Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62743.t1 | XP_013448135.1 | 87.8 | 172 | 21 | 0 | 1 | 172 | 1 | 172 | 1.90E-80 | 308.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62743.t1 | Q8L8Q3 | 84.1 | 113 | 18 | 0 | 5 | 117 | 33 | 145 | 3.6e-51 | 202.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62743.t1 | A0A072TXJ1 | 87.8 | 172 | 21 | 0 | 1 | 172 | 1 | 172 | 1.4e-80 | 308.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene62743.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056422 | MS.gene62743 | 0.80461 | 1.99E-49 | -1.69E-46 |
MS.gene060401 | MS.gene62743 | 0.824676 | 7.10E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62743.t1 | MTR_7g033800 | 96.512 | 172 | 6 | 0 | 1 | 172 | 1 | 172 | 5.97e-126 | 351 |
MS.gene62743.t1 | MTR_6g005070 | 87.273 | 110 | 14 | 0 | 4 | 113 | 2 | 111 | 1.19e-68 | 205 |
MS.gene62743.t1 | MTR_3g077240 | 85.217 | 115 | 16 | 1 | 1 | 115 | 1 | 114 | 1.33e-68 | 207 |
MS.gene62743.t1 | MTR_4g105170 | 63.953 | 172 | 47 | 3 | 1 | 157 | 1 | 172 | 5.68e-68 | 205 |
MS.gene62743.t1 | MTR_6g005080 | 84.821 | 112 | 17 | 0 | 4 | 115 | 3 | 114 | 1.29e-67 | 202 |
MS.gene62743.t1 | MTR_5g083230 | 53.020 | 149 | 66 | 1 | 9 | 157 | 4 | 148 | 2.97e-50 | 159 |
MS.gene62743.t1 | MTR_8g040900 | 71.560 | 109 | 31 | 0 | 6 | 114 | 2 | 110 | 4.39e-50 | 161 |
MS.gene62743.t1 | MTR_5g017950 | 66.364 | 110 | 37 | 0 | 5 | 114 | 2 | 111 | 2.52e-49 | 162 |
MS.gene62743.t1 | MTR_3g073690 | 66.667 | 111 | 37 | 0 | 5 | 115 | 3 | 113 | 1.66e-48 | 156 |
MS.gene62743.t1 | MTR_5g083010 | 50.000 | 150 | 69 | 1 | 8 | 157 | 8 | 151 | 6.01e-48 | 154 |
MS.gene62743.t1 | MTR_4g083680 | 64.078 | 103 | 37 | 0 | 10 | 112 | 14 | 116 | 3.77e-47 | 152 |
MS.gene62743.t1 | MTR_2g068760 | 63.107 | 103 | 38 | 0 | 10 | 112 | 12 | 114 | 8.20e-47 | 150 |
MS.gene62743.t1 | MTR_3g452660 | 67.290 | 107 | 35 | 0 | 8 | 114 | 4 | 110 | 1.60e-46 | 154 |
MS.gene62743.t1 | MTR_3g071590 | 59.829 | 117 | 43 | 1 | 8 | 124 | 5 | 117 | 6.94e-46 | 148 |
MS.gene62743.t1 | MTR_3g031660 | 55.000 | 120 | 50 | 1 | 9 | 128 | 5 | 120 | 2.32e-45 | 147 |
MS.gene62743.t1 | MTR_3g071420 | 67.010 | 97 | 32 | 0 | 8 | 104 | 11 | 107 | 3.91e-45 | 147 |
MS.gene62743.t1 | MTR_5g083960 | 59.821 | 112 | 45 | 0 | 3 | 114 | 31 | 142 | 2.70e-44 | 145 |
MS.gene62743.t1 | MTR_3g094690 | 61.905 | 105 | 40 | 0 | 10 | 114 | 46 | 150 | 4.73e-44 | 145 |
