AlfalfaGEDB | MS.gene62743

M. sativa cultivar XinJiangDaYe / MS.gene62743

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62743.t1	XP_013448135.1	87.8	172	21	0	1	172	1	172	1.90E-80	308.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62743.t1	Q8L8Q3	84.1	113	18	0	5	117	33	145	3.6e-51	202.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62743.t1	A0A072TXJ1	87.8	172	21	0	1	172	1	172	1.4e-80	308.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene62743.t1	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056422	MS.gene62743	0.80461	1.99E-49	-1.69E-46
MS.gene060401	MS.gene62743	0.824676	7.10E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62743.t1	MTR_7g033800	96.512	172	6	0	1	172	1	172	5.97e-126	351
MS.gene62743.t1	MTR_6g005070	87.273	110	14	0	4	113	2	111	1.19e-68	205
MS.gene62743.t1	MTR_3g077240	85.217	115	16	1	1	115	1	114	1.33e-68	207
MS.gene62743.t1	MTR_4g105170	63.953	172	47	3	1	157	1	172	5.68e-68	205
MS.gene62743.t1	MTR_6g005080	84.821	112	17	0	4	115	3	114	1.29e-67	202
MS.gene62743.t1	MTR_5g083230	53.020	149	66	1	9	157	4	148	2.97e-50	159
MS.gene62743.t1	MTR_8g040900	71.560	109	31	0	6	114	2	110	4.39e-50	161
MS.gene62743.t1	MTR_5g017950	66.364	110	37	0	5	114	2	111	2.52e-49	162
MS.gene62743.t1	MTR_3g073690	66.667	111	37	0	5	115	3	113	1.66e-48	156
MS.gene62743.t1	MTR_5g083010	50.000	150	69	1	8	157	8	151	6.01e-48	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62743.t1	AT3G27650	84.071	113	18	0	5	117	33	145	5.96e-69	206
MS.gene62743.t1	AT5G63090	82.203	118	21	0	1	118	1	118	4.71e-67	202
MS.gene62743.t1	AT5G63090	82.203	118	21	0	1	118	1	118	4.71e-67	202
MS.gene62743.t1	AT5G63090	82.203	118	21	0	1	118	1	118	4.71e-67	202
MS.gene62743.t1	AT5G63090	82.203	118	21	0	1	118	1	118	4.71e-67	202
MS.gene62743.t1	AT1G65620	68.966	116	34	1	1	116	1	114	7.55e-50	159
MS.gene62743.t1	AT1G65620	68.966	116	34	1	1	116	1	114	7.55e-50	159
MS.gene62743.t1	AT1G65620	68.966	116	34	1	1	116	1	114	7.55e-50	159
MS.gene62743.t1	AT1G65620	68.966	116	34	1	1	116	1	114	7.55e-50	159
MS.gene62743.t1	AT1G65620	68.966	116	34	1	1	116	1	114	7.55e-50	159

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Find 39 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAATGATCCACTTGGCGA+TGG	0.592711	7.3:-65441919	MS.gene62743:CDS
AATCCTTGCCTCGGCTTCAT+AGG	0.305194	7.3:+65442170	None:intergenic
AATTTCTGTGGCTCTTCTGG+TGG	0.462397	7.3:+65442288	None:intergenic
ACAAGGATCGGTGGTGAAGA+TGG	0.475213	7.3:-65442003	MS.gene62743:CDS
ACAAGTTATTAGGCTCCAAA+GGG	0.549638	7.3:-65442100	MS.gene62743:CDS
AGGATTAAAGATCCAGTTTA+TGG	0.225345	7.3:-65442153	MS.gene62743:CDS
AGTGGATCATTATTGTTCCA+AGG	0.579950	7.3:+65441928	None:intergenic
ATCACAGCTACAAGGATCGG+TGG	0.651340	7.3:-65442012	MS.gene62743:CDS
ATCATGATATCACAGCTACA+AGG	0.605340	7.3:-65442020	MS.gene62743:CDS
ATCGGTGGTGAAGATGGAAG+CGG	0.616830	7.3:-65441997	MS.gene62743:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGATTAAAGATCCAGTTTA+TGG	-	chr7.3:65442119-65442138	MS.gene62743:CDS	30.0%
TGAACATTTGCAAATTTCTG+TGG	+	chr7.3:65441999-65442018	None:intergenic	30.0%
ACAAGTTATTAGGCTCCAAA+GGG	-	chr7.3:65442172-65442191	MS.gene62743:CDS	35.0%
AGTGGATCATTATTGTTCCA+AGG	+	chr7.3:65442347-65442366	None:intergenic	35.0%
ATCATGATATCACAGCTACA+AGG	-	chr7.3:65442252-65442271	MS.gene62743:CDS	35.0%
ATGAAGTGCAACAACATCAA+AGG	-	chr7.3:65442057-65442076	MS.gene62743:CDS	35.0%
GTAGCTGTGATATCATGATT+CGG	+	chr7.3:65442251-65442270	None:intergenic	35.0%
TAGTAGAATCAAGTTCCCTT+TGG	+	chr7.3:65442190-65442209	None:intergenic	35.0%
TATGGAGCAAATATGCAATC+TGG	+	chr7.3:65441960-65441979	None:intergenic	35.0%
TCATTATTGTTCCAAGGAGA+AGG	+	chr7.3:65442341-65442360	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	65441888	65442406	65441888	ID=MS.gene62743
chr7.3	mRNA	65441888	65442406	65441888	ID=MS.gene62743.t1;Parent=MS.gene62743
chr7.3	exon	65441888	65442406	65441888	ID=MS.gene62743.t1.exon1;Parent=MS.gene62743.t1
chr7.3	CDS	65441888	65442406	65441888	ID=cds.MS.gene62743.t1;Parent=MS.gene62743.t1

Gene Sequence

>MS.gene62743

ATGGCATCTTCAAGCGCTTACTCAAATTCACCATGTGCTGCGTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTCCCACCAGAAGAGCCACAGAAATTTGCAAATGTTCACAAAATATTTGGTGCAAGCAATGTGAGTAAACTTCTGAATGAAGTGCAACAACATCAAAGGGAAGATGCAGTAAACTCTCTTGCCTATGAAGCCGAGGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGTGCCATTTCAGTCCTCCAAAGACAAGTTATTAGGCTCCAAAGGGAACTTGATTCTACTAACGCTGATTTGATTCGCTATACTACTTGCACTGAAATTCCGAATCATGATATCACAGCTACAAGGATCGGTGGTGAAGATGGAAGCGGTTCTTCTCTCGGTCAATCTCCTCCTCCGGCTTTTTACTATCCTTCTCCTTGGAACAATAATGATCCACTTGGCGATGGTTATCACACAGGAGGAGGTGACAATATATAA

Protein sequence

>MS.gene62743.t1

MASSSAYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQQHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQRELDSTNADLIRYTTCTEIPNHDITATRIGGEDGSGSSLGQSPPPAFYYPSPWNNNDPLGDGYHTGGGDNI