Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62644.t1 | XP_003631022.1 | 98.1 | 374 | 6 | 1 | 1 | 373 | 1 | 374 | 2.50E-170 | 608.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62644.t1 | Q9C5G0 | 54.8 | 403 | 116 | 11 | 1 | 373 | 1 | 367 | 7.6e-91 | 335.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62644.t1 | G7LCD1 | 98.1 | 374 | 6 | 1 | 1 | 373 | 1 | 374 | 1.8e-170 | 608.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62644.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92360 | MS.gene62644 | PPI |
| MS.gene024963 | MS.gene62644 | PPI |
| MS.gene62644 | MS.gene40528 | PPI |
| MS.gene62644 | MS.gene046944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62644.t1 | MTR_8g106220 | 98.663 | 374 | 4 | 1 | 1 | 373 | 1 | 374 | 0.0 | 746 |
| MS.gene62644.t1 | MTR_8g106220 | 93.817 | 372 | 22 | 1 | 1 | 371 | 1 | 372 | 0.0 | 706 |
| MS.gene62644.t1 | MTR_8g106220 | 93.817 | 372 | 22 | 1 | 1 | 371 | 1 | 372 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62644.t1 | AT1G30970 | 64.599 | 387 | 103 | 13 | 1 | 373 | 1 | 367 | 4.18e-156 | 444 |
| MS.gene62644.t1 | AT1G30970 | 63.488 | 367 | 100 | 13 | 1 | 353 | 1 | 347 | 3.18e-141 | 407 |
| MS.gene62644.t1 | AT1G30970 | 59.317 | 322 | 97 | 13 | 66 | 373 | 14 | 315 | 1.01e-102 | 306 |
Find 135 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGGACCACCGGTATT+TGG | 0.170439 | 4.2:-894460 | None:intergenic |
| CAGCCTTTGTTTCCTGTTGT+TGG | 0.240602 | 4.2:+894099 | MS.gene62644:CDS |
| GGAAACAAAGGCTGTGAAAC+TGG | 0.284002 | 4.2:-894090 | None:intergenic |
| GGAGCTTTGTTTGAGATTAC+TGG | 0.297232 | 4.2:-894493 | None:intergenic |
| GTTCCTATTGACGCACATTT+AGG | 0.300973 | 4.2:+894213 | MS.gene62644:CDS |
| ACAGCATACATTGGTCGAAT+TGG | 0.303869 | 4.2:-893693 | None:intergenic |
| ATTTCTGTACTCTCTCTTCC+AGG | 0.309747 | 4.2:-891931 | None:intergenic |
| TCCACCTTGGCTGTCTTTGA+TGG | 0.324836 | 4.2:-893591 | None:intergenic |
| AACTCACATTCTTATGCTTC+TGG | 0.326574 | 4.2:+894436 | MS.gene62644:CDS |
| TCTCTTCCAGGTTTCGCATT+TGG | 0.327140 | 4.2:-891919 | None:intergenic |
| TTGAAGGACCACCGGTATTT+GGG | 0.341503 | 4.2:-894459 | None:intergenic |
| ACCAGGCCCTCCTAATGCTT+GGG | 0.344462 | 4.2:+893879 | MS.gene62644:CDS |
| CTTATCTATGGCTGCATCAA+TGG | 0.344752 | 4.2:-895639 | None:intergenic |
| CTCAAGTATCCTCTTATCTA+TGG | 0.345061 | 4.2:-895651 | None:intergenic |
| ACAAGTAGTTATCAAGCAAT+AGG | 0.347700 | 4.2:+894252 | MS.gene62644:CDS |
| CATGTCCATTCACGTTCTTC+AGG | 0.348004 | 4.2:+891203 | MS.gene62644:CDS |
| GACATGGGTGCAGCGGAAAA+TGG | 0.372457 | 4.2:-894150 | None:intergenic |
| TGGAATGGTGCCACCTCCTA+TGG | 0.375927 | 4.2:+893638 | MS.gene62644:CDS |
| ACATTCTGAACAGGAAATAA+TGG | 0.376562 | 4.2:-893985 | None:intergenic |
| AACTGTTTCAATTCCTCCTC+CGG | 0.388888 | 4.2:+893945 | MS.gene62644:CDS |
| AATGTCTTTAACAAAATATC+AGG | 0.390175 | 4.2:+894681 | MS.gene62644:CDS |
| TACCAGGCCCTCCTAATGCT+TGG | 0.392438 | 4.2:+893878 | MS.gene62644:CDS |
| CAGCATACATTGGTCGAATT+GGG | 0.393166 | 4.2:-893692 | None:intergenic |
| AGTACAGAAATTGAAATATA+CGG | 0.394552 | 4.2:+891943 | MS.gene62644:CDS |
| ATCCCATCAACCCCATTTGC+AGG | 0.396537 | 4.2:+893615 | MS.gene62644:CDS |
| CTAACGAAGTCTACCTGGTT+TGG | 0.400133 | 4.2:+894533 | MS.gene62644:CDS |
| GGCACCATTCCACCTGCAAA+TGG | 0.405114 | 4.2:-893627 | None:intergenic |
| CCACCTGCAAATGGGGTTGA+TGG | 0.408036 | 4.2:-893618 | None:intergenic |
| GAATTGAAACAGTTGGAGGC+TGG | 0.414100 | 4.2:-893936 | None:intergenic |
| CATAAGAAGCTTTCCACTGC+TGG | 0.419731 | 4.2:+891177 | MS.gene62644:CDS |
| GGAACAACTCCCCAAGCATT+AGG | 0.420757 | 4.2:-893889 | None:intergenic |
| TATCAAGCAATAGGGATTCC+AGG | 0.422402 | 4.2:+894261 | MS.gene62644:CDS |
| GGGGATTCCGCCAGATGTCT+TGG | 0.430401 | 4.2:+891972 | MS.gene62644:CDS |
| GGTGTAGATGAAGGCAGTCC+AGG | 0.433874 | 4.2:-894063 | None:intergenic |
| TAACGAAGTCTACCTGGTTT+GGG | 0.436179 | 4.2:+894534 | MS.gene62644:CDS |
| ATGTGGTTATTTCCAACAAC+AGG | 0.437841 | 4.2:-894111 | None:intergenic |
| AATACCGGTGGTCCTTCAAT+TGG | 0.438291 | 4.2:+894463 | MS.gene62644:CDS |
| ATGCCTAAATGTGCGTCAAT+AGG | 0.440753 | 4.2:-894216 | None:intergenic |
| TAATGAGCAGCCAAGACATC+TGG | 0.442885 | 4.2:-891982 | None:intergenic |
| GGTTGATCGTGGAGGATATC+CGG | 0.443716 | 4.2:-893664 | None:intergenic |
| GATGTCTTGGCTGCTCATTA+TGG | 0.444172 | 4.2:+891985 | MS.gene62644:CDS |
| ATTTGACGACGAGAAGATCT+TGG | 0.447592 | 4.2:+891113 | MS.gene62644:CDS |
| GCACCATTCCACCTGCAAAT+GGG | 0.451889 | 4.2:-893626 | None:intergenic |
| GGAGGCCTCACATTCTGAAC+AGG | 0.464202 | 4.2:-893994 | None:intergenic |
| AATTGAAATATACGGAATGC+AGG | 0.468518 | 4.2:+891951 | MS.gene62644:CDS |
| AATTGAAACAGTTGGAGGCT+GGG | 0.475617 | 4.2:-893935 | None:intergenic |
| TATGCTTCTGGCCCAAATAC+CGG | 0.477985 | 4.2:+894448 | MS.gene62644:CDS |
| AGTGTACCATCAATAGCTCC+TGG | 0.479304 | 4.2:+894177 | MS.gene62644:CDS |
| GAAGAAGCGCGTTGCTTCAA+AGG | 0.480211 | 4.2:+891065 | MS.gene62644:CDS |
| TTGATGCAGCCATAGATAAG+AGG | 0.483071 | 4.2:+895642 | MS.gene62644:CDS |
| AACATGACACTTAAAGTGCT+TGG | 0.485491 | 4.2:-891151 | None:intergenic |
| CCCCAAGCATTAGGAGGGCC+TGG | 0.491220 | 4.2:-893880 | None:intergenic |
| GGAAACCATGGCTGAGGTCG+AGG | 0.492794 | 4.2:-893913 | None:intergenic |
| TTGTTTGAGATTACTGGTGG+AGG | 0.495717 | 4.2:-894487 | None:intergenic |
| CAAGTAGTTATCAAGCAATA+GGG | 0.496128 | 4.2:+894253 | MS.gene62644:CDS |
| AGATATAATCCTGCTGTACC+AGG | 0.505163 | 4.2:+893862 | MS.gene62644:intron |
| TTAGGAGGGCCTGGTACAGC+AGG | 0.509971 | 4.2:-893871 | None:intergenic |