MS.gene62743.t1 | MTR_2g093310 | 59.223 | 103 | 42 | 0 | 10 | 112 | 32 | 134 | 1.03e-41 | 139 |
MS.gene62743.t1 | MTR_3g094690 | 60.952 | 105 | 40 | 1 | 10 | 114 | 46 | 149 | 1.75e-41 | 139 |
MS.gene62743.t1 | MTR_7g096530 | 60.000 | 115 | 42 | 2 | 1 | 111 | 1 | 115 | 1.66e-40 | 136 |
MS.gene62743.t1 | MTR_4g060950 | 54.464 | 112 | 50 | 1 | 2 | 112 | 15 | 126 | 1.91e-40 | 135 |
MS.gene62743.t1 | MTR_5g075020 | 63.810 | 105 | 38 | 0 | 10 | 114 | 42 | 146 | 1.46e-39 | 134 |
MS.gene62743.t1 | MTR_5g075020 | 63.810 | 105 | 38 | 0 | 10 | 114 | 46 | 150 | 2.29e-39 | 134 |
MS.gene62743.t1 | MTR_8g036085 | 59.048 | 105 | 42 | 1 | 11 | 114 | 23 | 127 | 9.12e-39 | 132 |
MS.gene62743.t1 | MTR_1g095850 | 49.219 | 128 | 51 | 2 | 12 | 125 | 73 | 200 | 1.49e-38 | 131 |
MS.gene62743.t1 | MTR_1g070220 | 57.265 | 117 | 45 | 2 | 1 | 112 | 1 | 117 | 2.97e-38 | 130 |
MS.gene62743.t1 | MTR_8g036105 | 59.804 | 102 | 40 | 1 | 11 | 111 | 18 | 119 | 1.22e-35 | 124 |
MS.gene62743.t1 | MTR_7g074990 | 61.053 | 95 | 36 | 1 | 11 | 104 | 20 | 114 | 2.77e-35 | 123 |
MS.gene62743.t1 | MTR_7g028905 | 50.980 | 102 | 50 | 0 | 10 | 111 | 4 | 105 | 1.44e-34 | 118 |
MS.gene62743.t1 | MTR_5g080470 | 55.670 | 97 | 42 | 1 | 10 | 105 | 6 | 102 | 1.06e-33 | 118 |
MS.gene62743.t1 | MTR_8g079660 | 50.000 | 104 | 52 | 0 | 11 | 114 | 8 | 111 | 2.64e-33 | 119 |
MS.gene62743.t1 | MTR_7g096610 | 57.143 | 98 | 41 | 1 | 8 | 104 | 5 | 102 | 4.83e-33 | 117 |
MS.gene62743.t1 | MTR_6g027710 | 51.923 | 104 | 49 | 1 | 10 | 112 | 39 | 142 | 5.20e-33 | 117 |
MS.gene62743.t1 | MTR_7g075230 | 53.043 | 115 | 51 | 2 | 11 | 122 | 12 | 126 | 1.09e-32 | 115 |
MS.gene62743.t1 | MTR_1g070205 | 39.877 | 163 | 89 | 2 | 11 | 172 | 12 | 166 | 1.83e-32 | 116 |
MS.gene62743.t1 | MTR_5g093010 | 46.552 | 116 | 58 | 1 | 12 | 127 | 6 | 117 | 3.17e-32 | 112 |
MS.gene62743.t1 | MTR_8g079620 | 46.154 | 104 | 56 | 0 | 11 | 114 | 8 | 111 | 1.94e-29 | 108 |
MS.gene62743.t1 | MTR_4g107450 | 37.580 | 157 | 86 | 4 | 12 | 161 | 11 | 162 | 6.88e-29 | 108 |
MS.gene62743.t1 | MTR_6g011200 | 43.878 | 98 | 54 | 1 | 9 | 105 | 7 | 104 | 5.16e-28 | 105 |
MS.gene62743.t1 | MTR_6g027700 | 48.515 | 101 | 51 | 1 | 11 | 110 | 7 | 107 | 5.24e-28 | 103 |
MS.gene62743.t1 | MTR_6g011230 | 43.000 | 100 | 57 | 0 | 8 | 107 | 8 | 107 | 3.78e-27 | 101 |
MS.gene62743.t1 | MTR_8g079580 | 39.716 | 141 | 79 | 2 | 11 | 145 | 8 | 148 | 1.41e-26 | 100 |
MS.gene62743.t1 | MTR_6g011250 | 48.454 | 97 | 45 | 2 | 8 | 103 | 6 | 98 | 4.51e-26 | 98.2 |
