Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058588.t1 | XP_003630980.1 | 99.2 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 6.70E-127 | 463.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058588.t1 | Q9ZUA5 | 83.1 | 237 | 40 | 0 | 9 | 245 | 10 | 246 | 1.5e-103 | 377.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058588.t1 | G7LBG9 | 99.2 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 4.8e-127 | 463.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052379 | MS.gene058588 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene058588 | 0.802543 | 5.34E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene058588 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene060818 | 0.81263 | 3.85E-51 | -1.69E-46 |
| MS.gene058588 | MS.gene062145 | 0.817029 | 4.08E-52 | -1.69E-46 |
| MS.gene058588 | MS.gene06332 | 0.803124 | 4.05E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene063518 | 0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene065204 | 0.801748 | 7.78E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene065816 | 0.802239 | 6.17E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene067922 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene07438 | 0.807326 | 5.34E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene23332 | 0.810332 | 1.21E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene23417 | 0.81044 | 1.15E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene33594 | 0.810241 | 1.27E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene34429 | 0.814796 | 1.28E-51 | -1.69E-46 |
| MS.gene058588 | MS.gene35546 | -0.809292 | 2.03E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene36506 | 0.804324 | 2.28E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene40958 | 0.804289 | 2.32E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene45747 | 0.811423 | 7.05E-51 | -1.69E-46 |
| MS.gene058588 | MS.gene47784 | 0.801399 | 9.17E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene48989 | -0.805806 | 1.12E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene49365 | 0.809986 | 1.44E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene49716 | 0.808387 | 3.17E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene50561 | 0.841981 | 3.42E-58 | -1.69E-46 |
| MS.gene058588 | MS.gene50727 | 0.811999 | 5.29E-51 | -1.69E-46 |
| MS.gene058588 | MS.gene62672 | 0.970447 | 1.25E-131 | -1.69E-46 |
| MS.gene058588 | MS.gene66627 | 0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene058588 | MS.gene70171 | 0.817584 | 3.06E-52 | -1.69E-46 |
| MS.gene058588 | MS.gene70417 | 0.813773 | 2.16E-51 | -1.69E-46 |
| MS.gene058588 | MS.gene71078 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene75780 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene058588 | MS.gene76628 | 0.824047 | 9.97E-54 | -1.69E-46 |
