AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62672

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62672.t1 MTR_8g105790 99.197 249 2 0 1 249 1 249 4.90e-179 491
MS.gene62672.t1 MTR_8g105810 86.800 250 32 1 1 249 1 250 1.65e-157 437
MS.gene62672.t1 MTR_7g076320 26.613 248 175 3 1 241 3 250 2.96e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62672.t1 AT2G01770 83.122 237 40 0 9 245 10 246 3.95e-144 403

Find 78 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCCTCTGCAGCTGCTTA+TGG 0.219518 4.2:+1225495 MS.gene62672:CDS
GCACTATACAATGCTCTTCT+TGG 0.231503 4.2:-1225273 None:intergenic
TTGATTGCTTTGCTTATCTT+TGG 0.233804 4.2:+1225402 MS.gene62672:CDS
TTACGATACGAACCAGTTTC+TGG 0.248340 4.2:-1223745 None:intergenic
ATTGCTATTGCTTACGTATT+GGG 0.289589 4.2:+1225303 MS.gene62672:CDS
GCTTTGGAAACTGCTCTAAT+TGG 0.299231 4.2:+1225468 MS.gene62672:CDS
CTCTGCAGCTGCTTATGGTT+TGG 0.327872 4.2:+1225500 MS.gene62672:CDS
TCACCGGCAACAAGCCTATC+AGG 0.353963 4.2:+1225442 MS.gene62672:CDS
GGAATAGAGGCACATGAATA+TGG 0.366935 4.2:+1223874 MS.gene62672:CDS
TGCTGAGGTGGCAGAAATAT+TGG 0.367269 4.2:+1223843 MS.gene62672:CDS
GTTTCCAAAGCACTCCTGAT+AGG 0.367638 4.2:-1225456 None:intergenic
TTGGCATGGCAGGTTTGAGC+TGG 0.371854 4.2:+1225233 MS.gene62672:intron
GCAGAAATATTGGCTGAGTA+TGG 0.383074 4.2:+1223853 MS.gene62672:CDS
TACAATGCTCTTCTTGGATC+TGG 0.387148 4.2:-1225267 None:intergenic
GGCGGCGACTTCGGCGATGC+CGG 0.389084 4.2:-1223523 None:intergenic
GCCCTCGCCGCCGGTCTCTC+TGG 0.390424 4.2:+1223468 MS.gene62672:CDS
CGCCGCCGGCGCCATCTCCA+TGG 0.394416 4.2:+1223539 MS.gene62672:CDS
GGCTCTGTTTCTCAGGTTCA+AGG 0.398656 4.2:-1223353 None:intergenic
TTGAGAAGGCTCTGTTTCTC+AGG 0.409645 4.2:-1223360 None:intergenic
TGTGTTGTCGTGAAGGTATT+TGG 0.412813 4.2:+1223654 MS.gene62672:intron
GGCGCCATCTCCATGGGTCT+CGG 0.413142 4.2:+1223546 MS.gene62672:CDS
AGAACAGCCTCTGATGCATT+AGG 0.414520 4.2:-1225360 None:intergenic
GGCATCGCCGAAGTCGCCGC+CGG 0.418402 4.2:+1223525 MS.gene62672:CDS
GATGGCGCCGGCGGCGACTT+CGG 0.423405 4.2:-1223532 None:intergenic
ATCGTTACAGTACCAGAAAC+TGG 0.426709 4.2:+1223733 MS.gene62672:CDS
AGACCGGCGGCGAGGGCGAA+AGG 0.430567 4.2:-1223462 None:intergenic
AATTGCTATTGCTTACGTAT+TGG 0.433881 4.2:+1225302 MS.gene62672:CDS
ATTACAATAGAGAATTGAAA+AGG 0.434289 4.2:+1223698 MS.gene62672:CDS
ACTCCTGATAGGCTTGTTGC+CGG 0.441410 4.2:-1225445 None:intergenic
GCTTATCTTTGGCTTTGTCA+AGG 0.444850 4.2:+1225413 MS.gene62672:CDS