MS.gene62743.t1 | MTR_8g017090 | 40.385 | 104 | 62 | 0 | 8 | 111 | 9 | 112 | 1.85e-24 | 97.1 |
MS.gene62743.t1 | MTR_4g099230 | 38.462 | 104 | 62 | 2 | 12 | 114 | 3 | 105 | 5.38e-23 | 89.7 |
MS.gene62743.t1 | MTR_2g100020 | 41.667 | 96 | 56 | 0 | 12 | 107 | 20 | 115 | 1.57e-21 | 88.6 |
MS.gene62743.t1 | MTR_5g085390 | 39.423 | 104 | 62 | 1 | 9 | 111 | 7 | 110 | 3.91e-20 | 84.0 |
MS.gene62743.t1 | MTR_4g088035 | 35.556 | 90 | 58 | 0 | 10 | 99 | 5 | 94 | 1.32e-18 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62743.t1 | AT3G27650 | 84.071 | 113 | 18 | 0 | 5 | 117 | 33 | 145 | 5.96e-69 | 206 |
MS.gene62743.t1 | AT5G63090 | 82.203 | 118 | 21 | 0 | 1 | 118 | 1 | 118 | 4.71e-67 | 202 |
MS.gene62743.t1 | AT5G63090 | 82.203 | 118 | 21 | 0 | 1 | 118 | 1 | 118 | 4.71e-67 | 202 |
MS.gene62743.t1 | AT5G63090 | 82.203 | 118 | 21 | 0 | 1 | 118 | 1 | 118 | 4.71e-67 | 202 |
MS.gene62743.t1 | AT5G63090 | 82.203 | 118 | 21 | 0 | 1 | 118 | 1 | 118 | 4.71e-67 | 202 |
MS.gene62743.t1 | AT1G65620 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 7.55e-50 | 159 |
MS.gene62743.t1 | AT1G65620 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 7.55e-50 | 159 |
MS.gene62743.t1 | AT1G65620 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 7.55e-50 | 159 |
MS.gene62743.t1 | AT1G65620 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 7.55e-50 | 159 |
MS.gene62743.t1 | AT1G65620 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 7.55e-50 | 159 |
MS.gene62743.t1 | AT5G66870 | 65.217 | 115 | 36 | 1 | 1 | 115 | 1 | 111 | 9.21e-50 | 162 |
MS.gene62743.t1 | AT2G30130 | 62.281 | 114 | 39 | 1 | 9 | 122 | 6 | 115 | 4.45e-48 | 155 |
MS.gene62743.t1 | AT2G23660 | 59.813 | 107 | 43 | 0 | 8 | 114 | 2 | 108 | 3.06e-44 | 148 |
MS.gene62743.t1 | AT2G23660 | 59.813 | 107 | 43 | 0 | 8 | 114 | 2 | 108 | 3.06e-44 | 148 |
MS.gene62743.t1 | AT2G23660 | 59.813 | 107 | 43 | 0 | 8 | 114 | 2 | 108 | 3.06e-44 | 148 |
MS.gene62743.t1 | AT1G16530 | 61.607 | 112 | 42 | 1 | 10 | 120 | 13 | 124 | 3.32e-44 | 144 |
MS.gene62743.t1 | AT1G31320 | 59.322 | 118 | 46 | 1 | 10 | 125 | 12 | 129 | 3.44e-44 | 144 |
MS.gene62743.t1 | AT2G30340 | 55.932 | 118 | 47 | 1 | 10 | 122 | 51 | 168 | 4.08e-43 | 144 |
MS.gene62743.t1 | AT2G30340 | 55.932 | 118 | 47 | 1 | 10 | 122 | 52 | 169 | 4.19e-43 | 144 |
MS.gene62743.t1 | AT3G11090 | 58.333 | 108 | 45 | 0 | 8 | 115 | 8 | 115 | 1.08e-42 | 140 |
