTTGGGAGCGGAGG+GGG | 0.398693 | 7.3:+68868774 | MS.gene62573:CDS |
TAAGACTGAGAGTGGTAAAT+AGG | 0.402238 | 7.3:-68868133 | None:intergenic |
GTTAAAAGAGTTGCTGTTGT+TGG | 0.430484 | 7.3:+68860449 | MS.gene62573:CDS |
GAAGTTCCCCATCGCAGAAC+TGG | 0.430766 | 7.3:+68866280 | MS.gene62573:CDS |
AGCCTTTACTCCAGAAGAAA+TGG | 0.436498 | 7.3:-68868878 | None:intergenic |
CCATAGTTATGACCATATAA+AGG | 0.439671 | 7.3:-68868903 | None:intergenic |
AGCTATGGAATTTGGAGAAA+AGG | 0.440643 | 7.3:+68864906 | MS.gene62573:CDS |
ATATCACTGGGTGCTCGATC+TGG | 0.441880 | 7.3:-68868373 | None:intergenic |
AGGTTTAGCACACCTTTCTT+CGG | 0.447771 | 7.3:-68863686 | None:intergenic |
AAAGGTTTGATTGATGCTCT+TGG | 0.449228 | 7.3:+68862369 | MS.gene62573:CDS |
CTAGCAAGACATACCAGAAC+TGG | 0.452360 | 7.3:-68862711 | None:intergenic |
ATCTCTATACCACCTTCATA+GGG | 0.462355 | 7.3:+68868398 | MS.gene62573:CDS |
CAGTAGTGCAGCAGGATTTG+TGG | 0.463978 | 7.3:-68862863 | None:intergenic |
AGCCATTTCTTCTGGAGTAA+AGG | 0.466548 | 7.3:+68868876 | MS.gene62573:intron |
CTTTATATGGTCATAACTAT+GGG | 0.469339 | 7.3:+68868904 | MS.gene62573:CDS |
AGTAGTGCAGCAGGATTTGT+GGG | 0.470112 | 7.3:-68862862 | None:intergenic |
TTGCTCTTCAGTAGTGCAGC+AGG | 0.472490 | 7.3:-68862871 | None:intergenic |
AGAGTTGCTGTTGTTGGTGC+TGG | 0.474709 | 7.3:+68860455 | MS.gene62573:CDS |
AGAAAGCTGTTGGGAGCGGA+GGG | 0.479152 | 7.3:+68868772 | MS.gene62573:CDS |
ACTTCTTTCTGCACAATCAA+AGG | 0.479775 | 7.3:+68862894 | MS.gene62573:CDS |
CTAAGAACTGTTTCTCGAGA+TGG | 0.486149 | 7.3:+68861635 | MS.gene62573:CDS |
CCGCTCCCAACAGCTTTCTC+AGG | 0.488618 | 7.3:-68868768 | None:intergenic |
TTCTGACCTGAGAAAGCTGT+TGG | 0.492675 | 7.3:+68868762 | MS.gene62573:CDS |
TCTCCAAATTCCATAGCTCT+GGG | 0.495582 | 7.3:-68864901 | None:intergenic |
GAGAAAGCTGTTGGGAGCGG+AGG | 0.496482 | 7.3:+68868771 | MS.gene62573:CDS |
TCCATAGCTCTGGGAAAGAA+TGG | 0.499467 | 7.3:-68864892 | None:intergenic |
TTTATGACACAGGCTCCTCT+TGG | 0.512858 | 7.3:+68867777 | MS.gene62573:intron |
GGTATAGAGATGCATATCAC+TGG | 0.515192 | 7.3:-68868386 | None:intergenic |
TAAGAACTGTTTCTCGAGAT+GGG | 0.524079 | 7.3:+68861636 | MS.gene62573:CDS |
GCACTTGTACCTCCAACAAA+AGG | 0.527158 | 7.3:-68864701 | None:intergenic |
CCTGAGAAAGCTGTTGGGAG+CGG | 0.532148 | 7.3:+68868768 | MS.gene62573:CDS |
GCAGACGGAAAATGAAATAG+AGG | 0.532287 | 7.3:+68862344 | MS.gene62573:intron |
GATACATTGTGCAAAGAGCT+TGG | 0.533819 | 7.3:+68866201 | MS.gene62573:CDS |
TCTGACCTGAGAAAGCTGTT+GGG | 0.538599 | 7.3:+68868763 | MS.gene62573:CDS |
GGTTTGGCTCGATTATTGCA+GGG | 0.539597 | 7.3:+68865924 | MS.gene62573:intron |
TGACATTAAATTAAATGCGA+AGG | 0.544078 | 7.3:+68866230 | MS.gene62573:CDS |
ACCTCGGGAAGAAAATTAAG+TGG | 0.552598 | 7.3:-68867843 | None:intergenic |
GCCATTCTTTCCCAGAGCTA+TGG | 0.553417 | 7.3:+68864891 | MS.gene62573:CDS |
CAACTCACAGAAAGAGACTC+AGG | 0.553502 | 7.3:-68864731 | None:intergenic |
TTTGAAGCTGATGGAAGAGC+TGG | 0.554280 | 7.3:+68861605 | MS.gene62573:CDS |
GTAACTGTATTTGAAGCTGA+TGG | 0.558846 | 7.3:+68861596 | MS.gene62573:CDS |
TAATAGACCAGTTCTGCGAT+GGG | 0.560444 | 7.3:-68866287 | None:intergenic |