| AGGGTGCCAAATGCGAAACC+TGG | 0.511393 | 4.2:+891913 | MS.gene62644:intron |
| GGCTGGGGAAACCATGGCTG+AGG | 0.511844 | 4.2:-893919 | None:intergenic |
| CAATCTCAGATTACTCCTCC+TGG | 0.513612 | 4.2:+894045 | MS.gene62644:CDS |
| GAAAGCCCAGGAGCTATTGA+TGG | 0.514115 | 4.2:-894183 | None:intergenic |
| GTAATCTGAGATTGTAGTGC+AGG | 0.514880 | 4.2:-894036 | None:intergenic |
| CACCATTCCACCTGCAAATG+GGG | 0.522457 | 4.2:-893625 | None:intergenic |
| ACTGGTGGAGGTCCAATTGA+AGG | 0.524549 | 4.2:-894475 | None:intergenic |
| AACCAGGTAGACTTCGTTAG+TGG | 0.526452 | 4.2:-894530 | None:intergenic |
| TTCCACCTCGACCTCAGCCA+TGG | 0.530637 | 4.2:+893908 | MS.gene62644:CDS |
| AACCCCATTTGCAGGTGGAA+TGG | 0.531347 | 4.2:+893623 | MS.gene62644:CDS |
| ATACTTGAGAGCAGGCTAGC+TGG | 0.531564 | 4.2:+895665 | MS.gene62644:CDS |
| GGTTGCTGTGGGTATTGAAC+CGG | 0.533307 | 4.2:-893964 | None:intergenic |
| CCAGGCCCTCCTAATGCTTG+GGG | 0.544705 | 4.2:+893880 | MS.gene62644:CDS |
| ATAAGAGGATACTTGAGAGC+AGG | 0.545989 | 4.2:+895657 | MS.gene62644:CDS |
| AATGGACATGCCACCAGCAG+TGG | 0.546032 | 4.2:-891190 | None:intergenic |
| TTAGTGGCAGGCTGAGTAGC+GGG | 0.546294 | 4.2:-894514 | None:intergenic |
| TGCCACTAACGAAGTCTACC+TGG | 0.547063 | 4.2:+894528 | MS.gene62644:CDS |
| GCTGCTCATTATGGAGATGA+AGG | 0.547626 | 4.2:+891994 | MS.gene62644:CDS |
| ATTGAAACAGTTGGAGGCTG+GGG | 0.549843 | 4.2:-893934 | None:intergenic |
| GCTTTGTTTGAGATTACTGG+TGG | 0.553404 | 4.2:-894490 | None:intergenic |
| CATTGGTCGAATTGGGCCCA+CGG | 0.553954 | 4.2:-893685 | None:intergenic |
| TGTGGGTATTGAACCGGAGG+AGG | 0.557963 | 4.2:-893958 | None:intergenic |
| AGGTAGACTTCGTTAGTGGC+AGG | 0.558673 | 4.2:-894526 | None:intergenic |
| CACCTGCAAATGGGGTTGAT+GGG | 0.560328 | 4.2:-893617 | None:intergenic |
| ATTGAAATATACGGAATGCA+GGG | 0.566703 | 4.2:+891952 | MS.gene62644:CDS |
| GGTTGATGGGATGTCCACCT+TGG | 0.568451 | 4.2:-893604 | None:intergenic |
| GGTTCATGATGAAAGTAGCC+AGG | 0.569158 | 4.2:+894702 | MS.gene62644:CDS |
| GGAATGGTGCCACCTCCTAT+GGG | 0.569199 | 4.2:+893639 | MS.gene62644:CDS |
| GGAGGAGGAATTGAAACAGT+TGG | 0.574521 | 4.2:-893943 | None:intergenic |
| GGATGACGAGGCAATGTCCA+TGG | 0.575495 | 4.2:+894555 | MS.gene62644:CDS |
| GTGCCACCTCCTATGGGTAC+CGG | 0.575683 | 4.2:+893645 | MS.gene62644:CDS |
| GAAACAAAGGCTGTGAAACT+GGG | 0.576837 | 4.2:-894089 | None:intergenic |
| GTGGACCTGAAGAACGTGAA+TGG | 0.577922 | 4.2:-891208 | None:intergenic |
| TATTTCCTGTTCAGAATGTG+AGG | 0.578258 | 4.2:+893989 | MS.gene62644:CDS |
| ATTGGGCCCACGGTTGATCG+TGG | 0.579337 | 4.2:-893675 | None:intergenic |
| GGAACATTTGAAGAAAGCCC+AGG | 0.581787 | 4.2:-894195 | None:intergenic |
| ACTGGGACAGGTGTAGATGA+AGG | 0.584495 | 4.2:-894072 | None:intergenic |
| ACAACTCCCCAAGCATTAGG+AGG | 0.584661 | 4.2:-893886 | None:intergenic |
| TTATCTGAATTTCGATGGGG+AGG | 0.585856 | 4.2:+891040 | None:intergenic |
| GGAGGATATCCGGTACCCAT+AGG | 0.590455 | 4.2:-893654 | None:intergenic |
| TGCTGTGGGTATTGAACCGG+AGG | 0.591412 | 4.2:-893961 | None:intergenic |
| GAGCAGGCTAGCTGGTCGCA+TGG | 0.599459 | 4.2:+895673 | MS.gene62644:CDS |
| TTGCCTCGTCATCCCAAACC+AGG | 0.602208 | 4.2:-894546 | None:intergenic |
| AAGAAGCTTTCCACTGCTGG+TGG | 0.604453 | 4.2:+891180 | MS.gene62644:CDS |
| GAAGTAGTTGATGGCAATGG+AGG | 0.606455 | 4.2:-894012 | None:intergenic |
| AGCGCGTTGCTTCAAAGGTG+TGG | 0.608922 | 4.2:+891070 | MS.gene62644:CDS |
| AGTGCAGGTGAAGTAGTTGA+TGG | 0.611818 | 4.2:-894021 | None:intergenic |
| TTTCCAACAACAGGAAACAA+AGG | 0.612122 | 4.2:-894102 | None:intergenic |
| AAAGGCTGTGAAACTGGGAC+AGG | 0.616328 | 4.2:-894084 | None:intergenic |
| GGATATCCGGTACCCATAGG+AGG | 0.617032 | 4.2:-893651 | None:intergenic |
| GTGTACCATCAATAGCTCCT+GGG | 0.617725 | 4.2:+894178 | MS.gene62644:CDS |
| GTTGGAGGCTGGGGAAACCA+TGG | 0.620715 | 4.2:-893925 | None:intergenic |
| ACTTGAAGACATGGGTGCAG+CGG | 0.621248 | 4.2:-894157 | None:intergenic |
| AGGTCCAATTGAAGGACCAC+CGG | 0.621456 | 4.2:-894467 | None:intergenic |
| AACCATGGCTGAGGTCGAGG+TGG | 0.623423 | 4.2:-893910 | None:intergenic |
| GGAGGAATTGAAACAGTTGG+AGG | 0.628063 | 4.2:-893940 | None:intergenic |
| GTTAGTGGCAGGCTGAGTAG+CGG | 0.628691 | 4.2:-894515 | None:intergenic |
| GGAAAATGGTGAACTTTGAG+TGG | 0.629363 | 4.2:-894136 | None:intergenic |
| GGTGAAGTAGTTGATGGCAA+TGG | 0.630819 | 4.2:-894015 | None:intergenic |
| TTGAAATATACGGAATGCAG+GGG | 0.631086 | 4.2:+891953 | MS.gene62644:CDS |
| TGATGGTACACTTGAAGACA+TGG | 0.634182 | 4.2:-894166 | None:intergenic |
| CTACCTGGTTTGGGATGACG+AGG | 0.635306 | 4.2:+894543 | MS.gene62644:CDS |
| ACAGGAAATAATGGTTGCTG+TGG | 0.636390 | 4.2:-893976 | None:intergenic |
| CCATCAACCCCATTTGCAGG+TGG | 0.645938 | 4.2:+893618 | MS.gene62644:CDS |
| TGAGCAGCCAAGACATCTGG+CGG | 0.647342 | 4.2:-891979 | None:intergenic |
| ATATCCTCCACGATCAACCG+TGG | 0.655774 | 4.2:+893668 | MS.gene62644:CDS |
| TCCATCAAAGACAGCCAAGG+TGG | 0.658500 | 4.2:+893590 | MS.gene62644:CDS |
| TATCCGGTACCCATAGGAGG+TGG | 0.658522 | 4.2:-893648 | None:intergenic |
| CAACTCCCCAAGCATTAGGA+GGG | 0.662716 | 4.2:-893885 | None:intergenic |
| TATCCTCCACGATCAACCGT+GGG | 0.663319 | 4.2:+893669 | MS.gene62644:CDS |
| GTAGATGAAGGCAGTCCAGG+AGG | 0.667864 | 4.2:-894060 | None:intergenic |
| GCTTCTGGCCCAAATACCGG+TGG | 0.670008 | 4.2:+894451 | MS.gene62644:CDS |
| GGGCCCACGGTTGATCGTGG+AGG | 0.671495 | 4.2:-893672 | None:intergenic |
| TGTTCCATCAAAGACAGCCA+AGG | 0.680961 | 4.2:+893587 | MS.gene62644:CDS |
| CAGGAAATAATGGTTGCTGT+GGG | 0.694551 | 4.2:-893975 | None:intergenic |