CTTATCTTTGGCTTTGTCAA+GGG 0.448135 4.2:+1225414 MS.gene62672:CDS
TTTGTCAAGGGATGCTTCAC+CGG 0.449841 4.2:+1225426 MS.gene62672:CDS
CAAGCCTATCAGGAGTGCTT+TGG 0.453512 4.2:+1225452 MS.gene62672:CDS
GTTCCTTTCGCCCTCGCCGC+CGG 0.459488 4.2:+1223459 MS.gene62672:CDS
AGCATTGGCGCCAGAGAGAC+CGG 0.471916 4.2:-1223478 None:intergenic
GCCAGAGAGACCGGCGGCGA+GGG 0.479185 4.2:-1223469 None:intergenic
TCTTCCATCGTTCTCACTGC+CGG 0.485751 4.2:+1223504 MS.gene62672:CDS
GGCTGTTCTTGTTTCAGTGG+TGG 0.490681 4.2:+1225374 MS.gene62672:CDS
ATCATCATCGGCGTTTCTGA+TGG 0.491623 4.2:+1223429 MS.gene62672:CDS
AGCTGCTTATGGTTTGGCAA+AGG 0.497745 4.2:+1225506 MS.gene62672:CDS
CTTGTTCAAATGGCTGGTAA+TGG 0.501587 4.2:+1223312 None:intergenic
TGAAGGTATTTGGCAGCAAA+AGG 0.504633 4.2:+1223664 MS.gene62672:intron
AGAGGCTGTTCTTGTTTCAG+TGG 0.506618 4.2:+1225371 MS.gene62672:CDS
GCCGCCGGCGCCATCTCCAT+GGG 0.507839 4.2:+1223540 MS.gene62672:CDS
ATTGGCTGAGTATGGAATAG+AGG 0.509860 4.2:+1223861 MS.gene62672:CDS
TGGCATGGCAGGTTTGAGCT+GGG 0.517647 4.2:+1225234 MS.gene62672:intron
ACCCATGGAGATGGCGCCGG+CGG 0.521241 4.2:-1223541 None:intergenic
GCATTAGGAATGAACATGTA+AGG 0.527058 4.2:-1225345 None:intergenic
CATACACTTGTTCAAATGGC+TGG 0.531327 4.2:+1223306 None:intergenic
AACGATGGAAGAAGTAGCAT+TGG 0.541787 4.2:-1223493 None:intergenic
TTACAATAGAGAATTGAAAA+GGG 0.552550 4.2:+1223699 MS.gene62672:CDS
TTTCTCAGAGCATTCACCAC+AGG 0.554204 4.2:-1223898 None:intergenic
GGCGGCGAGGGCGAAAGGAA+CGG 0.558595 4.2:-1223457 None:intergenic
ATAAGCAGCTGCAGAGGCAA+TGG 0.561549 4.2:-1225493 None:intergenic
TTTCAGTGTGGCGATTGAGA+AGG 0.562660 4.2:-1223374 None:intergenic
CCCTCCGAGACCCATGGAGA+TGG 0.565170 4.2:-1223550 None:intergenic
CGCCAGAGAGACCGGCGGCG+AGG 0.570875 4.2:-1223470 None:intergenic
TATTTCAGAAGCTGCTGAGG+TGG 0.571673 4.2:+1223831 MS.gene62672:intron
GCTATTGCTTACGTATTGGG+TGG 0.579839 4.2:+1225306 MS.gene62672:CDS
GAGACCCATGGAGATGGCGC+CGG 0.581337 4.2:-1223544 None:intergenic
CCATCTCCATGGGTCTCGGA+GGG 0.588120 4.2:+1223550 MS.gene62672:CDS
TATTATTTCAGAAGCTGCTG+AGG 0.589707 4.2:+1223828 MS.gene62672:intron
ACTGAAAAGCACTTCACCGC+CGG 0.593901 4.2:+1223390 MS.gene62672:CDS
GATGTCACGGACGATCTCAC+CGG 0.594283 4.2:-1223409 None:intergenic
ATGAACATGTAAGGAATGAG+AGG 0.596128 4.2:-1225336 None:intergenic
AAAGAGCATGAAACTATGGA+TGG 0.598379 4.2:-1225533 None:intergenic
ATGTTACCCTCCGAGACCCA+TGG 0.602772 4.2:-1223556 None:intergenic