| MS.gene058588 | MS.gene78602 | 0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene058588 | MS.gene85923 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene91157 | 0.805661 | 1.20E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene91158 | 0.800793 | 1.22E-48 | -1.69E-46 |
| MS.gene058588 | MS.gene95837 | 0.972282 | 1.64E-134 | -1.69E-46 |
| MS.gene058588 | MS.gene98170 | 0.802236 | 6.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058588.t1 | MTR_8g105790 | 99.197 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 4.90e-179 | 491 |
| MS.gene058588.t1 | MTR_8g105810 | 86.800 | 250 | 32 | 1 | 1 | 249 | 1 | 250 | 1.65e-157 | 437 |
| MS.gene058588.t1 | MTR_7g076320 | 26.613 | 248 | 175 | 3 | 1 | 241 | 3 | 250 | 2.96e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058588.t1 | AT2G01770 | 83.122 | 237 | 40 | 0 | 9 | 245 | 10 | 246 | 3.95e-144 | 403 |
Find 78 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCTCTGCAGCTGCTTA+TGG | 0.219518 | 4.4:-1488423 | MS.gene058588:CDS |
| GCACTATACAATGCTCTTCT+TGG | 0.231503 | 4.4:+1488645 | None:intergenic |
| TTGATTGCTTTGCTTATCTT+TGG | 0.233804 | 4.4:-1488516 | MS.gene058588:CDS |
| TTACGATACGAACCAGTTTC+TGG | 0.248340 | 4.4:+1490165 | None:intergenic |
| ATTGCTATTGCTTACGTATT+GGG | 0.289589 | 4.4:-1488615 | MS.gene058588:CDS |
| GCTTTGGAAACTGCTCTAAT+TGG | 0.299231 | 4.4:-1488450 | MS.gene058588:CDS |
| CTCTGCAGCTGCTTATGGTT+TGG | 0.327872 | 4.4:-1488418 | MS.gene058588:CDS |
| TCACCGGCAACAAGCCTATC+AGG | 0.353963 | 4.4:-1488476 | MS.gene058588:CDS |
| GGAATAGAGGCACATGAATA+TGG | 0.366935 | 4.4:-1490036 | MS.gene058588:CDS |
| TGCTGAGGTGGCAGAAATAT+TGG | 0.367269 | 4.4:-1490067 | MS.gene058588:CDS |
| GTTTCCAAAGCACTCCTGAT+AGG | 0.367638 | 4.4:+1488462 | None:intergenic |
| TTGGCATGGCAGGTTTGAGC+TGG | 0.371854 | 4.4:-1488685 | MS.gene058588:intron |
| GCAGAAATATTGGCTGAGTA+TGG | 0.383074 | 4.4:-1490057 | MS.gene058588:CDS |
| TACAATGCTCTTCTTGGATC+TGG | 0.387148 | 4.4:+1488651 | None:intergenic |
| GGCGGCGACTTCGGCGATGC+CGG | 0.389084 | 4.4:+1490387 | None:intergenic |
| GCCCTCGCCGCCGGTCTCTC+TGG | 0.390424 | 4.4:-1490442 | MS.gene058588:CDS |
| CGCCGCCGGCGCCATCTCCA+TGG | 0.394416 | 4.4:-1490371 | MS.gene058588:CDS |
| GGCTCTGTTTCTCAGGTTCA+AGG | 0.398656 | 4.4:+1490557 | None:intergenic |
| TTGAGAAGGCTCTGTTTCTC+AGG | 0.409645 | 4.4:+1490550 | None:intergenic |
| TGTGTTGTCGTGAAGGTATT+TGG | 0.412813 | 4.4:-1490256 | MS.gene058588:intron |
| GGCGCCATCTCCATGGGTCT+CGG | 0.413142 | 4.4:-1490364 | MS.gene058588:CDS |
| AGAACAGCCTCTGATGCATT+AGG | 0.414520 | 4.4:+1488558 | None:intergenic |
| GGCATCGCCGAAGTCGCCGC+CGG | 0.418402 | 4.4:-1490385 | MS.gene058588:CDS |
| GATGGCGCCGGCGGCGACTT+CGG | 0.423405 | 4.4:+1490378 | None:intergenic |
| ATCGTTACAGTACCAGAAAC+TGG | 0.426709 | 4.4:-1490177 | MS.gene058588:intron |