MS.gene62743.t1 | AT1G07900 | 59.223 | 103 | 42 | 0 | 10 | 112 | 32 | 134 | 1.11e-41 | 138 |
MS.gene62743.t1 | AT2G28500 | 59.223 | 103 | 42 | 0 | 10 | 112 | 54 | 156 | 3.21e-41 | 138 |
MS.gene62743.t1 | AT2G40470 | 61.905 | 105 | 40 | 0 | 10 | 114 | 19 | 123 | 6.26e-40 | 134 |
MS.gene62743.t1 | AT2G40470 | 61.905 | 105 | 40 | 0 | 10 | 114 | 44 | 148 | 1.84e-39 | 134 |
MS.gene62743.t1 | AT3G26660 | 51.304 | 115 | 55 | 1 | 12 | 125 | 6 | 120 | 2.54e-39 | 130 |
MS.gene62743.t1 | AT3G26620 | 56.000 | 100 | 44 | 0 | 12 | 111 | 6 | 105 | 4.78e-39 | 129 |
MS.gene62743.t1 | AT2G42430 | 55.372 | 121 | 49 | 2 | 1 | 116 | 1 | 121 | 6.81e-38 | 130 |
MS.gene62743.t1 | AT3G03760 | 57.692 | 104 | 43 | 1 | 10 | 112 | 50 | 153 | 2.50e-37 | 129 |
MS.gene62743.t1 | AT4G00220 | 60.606 | 99 | 38 | 1 | 14 | 111 | 20 | 118 | 1.15e-36 | 127 |
MS.gene62743.t1 | AT2G45420 | 60.606 | 99 | 38 | 1 | 14 | 111 | 40 | 138 | 2.24e-36 | 127 |
MS.gene62743.t1 | AT4G00210 | 55.357 | 112 | 49 | 1 | 1 | 111 | 1 | 112 | 2.85e-36 | 125 |
MS.gene62743.t1 | AT5G06080 | 51.402 | 107 | 51 | 1 | 10 | 115 | 6 | 112 | 2.53e-34 | 119 |
MS.gene62743.t1 | AT2G45410 | 44.937 | 158 | 79 | 4 | 14 | 170 | 19 | 169 | 2.95e-33 | 117 |
MS.gene62743.t1 | AT2G31310 | 55.208 | 96 | 42 | 1 | 10 | 104 | 6 | 101 | 3.34e-33 | 116 |
MS.gene62743.t1 | AT3G58190 | 55.660 | 106 | 46 | 1 | 1 | 105 | 1 | 106 | 4.04e-33 | 117 |
MS.gene62743.t1 | AT2G42440 | 52.525 | 99 | 46 | 1 | 8 | 105 | 4 | 102 | 6.92e-33 | 117 |
MS.gene62743.t1 | AT3G50510 | 47.170 | 106 | 56 | 0 | 9 | 114 | 10 | 115 | 8.05e-30 | 108 |
MS.gene62743.t1 | AT3G50510 | 47.170 | 106 | 56 | 0 | 9 | 114 | 10 | 115 | 8.05e-30 | 108 |
MS.gene62743.t1 | AT5G35900 | 41.071 | 112 | 66 | 0 | 12 | 123 | 6 | 117 | 1.02e-26 | 100 |
MS.gene62743.t1 | AT3G13850 | 40.777 | 103 | 61 | 0 | 12 | 114 | 37 | 139 | 1.34e-25 | 99.4 |
MS.gene62743.t1 | AT3G47870 | 37.615 | 109 | 68 | 0 | 8 | 116 | 33 | 141 | 1.67e-25 | 100 |
MS.gene62743.t1 | AT1G72980 | 40.541 | 111 | 66 | 0 | 1 | 111 | 3 | 113 | 5.68e-24 | 93.6 |
MS.gene62743.t1 | AT1G06280 | 46.753 | 77 | 41 | 0 | 12 | 88 | 25 | 101 | 4.58e-20 | 83.2 |
MS.gene62743.t1 | AT4G22700 | 36.937 | 111 | 68 | 2 | 12 | 121 | 6 | 115 | 6.99e-18 | 77.4 |
MS.gene62743.t1 | AT2G19820 | 37.363 | 91 | 56 | 1 | 8 | 97 | 9 | 99 | 5.41e-16 | 70.5 |
MS.gene62743.t1 | AT5G15060 | 43.243 | 74 | 38 | 2 | 12 | 82 | 18 | 90 | 2.00e-14 | 67.0 |