TGAGAAAGAATCCTCAAGCA+TGG 0.613689 4.2:+1223914 MS.gene62672:CDS
GCCATCTCCATGGGTCTCGG+AGG 0.615331 4.2:+1223549 MS.gene62672:CDS
CAAACCATAAGCAGCTGCAG+AGG 0.616863 4.2:-1225499 None:intergenic
GTTCATTCCTAATGCATCAG+AGG 0.624017 4.2:+1225353 MS.gene62672:CDS
ATGAAATCAAGCCATGCTTG+AGG 0.632968 4.2:-1223925 None:intergenic
ATCGTCCGTGACATCATCAT+CGG 0.638810 4.2:+1223417 MS.gene62672:CDS
AAACGCCGATGATGATGTCA+CGG 0.645259 4.2:-1223422 None:intergenic
GTCACGGACGATCTCACCGG+CGG 0.688191 4.2:-1223406 None:intergenic
GGCACATGAATATGGACCTG+TGG 0.703794 4.2:+1223882 MS.gene62672:CDS
ATTGGCGCCAGAGAGACCGG+CGG 0.726652 4.2:-1223475 None:intergenic
GATGCCGGCAGTGAGAACGA+TGG 0.747818 4.2:-1223508 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAAATAAGATTGATA+TGG + chr4.2:1224845-1224864 MS.gene62672:intron 10.0%
!!! AAATTTATAGAAAAAGTTTT+CGG - chr4.2:1224332-1224351 None:intergenic 10.0%
!! GAACAAATTAATTAACAAAT+TGG + chr4.2:1225206-1225225 MS.gene62672:intron 15.0%
!! TATAAGTAAATAAATATCTC+TGG + chr4.2:1224724-1224743 MS.gene62672:intron 15.0%
!! TATGATAAAAATTGAAATTG+AGG - chr4.2:1224444-1224463 None:intergenic 15.0%
!! TTCTTCATAGTATTAAAAAA+AGG - chr4.2:1224931-1224950 None:intergenic 15.0%
!! AATTTGTGTGAAGATAAAAT+AGG + chr4.2:1224401-1224420 MS.gene62672:intron 20.0%
!! ATTACAATAGAGAATTGAAA+AGG + chr4.2:1223698-1223717 MS.gene62672:CDS 20.0%
!! TAATTAACAAATTGGTTACT+TGG + chr4.2:1225214-1225233 MS.gene62672:intron 20.0%
!! TTACAATAGAGAATTGAAAA+GGG + chr4.2:1223699-1223718 MS.gene62672:CDS 20.0%
!!! AAAGTAATTTGTCCAAAATT+TGG + chr4.2:1224007-1224026 MS.gene62672:intron 20.0%
!!! GAAATTAATTCACGTTTTTA+AGG - chr4.2:1225145-1225164 None:intergenic 20.0%
!!! GGTTTGGAATAAAAAAAAAA+TGG - chr4.2:1224468-1224487 None:intergenic 20.0%
!!! GTATTCTAGAAACAATAAAA+AGG - chr4.2:1225116-1225135 None:intergenic 20.0%
!!! TACTTTAGAAATCAAATTAG+AGG + chr4.2:1224870-1224889 MS.gene62672:intron 20.0%
!!! TGTTTTGAAAAACGTTTTTT+AGG - chr4.2:1224772-1224791 None:intergenic 20.0%
! AAGGTGCATGTATATAAAAT+TGG - chr4.2:1225097-1225116 None:intergenic 25.0%
! ACGTGAATTAATTTCTACAA+TGG + chr4.2:1225150-1225169 MS.gene62672:intron 25.0%
! GAAGATAAAATAGGTAAACA+AGG + chr4.2:1224410-1224429 MS.gene62672:intron 25.0%
! TAAATAAATATCTCTGGTCT+TGG + chr4.2:1224730-1224749 MS.gene62672:intron 25.0%
! TATATTCATCCACCTTTATA+TGG + chr4.2:1224976-1224995 MS.gene62672:intron 25.0%
!! ATGAATATAAGTTGGATTCA+TGG - chr4.2:1224965-1224984 None:intergenic 25.0%