GTAATAGACCAGTTCTGCGA+TGG | 0.568471 | 7.3:-68866288 | None:intergenic |
GTGATGAAAATTCCGAAGAA+AGG | 0.570030 | 7.3:+68863674 | MS.gene62573:CDS |
GGAGAATGTAAAGAGACCAC+TGG | 0.579052 | 7.3:+68868173 | MS.gene62573:CDS |
GTGGTTATTAAGACTGAGAG+TGG | 0.592796 | 7.3:-68868141 | None:intergenic |
TAGCGCTTATGCTGTGACAA+TGG | 0.594696 | 7.3:-68862669 | None:intergenic |
GGAAGAAAATTAAGTGGGAA+GGG | 0.595223 | 7.3:-68867837 | None:intergenic |
AAGAAAATTAAGTGGGAAGG+GGG | 0.598436 | 7.3:-68867835 | None:intergenic |
GAAGAAAATTAAGTGGGAAG+GGG | 0.602293 | 7.3:-68867836 | None:intergenic |
AGATGGGCTAGTTTGGGACG+AGG | 0.609404 | 7.3:+68861652 | MS.gene62573:CDS |
CTCTATACCACCTTCATAGG+GGG | 0.610093 | 7.3:+68868400 | MS.gene62573:CDS |
TGTTGATGCAGTAATTATGA+CGG | 0.611035 | 7.3:+68866338 | MS.gene62573:CDS |
GATGGGCTAGTTTGGGACGA+GGG | 0.612777 | 7.3:+68861653 | MS.gene62573:CDS |
GAAGCTGATGGAAGAGCTGG+AGG | 0.613684 | 7.3:+68861608 | MS.gene62573:CDS |
GGGAAGAAAATTAAGTGGGA+AGG | 0.613702 | 7.3:-68867838 | None:intergenic |
GGACGAGGGAGCTAATACAA+TGG | 0.617770 | 7.3:+68861667 | MS.gene62573:CDS |
GTTTGGCTCGATTATTGCAG+GGG | 0.618555 | 7.3:+68865925 | MS.gene62573:CDS |
ATGACATACTTGACGAATGT+GGG | 0.618696 | 7.3:-68868799 | None:intergenic |
GAAAGCTGTTGGGAGCGGAG+GGG | 0.628779 | 7.3:+68868773 | MS.gene62573:CDS |
CCTCGGGAAGAAAATTAAGT+GGG | 0.629739 | 7.3:-68867842 | None:intergenic |
AACTCACAGAAAGAGACTCA+GGG | 0.633776 | 7.3:-68864730 | None:intergenic |
GTATAGAGATGCATATCACT+GGG | 0.643232 | 7.3:-68868385 | None:intergenic |
AGAAAGAGACTCAGGGTCTG+CGG | 0.643465 | 7.3:-68864723 | None:intergenic |
TCTCTATACCACCTTCATAG+GGG | 0.648326 | 7.3:+68868399 | MS.gene62573:CDS |
GAATGTAAAGAGACCACTGG+AGG | 0.665011 | 7.3:+68868176 | MS.gene62573:CDS |
ATGTCTCTGACGTTACCAAG+AGG | 0.674061 | 7.3:-68867792 | None:intergenic |
AGAACTCCAAAACCCTCCAG+TGG | 0.680120 | 7.3:-68868189 | None:intergenic |
CTCCAACAAAAGGATCAATG+AGG | 0.687378 | 7.3:-68864691 | None:intergenic |
ACACTAGCTTACAGTCACGA+TGG | 0.689247 | 7.3:+68866258 | MS.gene62573:CDS |
GCTTACAAACTGAAATCACA+TGG | 0.690225 | 7.3:+68861566 | MS.gene62573:CDS |
AATAGACCAGTTCTGCGATG+GGG | 0.696683 | 7.3:-68866286 | None:intergenic |
GATGACATACTTGACGAATG+TGG | 0.697352 | 7.3:-68868800 | None:intergenic |
AATGTAAAGAGACCACTGGA+GGG | 0.707965 | 7.3:+68868177 | MS.gene62573:CDS |
CTGATGGAAGAGCTGGAGGG+CGG | 0.708732 | 7.3:+68861612 | MS.gene62573:CDS |
AAGCTGATGGAAGAGCTGGA+GGG | 0.711539 | 7.3:+68861609 | MS.gene62573:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 68860252 | 68869019 | 68860252 | ID=MS.gene62573 |
chr7.3 | mRNA | 68860252 | 68869019 | 68860252 | ID=MS.gene62573.t1;Parent=MS.gene62573 |