| TGTTGTTGGAAATAACCACA+TGG | 0.708917 | 4.2:+894113 | MS.gene62644:CDS |
| GTGAACTTTGAGTGGCCATG+TGG | 0.742581 | 4.2:-894128 | None:intergenic |
| GATGGTACACTTGAAGACAT+GGG | 0.786065 | 4.2:-894165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGTAAAAAAAAAATAAAAAA+AGG | - | chr4.2:893517-893536 | None:intergenic | 10.0% |
| !! | TTATAATTATAATTACCAAA+AGG | - | chr4.2:895237-895256 | None:intergenic | 10.0% |
| !!! | CAATCATTTTAAAAAATAAA+CGG | + | chr4.2:894853-894872 | MS.gene62644:intron | 10.0% |
| !!! | GTTTATTTTTTTAAAATGAT+TGG | - | chr4.2:895076-895095 | None:intergenic | 10.0% |
| !!! | TTTTGTACAATTTATTATTT+AGG | + | chr4.2:893431-893450 | MS.gene62644:intron | 10.0% |
| !!! | CAATTTATTATTTAGGATAA+AGG | + | chr4.2:893438-893457 | MS.gene62644:intron | 15.0% |
| !!! | CATCATTACAATTTATTTTA+TGG | + | chr4.2:895461-895480 | MS.gene62644:intron | 15.0% |
| !!! | TCTAGTACATTAATATTTTA+AGG | - | chr4.2:891857-891876 | None:intergenic | 15.0% |
| !!! | TTGAAAAAAAATCTTTTCAT+TGG | + | chr4.2:894590-894609 | MS.gene62644:intron | 15.0% |
| !! | AAGGGTAAAAAAAATAACAT+TGG | - | chr4.2:895371-895390 | None:intergenic | 20.0% |
| !! | AATGTCTTTAACAAAATATC+AGG | + | chr4.2:894681-894700 | MS.gene62644:CDS | 20.0% |
| !! | AGTACAGAAATTGAAATATA+CGG | + | chr4.2:891943-891962 | MS.gene62644:CDS | 20.0% |
| !! | ATAATCAATTATGTACATCT+CGG | - | chr4.2:891817-891836 | None:intergenic | 20.0% |
| !! | ATTCGAATTCTTATTCTATT+TGG | + | chr4.2:893744-893763 | MS.gene62644:intron | 20.0% |
| !! | CAATTTCTTCATTAACATAA+AGG | - | chr4.2:892807-892826 | None:intergenic | 20.0% |
| !! | GATAACTAATTAACTAACTA+TGG | - | chr4.2:892244-892263 | None:intergenic | 20.0% |
| !! | GTGAATTCAATTTACTATTT+AGG | + | chr4.2:891462-891481 | MS.gene62644:intron | 20.0% |
| !! | GTTTGATATAGTAAAAAACT+TGG | + | chr4.2:894342-894361 | MS.gene62644:intron | 20.0% |
| !! | TGGAAGTTACATTTATTTAA+AGG | + | chr4.2:895145-895164 | MS.gene62644:intron | 20.0% |
| !! | TTAAAATGGAAAATTAACAG+AGG | - | chr4.2:892133-892152 | None:intergenic | 20.0% |
| !! | TTATGTTAATGAAGAAATTG+AGG | + | chr4.2:892807-892826 | MS.gene62644:intron | 20.0% |
| !! | TTGTATACACATATTAAAAG+AGG | + | chr4.2:894922-894941 | MS.gene62644:intron | 20.0% |
| !! | TTGTTTACACATATTAAATG+AGG | + | chr4.2:894811-894830 | MS.gene62644:intron | 20.0% |
| !!! | AAACACTTTAAAAGAATAGA+TGG | + | chr4.2:894964-894983 | MS.gene62644:intron | 20.0% |
| !!! | ATCTATTCTTTTAAAGTGTT+TGG | - | chr4.2:894965-894984 | None:intergenic | 20.0% |
| !!! | ATGTATATGTGATTTTTGTT+GGG | + | chr4.2:895335-895354 | MS.gene62644:intron | 20.0% |
| !!! | ATTATATCGTTTTTCTTTTC+AGG | + | chr4.2:891893-891912 | MS.gene62644:intron | 20.0% |
| !!! | TATGTATATGTGATTTTTGT+TGG | + | chr4.2:895334-895353 | MS.gene62644:intron | 20.0% |
| !!! | TATGTATTATTCTGTTTTGT+TGG | + | chr4.2:893387-893406 | MS.gene62644:intron | 20.0% |
| !!! | TTATATCGTTTTTCTTTTCA+GGG | + | chr4.2:891894-891913 | MS.gene62644:intron | 20.0% |
| !!! | TTTACTATTTAGGTTCAATT+TGG | + | chr4.2:891472-891491 | MS.gene62644:intron | 20.0% |
| ! | AAAAACGAATGAAAGAGAAA+AGG | - | chr4.2:891259-891278 | None:intergenic | 25.0% |
| ! | AAAACGAATGAAAGAGAAAA+GGG | - | chr4.2:891258-891277 | None:intergenic | 25.0% |
| ! | AAATGTTTAACAGCATACAT+TGG | - | chr4.2:893705-893724 | None:intergenic | 25.0% |
| ! | AATAAATGTAACTTCCATTC+AGG | - | chr4.2:895142-895161 | None:intergenic | 25.0% |
| ! | ACAAATCATAGCATAAAATG+AGG | - | chr4.2:891377-891396 | None:intergenic | 25.0% |
| ! | ATAAAAGGTAGCAGATATAT+AGG | + | chr4.2:892279-892298 | MS.gene62644:intron | 25.0% |
| ! | ATAAGATATAAGCTATAAGC+TGG | + | chr4.2:891590-891609 | MS.gene62644:intron | 25.0% |
| ! | CAAATCATAGCATAAAATGA+GGG | - | chr4.2:891376-891395 | None:intergenic | 25.0% |
| ! | CTACAATGGAATCATTAAAA+TGG | - | chr4.2:892147-892166 | None:intergenic | 25.0% |
| ! | CTTATAAGTAAGCACTTATA+AGG | - | chr4.2:891525-891544 | None:intergenic | 25.0% |
| ! | TAATCAATTATGTACATCTC+GGG | - | chr4.2:891816-891835 | None:intergenic | 25.0% |
| ! | TAGTTAATTAGTTATCTGCA+GGG | + | chr4.2:892248-892267 | MS.gene62644:intron | 25.0% |
| ! | TCAATAAGAACTATGAAACA+AGG | - | chr4.2:892051-892070 | None:intergenic | 25.0% |
| ! | TGAAATTGATCATTAATCTG+AGG | + | chr4.2:893269-893288 | MS.gene62644:intron | 25.0% |
| ! | TGTACTTGTAGTAGTTATTA+AGG | - | chr4.2:892092-892111 | None:intergenic | 25.0% |
| ! | TTAGTTAATTAGTTATCTGC+AGG | + | chr4.2:892247-892266 | MS.gene62644:intron | 25.0% |
| !! | ACCACAACAAACAAATATTT+TGG | - | chr4.2:895559-895578 | None:intergenic | 25.0% |
| !! | ATATTTTCATTCGGTTTTTC+TGG | + | chr4.2:893198-893217 | MS.gene62644:intron | 25.0% |
| !! | CATACTACCTTTTTATTACT+TGG | + | chr4.2:894730-894749 | MS.gene62644:intron | 25.0% |
| !! | TCCAAAATATTTGTTTGTTG+TGG | + | chr4.2:895555-895574 | MS.gene62644:intron | 25.0% |
| !! | TTCTTATTCTATTTGGAATG+TGG | + | chr4.2:893751-893770 | MS.gene62644:intron | 25.0% |
| !!! | TCTCTTTCATTCGTTTTTTA+GGG | + | chr4.2:891261-891280 | MS.gene62644:intron | 25.0% |
| !!! | TTCTCTTTCATTCGTTTTTT+AGG | + | chr4.2:891260-891279 | MS.gene62644:intron | 25.0% |
| AAATTGAGGAAGAAATTGAC+TGG | + | chr4.2:892821-892840 | MS.gene62644:intron | 30.0% | |
| AACCTATCCGTGAAAATAAA+TGG | - | chr4.2:892393-892412 | None:intergenic | 30.0% | |
| AAGAGAAAAGGGAATATACT+TGG | - | chr4.2:891247-891266 | None:intergenic | 30.0% | |
| AATTGAAATATACGGAATGC+AGG | + | chr4.2:891951-891970 | MS.gene62644:CDS | 30.0% | |
| ACAAGTAGTTATCAAGCAAT+AGG | + | chr4.2:894252-894271 | MS.gene62644:CDS | 30.0% | |