| AGACCGGCGGCGAGGGCGAA+AGG | 0.430567 | 4.4:+1490448 | None:intergenic |
| AATTGCTATTGCTTACGTAT+TGG | 0.433881 | 4.4:-1488616 | MS.gene058588:CDS |
| ATTACAATAGAGAATTGAAA+AGG | 0.434289 | 4.4:-1490212 | MS.gene058588:CDS |
| ACTCCTGATAGGCTTGTTGC+CGG | 0.441410 | 4.4:+1488473 | None:intergenic |
| GCTTATCTTTGGCTTTGTCA+AGG | 0.444850 | 4.4:-1488505 | MS.gene058588:CDS |
| CTTATCTTTGGCTTTGTCAA+GGG | 0.448135 | 4.4:-1488504 | MS.gene058588:CDS |
| TTTGTCAAGGGATGCTTCAC+CGG | 0.449841 | 4.4:-1488492 | MS.gene058588:CDS |
| CAAGCCTATCAGGAGTGCTT+TGG | 0.453512 | 4.4:-1488466 | MS.gene058588:CDS |
| GTTCCTTTCGCCCTCGCCGC+CGG | 0.459488 | 4.4:-1490451 | MS.gene058588:CDS |
| AGCATTGGCGCCAGAGAGAC+CGG | 0.471916 | 4.4:+1490432 | None:intergenic |
| GCCAGAGAGACCGGCGGCGA+GGG | 0.479185 | 4.4:+1490441 | None:intergenic |
| TCTTCCATCGTTCTCACTGC+CGG | 0.485751 | 4.4:-1490406 | MS.gene058588:CDS |
| GGCTGTTCTTGTTTCAGTGG+TGG | 0.490681 | 4.4:-1488544 | MS.gene058588:CDS |
| ATCATCATCGGCGTTTCTGA+TGG | 0.491623 | 4.4:-1490481 | MS.gene058588:CDS |
| AGCTGCTTATGGTTTGGCAA+AGG | 0.497745 | 4.4:-1488412 | MS.gene058588:CDS |
| CTTGTTCAAATGGCTGGTAA+TGG | 0.501587 | 4.4:-1490598 | None:intergenic |
| TGAAGGTATTTGGCAGCAAA+AGG | 0.504633 | 4.4:-1490246 | MS.gene058588:intron |
| AGAGGCTGTTCTTGTTTCAG+TGG | 0.506618 | 4.4:-1488547 | MS.gene058588:CDS |
| GCCGCCGGCGCCATCTCCAT+GGG | 0.507839 | 4.4:-1490370 | MS.gene058588:CDS |
| ATTGGCTGAGTATGGAATAG+AGG | 0.509860 | 4.4:-1490049 | MS.gene058588:CDS |
| TGGCATGGCAGGTTTGAGCT+GGG | 0.517647 | 4.4:-1488684 | MS.gene058588:intron |
| ACCCATGGAGATGGCGCCGG+CGG | 0.521241 | 4.4:+1490369 | None:intergenic |
| GCATTAGGAATGAACATGTA+AGG | 0.527058 | 4.4:+1488573 | None:intergenic |
| CATACACTTGTTCAAATGGC+TGG | 0.531327 | 4.4:-1490604 | None:intergenic |
| AACGATGGAAGAAGTAGCAT+TGG | 0.541787 | 4.4:+1490417 | None:intergenic |
| TTACAATAGAGAATTGAAAA+GGG | 0.552550 | 4.4:-1490211 | MS.gene058588:CDS |
| TTTCTCAGAGCATTCACCAC+AGG | 0.554204 | 4.4:+1490012 | None:intergenic |
| GGCGGCGAGGGCGAAAGGAA+CGG | 0.558595 | 4.4:+1490453 | None:intergenic |
| ATAAGCAGCTGCAGAGGCAA+TGG | 0.561549 | 4.4:+1488425 | None:intergenic |
| TTTCAGTGTGGCGATTGAGA+AGG | 0.562660 | 4.4:+1490536 | None:intergenic |
| CCCTCCGAGACCCATGGAGA+TGG | 0.565170 | 4.4:+1490360 | None:intergenic |
| CGCCAGAGAGACCGGCGGCG+AGG | 0.570875 | 4.4:+1490440 | None:intergenic |
| TATTTCAGAAGCTGCTGAGG+TGG | 0.571673 | 4.4:-1490079 | MS.gene058588:intron |
| GCTATTGCTTACGTATTGGG+TGG | 0.579839 | 4.4:-1488612 | MS.gene058588:CDS |
| GAGACCCATGGAGATGGCGC+CGG | 0.581337 | 4.4:+1490366 | None:intergenic |
| CCATCTCCATGGGTCTCGGA+GGG | 0.588120 | 4.4:-1490360 | MS.gene058588:intron |
| TATTATTTCAGAAGCTGCTG+AGG | 0.589707 | 4.4:-1490082 | MS.gene058588:intron |
| ACTGAAAAGCACTTCACCGC+CGG | 0.593901 | 4.4:-1490520 | MS.gene058588:CDS |
| GATGTCACGGACGATCTCAC+CGG | 0.594283 | 4.4:+1490501 | None:intergenic |