Find 39 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAATGTTCACAAAATATT+TGG | 0.149406 | 7.3:-65442264 | MS.gene62743:CDS |
GCAAATTTCTGTGGCTCTTC+TGG | 0.194109 | 7.3:+65442285 | None:intergenic |
AGGATTAAAGATCCAGTTTA+TGG | 0.225345 | 7.3:-65442153 | MS.gene62743:CDS |
GGCTCTTCTGGTGGGAAATA+TGG | 0.297872 | 7.3:+65442297 | None:intergenic |
AATCCTTGCCTCGGCTTCAT+AGG | 0.305194 | 7.3:+65442170 | None:intergenic |
GGAGCCTAATAACTTGTCTT+TGG | 0.306861 | 7.3:+65442106 | None:intergenic |
GCACCAACACAACCATAAAC+TGG | 0.396732 | 7.3:+65442141 | None:intergenic |
TCCTCCAAAGACAAGTTATT+AGG | 0.401520 | 7.3:-65442110 | MS.gene62743:CDS |
TAGTAGAATCAAGTTCCCTT+TGG | 0.453354 | 7.3:+65442085 | None:intergenic |
TATGGAGCAAATATGCAATC+TGG | 0.454516 | 7.3:+65442315 | None:intergenic |
AATTTCTGTGGCTCTTCTGG+TGG | 0.462397 | 7.3:+65442288 | None:intergenic |
TTGTCTTTGGAGGACTGAAA+TGG | 0.466727 | 7.3:+65442119 | None:intergenic |
ACAAGGATCGGTGGTGAAGA+TGG | 0.475213 | 7.3:-65442003 | MS.gene62743:CDS |
GCCTAATAACTTGTCTTTGG+AGG | 0.488921 | 7.3:+65442109 | None:intergenic |
GATGGAAGCGGTTCTTCTCT+CGG | 0.503012 | 7.3:-65441985 | MS.gene62743:CDS |
GACAAGTTATTAGGCTCCAA+AGG | 0.508039 | 7.3:-65442101 | MS.gene62743:CDS |
TCTCGGTCAATCTCCTCCTC+CGG | 0.512178 | 7.3:-65441968 | MS.gene62743:CDS |
TGGATCTTTAATCCTTGCCT+CGG | 0.516855 | 7.3:+65442161 | None:intergenic |
GTAGCTGTGATATCATGATT+CGG | 0.523254 | 7.3:+65442024 | None:intergenic |
TCATTATTGTTCCAAGGAGA+AGG | 0.524865 | 7.3:+65441934 | None:intergenic |
TGAAGTGCAACAACATCAAA+GGG | 0.528377 | 7.3:-65442214 | MS.gene62743:CDS |
ACAAGTTATTAGGCTCCAAA+GGG | 0.549638 | 7.3:-65442100 | MS.gene62743:CDS |
GATCCAGTTTATGGTTGTGT+TGG | 0.554848 | 7.3:-65442144 | MS.gene62743:CDS |
ATGAAGTGCAACAACATCAA+AGG | 0.561125 | 7.3:-65442215 | MS.gene62743:CDS |
ATTTCTGTGGCTCTTCTGGT+GGG | 0.562695 | 7.3:+65442289 | None:intergenic |
GATGGTTATCACACAGGAGG+AGG | 0.570284 | 7.3:-65441901 | MS.gene62743:CDS |
CTCTCTTGCCTATGAAGCCG+AGG | 0.570500 | 7.3:-65442178 | MS.gene62743:CDS |
AGTGGATCATTATTGTTCCA+AGG | 0.579950 | 7.3:+65441928 | None:intergenic |
TGAACATTTGCAAATTTCTG+TGG | 0.582165 | 7.3:+65442276 | None:intergenic |
TTGCCTATGAAGCCGAGGCA+AGG | 0.591021 | 7.3:-65442173 | MS.gene62743:CDS |
AATAATGATCCACTTGGCGA+TGG | 0.592711 | 7.3:-65441919 | MS.gene62743:CDS |
TGGAACAATAATGATCCACT+TGG | 0.604864 | 7.3:-65441925 | MS.gene62743:CDS |
ATCATGATATCACAGCTACA+AGG | 0.605340 | 7.3:-65442020 | MS.gene62743:CDS |