| ACATCTGTTACAGTTATACA+GGG | - | chr4.2:892203-892222 | None:intergenic | 30.0% | |
| ACATTCTGAACAGGAAATAA+TGG | - | chr4.2:893988-894007 | None:intergenic | 30.0% | |
| AGCAACTCCAAGTAATAAAA+AGG | - | chr4.2:894740-894759 | None:intergenic | 30.0% | |
| ATTGAAATATACGGAATGCA+GGG | + | chr4.2:891952-891971 | MS.gene62644:CDS | 30.0% | |
| CAAGTAGTTATCAAGCAATA+GGG | + | chr4.2:894253-894272 | MS.gene62644:CDS | 30.0% | |
| CCTTAGTTTACAACTTACAT+GGG | + | chr4.2:892539-892558 | MS.gene62644:intron | 30.0% | |
| GCAATGAAAAAAAACACACT+TGG | - | chr4.2:891422-891441 | None:intergenic | 30.0% | |
| TACATCTGTTACAGTTATAC+AGG | - | chr4.2:892204-892223 | None:intergenic | 30.0% | |
| TAGCAGATATATAGGAGTTA+GGG | + | chr4.2:892287-892306 | MS.gene62644:intron | 30.0% | |
| TATCCGTGAAAATAAATGGT+CGG | - | chr4.2:892389-892408 | None:intergenic | 30.0% | |
| TGTACGAATGAAGAAGAAAA+AGG | - | chr4.2:891299-891318 | None:intergenic | 30.0% | |
| TTGTTGGTATTATTGACGTT+AGG | + | chr4.2:893403-893422 | MS.gene62644:intron | 30.0% | |
| ! | AAAGAAAATAAAGCGTTACC+TGG | - | chr4.2:894282-894301 | None:intergenic | 30.0% |
| ! | ACTAGTCTACTATTGTTTCA+TGG | + | chr4.2:894616-894635 | MS.gene62644:intron | 30.0% |
| ! | GCTATTCTACTAATTCCTTT+TGG | + | chr4.2:895219-895238 | MS.gene62644:intron | 30.0% |
| ! | TCTAATATCTCCATTTTCCA+AGG | + | chr4.2:892888-892907 | MS.gene62644:intron | 30.0% |
| ! | TTTTATCGTGTACAAATGCT+GGG | - | chr4.2:895311-895330 | None:intergenic | 30.0% |
| !! | ATTTATTTTCACGGATAGGT+TGG | + | chr4.2:892392-892411 | MS.gene62644:intron | 30.0% |
| !! | TTGTTTGTTGTGGTAATTTG+TGG | + | chr4.2:895565-895584 | MS.gene62644:intron | 30.0% |
| !! | TTTATTTTCACGGATAGGTT+GGG | + | chr4.2:892393-892412 | MS.gene62644:intron | 30.0% |
| !!! | CAAACAAATATTTTGGAGCA+TGG | - | chr4.2:895552-895571 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTTCAACCCTAAT+AGG | + | chr4.2:893237-893256 | MS.gene62644:intron | 30.0% |
| AAAAGGTAGTATGACTTACC+TGG | - | chr4.2:894723-894742 | None:intergenic | 35.0% | |
| AAACTTTCGAATCAAGCGAA+GGG | - | chr4.2:895389-895408 | None:intergenic | 35.0% | |
| AAATGTAACTTCCATTCAGG+TGG | - | chr4.2:895139-895158 | None:intergenic | 35.0% | |
| AACTCACATTCTTATGCTTC+TGG | + | chr4.2:894436-894455 | MS.gene62644:CDS | 35.0% | |
| AAGCACTTGTAAAACTGCTT+AGG | - | chr4.2:891698-891717 | None:intergenic | 35.0% | |
| AAGCTATACTTGAGAGTTGA+TGG | + | chr4.2:891619-891638 | MS.gene62644:intron | 35.0% | |
| AATGAAAATATGAGCAGACC+AGG | - | chr4.2:893189-893208 | None:intergenic | 35.0% | |
| AATGTAACTTCCATTCAGGT+GGG | - | chr4.2:895138-895157 | None:intergenic | 35.0% | |
| AGACCCTTATAGTAACAAAG+AGG | + | chr4.2:891754-891773 | MS.gene62644:intron | 35.0% | |
| AGCAGATATATAGGAGTTAG+GGG | + | chr4.2:892288-892307 | MS.gene62644:intron | 35.0% | |
| AGTTGCAGTTATTATGAGAC+CGG | + | chr4.2:892980-892999 | MS.gene62644:intron | 35.0% | |
| ATTGTAGTGTCAGAAATAGG+AGG | + | chr4.2:892160-892179 | MS.gene62644:intron | 35.0% | |
| CATCTGTTACAGTTATACAG+GGG | - | chr4.2:892202-892221 | None:intergenic | 35.0% | |
| CCCATGTAAGTTGTAAACTA+AGG | - | chr4.2:892542-892561 | None:intergenic | 35.0% | |
| CTCAAGTATCCTCTTATCTA+TGG | - | chr4.2:895654-895673 | None:intergenic | 35.0% | |
| CTCCCTCTTTGTTACTATAA+GGG | - | chr4.2:891760-891779 | None:intergenic | 35.0% | |
| GAAAATAAATGGTCGGAGAT+GGG | - | chr4.2:892382-892401 | None:intergenic | 35.0% | |
| GACCCTTATAGTAACAAAGA+GGG | + | chr4.2:891755-891774 | MS.gene62644:intron | 35.0% | |
| GCCTTAGTTTACAACTTACA+TGG | + | chr4.2:892538-892557 | MS.gene62644:intron | 35.0% | |
| GTAGCAGATATATAGGAGTT+AGG | + | chr4.2:892286-892305 | MS.gene62644:intron | 35.0% | |
| GTCTCATAATAACTGCAACT+TGG | - | chr4.2:892980-892999 | None:intergenic | 35.0% | |
| TAATTAGTTATCTGCAGGGT+GGG | + | chr4.2:892252-892271 | MS.gene62644:intron | 35.0% | |
| TATTTCCTGTTCAGAATGTG+AGG | + | chr4.2:893989-894008 | MS.gene62644:CDS | 35.0% | |
| TCAAGCTATGCTTCCAATTT+GGG | + | chr4.2:895175-895194 | MS.gene62644:intron | 35.0% | |
| TCCATTGTAGTGTCAGAAAT+AGG | + | chr4.2:892157-892176 | MS.gene62644:intron | 35.0% | |
| TGAAAATAAATGGTCGGAGA+TGG | - | chr4.2:892383-892402 | None:intergenic | 35.0% | |
| TGTTGTTGGAAATAACCACA+TGG | + | chr4.2:894113-894132 | MS.gene62644:CDS | 35.0% | |
| TTAATTAGTTATCTGCAGGG+TGG | + | chr4.2:892251-892270 | MS.gene62644:intron | 35.0% | |
| TTCAAGAATATGACTGACCA+TGG | - | chr4.2:894575-894594 | None:intergenic | 35.0% | |
| TTCAATGCCTAGTCCTATTA+GGG | - | chr4.2:893253-893272 | None:intergenic | 35.0% | |
| TTGAAATATACGGAATGCAG+GGG | + | chr4.2:891953-891972 | MS.gene62644:CDS | 35.0% | |
| TTGTAAACTAAGGCAGAACT+TGG | - | chr4.2:892532-892551 | None:intergenic | 35.0% | |
| TTGTAGTGTCAGAAATAGGA+GGG | + | chr4.2:892161-892180 | MS.gene62644:intron | 35.0% | |
| TTTCAATGCCTAGTCCTATT+AGG | - | chr4.2:893254-893273 | None:intergenic | 35.0% | |
| TTTCCAACAACAGGAAACAA+AGG | - | chr4.2:894105-894124 | None:intergenic | 35.0% | |
| ! | AACATGACACTTAAAGTGCT+TGG | - | chr4.2:891154-891173 | None:intergenic | 35.0% |
| ! | ACGGCAAACAAAAAAAGTGT+AGG | + | chr4.2:894872-894891 | MS.gene62644:intron | 35.0% |
| ! | AGGTCATCTGTTCAGTTTTT+CGG | - | chr4.2:893169-893188 | None:intergenic | 35.0% |
| ! | ATGTGGTTATTTCCAACAAC+AGG | - | chr4.2:894114-894133 | None:intergenic | 35.0% |
| ! | CTTTTATCGTGTACAAATGC+TGG | - | chr4.2:895312-895331 | None:intergenic | 35.0% |
| ! | GGTCTGCTCATATTTTCATT+CGG | + | chr4.2:893189-893208 | MS.gene62644:intron | 35.0% |