| ATGAACATGTAAGGAATGAG+AGG | 0.596128 | 4.4:+1488582 | None:intergenic |
| AAAGAGCATGAAACTATGGA+TGG | 0.598379 | 4.4:+1488385 | None:intergenic |
| GTGTTACCCTCCGAGACCCA+TGG | 0.602772 | 4.4:+1490354 | None:intergenic |
| TGAGAAAGAATCCTCAAGCA+TGG | 0.613689 | 4.4:-1489996 | MS.gene058588:CDS |
| GCCATCTCCATGGGTCTCGG+AGG | 0.615331 | 4.4:-1490361 | MS.gene058588:CDS |
| CAAACCATAAGCAGCTGCAG+AGG | 0.616863 | 4.4:+1488419 | None:intergenic |
| GTTCATTCCTAATGCATCAG+AGG | 0.624017 | 4.4:-1488565 | MS.gene058588:CDS |
| ATGAAATCAAGCCATGCTTG+AGG | 0.632968 | 4.4:+1489985 | None:intergenic |
| ATCGTCCGTGACATCATCAT+CGG | 0.638810 | 4.4:-1490493 | MS.gene058588:CDS |
| AAACGCCGATGATGATGTCA+CGG | 0.645259 | 4.4:+1490488 | None:intergenic |
| GTCACGGACGATCTCACCGG+CGG | 0.688191 | 4.4:+1490504 | None:intergenic |
| GGCACATGAATATGGACCTG+TGG | 0.703794 | 4.4:-1490028 | MS.gene058588:CDS |
| ATTGGCGCCAGAGAGACCGG+CGG | 0.726652 | 4.4:+1490435 | None:intergenic |
| GATGCCGGCAGTGAGAACGA+TGG | 0.747818 | 4.4:+1490402 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAAATAAGATTGATA+TGG | - | chr4.4:1489913-1489932 | MS.gene058588:intron | 10.0% |
| !!! | AAATTTATAGAAAAAGTTTT+CGG | + | chr4.4:1489402-1489421 | None:intergenic | 10.0% |
| !! | GAACAAATTAATTAACAAAT+TGG | - | chr4.4:1490275-1490294 | MS.gene058588:intron | 15.0% |
| !! | TATAAGTAAATAAATATCTC+TGG | - | chr4.4:1489792-1489811 | MS.gene058588:intron | 15.0% |
| !! | TATGATAAAAATTGAAATTG+AGG | + | chr4.4:1489514-1489533 | None:intergenic | 15.0% |
| !! | TCTTCATAGTATTAAAAAAA+TGG | + | chr4.4:1489999-1490018 | None:intergenic | 15.0% |
| !! | AATTTGTGTGAAGATAAAAT+AGG | - | chr4.4:1489471-1489490 | MS.gene058588:intron | 20.0% |
| !! | ATTACAATAGAGAATTGAAA+AGG | - | chr4.4:1488775-1488794 | MS.gene058588:intron | 20.0% |
| !! | TAATTAACAAATTGGTTACT+TGG | - | chr4.4:1490283-1490302 | MS.gene058588:intron | 20.0% |
| !! | TTACAATAGAGAATTGAAAA+GGG | - | chr4.4:1488776-1488795 | MS.gene058588:intron | 20.0% |
| !!! | AAAGTAATTTGTCCAAAATT+TGG | - | chr4.4:1489084-1489103 | MS.gene058588:intron | 20.0% |
| !!! | ATGGTTTGGAATAAAAAAAA+TGG | + | chr4.4:1489538-1489557 | None:intergenic | 20.0% |
| !!! | GAAATTAATTCACGTTTTTA+AGG | + | chr4.4:1490214-1490233 | None:intergenic | 20.0% |
| !!! | GTATTCTAGAAACAATAAAA+AGG | + | chr4.4:1490185-1490204 | None:intergenic | 20.0% |
| !!! | TACTTTAGAAATCAAATTAG+AGG | - | chr4.4:1489938-1489957 | MS.gene058588:intron | 20.0% |
| !!! | TGTTTTGAAAAACGTTTTTT+AGG | + | chr4.4:1489840-1489859 | None:intergenic | 20.0% |
| ! | AAGGTGCATGTATATAAAAT+TGG | + | chr4.4:1490166-1490185 | None:intergenic | 25.0% |
| ! | ACGTGAATTAATTTCTACAA+TGG | - | chr4.4:1490219-1490238 | MS.gene058588:CDS | 25.0% |
| ! | ATGTAGAAACAATATAAAGG+TGG | + | chr4.4:1490057-1490076 | None:intergenic | 25.0% |