!! GATGTTAATTTAAAGTTGTG+TGG - chr4.2:1224283-1224302 None:intergenic 25.0%
!!! ACATTGATTCTACAATACAA+TGG - chr4.2:1224489-1224508 None:intergenic 25.0%
!!! ATTTTTTTGTACAGCTAGTT+AGG + chr4.2:1224653-1224672 MS.gene62672:intron 25.0%
AAAGGTGGATGAATATAAGT+TGG - chr4.2:1224973-1224992 None:intergenic 30.0%
AATTAGAGGTAGAGATTTAC+TGG + chr4.2:1224884-1224903 MS.gene62672:intron 30.0%
ATGAATAAATGATCATGTGC+AGG + chr4.2:1224676-1224695 MS.gene62672:intron 30.0%
ATGTAGAAACCATATAAAGG+TGG - chr4.2:1224988-1225007 None:intergenic 30.0%
GATTCTACAATACAATGGTT+TGG - chr4.2:1224484-1224503 None:intergenic 30.0%
GTTGAATGTTAGTTATATGC+TGG + chr4.2:1224054-1224073 MS.gene62672:intron 30.0%
TAATATTAAGCATATGCTCC+TGG + chr4.2:1224552-1224571 MS.gene62672:intron 30.0%
TGATTTCAGATTCCAAACTT+TGG + chr4.2:1224158-1224177 MS.gene62672:intron 30.0%
TGCATGTAGAAACCATATAA+AGG - chr4.2:1224991-1225010 None:intergenic 30.0%
TTGATTGCTTTGCTTATCTT+TGG + chr4.2:1225402-1225421 MS.gene62672:CDS 30.0%
! AATTGCTATTGCTTACGTAT+TGG + chr4.2:1225302-1225321 MS.gene62672:CDS 30.0%
! ATTGCTATTGCTTACGTATT+GGG + chr4.2:1225303-1225322 MS.gene62672:CDS 30.0%
! TTTTATCCGTTTGCATTTCA+TGG - chr4.2:1224579-1224598 None:intergenic 30.0%
AACAAATTGGTTACTTGGCA+TGG + chr4.2:1225219-1225238 MS.gene62672:intron 35.0%
ATAAAAGAAACCCACGTGTA+AGG - chr4.2:1224629-1224648 None:intergenic 35.0%
ATGAACATGTAAGGAATGAG+AGG - chr4.2:1225339-1225358 None:intergenic 35.0%
GAGTCCAAACCAAATAGTAT+CGG - chr4.2:1224203-1224222 None:intergenic 35.0%
GCATTAGGAATGAACATGTA+AGG - chr4.2:1225348-1225367 None:intergenic 35.0%
TACACCGATACTATTTGGTT+TGG + chr4.2:1224196-1224215 MS.gene62672:intron 35.0%
TATTATTTCAGAAGCTGCTG+AGG + chr4.2:1223828-1223847 MS.gene62672:intron 35.0%
! GCATTGCAAACTCCAAATTT+TGG - chr4.2:1224022-1224041 None:intergenic 35.0%
!! AAATATCTCTGGTCTTGGTT+TGG + chr4.2:1224735-1224754 MS.gene62672:intron 35.0%
!! ATTCACGTTTTTAAGGAAGC+AGG - chr4.2:1225138-1225157 None:intergenic 35.0%
!! CTTATCTTTGGCTTTGTCAA+GGG + chr4.2:1225414-1225433 MS.gene62672:CDS 35.0%
!!! AAAGAGAAAGGCACTTTTTC+TGG + chr4.2:1224092-1224111 MS.gene62672:intron 35.0%
AACGATGGAAGAAGTAGCAT+TGG - chr4.2:1223496-1223515 None:intergenic 40.0%
ACTATGTTGTGTTGTCGTGA+AGG + chr4.2:1223647-1223666 MS.gene62672:intron 40.0%
AGTTATATGCTGGCAAGAGT+GGG + chr4.2:1224064-1224083 MS.gene62672:intron 40.0%
ATCGTTACAGTACCAGAAAC+TGG + chr4.2:1223733-1223752 MS.gene62672:CDS 40.0%