chr7.3 | exon | 68860252 | 68860282 | 68860252 | ID=MS.gene62573.t1.exon1;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68860252 | 68860282 | 68860252 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68860444 | 68860483 | 68860444 | ID=MS.gene62573.t1.exon2;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68860444 | 68860483 | 68860444 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68861553 | 68861688 | 68861553 | ID=MS.gene62573.t1.exon3;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68861553 | 68861688 | 68861553 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68862348 | 68862413 | 68862348 | ID=MS.gene62573.t1.exon4;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68862348 | 68862413 | 68862348 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68862669 | 68862719 | 68862669 | ID=MS.gene62573.t1.exon5;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68862669 | 68862719 | 68862669 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68862859 | 68862915 | 68862859 | ID=MS.gene62573.t1.exon6;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68862859 | 68862915 | 68862859 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68863619 | 68863695 | 68863619 | ID=MS.gene62573.t1.exon7;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68863619 | 68863695 | 68863619 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68863811 | 68863847 | 68863811 | ID=MS.gene62573.t1.exon8;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68863811 | 68863847 | 68863811 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68864680 | 68864745 | 68864680 | ID=MS.gene62573.t1.exon9;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68864680 | 68864745 | 68864680 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68864887 | 68864927 | 68864887 | ID=MS.gene62573.t1.exon10;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68864887 | 68864927 | 68864887 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68865925 | 68866057 | 68865925 | ID=MS.gene62573.t1.exon11;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68865925 | 68866057 | 68865925 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68866192 | 68866359 | 68866192 | ID=MS.gene62573.t1.exon12;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68866192 | 68866359 | 68866192 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68867789 | 68867863 | 68867789 | ID=MS.gene62573.t1.exon13;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68867789 | 68867863 | 68867789 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68868129 | 68868252 | 68868129 | ID=MS.gene62573.t1.exon14;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68868129 | 68868252 | 68868129 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68868347 | 68868455 | 68868347 | ID=MS.gene62573.t1.exon15;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68868347 | 68868455 | 68868347 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68868738 | 68868812 | 68868738 | ID=MS.gene62573.t1.exon16;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68868738 | 68868812 | 68868738 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
chr7.3 | exon | 68868878 | 68869019 | 68868878 | ID=MS.gene62573.t1.exon17;Parent=MS.gene62573.t1 |
chr7.3 | CDS | 68868878 | 68869019 | 68868878 | ID=cds.MS.gene62573.t1;Parent=MS.gene62573.t1 |
Gene Sequence |
Protein sequence |