| ! | GAAGATAAAATAGGTAAACA+AGG | - | chr4.4:1489480-1489499 | MS.gene058588:intron | 25.0% |
| ! | TAAATAAATATCTCTGGTCT+TGG | - | chr4.4:1489798-1489817 | MS.gene058588:intron | 25.0% |
| ! | TAATATTAAGCATATGCTAC+TGG | - | chr4.4:1489620-1489639 | MS.gene058588:intron | 25.0% |
| ! | TGCATGTAGAAACAATATAA+AGG | + | chr4.4:1490060-1490079 | None:intergenic | 25.0% |
| !! | ATGAATATAAGTTGGATTCA+TGG | + | chr4.4:1490034-1490053 | None:intergenic | 25.0% |
| !! | GATGTTAATTTAAAGTTGTG+TGG | + | chr4.4:1489353-1489372 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACAGCTAGTT+AGG | - | chr4.4:1489721-1489740 | MS.gene058588:intron | 25.0% |
| AAAGAGAGTCCAAATAGTAT+CGG | + | chr4.4:1489278-1489297 | None:intergenic | 30.0% | |
| AAAGGTGGATGAATATAAGT+TGG | + | chr4.4:1490042-1490061 | None:intergenic | 30.0% | |
| AATTAGAGGTAGAGATTTAC+TGG | - | chr4.4:1489952-1489971 | MS.gene058588:intron | 30.0% | |
| ATGAATAAATGATCATGTGC+AGG | - | chr4.4:1489744-1489763 | MS.gene058588:intron | 30.0% | |
| GATTCTACAATACAATGGTT+TGG | + | chr4.4:1489552-1489571 | None:intergenic | 30.0% | |
| GTTGAATGTTAGTTATATGC+TGG | - | chr4.4:1489129-1489148 | MS.gene058588:intron | 30.0% | |
| TGATTTCAGATTCCAAACTT+TGG | - | chr4.4:1489233-1489252 | MS.gene058588:intron | 30.0% | |
| TTGATTGCTTTGCTTATCTT+TGG | - | chr4.4:1490471-1490490 | MS.gene058588:CDS | 30.0% | |
| ! | AATTGCTATTGCTTACGTAT+TGG | - | chr4.4:1490371-1490390 | MS.gene058588:CDS | 30.0% |
| ! | ATTGCTATTGCTTACGTATT+GGG | - | chr4.4:1490372-1490391 | MS.gene058588:CDS | 30.0% |
| ! | TTTTATCCGTTTGCATTTCA+TGG | + | chr4.4:1489647-1489666 | None:intergenic | 30.0% |
| !! | ACATCGATTCTACAATACAA+TGG | + | chr4.4:1489557-1489576 | None:intergenic | 30.0% |
| AACAAATTGGTTACTTGGCA+TGG | - | chr4.4:1490288-1490307 | MS.gene058588:intron | 35.0% | |
| ATAAAAGAAACCCACGTGTA+AGG | + | chr4.4:1489697-1489716 | None:intergenic | 35.0% | |
| ATGAACATGTAAGGAATGAG+AGG | + | chr4.4:1490408-1490427 | None:intergenic | 35.0% | |
| GCATTAGGAATGAACATGTA+AGG | + | chr4.4:1490417-1490436 | None:intergenic | 35.0% | |
| TATTATTTCAGAAGCTGCTG+AGG | - | chr4.4:1488905-1488924 | MS.gene058588:intron | 35.0% | |
| ! | GCATTGCAAACTCCAAATTT+TGG | + | chr4.4:1489099-1489118 | None:intergenic | 35.0% |
| !! | AAATATCTCTGGTCTTGGTT+TGG | - | chr4.4:1489803-1489822 | MS.gene058588:intron | 35.0% |
| !! | ATTCACGTTTTTAAGGAAGC+AGG | + | chr4.4:1490207-1490226 | None:intergenic | 35.0% |
| !! | CTTATCTTTGGCTTTGTCAA+GGG | - | chr4.4:1490483-1490502 | MS.gene058588:CDS | 35.0% |
| !!! | AAAGAGAAAGGCACTTTTTC+TGG | - | chr4.4:1489167-1489186 | MS.gene058588:intron | 35.0% |
| AACGATGGAAGAAGTAGCAT+TGG | + | chr4.4:1488573-1488592 | None:intergenic | 40.0% | |
| ACTATGTTGTGTTGTCGTGA+AGG | - | chr4.4:1488724-1488743 | MS.gene058588:intron | 40.0% | |
| ACTGGTCCATGAAATGCAAA+CGG | - | chr4.4:1489638-1489657 | MS.gene058588:intron | 40.0% | |