| ! | TCAAGGATCTGAAATATGCA+TGG | + | chr4.2:892751-892770 | MS.gene62644:intron | 35.0% |
| ! | TTCGCTTGATTCGAAAGTTT+GGG | + | chr4.2:895389-895408 | MS.gene62644:intron | 35.0% |
| ! | TTTTCATTTTCTTGTCCCTC+TGG | + | chr4.2:894389-894408 | MS.gene62644:intron | 35.0% |
| !! | ATTCGAAAGTTTGGGGTTTT+GGG | + | chr4.2:895397-895416 | MS.gene62644:intron | 35.0% |
| !! | GACCATTTATTTTCACGGAT+AGG | + | chr4.2:892388-892407 | MS.gene62644:intron | 35.0% |
| !! | TCAGTTTTTCGGTTGTGTAA+GGG | - | chr4.2:893158-893177 | None:intergenic | 35.0% |
| !! | TCCTATTTCTGACACTACAA+TGG | - | chr4.2:892161-892180 | None:intergenic | 35.0% |
| !! | TCTCCGACCATTTATTTTCA+CGG | + | chr4.2:892383-892402 | MS.gene62644:intron | 35.0% |
| !! | TTCAGTTTTTCGGTTGTGTA+AGG | - | chr4.2:893159-893178 | None:intergenic | 35.0% |
| !! | TTTTGATGCTTTGTTGCTGT+AGG | + | chr4.2:894648-894667 | MS.gene62644:intron | 35.0% |
| !!! | TCATTCGGTTTTTCTGGTTT+GGG | + | chr4.2:893204-893223 | MS.gene62644:intron | 35.0% |
| !!! | TTCATTCGGTTTTTCTGGTT+TGG | + | chr4.2:893203-893222 | MS.gene62644:intron | 35.0% |
| AAATGGATAGCAGAGCAAGA+AGG | + | chr4.2:892446-892465 | MS.gene62644:intron | 40.0% | |
| AACTGTTTCAATTCCTCCTC+CGG | + | chr4.2:893945-893964 | MS.gene62644:CDS | 40.0% | |
| AAGCATAAAGCCTACTCATC+TGG | - | chr4.2:894774-894793 | None:intergenic | 40.0% | |
| AAGCTATGCTTCCAATTTGG+GGG | + | chr4.2:895177-895196 | MS.gene62644:intron | 40.0% | |
| AATTGAAACAGTTGGAGGCT+GGG | - | chr4.2:893938-893957 | None:intergenic | 40.0% | |
| ACAGCATACATTGGTCGAAT+TGG | - | chr4.2:893696-893715 | None:intergenic | 40.0% | |
| ACAGGAAATAATGGTTGCTG+TGG | - | chr4.2:893979-893998 | None:intergenic | 40.0% | |
| ACGAATGAGCAAAAGTCTGT+TGG | - | chr4.2:895439-895458 | None:intergenic | 40.0% | |
| ACTTCAACTATCCTTGACCT+TGG | - | chr4.2:892908-892927 | None:intergenic | 40.0% | |
| AGAGTTTGGATCTCTTGCAT+AGG | + | chr4.2:895525-895544 | MS.gene62644:intron | 40.0% | |
| AGATATAATCCTGCTGTACC+AGG | + | chr4.2:893862-893881 | MS.gene62644:intron | 40.0% | |
| ATAAGAGGATACTTGAGAGC+AGG | + | chr4.2:895657-895676 | MS.gene62644:CDS | 40.0% | |
| ATGCCTAAATGTGCGTCAAT+AGG | - | chr4.2:894219-894238 | None:intergenic | 40.0% | |
| ATTTCTGTACTCTCTCTTCC+AGG | - | chr4.2:891934-891953 | None:intergenic | 40.0% | |
| ATTTGACGACGAGAAGATCT+TGG | + | chr4.2:891113-891132 | MS.gene62644:CDS | 40.0% | |
| CAAACTTTCGAATCAAGCGA+AGG | - | chr4.2:895390-895409 | None:intergenic | 40.0% | |
| CAAGCTATGCTTCCAATTTG+GGG | + | chr4.2:895176-895195 | MS.gene62644:intron | 40.0% | |
| CACCATACATGTCAGGTATT+CGG | - | chr4.2:893357-893376 | None:intergenic | 40.0% | |
| CAGCATACATTGGTCGAATT+GGG | - | chr4.2:893695-893714 | None:intergenic | 40.0% | |
| CAGGAAATAATGGTTGCTGT+GGG | - | chr4.2:893978-893997 | None:intergenic | 40.0% | |
| CAGTATGTATACAGCGAACA+TGG | + | chr4.2:893077-893096 | MS.gene62644:intron | 40.0% | |
| CCTCCCTCTTTGTTACTATA+AGG | - | chr4.2:891761-891780 | None:intergenic | 40.0% | |
| CCTTATAGTAACAAAGAGGG+AGG | + | chr4.2:891758-891777 | MS.gene62644:intron | 40.0% | |
| CGAATGAGCAAAAGTCTGTT+GGG | - | chr4.2:895438-895457 | None:intergenic | 40.0% | |
| CTATCCTTGACCTTGGAAAA+TGG | - | chr4.2:892901-892920 | None:intergenic | 40.0% | |
| CTTATCTATGGCTGCATCAA+TGG | - | chr4.2:895642-895661 | None:intergenic | 40.0% | |
| GAAAAACTGAACAGATGACC+TGG | + | chr4.2:893168-893187 | MS.gene62644:intron | 40.0% | |
| GAAACAAAGGCTGTGAAACT+GGG | - | chr4.2:894092-894111 | None:intergenic | 40.0% | |
| GACACAGTTGCATATATCCA+CGG | + | chr4.2:892506-892525 | MS.gene62644:intron | 40.0% | |
| GATGGTACACTTGAAGACAT+GGG | - | chr4.2:894168-894187 | None:intergenic | 40.0% | |
| GATTTCTTATGCTCCTGATG+TGG | - | chr4.2:892642-892661 | None:intergenic | 40.0% | |
| GCAGATATATAGGAGTTAGG+GGG | + | chr4.2:892289-892308 | MS.gene62644:intron | 40.0% | |
| GGAAAATGGTGAACTTTGAG+TGG | - | chr4.2:894139-894158 | None:intergenic | 40.0% | |
| GGAACAAGTGAATTCAGACT+TGG | + | chr4.2:895482-895501 | MS.gene62644:intron | 40.0% | |
| GTCAAGCTATGCTTCCAATT+TGG | + | chr4.2:895174-895193 | MS.gene62644:intron | 40.0% | |
| GTGGATATATGCAACTGTGT+CGG | - | chr4.2:892507-892526 | None:intergenic | 40.0% | |
| GTTCCTATTGACGCACATTT+AGG | + | chr4.2:894213-894232 | MS.gene62644:CDS | 40.0% | |
| GTTGCAGTTATTATGAGACC+GGG | + | chr4.2:892981-893000 | MS.gene62644:intron | 40.0% | |
| TAACGAAGTCTACCTGGTTT+GGG | + | chr4.2:894534-894553 | MS.gene62644:CDS | 40.0% | |
| TACCGAATACCTGACATGTA+TGG | + | chr4.2:893352-893371 | MS.gene62644:intron | 40.0% | |
| TATCAAGCAATAGGGATTCC+AGG | + | chr4.2:894261-894280 | MS.gene62644:CDS | 40.0% | |
| TCACATCTAACCAGATGAGT+AGG | + | chr4.2:894761-894780 | MS.gene62644:intron | 40.0% | |
| TCTTTAGATAGCCCCCAAAT+TGG | - | chr4.2:895191-895210 | None:intergenic | 40.0% | |
| TGATGGTACACTTGAAGACA+TGG | - | chr4.2:894169-894188 | None:intergenic | 40.0% | |
| TGCAGGGTGGGTATTATAAA+AGG | + | chr4.2:892264-892283 | MS.gene62644:intron | 40.0% | |
| TGTTCAACCCTAATAGGACT+AGG | + | chr4.2:893243-893262 | MS.gene62644:intron | 40.0% | |
| TTGATGCAGCCATAGATAAG+AGG | + | chr4.2:895642-895661 | MS.gene62644:CDS | 40.0% | |
| ! | AGAAGGGGCTACTTAGATTT+TGG | + | chr4.2:892472-892491 | MS.gene62644:intron | 40.0% |
| ! | ATCTCCATTTTCCAAGGTCA+AGG | + | chr4.2:892894-892913 | MS.gene62644:intron | 40.0% |
| ! | CAGGAGCATAAGAAATCTCA+AGG | + | chr4.2:892645-892664 | MS.gene62644:intron | 40.0% |