ATGAAATCAAGCCATGCTTG+AGG - chr4.2:1223928-1223947 None:intergenic 40.0%
ATTGGCTGAGTATGGAATAG+AGG + chr4.2:1223861-1223880 MS.gene62672:CDS 40.0%
CACAGTACACCGATACTATT+TGG + chr4.2:1224191-1224210 MS.gene62672:intron 40.0%
GCACTATACAATGCTCTTCT+TGG - chr4.2:1225276-1225295 None:intergenic 40.0%
GTTCATTCCTAATGCATCAG+AGG + chr4.2:1225353-1225372 MS.gene62672:CDS 40.0%
TACAATGCTCTTCTTGGATC+TGG - chr4.2:1225270-1225289 None:intergenic 40.0%
TAGAGGTAGAGATTTACTGG+TGG + chr4.2:1224887-1224906 MS.gene62672:intron 40.0%
TAGTTATATGCTGGCAAGAG+TGG + chr4.2:1224063-1224082 MS.gene62672:intron 40.0%
TGAGAAAGAATCCTCAAGCA+TGG + chr4.2:1223914-1223933 MS.gene62672:CDS 40.0%
TTACGATACGAACCAGTTTC+TGG - chr4.2:1223748-1223767 None:intergenic 40.0%
! GCAGAAATATTGGCTGAGTA+TGG + chr4.2:1223853-1223872 MS.gene62672:CDS 40.0%
! GGAATAGAGGCACATGAATA+TGG + chr4.2:1223874-1223893 MS.gene62672:CDS 40.0%
!! CAAATAGTATCGGTGTACTG+TGG - chr4.2:1224193-1224212 None:intergenic 40.0%
!! GCTTATCTTTGGCTTTGTCA+AGG + chr4.2:1225413-1225432 MS.gene62672:CDS 40.0%
!! GCTTTGGAAACTGCTCTAAT+TGG + chr4.2:1225468-1225487 MS.gene62672:CDS 40.0%
!! TGAAGGTATTTGGCAGCAAA+AGG + chr4.2:1223664-1223683 MS.gene62672:intron 40.0%
!! TGTGTTGTCGTGAAGGTATT+TGG + chr4.2:1223654-1223673 MS.gene62672:intron 40.0%
!!! AAAGGCACTTTTTCTGGTTG+TGG + chr4.2:1224098-1224117 MS.gene62672:intron 40.0%
!!! AAGGCACTTTTTCTGGTTGT+GGG + chr4.2:1224099-1224118 MS.gene62672:intron 40.0%
AATTGGTTACTTGGCATGGC+AGG + chr4.2:1225223-1225242 MS.gene62672:intron 45.0%
AGAACAGCCTCTGATGCATT+AGG - chr4.2:1225363-1225382 None:intergenic 45.0%
ATCATCATCGGCGTTTCTGA+TGG + chr4.2:1223429-1223448 MS.gene62672:CDS 45.0%
ATCCTAGAGAACCTTACACG+TGG + chr4.2:1224615-1224634 MS.gene62672:intron 45.0%
ATCGTCCGTGACATCATCAT+CGG + chr4.2:1223417-1223436 MS.gene62672:CDS 45.0%
CCTGGTCCATGAAATGCAAA+CGG + chr4.2:1224570-1224589 MS.gene62672:intron 45.0%
GAGTGGGATTGGAAAGAGAA+AGG + chr4.2:1224080-1224099 MS.gene62672:intron 45.0%
GCATGTCCACACTGAAAAAG+TGG - chr4.2:1224128-1224147 None:intergenic 45.0%
GCTATTGCTTACGTATTGGG+TGG + chr4.2:1225306-1225325 MS.gene62672:CDS 45.0%
TATTTCAGAAGCTGCTGAGG+TGG + chr4.2:1223831-1223850 MS.gene62672:intron 45.0%
TCCTAGAGAACCTTACACGT+GGG + chr4.2:1224616-1224635 MS.gene62672:intron 45.0%
TGCTGAGGTGGCAGAAATAT+TGG + chr4.2:1223843-1223862 MS.gene62672:CDS 45.0%
TTTCAGTGTGGCGATTGAGA+AGG - chr4.2:1223377-1223396 None:intergenic 45.0%