| AGTTATATGCTGGCAAGAGT+GGG | - | chr4.4:1489139-1489158 | MS.gene058588:intron | 40.0% | |
| ATCGTTACAGTACCAGAAAC+TGG | - | chr4.4:1488810-1488829 | MS.gene058588:intron | 40.0% | |
| ATGAAATCAAGCCATGCTTG+AGG | + | chr4.4:1489005-1489024 | None:intergenic | 40.0% | |
| ATTGGCTGAGTATGGAATAG+AGG | - | chr4.4:1488938-1488957 | MS.gene058588:intron | 40.0% | |
| GCACTATACAATGCTCTTCT+TGG | + | chr4.4:1490345-1490364 | None:intergenic | 40.0% | |
| GTTCATTCCTAATGCATCAG+AGG | - | chr4.4:1490422-1490441 | MS.gene058588:CDS | 40.0% | |
| TACAATGCTCTTCTTGGATC+TGG | + | chr4.4:1490339-1490358 | None:intergenic | 40.0% | |
| TAGAGGTAGAGATTTACTGG+TGG | - | chr4.4:1489955-1489974 | MS.gene058588:intron | 40.0% | |
| TAGTTATATGCTGGCAAGAG+TGG | - | chr4.4:1489138-1489157 | MS.gene058588:intron | 40.0% | |
| TGAGAAAGAATCCTCAAGCA+TGG | - | chr4.4:1488991-1489010 | MS.gene058588:intron | 40.0% | |
| TTACGATACGAACCAGTTTC+TGG | + | chr4.4:1488825-1488844 | None:intergenic | 40.0% | |
| ! | GCAGAAATATTGGCTGAGTA+TGG | - | chr4.4:1488930-1488949 | MS.gene058588:intron | 40.0% |
| ! | GGAATAGAGGCACATGAATA+TGG | - | chr4.4:1488951-1488970 | MS.gene058588:intron | 40.0% |
| !! | GCTTATCTTTGGCTTTGTCA+AGG | - | chr4.4:1490482-1490501 | MS.gene058588:CDS | 40.0% |
| !! | GCTTTGGAAACTGCTCTAAT+TGG | - | chr4.4:1490537-1490556 | MS.gene058588:CDS | 40.0% |
| !! | TGAAGGTATTTGGCAGCAAA+AGG | - | chr4.4:1488741-1488760 | MS.gene058588:intron | 40.0% |
| !! | TGTGTTGTCGTGAAGGTATT+TGG | - | chr4.4:1488731-1488750 | MS.gene058588:intron | 40.0% |
| !!! | AAAGGCACTTTTTCTGGTTG+TGG | - | chr4.4:1489173-1489192 | MS.gene058588:intron | 40.0% |
| !!! | AAGGCACTTTTTCTGGTTGT+GGG | - | chr4.4:1489174-1489193 | MS.gene058588:intron | 40.0% |
| AATTGGTTACTTGGCATGGC+AGG | - | chr4.4:1490292-1490311 | MS.gene058588:intron | 45.0% | |
| AGAACAGCCTCTGATGCATT+AGG | + | chr4.4:1490432-1490451 | None:intergenic | 45.0% | |
| ATCATCATCGGCGTTTCTGA+TGG | - | chr4.4:1488506-1488525 | MS.gene058588:CDS | 45.0% | |
| ATCCTAGAGAACCTTACACG+TGG | - | chr4.4:1489683-1489702 | MS.gene058588:intron | 45.0% | |
| ATCGTCCGTGACATCATCAT+CGG | - | chr4.4:1488494-1488513 | MS.gene058588:CDS | 45.0% | |
| CACAGTCCACCGATACTATT+TGG | - | chr4.4:1489266-1489285 | MS.gene058588:intron | 45.0% | |
| GAGTGGGATTGGAAAGAGAA+AGG | - | chr4.4:1489155-1489174 | MS.gene058588:intron | 45.0% | |
| GCATGTCCACACTGAAAAAG+TGG | + | chr4.4:1489203-1489222 | None:intergenic | 45.0% | |
| GCTATTGCTTACGTATTGGG+TGG | - | chr4.4:1490375-1490394 | MS.gene058588:CDS | 45.0% | |
| TATTTCAGAAGCTGCTGAGG+TGG | - | chr4.4:1488908-1488927 | MS.gene058588:intron | 45.0% | |
| TCCTAGAGAACCTTACACGT+GGG | - | chr4.4:1489684-1489703 | MS.gene058588:intron | 45.0% | |
| TGCTGAGGTGGCAGAAATAT+TGG | - | chr4.4:1488920-1488939 | MS.gene058588:intron | 45.0% | |