| ! | CTTCGCTTGATTCGAAAGTT+TGG | + | chr4.2:895388-895407 | MS.gene62644:intron | 40.0% |
| ! | GGTTGTGTAAGGGTTAGTAA+TGG | - | chr4.2:893148-893167 | None:intergenic | 40.0% |
| ! | GTAATCTGAGATTGTAGTGC+AGG | - | chr4.2:894039-894058 | None:intergenic | 40.0% |
| ! | TCGCTTGATTCGAAAGTTTG+GGG | + | chr4.2:895390-895409 | MS.gene62644:intron | 40.0% |
| ! | TGTGTAAGGGTTAGTAATGG+TGG | - | chr4.2:893145-893164 | None:intergenic | 40.0% |
| ! | TTGTCCCTCTGGTTTCTTAT+AGG | + | chr4.2:894400-894419 | MS.gene62644:intron | 40.0% |
| ! | TTGTTTGAGATTACTGGTGG+AGG | - | chr4.2:894490-894509 | None:intergenic | 40.0% |
| !! | GATTCGAAAGTTTGGGGTTT+TGG | + | chr4.2:895396-895415 | MS.gene62644:intron | 40.0% |
| !! | GCTTTGTTTGAGATTACTGG+TGG | - | chr4.2:894493-894512 | None:intergenic | 40.0% |
| !! | GGAGCTTTGTTTGAGATTAC+TGG | - | chr4.2:894496-894515 | None:intergenic | 40.0% |
| !!! | ACTTGGTGACGTTTTCTTTG+TGG | - | chr4.2:891230-891249 | None:intergenic | 40.0% |
| AAACCAGTCACAGTGGTTCA+AGG | - | chr4.2:894305-894324 | None:intergenic | 45.0% | |
| AACCAGGTAGACTTCGTTAG+TGG | - | chr4.2:894533-894552 | None:intergenic | 45.0% | |
| AAGACAGTGATGCGACAAGT+CGG | - | chr4.2:893039-893058 | None:intergenic | 45.0% | |
| AATACCGGTGGTCCTTCAAT+TGG | + | chr4.2:894463-894482 | MS.gene62644:CDS | 45.0% | |
| AATAGCCTTCAACCGTGAGA+AGG | + | chr4.2:892702-892721 | MS.gene62644:intron | 45.0% | |
| AATCGTCTTCAACCGTGAGA+AGG | + | chr4.2:892613-892632 | MS.gene62644:intron | 45.0% | |
| AGAGCAAGAAGGAGAAGAAG+GGG | + | chr4.2:892457-892476 | MS.gene62644:intron | 45.0% | |
| AGTGCAGGTGAAGTAGTTGA+TGG | - | chr4.2:894024-894043 | None:intergenic | 45.0% | |
| AGTGTACCATCAATAGCTCC+TGG | + | chr4.2:894177-894196 | MS.gene62644:CDS | 45.0% | |
| AGTTATTATGAGACCGGGTC+GGG | + | chr4.2:892986-893005 | MS.gene62644:intron | 45.0% | |
| ATTGAAACAGTTGGAGGCTG+GGG | - | chr4.2:893937-893956 | None:intergenic | 45.0% | |
| ATTGAAGGACCACCGGTATT+TGG | - | chr4.2:894463-894482 | None:intergenic | 45.0% | |
| CAATCTCAGATTACTCCTCC+TGG | + | chr4.2:894045-894064 | MS.gene62644:CDS | 45.0% | |
| CAGAGCAAGAAGGAGAAGAA+GGG | + | chr4.2:892456-892475 | MS.gene62644:intron | 45.0% | |
| CAGTTATTATGAGACCGGGT+CGG | + | chr4.2:892985-893004 | MS.gene62644:intron | 45.0% | |
| CATAAGAAGCTTTCCACTGC+TGG | + | chr4.2:891177-891196 | MS.gene62644:CDS | 45.0% | |
| CATGTCCATTCACGTTCTTC+AGG | + | chr4.2:891203-891222 | MS.gene62644:CDS | 45.0% | |
| CCCACCTATAAGAAACCAGA+GGG | - | chr4.2:894407-894426 | None:intergenic | 45.0% | |
| CGAATACCTGACATGTATGG+TGG | + | chr4.2:893355-893374 | MS.gene62644:intron | 45.0% | |
| CTAACGAAGTCTACCTGGTT+TGG | + | chr4.2:894533-894552 | MS.gene62644:CDS | 45.0% | |
| GAATTGAAACAGTTGGAGGC+TGG | - | chr4.2:893939-893958 | None:intergenic | 45.0% | |
| GACAAATGGTTGGATCCAGT+CGG | + | chr4.2:892314-892333 | MS.gene62644:intron | 45.0% | |
| GATATATAGGAGTTAGGGGG+TGG | + | chr4.2:892292-892311 | MS.gene62644:intron | 45.0% | |
| GATGTCTTGGCTGCTCATTA+TGG | + | chr4.2:891985-892004 | MS.gene62644:CDS | 45.0% | |
| GCTGCTCATTATGGAGATGA+AGG | + | chr4.2:891994-892013 | MS.gene62644:CDS | 45.0% | |
| GGAAACAAAGGCTGTGAAAC+TGG | - | chr4.2:894093-894112 | None:intergenic | 45.0% | |
| GGAACATTTGAAGAAAGCCC+AGG | - | chr4.2:894198-894217 | None:intergenic | 45.0% | |
| GGAGGAATTGAAACAGTTGG+AGG | - | chr4.2:893943-893962 | None:intergenic | 45.0% | |
| GGAGGAGGAATTGAAACAGT+TGG | - | chr4.2:893946-893965 | None:intergenic | 45.0% | |
| GGGATGAAGGATCACAAAGT+TGG | - | chr4.2:895291-895310 | None:intergenic | 45.0% | |
| GGTTCATGATGAAAGTAGCC+AGG | + | chr4.2:894702-894721 | MS.gene62644:CDS | 45.0% | |
| GTATACAGCGAACATGGTAG+CGG | + | chr4.2:893083-893102 | MS.gene62644:intron | 45.0% | |
| GTGTACAAATGCTGGGATGA+AGG | - | chr4.2:895304-895323 | None:intergenic | 45.0% | |
| GTGTACCATCAATAGCTCCT+GGG | + | chr4.2:894178-894197 | MS.gene62644:CDS | 45.0% | |
| GTGTCAAAAACCAGTCACAG+TGG | - | chr4.2:894312-894331 | None:intergenic | 45.0% | |
| TAATGAGCAGCCAAGACATC+TGG | - | chr4.2:891985-892004 | None:intergenic | 45.0% | |
| TATGCTTCTGGCCCAAATAC+CGG | + | chr4.2:894448-894467 | MS.gene62644:CDS | 45.0% | |
| TCAGAAATAGGAGGGATGCA+GGG | + | chr4.2:892169-892188 | MS.gene62644:intron | 45.0% | |
| TCAGCTTCTTTCGCAGAGTT+TGG | + | chr4.2:895511-895530 | MS.gene62644:intron | 45.0% | |
| TCCCACCTATAAGAAACCAG+AGG | - | chr4.2:894408-894427 | None:intergenic | 45.0% | |
| TCTCTTCCAGGTTTCGCATT+TGG | - | chr4.2:891922-891941 | None:intergenic | 45.0% | |
| TGTTCCATCAAAGACAGCCA+AGG | + | chr4.2:893587-893606 | MS.gene62644:CDS | 45.0% | |
| TTCTTATGCTCCTGATGTGG+AGG | - | chr4.2:892639-892658 | None:intergenic | 45.0% | |
| TTGAAGGACCACCGGTATTT+GGG | - | chr4.2:894462-894481 | None:intergenic | 45.0% | |
| TTTCCTTGAACCACTGTGAC+TGG | + | chr4.2:894299-894318 | MS.gene62644:intron | 45.0% | |
| ! | CAGCCTTTGTTTCCTGTTGT+TGG | + | chr4.2:894099-894118 | MS.gene62644:CDS | 45.0% |
| ! | CCCTCTGGTTTCTTATAGGT+GGG | + | chr4.2:894404-894423 | MS.gene62644:intron | 45.0% |
| ! | TCCCTCTGGTTTCTTATAGG+TGG | + | chr4.2:894403-894422 | MS.gene62644:intron | 45.0% |
| ! | TGATGCTTTGTTGCTGTAGG+AGG | + | chr4.2:894651-894670 | MS.gene62644:intron | 45.0% |
| ! | TTGGAAGCATAGCTTGACAG+TGG | - | chr4.2:895172-895191 | None:intergenic | 45.0% |
| !! | ATTTTCACGGATAGGTTGGG+TGG | + | chr4.2:892396-892415 | MS.gene62644:intron | 45.0% |
| !! | GAAGTAGTTGATGGCAATGG+AGG | - | chr4.2:894015-894034 | None:intergenic | 45.0% |
| !! | GGTGAAGTAGTTGATGGCAA+TGG | - | chr4.2:894018-894037 | None:intergenic | 45.0% |