ATCGGTGGTGAAGATGGAAG+CGG | 0.616830 | 7.3:-65441997 | MS.gene62743:CDS |
GATATCACAGCTACAAGGAT+CGG | 0.621778 | 7.3:-65442015 | MS.gene62743:CDS |
ATCACAGCTACAAGGATCGG+TGG | 0.651340 | 7.3:-65442012 | MS.gene62743:CDS |
GTGTGATAACCATCGCCAAG+TGG | 0.657231 | 7.3:+65441910 | None:intergenic |
GGCGATGGTTATCACACAGG+AGG | 0.663949 | 7.3:-65441904 | MS.gene62743:CDS |
CTTGGCGATGGTTATCACAC+AGG | 0.665211 | 7.3:-65441907 | MS.gene62743:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | GCAAATGTTCACAAAATATT+TGG | - | chr7.3:65442008-65442027 | MS.gene62743:CDS | 25.0% |
AGGATTAAAGATCCAGTTTA+TGG | - | chr7.3:65442119-65442138 | MS.gene62743:CDS | 30.0% | |
TGAACATTTGCAAATTTCTG+TGG | + | chr7.3:65441999-65442018 | None:intergenic | 30.0% | |
ACAAGTTATTAGGCTCCAAA+GGG | - | chr7.3:65442172-65442191 | MS.gene62743:CDS | 35.0% | |
AGTGGATCATTATTGTTCCA+AGG | + | chr7.3:65442347-65442366 | None:intergenic | 35.0% | |
ATCATGATATCACAGCTACA+AGG | - | chr7.3:65442252-65442271 | MS.gene62743:CDS | 35.0% | |
ATGAAGTGCAACAACATCAA+AGG | - | chr7.3:65442057-65442076 | MS.gene62743:CDS | 35.0% | |
GTAGCTGTGATATCATGATT+CGG | + | chr7.3:65442251-65442270 | None:intergenic | 35.0% | |
TAGTAGAATCAAGTTCCCTT+TGG | + | chr7.3:65442190-65442209 | None:intergenic | 35.0% | |
TATGGAGCAAATATGCAATC+TGG | + | chr7.3:65441960-65441979 | None:intergenic | 35.0% | |
TCATTATTGTTCCAAGGAGA+AGG | + | chr7.3:65442341-65442360 | None:intergenic | 35.0% | |
TCCTCCAAAGACAAGTTATT+AGG | - | chr7.3:65442162-65442181 | MS.gene62743:CDS | 35.0% | |
TGAAGTGCAACAACATCAAA+GGG | - | chr7.3:65442058-65442077 | MS.gene62743:CDS | 35.0% | |
TGGAACAATAATGATCCACT+TGG | - | chr7.3:65442347-65442366 | MS.gene62743:CDS | 35.0% | |
! | CTTTTTACTATCCTTCTCCT+TGG | - | chr7.3:65442327-65442346 | MS.gene62743:CDS | 35.0% |
AATAATGATCCACTTGGCGA+TGG | - | chr7.3:65442353-65442372 | MS.gene62743:CDS | 40.0% | |
GACAAGTTATTAGGCTCCAA+AGG | - | chr7.3:65442171-65442190 | MS.gene62743:CDS | 40.0% | |
GATATCACAGCTACAAGGAT+CGG | - | chr7.3:65442257-65442276 | MS.gene62743:CDS | 40.0% | |
GATCCAGTTTATGGTTGTGT+TGG | - | chr7.3:65442128-65442147 | MS.gene62743:CDS | 40.0% | |
GGAGAAGGATAGTAAAAAGC+CGG | + | chr7.3:65442326-65442345 | None:intergenic | 40.0% | |
TGGATCTTTAATCCTTGCCT+CGG | + | chr7.3:65442114-65442133 | None:intergenic | 40.0% | |
! | GCCTAATAACTTGTCTTTGG+AGG | + | chr7.3:65442166-65442185 | None:intergenic | 40.0% |