| TTTCAGTGTGGCGATTGAGA+AGG | + | chr4.4:1488454-1488473 | None:intergenic | 45.0% | |
| TTTGTCAAGGGATGCTTCAC+CGG | - | chr4.4:1490495-1490514 | MS.gene058588:CDS | 45.0% | |
| ! | AAACGCCGATGATGATGTCA+CGG | + | chr4.4:1488502-1488521 | None:intergenic | 45.0% |
| ! | AGAGGCTGTTCTTGTTTCAG+TGG | - | chr4.4:1490440-1490459 | MS.gene058588:CDS | 45.0% |
| ! | AGCTGCTTATGGTTTGGCAA+AGG | - | chr4.4:1490575-1490594 | MS.gene058588:CDS | 45.0% |
| ! | GAGAGTCCAAATAGTATCGG+TGG | + | chr4.4:1489275-1489294 | None:intergenic | 45.0% |
| ! | GTTTCCAAAGCACTCCTGAT+AGG | + | chr4.4:1490528-1490547 | None:intergenic | 45.0% |
| ! | TTGAGAAGGCTCTGTTTCTC+AGG | + | chr4.4:1488440-1488459 | None:intergenic | 45.0% |
| ! | TTTCTCAGAGCATTCACCAC+AGG | + | chr4.4:1488978-1488997 | None:intergenic | 45.0% |
| !! | CAAATAGTATCGGTGGACTG+TGG | + | chr4.4:1489268-1489287 | None:intergenic | 45.0% |
| !!! | GGGTTTCCACTTTTTCAGTG+TGG | - | chr4.4:1489194-1489213 | MS.gene058588:intron | 45.0% |
| !!! | ATTTTATTTATTCTAAAAAA+TGG | - | chr4.4:1488851-1488870 | MS.gene058588:intron | 5.0% |
| ACCCACGTGTAAGGTTCTCT+AGG | + | chr4.4:1489688-1489707 | None:intergenic | 50.0% | |
| ATAAGCAGCTGCAGAGGCAA+TGG | + | chr4.4:1490565-1490584 | None:intergenic | 50.0% | |
| ATTGCCTCTGCAGCTGCTTA+TGG | - | chr4.4:1490564-1490583 | MS.gene058588:CDS | 50.0% | |
| CAAACCATAAGCAGCTGCAG+AGG | + | chr4.4:1490571-1490590 | None:intergenic | 50.0% | |
| CTCTGCAGCTGCTTATGGTT+TGG | - | chr4.4:1490569-1490588 | MS.gene058588:CDS | 50.0% | |
| GGCACATGAATATGGACCTG+TGG | - | chr4.4:1488959-1488978 | MS.gene058588:intron | 50.0% | |
| TATGCTGGCAAGAGTGGGAT+TGG | - | chr4.4:1489144-1489163 | MS.gene058588:intron | 50.0% | |
| TCTTCCATCGTTCTCACTGC+CGG | - | chr4.4:1488581-1488600 | MS.gene058588:CDS | 50.0% | |
| TGGCACGCATGACCAAAGTT+TGG | + | chr4.4:1489248-1489267 | None:intergenic | 50.0% | |
| ! | GGCTCTGTTTCTCAGGTTCA+AGG | + | chr4.4:1488433-1488452 | None:intergenic | 50.0% |
| ! | GGCTGTTCTTGTTTCAGTGG+TGG | - | chr4.4:1490443-1490462 | MS.gene058588:CDS | 50.0% |
| !! | ACTCCTGATAGGCTTGTTGC+CGG | + | chr4.4:1490517-1490536 | None:intergenic | 50.0% |
| !! | ACTGAAAAGCACTTCACCGC+CGG | - | chr4.4:1488467-1488486 | MS.gene058588:CDS | 50.0% |
| !! | CAAGCCTATCAGGAGTGCTT+TGG | - | chr4.4:1490521-1490540 | MS.gene058588:CDS | 50.0% |
| !! | CGGTGAAGTGCTTTTCAGTG+TGG | + | chr4.4:1488466-1488485 | None:intergenic | 50.0% |
| GATGTCACGGACGATCTCAC+CGG | + | chr4.4:1488489-1488508 | None:intergenic | 55.0% | |
| TCACCGGCAACAAGCCTATC+AGG | - | chr4.4:1490511-1490530 | MS.gene058588:CDS | 55.0% | |
| TGGCATGGCAGGTTTGAGCT+GGG | - | chr4.4:1490303-1490322 | MS.gene058588:intron | 55.0% | |
| TTGGCATGGCAGGTTTGAGC+TGG | - | chr4.4:1490302-1490321 | MS.gene058588:intron | 55.0% | |
| CCATCTCCATGGGTCTCGGA+GGG | - | chr4.4:1488627-1488646 | MS.gene058588:CDS | 60.0% | |