| !!! | CGGTTTTTCTGGTTTGGGTT+GGG | + | chr4.2:893209-893228 | MS.gene62644:intron | 45.0% |
| !!! | GGTTTTTCTGGTTTGGGTTG+GGG | + | chr4.2:893210-893229 | MS.gene62644:intron | 45.0% |
| !!! | TCGGTTTTTCTGGTTTGGGT+TGG | + | chr4.2:893208-893227 | MS.gene62644:intron | 45.0% |
| !!! | AATCATTTTAAAAAAATAAA+CGG | + | chr4.2:895075-895094 | MS.gene62644:intron | 5.0% |
| AAAGGCTGTGAAACTGGGAC+AGG | - | chr4.2:894087-894106 | None:intergenic | 50.0% | |
| AAATAGGAGGGATGCAGGGA+AGG | + | chr4.2:892173-892192 | MS.gene62644:intron | 50.0% | |
| AACCCCATTTGCAGGTGGAA+TGG | + | chr4.2:893623-893642 | MS.gene62644:CDS | 50.0% | |
| AAGAAGCTTTCCACTGCTGG+TGG | + | chr4.2:891180-891199 | MS.gene62644:CDS | 50.0% | |
| ACAACTCCCCAAGCATTAGG+AGG | - | chr4.2:893889-893908 | None:intergenic | 50.0% | |
| ACTGGGACAGGTGTAGATGA+AGG | - | chr4.2:894075-894094 | None:intergenic | 50.0% | |
| ACTGGTGGAGGTCCAATTGA+AGG | - | chr4.2:894478-894497 | None:intergenic | 50.0% | |
| ACTTGAAGACATGGGTGCAG+CGG | - | chr4.2:894160-894179 | None:intergenic | 50.0% | |
| AGGTAGACTTCGTTAGTGGC+AGG | - | chr4.2:894529-894548 | None:intergenic | 50.0% | |
| AGGTCCAATTGAAGGACCAC+CGG | - | chr4.2:894470-894489 | None:intergenic | 50.0% | |
| AGTGAATTCAGACTTGGCCC+AGG | + | chr4.2:895488-895507 | MS.gene62644:intron | 50.0% | |
| ATACTTGAGAGCAGGCTAGC+TGG | + | chr4.2:895665-895684 | MS.gene62644:CDS | 50.0% | |
| ATATCCTCCACGATCAACCG+TGG | + | chr4.2:893668-893687 | MS.gene62644:CDS | 50.0% | |
| ATCCCATCAACCCCATTTGC+AGG | + | chr4.2:893615-893634 | MS.gene62644:CDS | 50.0% | |
| ATCTGCAGCAGCAGAGAGAT+AGG | - | chr4.2:893846-893865 | None:intergenic | 50.0% | |
| CAACAGCCACCATACATGTC+AGG | - | chr4.2:893364-893383 | None:intergenic | 50.0% | |
| CAACTCCCCAAGCATTAGGA+GGG | - | chr4.2:893888-893907 | None:intergenic | 50.0% | |
| CACCATCTAGAGAAATCCGC+CGG | + | chr4.2:892342-892361 | MS.gene62644:intron | 50.0% | |
| CACCATTCCACCTGCAAATG+GGG | - | chr4.2:893628-893647 | None:intergenic | 50.0% | |
| CATTCAGGTGGGAGGCAAAA+GGG | - | chr4.2:895127-895146 | None:intergenic | 50.0% | |
| GAAAGCCCAGGAGCTATTGA+TGG | - | chr4.2:894186-894205 | None:intergenic | 50.0% | |
| GCACCATTCCACCTGCAAAT+GGG | - | chr4.2:893629-893648 | None:intergenic | 50.0% | |
| GCAGAGCAAGAAGGAGAAGA+AGG | + | chr4.2:892455-892474 | MS.gene62644:intron | 50.0% | |
| GGAACAACTCCCCAAGCATT+AGG | - | chr4.2:893892-893911 | None:intergenic | 50.0% | |
| GGTTGATCGTGGAGGATATC+CGG | - | chr4.2:893667-893686 | None:intergenic | 50.0% | |
| GTAACTTCCATTCAGGTGGG+AGG | - | chr4.2:895135-895154 | None:intergenic | 50.0% | |
| GTCAGAAATAGGAGGGATGC+AGG | + | chr4.2:892168-892187 | MS.gene62644:intron | 50.0% | |
| GTGAACTTTGAGTGGCCATG+TGG | - | chr4.2:894131-894150 | None:intergenic | 50.0% | |
| GTGGACCTGAAGAACGTGAA+TGG | - | chr4.2:891211-891230 | None:intergenic | 50.0% | |
| TATCCTCCACGATCAACCGT+GGG | + | chr4.2:893669-893688 | MS.gene62644:CDS | 50.0% | |
| TCCACCTTGGCTGTCTTTGA+TGG | - | chr4.2:893594-893613 | None:intergenic | 50.0% | |
| TCCATCAAAGACAGCCAAGG+TGG | + | chr4.2:893590-893609 | MS.gene62644:CDS | 50.0% | |
| TCTGCGAAAGAAGCTGACCT+GGG | - | chr4.2:895508-895527 | None:intergenic | 50.0% | |
| TGCCACTAACGAAGTCTACC+TGG | + | chr4.2:894528-894547 | MS.gene62644:CDS | 50.0% | |
| TTAGGGGGTGGACAAATGGT+TGG | + | chr4.2:892304-892323 | MS.gene62644:intron | 50.0% | |
| ! | CACCTGCAAATGGGGTTGAT+GGG | - | chr4.2:893620-893639 | None:intergenic | 50.0% |
| ! | CTAGATGGTGGTTTACCGAC+TGG | - | chr4.2:892332-892351 | None:intergenic | 50.0% |
| ! | GAAGAAGCGCGTTGCTTCAA+AGG | + | chr4.2:891065-891084 | MS.gene62644:CDS | 50.0% |
| !! | ATTAGTCTTGAGACCCGACC+CGG | - | chr4.2:893002-893021 | None:intergenic | 50.0% |
| !! | GGTTGCTGTGGGTATTGAAC+CGG | - | chr4.2:893967-893986 | None:intergenic | 50.0% |
| !! | TGGTAGCGGTCAGTTTCTCA+TGG | + | chr4.2:893097-893116 | MS.gene62644:intron | 50.0% |
| !! | TTCTGGTTTGGGTTGGGGTT+CGG | + | chr4.2:893215-893234 | MS.gene62644:intron | 50.0% |
| !!! | GGAGATGGGCTGAGATTTTC+CGG | - | chr4.2:892368-892387 | None:intergenic | 50.0% |
| AATGGACATGCCACCAGCAG+TGG | - | chr4.2:891193-891212 | None:intergenic | 55.0% | |
| ACCAGGCCCTCCTAATGCTT+GGG | + | chr4.2:893879-893898 | MS.gene62644:CDS | 55.0% | |
| ACTAAGGCAGAACTTGGCCG+TGG | - | chr4.2:892526-892545 | None:intergenic | 55.0% | |
| AGCGCGTTGCTTCAAAGGTG+TGG | + | chr4.2:891070-891089 | MS.gene62644:CDS | 55.0% | |
| ATCTAGAGAAATCCGCCGGC+CGG | + | chr4.2:892346-892365 | MS.gene62644:intron | 55.0% | |
| CATTGGTCGAATTGGGCCCA+CGG | - | chr4.2:893688-893707 | None:intergenic | 55.0% | |
| CCACCTGCAAATGGGGTTGA+TGG | - | chr4.2:893621-893640 | None:intergenic | 55.0% | |
| CCATCAACCCCATTTGCAGG+TGG | + | chr4.2:893618-893637 | MS.gene62644:CDS | 55.0% | |
| CCATTCAGGTGGGAGGCAAA+AGG | - | chr4.2:895128-895147 | None:intergenic | 55.0% | |
| CTCTGCGAAAGAAGCTGACC+TGG | - | chr4.2:895509-895528 | None:intergenic | 55.0% | |
| CTGATGTGGAGGCCTTCTCA+CGG | - | chr4.2:892628-892647 | None:intergenic | 55.0% | |
| GACATGGGTGCAGCGGAAAA+TGG | - | chr4.2:894153-894172 | None:intergenic | 55.0% | |
| GGAGGATATCCGGTACCCAT+AGG | - | chr4.2:893657-893676 | None:intergenic | 55.0% | |
| GGAGGCCTCACATTCTGAAC+AGG | - | chr4.2:893997-894016 | None:intergenic | 55.0% | |
| GGAGTTAGGGGGTGGACAAA+TGG | + | chr4.2:892300-892319 | MS.gene62644:intron | 55.0% | |
| GGATATCCGGTACCCATAGG+AGG | - | chr4.2:893654-893673 | None:intergenic | 55.0% | |