TTTGTCAAGGGATGCTTCAC+CGG + chr4.2:1225426-1225445 MS.gene62672:CDS 45.0%
! AAACGCCGATGATGATGTCA+CGG - chr4.2:1223425-1223444 None:intergenic 45.0%
! AGAGGCTGTTCTTGTTTCAG+TGG + chr4.2:1225371-1225390 MS.gene62672:CDS 45.0%
! AGCTGCTTATGGTTTGGCAA+AGG + chr4.2:1225506-1225525 MS.gene62672:CDS 45.0%
! GTTTCCAAAGCACTCCTGAT+AGG - chr4.2:1225459-1225478 None:intergenic 45.0%
! TTGAGAAGGCTCTGTTTCTC+AGG - chr4.2:1223363-1223382 None:intergenic 45.0%
! TTTCTCAGAGCATTCACCAC+AGG - chr4.2:1223901-1223920 None:intergenic 45.0%
!!! GGGTTTCCACTTTTTCAGTG+TGG + chr4.2:1224119-1224138 MS.gene62672:intron 45.0%
!!! ATTTTATTTATTCTAAAAAA+TGG + chr4.2:1223774-1223793 MS.gene62672:intron 5.0%
ACCCACGTGTAAGGTTCTCT+AGG - chr4.2:1224620-1224639 None:intergenic 50.0%
ATAAGCAGCTGCAGAGGCAA+TGG - chr4.2:1225496-1225515 None:intergenic 50.0%
ATTGCCTCTGCAGCTGCTTA+TGG + chr4.2:1225495-1225514 MS.gene62672:CDS 50.0%
CAAACCATAAGCAGCTGCAG+AGG - chr4.2:1225502-1225521 None:intergenic 50.0%
CCGTTTGCATTTCATGGACC+AGG - chr4.2:1224573-1224592 None:intergenic 50.0%
CTCTGCAGCTGCTTATGGTT+TGG + chr4.2:1225500-1225519 MS.gene62672:CDS 50.0%
GGCACATGAATATGGACCTG+TGG + chr4.2:1223882-1223901 MS.gene62672:CDS 50.0%
TATGCTGGCAAGAGTGGGAT+TGG + chr4.2:1224069-1224088 MS.gene62672:intron 50.0%
TCTTCCATCGTTCTCACTGC+CGG + chr4.2:1223504-1223523 MS.gene62672:CDS 50.0%
TGGCACGCATGACCAAAGTT+TGG - chr4.2:1224173-1224192 None:intergenic 50.0%
! GGCTCTGTTTCTCAGGTTCA+AGG - chr4.2:1223356-1223375 None:intergenic 50.0%
! GGCTGTTCTTGTTTCAGTGG+TGG + chr4.2:1225374-1225393 MS.gene62672:CDS 50.0%
!! ACTCCTGATAGGCTTGTTGC+CGG - chr4.2:1225448-1225467 None:intergenic 50.0%
!! ACTGAAAAGCACTTCACCGC+CGG + chr4.2:1223390-1223409 MS.gene62672:CDS 50.0%
!! CAAGCCTATCAGGAGTGCTT+TGG + chr4.2:1225452-1225471 MS.gene62672:CDS 50.0%
!! CGGTGAAGTGCTTTTCAGTG+TGG - chr4.2:1223389-1223408 None:intergenic 50.0%
ATGTTACCCTCCGAGACCCA+TGG - chr4.2:1223559-1223578 None:intergenic 55.0%
GATGTCACGGACGATCTCAC+CGG - chr4.2:1223412-1223431 None:intergenic 55.0%
TCACCGGCAACAAGCCTATC+AGG + chr4.2:1225442-1225461 MS.gene62672:CDS 55.0%
TGGCATGGCAGGTTTGAGCT+GGG + chr4.2:1225234-1225253 MS.gene62672:intron 55.0%
TTGGCATGGCAGGTTTGAGC+TGG + chr4.2:1225233-1225252 MS.gene62672:intron 55.0%
CCATCTCCATGGGTCTCGGA+GGG + chr4.2:1223550-1223569 MS.gene62672:CDS 60.0%
GATGCCGGCAGTGAGAACGA+TGG - chr4.2:1223511-1223530 None:intergenic 60.0%