! | GGAGCCTAATAACTTGTCTT+TGG | + | chr7.3:65442169-65442188 | None:intergenic | 40.0% |
! | TTGTCTTTGGAGGACTGAAA+TGG | + | chr7.3:65442156-65442175 | None:intergenic | 40.0% |
AAAAACTTGCACGCAGCACA+TGG | + | chr7.3:65441921-65441940 | None:intergenic | 45.0% | |
AATTTCTGTGGCTCTTCTGG+TGG | + | chr7.3:65441987-65442006 | None:intergenic | 45.0% | |
ATTTCTGTGGCTCTTCTGGT+GGG | + | chr7.3:65441986-65442005 | None:intergenic | 45.0% | |
GAAGGATAGTAAAAAGCCGG+AGG | + | chr7.3:65442323-65442342 | None:intergenic | 45.0% | |
GCAAATTTCTGTGGCTCTTC+TGG | + | chr7.3:65441990-65442009 | None:intergenic | 45.0% | |
GCACCAACACAACCATAAAC+TGG | + | chr7.3:65442134-65442153 | None:intergenic | 45.0% | |
!! | CTGCGTGCAAGTTTTTGAGA+AGG | - | chr7.3:65441925-65441944 | MS.gene62743:CDS | 45.0% |
AATCCTTGCCTCGGCTTCAT+AGG | + | chr7.3:65442105-65442124 | None:intergenic | 50.0% | |
ACAAGGATCGGTGGTGAAGA+TGG | - | chr7.3:65442269-65442288 | MS.gene62743:CDS | 50.0% | |
ATCACAGCTACAAGGATCGG+TGG | - | chr7.3:65442260-65442279 | MS.gene62743:CDS | 50.0% | |
ATCGGTGGTGAAGATGGAAG+CGG | - | chr7.3:65442275-65442294 | MS.gene62743:CDS | 50.0% | |
CTTGGCGATGGTTATCACAC+AGG | - | chr7.3:65442365-65442384 | MS.gene62743:CDS | 50.0% | |
GATGGAAGCGGTTCTTCTCT+CGG | - | chr7.3:65442287-65442306 | MS.gene62743:CDS | 50.0% | |
GATGGTTATCACACAGGAGG+AGG | - | chr7.3:65442371-65442390 | MS.gene62743:CDS | 50.0% | |
GGATAGTAAAAAGCCGGAGG+AGG | + | chr7.3:65442320-65442339 | None:intergenic | 50.0% | |
GGCTCTTCTGGTGGGAAATA+TGG | + | chr7.3:65441978-65441997 | None:intergenic | 50.0% | |
GTGTGATAACCATCGCCAAG+TGG | + | chr7.3:65442365-65442384 | None:intergenic | 50.0% | |
CTCTCTTGCCTATGAAGCCG+AGG | - | chr7.3:65442094-65442113 | MS.gene62743:CDS | 55.0% | |
GGCGATGGTTATCACACAGG+AGG | - | chr7.3:65442368-65442387 | MS.gene62743:CDS | 55.0% | |
TCTCGGTCAATCTCCTCCTC+CGG | - | chr7.3:65442304-65442323 | MS.gene62743:CDS | 55.0% | |
TTGCCTATGAAGCCGAGGCA+AGG | - | chr7.3:65442099-65442118 | MS.gene62743:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 65441888 | 65442406 | 65441888 | ID=MS.gene62743 |
chr7.3 | mRNA | 65441888 | 65442406 | 65441888 | ID=MS.gene62743.t1;Parent=MS.gene62743 |
chr7.3 | exon | 65441888 | 65442406 | 65441888 | ID=MS.gene62743.t1.exon1;Parent=MS.gene62743.t1 |
chr7.3 | CDS | 65441888 | 65442406 | 65441888 | ID=cds.MS.gene62743.t1;Parent=MS.gene62743.t1 |
Gene Sequence |
Protein sequence |