| GATGCCGGCAGTGAGAACGA+TGG | + | chr4.4:1488588-1488607 | None:intergenic | 60.0% | |
| GTGTTACCCTCCGAGACCCA+TGG | + | chr4.4:1488636-1488655 | None:intergenic | 60.0% | |
| !! | AGCATTGGCGCCAGAGAGAC+CGG | + | chr4.4:1488558-1488577 | None:intergenic | 60.0% |
| ATTGGCGCCAGAGAGACCGG+CGG | + | chr4.4:1488555-1488574 | None:intergenic | 65.0% | |
| CCCTCCGAGACCCATGGAGA+TGG | + | chr4.4:1488630-1488649 | None:intergenic | 65.0% | |
| GAGACCCATGGAGATGGCGC+CGG | + | chr4.4:1488624-1488643 | None:intergenic | 65.0% | |
| GCCATCTCCATGGGTCTCGG+AGG | - | chr4.4:1488626-1488645 | MS.gene058588:CDS | 65.0% | |
| GGCGCCATCTCCATGGGTCT+CGG | - | chr4.4:1488623-1488642 | MS.gene058588:CDS | 65.0% | |
| GTCACGGACGATCTCACCGG+CGG | + | chr4.4:1488486-1488505 | None:intergenic | 65.0% | |
| GGCGGCGAGGGCGAAAGGAA+CGG | + | chr4.4:1488537-1488556 | None:intergenic | 70.0% | |
| GTTCCTTTCGCCCTCGCCGC+CGG | - | chr4.4:1488536-1488555 | MS.gene058588:CDS | 70.0% | |
| ! | ACCCATGGAGATGGCGCCGG+CGG | + | chr4.4:1488621-1488640 | None:intergenic | 70.0% |
| AGACCGGCGGCGAGGGCGAA+AGG | + | chr4.4:1488542-1488561 | None:intergenic | 75.0% | |
| GCCAGAGAGACCGGCGGCGA+GGG | + | chr4.4:1488549-1488568 | None:intergenic | 75.0% | |
| GCCGCCGGCGCCATCTCCAT+GGG | - | chr4.4:1488617-1488636 | MS.gene058588:CDS | 75.0% | |
| GGCATCGCCGAAGTCGCCGC+CGG | - | chr4.4:1488602-1488621 | MS.gene058588:CDS | 75.0% | |
| GGCGGCGACTTCGGCGATGC+CGG | + | chr4.4:1488603-1488622 | None:intergenic | 75.0% | |
| !! | GATGGCGCCGGCGGCGACTT+CGG | + | chr4.4:1488612-1488631 | None:intergenic | 75.0% |
| ! | CGCCAGAGAGACCGGCGGCG+AGG | + | chr4.4:1488550-1488569 | None:intergenic | 80.0% |
| ! | CGCCGCCGGCGCCATCTCCA+TGG | - | chr4.4:1488616-1488635 | MS.gene058588:CDS | 80.0% |
| ! | GCCCTCGCCGCCGGTCTCTC+TGG | - | chr4.4:1488545-1488564 | MS.gene058588:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1488398 | 1490611 | 1488398 | ID=MS.gene058588 |
| chr4.4 | mRNA | 1488398 | 1490611 | 1488398 | ID=MS.gene058588.t1;Parent=MS.gene058588 |
| chr4.4 | exon | 1490361 | 1490611 | 1490361 | ID=MS.gene058588.t1.exon1;Parent=MS.gene058588.t1 |
| chr4.4 | CDS | 1490361 | 1490611 | 1490361 | ID=cds.MS.gene058588.t1;Parent=MS.gene058588.t1 |
| chr4.4 | exon | 1490178 | 1490263 | 1490178 | ID=MS.gene058588.t1.exon2;Parent=MS.gene058588.t1 |
| chr4.4 | CDS | 1490178 | 1490263 | 1490178 | ID=cds.MS.gene058588.t1;Parent=MS.gene058588.t1 |
| chr4.4 | exon | 1489979 | 1490093 | 1489979 | ID=MS.gene058588.t1.exon3;Parent=MS.gene058588.t1 |
| chr4.4 | CDS | 1489979 | 1490093 | 1489979 | ID=cds.MS.gene058588.t1;Parent=MS.gene058588.t1 |
| chr4.4 | exon | 1488398 | 1488695 | 1488398 | ID=MS.gene058588.t1.exon4;Parent=MS.gene058588.t1 |
| chr4.4 | CDS | 1488398 | 1488695 | 1488398 | ID=cds.MS.gene058588.t1;Parent=MS.gene058588.t1 |
| Gene Sequence |
| Protein sequence |