| GGATGACGAGGCAATGTCCA+TGG | + | chr4.2:894555-894574 | MS.gene62644:CDS | 55.0% | |
| GGCACCATTCCACCTGCAAA+TGG | - | chr4.2:893630-893649 | None:intergenic | 55.0% | |
| GGTGTAGATGAAGGCAGTCC+AGG | - | chr4.2:894066-894085 | None:intergenic | 55.0% | |
| GTAGATGAAGGCAGTCCAGG+AGG | - | chr4.2:894063-894082 | None:intergenic | 55.0% | |
| GTTAGTGGCAGGCTGAGTAG+CGG | - | chr4.2:894518-894537 | None:intergenic | 55.0% | |
| TACCAGGCCCTCCTAATGCT+TGG | + | chr4.2:893878-893897 | MS.gene62644:CDS | 55.0% | |
| TATCCGGTACCCATAGGAGG+TGG | - | chr4.2:893651-893670 | None:intergenic | 55.0% | |
| TGAGCAGCCAAGACATCTGG+CGG | - | chr4.2:891982-892001 | None:intergenic | 55.0% | |
| TTAGTGGCAGGCTGAGTAGC+GGG | - | chr4.2:894517-894536 | None:intergenic | 55.0% | |
| TTGCCTCGTCATCCCAAACC+AGG | - | chr4.2:894549-894568 | None:intergenic | 55.0% | |
| ! | AGGGTGCCAAATGCGAAACC+TGG | + | chr4.2:891913-891932 | MS.gene62644:intron | 55.0% |
| ! | CCTTTTGCCTCCCACCTGAA+TGG | + | chr4.2:895125-895144 | MS.gene62644:intron | 55.0% |
| ! | CGGCGGATTTCTCTAGATGG+TGG | - | chr4.2:892344-892363 | None:intergenic | 55.0% |
| ! | GGGTTCTAACGAAAGCGGGT+GGG | + | chr4.2:892420-892439 | MS.gene62644:intron | 55.0% |
| ! | TGCAACTGTGTCGGCACTGA+CGG | - | chr4.2:892498-892517 | None:intergenic | 55.0% |
| ! | TTCACGGATAGGTTGGGTGG+CGG | + | chr4.2:892399-892418 | MS.gene62644:intron | 55.0% |
| !! | ATGGGCTGAGATTTTCCGGC+CGG | - | chr4.2:892364-892383 | None:intergenic | 55.0% |
| !! | CGAAAGCGGGTGGGTTGAAA+TGG | + | chr4.2:892429-892448 | MS.gene62644:intron | 55.0% |
| !! | CTACCTGGTTTGGGATGACG+AGG | + | chr4.2:894543-894562 | MS.gene62644:CDS | 55.0% |
| !! | GGAATGGTGCCACCTCCTAT+GGG | + | chr4.2:893639-893658 | MS.gene62644:CDS | 55.0% |
| !! | GGTTGATGGGATGTCCACCT+TGG | - | chr4.2:893607-893626 | None:intergenic | 55.0% |
| !! | GTGGCGGGTTCTAACGAAAG+CGG | + | chr4.2:892415-892434 | MS.gene62644:intron | 55.0% |
| !! | TGCTGTGGGTATTGAACCGG+AGG | - | chr4.2:893964-893983 | None:intergenic | 55.0% |
| !! | TGGAATGGTGCCACCTCCTA+TGG | + | chr4.2:893638-893657 | MS.gene62644:CDS | 55.0% |
| !! | TGGCGGGTTCTAACGAAAGC+GGG | + | chr4.2:892416-892435 | MS.gene62644:intron | 55.0% |
| !! | TGTGGGTATTGAACCGGAGG+AGG | - | chr4.2:893961-893980 | None:intergenic | 55.0% |
| AACCATGGCTGAGGTCGAGG+TGG | - | chr4.2:893913-893932 | None:intergenic | 60.0% | |
| ATTGGGCCCACGGTTGATCG+TGG | - | chr4.2:893678-893697 | None:intergenic | 60.0% | |
| CCAGGCCCTCCTAATGCTTG+GGG | + | chr4.2:893880-893899 | MS.gene62644:CDS | 60.0% | |
| CGTGAGAAGGCCTCCACATC+AGG | + | chr4.2:892626-892645 | MS.gene62644:intron | 60.0% | |
| GCTTCTGGCCCAAATACCGG+TGG | + | chr4.2:894451-894470 | MS.gene62644:CDS | 60.0% | |
| GGAAACCATGGCTGAGGTCG+AGG | - | chr4.2:893916-893935 | None:intergenic | 60.0% | |
| GGAGGCCTTCTCACGGTTGA+AGG | - | chr4.2:892621-892640 | None:intergenic | 60.0% | |
| GGGGATTCCGCCAGATGTCT+TGG | + | chr4.2:891972-891991 | MS.gene62644:CDS | 60.0% | |
| GTGCCACCTCCTATGGGTAC+CGG | + | chr4.2:893645-893664 | MS.gene62644:CDS | 60.0% | |
| GTTGGAGGCTGGGGAAACCA+TGG | - | chr4.2:893928-893947 | None:intergenic | 60.0% | |
| TTAGGAGGGCCTGGTACAGC+AGG | - | chr4.2:893874-893893 | None:intergenic | 60.0% | |
| TTCCACCTCGACCTCAGCCA+TGG | + | chr4.2:893908-893927 | MS.gene62644:CDS | 60.0% | |
| ! | CGGGTTCTAACGAAAGCGGG+TGG | + | chr4.2:892419-892438 | MS.gene62644:intron | 60.0% |
| ! | GGCCGGCGGATTTCTCTAGA+TGG | - | chr4.2:892347-892366 | None:intergenic | 60.0% |
| ! | TCACGGATAGGTTGGGTGGC+GGG | + | chr4.2:892400-892419 | MS.gene62644:intron | 60.0% |
| CCCCAAGCATTAGGAGGGCC+TGG | - | chr4.2:893883-893902 | None:intergenic | 65.0% | |
| GGCTGGGGAAACCATGGCTG+AGG | - | chr4.2:893922-893941 | None:intergenic | 65.0% | |
| ! | GAGCAGGCTAGCTGGTCGCA+TGG | + | chr4.2:895673-895692 | MS.gene62644:CDS | 65.0% |
| ! | GGCTGAGATTTTCCGGCCGG+CGG | - | chr4.2:892361-892380 | None:intergenic | 65.0% |
| GGGCCCACGGTTGATCGTGG+AGG | - | chr4.2:893675-893694 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 891054 | 895703 | 891054 | ID=MS.gene62644 |
| chr4.2 | mRNA | 891054 | 895703 | 891054 | ID=MS.gene62644.t1;Parent=MS.gene62644 |
| chr4.2 | exon | 891054 | 891247 | 891054 | ID=MS.gene62644.t1.exon1;Parent=MS.gene62644.t1 |
| chr4.2 | CDS | 891054 | 891247 | 891054 | ID=cds.MS.gene62644.t1;Parent=MS.gene62644.t1 |
| chr4.2 | exon | 891915 | 892015 | 891915 | ID=MS.gene62644.t1.exon2;Parent=MS.gene62644.t1 |
| chr4.2 | CDS | 891915 | 892015 | 891915 | ID=cds.MS.gene62644.t1;Parent=MS.gene62644.t1 |
| chr4.2 | exon | 893580 | 893706 | 893580 | ID=MS.gene62644.t1.exon3;Parent=MS.gene62644.t1 |
| chr4.2 | CDS | 893580 | 893706 | 893580 | ID=cds.MS.gene62644.t1;Parent=MS.gene62644.t1 |
| chr4.2 | exon | 893864 | 894282 | 893864 | ID=MS.gene62644.t1.exon4;Parent=MS.gene62644.t1 |
| chr4.2 | CDS | 893864 | 894282 | 893864 | ID=cds.MS.gene62644.t1;Parent=MS.gene62644.t1 |
| chr4.2 | exon | 894422 | 894576 | 894422 | ID=MS.gene62644.t1.exon5;Parent=MS.gene62644.t1 |
| chr4.2 | CDS | 894422 | 894576 | 894422 | ID=cds.MS.gene62644.t1;Parent=MS.gene62644.t1 |
| chr4.2 | exon | 894670 | 894723 | 894670 | ID=MS.gene62644.t1.exon6;Parent=MS.gene62644.t1 |
| chr4.2 | CDS | 894670 | 894723 | 894670 | ID=cds.MS.gene62644.t1;Parent=MS.gene62644.t1 |
| chr4.2 | exon | 895632 | 895703 | 895632 | ID=MS.gene62644.t1.exon7;Parent=MS.gene62644.t1 |
| chr4.2 | CDS | 895632 | 895703 | 895632 | ID=cds.MS.gene62644.t1;Parent=MS.gene62644.t1 |
| Gene Sequence |
| Protein sequence |