!! AGCATTGGCGCCAGAGAGAC+CGG - chr4.2:1223481-1223500 None:intergenic 60.0%
ATTGGCGCCAGAGAGACCGG+CGG - chr4.2:1223478-1223497 None:intergenic 65.0%
CCCTCCGAGACCCATGGAGA+TGG - chr4.2:1223553-1223572 None:intergenic 65.0%
GAGACCCATGGAGATGGCGC+CGG - chr4.2:1223547-1223566 None:intergenic 65.0%
GCCATCTCCATGGGTCTCGG+AGG + chr4.2:1223549-1223568 MS.gene62672:CDS 65.0%
GGCGCCATCTCCATGGGTCT+CGG + chr4.2:1223546-1223565 MS.gene62672:CDS 65.0%
GTCACGGACGATCTCACCGG+CGG - chr4.2:1223409-1223428 None:intergenic 65.0%
GGCGGCGAGGGCGAAAGGAA+CGG - chr4.2:1223460-1223479 None:intergenic 70.0%
GTTCCTTTCGCCCTCGCCGC+CGG + chr4.2:1223459-1223478 MS.gene62672:CDS 70.0%
! ACCCATGGAGATGGCGCCGG+CGG - chr4.2:1223544-1223563 None:intergenic 70.0%
AGACCGGCGGCGAGGGCGAA+AGG - chr4.2:1223465-1223484 None:intergenic 75.0%
GCCAGAGAGACCGGCGGCGA+GGG - chr4.2:1223472-1223491 None:intergenic 75.0%
GCCGCCGGCGCCATCTCCAT+GGG + chr4.2:1223540-1223559 MS.gene62672:CDS 75.0%
GGCATCGCCGAAGTCGCCGC+CGG + chr4.2:1223525-1223544 MS.gene62672:CDS 75.0%
GGCGGCGACTTCGGCGATGC+CGG - chr4.2:1223526-1223545 None:intergenic 75.0%
!! GATGGCGCCGGCGGCGACTT+CGG - chr4.2:1223535-1223554 None:intergenic 75.0%
! CGCCAGAGAGACCGGCGGCG+AGG - chr4.2:1223473-1223492 None:intergenic 80.0%
! CGCCGCCGGCGCCATCTCCA+TGG + chr4.2:1223539-1223558 MS.gene62672:CDS 80.0%
! GCCCTCGCCGCCGGTCTCTC+TGG + chr4.2:1223468-1223487 MS.gene62672:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 1223321 1225542 1223321 ID=MS.gene62672
chr4.2 mRNA 1223321 1225542 1223321 ID=MS.gene62672.t1;Parent=MS.gene62672
chr4.2 exon 1223321 1223571 1223321 ID=MS.gene62672.t1.exon1;Parent=MS.gene62672.t1
chr4.2 CDS 1223321 1223571 1223321 ID=cds.MS.gene62672.t1;Parent=MS.gene62672.t1
chr4.2 exon 1223669 1223754 1223669 ID=MS.gene62672.t1.exon2;Parent=MS.gene62672.t1
chr4.2 CDS 1223669 1223754 1223669 ID=cds.MS.gene62672.t1;Parent=MS.gene62672.t1
chr4.2 exon 1223839 1223953 1223839 ID=MS.gene62672.t1.exon3;Parent=MS.gene62672.t1
chr4.2 CDS 1223839 1223953 1223839 ID=cds.MS.gene62672.t1;Parent=MS.gene62672.t1
chr4.2 exon 1225245 1225542 1225245 ID=MS.gene62672.t1.exon4;Parent=MS.gene62672.t1
chr4.2 CDS 1225245 1225542 1225245 ID=cds.MS.gene62672.t1;Parent=MS.gene62672.t1
Gene Sequence

>MS.gene62672

ATGGCTGGTAATGGCGACGAACACAGACTAAACCTTGAACCTGAGAAACAGAGCCTTCTCAATCGCCACACTGAAAAGCACTTCACCGCCGGTGAGATCGTCCGTGACATCATCATCGGCGTTTCTGATGGACTCACCGTTCCTTTCGCCCTCGCCGCCGGTCTCTCTGGCGCCAATGCTACTTCTTCCATCGTTCTCACTGCCGGCATCGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGTCTCGGAGGGTAACATTCTTTCTTTACACACTCAATTTTGATCACATTTTTTTATTATCATGAATTGATTTCAAGAAACGTTGCACTATGTTGTGTTGTCGTGAAGGTATTTGGCAGCAAAAGGTGAAGCTGATCATTACAATAGAGAATTGAAAAGGGAACAAGAAGAAATCGTTACAGTACCAGAAACTGGTTCGTATCGTAATCTTTTATTTTATTTATTCTAAAAAATGGTTTTCGATTTTTTTTTTATTTGATTTTTATATATTATTTCAGAAGCTGCTGAGGTGGCAGAAATATTGGCTGAGTATGGAATAGAGGCACATGAATATGGACCTGTGGTGAATGCTCTGAGAAAGAATCCTCAAGCATGGCTTGATTTCATGATGAAGTAAGTTTCATTTTAATTTTTGTAATTTTTGTTGAGTTAATACTACGCATGAGAAAGTAATTTGTCCAAAATTTGGAGTTTGCAATGCGTGTCGTTATTTGTTGAATGTTAGTTATATGCTGGCAAGAGTGGGATTGGAAAGAGAAAGGCACTTTTTCTGGTTGTGGGTTTCCACTTTTTCAGTGTGGACATGCTTTGATACTTTGATTTCAGATTCCAAACTTTGGTCATGCGTGCCACAGTACACCGATACTATTTGGTTTGGACTCTCTTTTTGTTTTTTAGTACGTCTGTATTTAAAAATAAAGAAATTAATCAAATATACTCCACACAACTTTAAATTAACATCTTCAAATCTTGTGATATTCAAATGAGCCGAAAACTTTTTCTATAAATTTAAACATTGTTTTCTAAATTTGAGTTTCAATTTTGATTTAAGTTAAAAGAAATTTGTGTGAAGATAAAATAGGTAAACAAGGTTTAAAATCCTCAATTTCAATTTTTATCATAACCATTTTTTTTTTATTCCAAACCATTGTATTGTAGAATCAATGTTTTTTGTTGTTGAAAAACTAAGAATAATTAGCTCAAATTATTTTAATATTAAGCATATGCTCCTGGTCCATGAAATGCAAACGGATAAAAACATGATAAATGAATTATCCTAGAGAACCTTACACGTGGGTTTCTTTTATAATTATTTTTTTGTACAGCTAGTTAGGATGAATAAATGATCATGTGCAGGTACAATGTTAATATTGTTATGCTTCTATAAGTAAATAAATATCTCTGGTCTTGGTTTGGTTAAACTTGTGCCTAAAAAACGTTTTTCAAAACAAAAATATTGTGATGCATACAAATATGTTACAATGTTTCTGACTTGAATTTGAATTATTAAAATAAGATTGATATGGTTTACTTTAGAAATCAAATTAGAGGTAGAGATTTACTGGTGGATGTAGAGAACAGAACGACCTTTTTTTAATACTATGAAGAAAAGTTTTGAAACCATGAATCCAACTTATATTCATCCACCTTTATATGGTTTCTACATGCATCTTTCATAATTTGAATTACTTGCTACAATCAAATATGACTCTAAATAGTAAATGCTTGAAAAAATAAACAAATTGATGCAATCCAATTTTATATACATGCACCTTTTTATTGTTTCTAGAATACCTGCTTCCTTAAAAACGTGAATTAATTTCTACAATGGAAGATAACTTTGTGAATTTGTGAGTGATTGATTGAACAAATTAATTAACAAATTGGTTACTTGGCATGGCAGGTTTGAGCTGGGACTAGAGAAGCCAGATCCAAGAAGAGCATTGTATAGTGCAATGACAATTGCTATTGCTTACGTATTGGGTGGAATTGTTCCTCTCATTCCTTACATGTTCATTCCTAATGCATCAGAGGCTGTTCTTGTTTCAGTGGTGGTTACATTGATTGCTTTGCTTATCTTTGGCTTTGTCAAGGGATGCTTCACCGGCAACAAGCCTATCAGGAGTGCTTTGGAAACTGCTCTAATTGGTGCCATTGCCTCTGCAGCTGCTTATGGTTTGGCAAAGGCTTTCCATCCATAG
Protein sequence

>MS.gene62672.t1

MAGNGDEHRLNLEPEKQSLLNRHTEKHFTAGEIVRDIIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKGEADHYNRELKREQEEIVTVPETEAAEVAEILAEYGIEAHEYGPVVNALRKNPQAWLDFMMKFELGLEKPDPRRALYSAMTIAIAYVLGGIVPLIPYMFIPNASEAVLVSVVVTLIALLIFGFVKGCFTGNKPIRSALETALIGAIASAAAYGLAKAFHP