Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62782.t1 | GAU37179.1 | 71.7 | 173 | 42 | 2 | 3 | 168 | 10 | 182 | 9.90E-61 | 243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62782.t1 | K4BIZ9 | 46.2 | 169 | 73 | 5 | 3 | 159 | 15 | 177 | 2.3e-26 | 120.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62782.t1 | A0A2Z6P0M5 | 71.7 | 173 | 42 | 2 | 3 | 168 | 10 | 182 | 7.1e-61 | 243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62782.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054576 | MS.gene62782 | 0.800218 | 1.60E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62782.t1 | MTR_8g005750 | 68.605 | 172 | 42 | 5 | 3 | 168 | 7 | 172 | 2.03e-71 | 217 |
| MS.gene62782.t1 | MTR_0002s1250 | 52.514 | 179 | 66 | 5 | 3 | 170 | 9 | 179 | 1.64e-53 | 171 |
| MS.gene62782.t1 | MTR_8g032510 | 48.663 | 187 | 77 | 7 | 3 | 172 | 10 | 194 | 9.97e-45 | 149 |
| MS.gene62782.t1 | MTR_7g073380 | 45.810 | 179 | 81 | 5 | 3 | 167 | 17 | 193 | 5.60e-44 | 147 |
| MS.gene62782.t1 | MTR_2g075690 | 42.105 | 190 | 79 | 5 | 1 | 161 | 16 | 203 | 1.68e-42 | 144 |
| MS.gene62782.t1 | MTR_7g073430 | 44.578 | 166 | 82 | 3 | 3 | 158 | 16 | 181 | 1.22e-41 | 141 |
| MS.gene62782.t1 | MTR_7g117200 | 38.462 | 182 | 94 | 3 | 4 | 172 | 15 | 191 | 1.33e-31 | 116 |
| MS.gene62782.t1 | MTR_5g067700 | 40.698 | 172 | 86 | 7 | 3 | 166 | 16 | 179 | 1.39e-30 | 111 |
| MS.gene62782.t1 | MTR_2g075610 | 51.429 | 105 | 46 | 2 | 72 | 172 | 3 | 106 | 3.34e-30 | 108 |
| MS.gene62782.t1 | MTR_2g075680 | 35.897 | 195 | 91 | 4 | 1 | 161 | 16 | 210 | 3.59e-30 | 112 |
| MS.gene62782.t1 | MTR_2g075750 | 55.056 | 89 | 36 | 1 | 84 | 168 | 13 | 101 | 9.57e-30 | 107 |
| MS.gene62782.t1 | MTR_2g075700 | 35.602 | 191 | 88 | 4 | 1 | 158 | 15 | 203 | 1.96e-29 | 110 |
| MS.gene62782.t1 | MTR_3g093830 | 40.361 | 166 | 83 | 5 | 7 | 158 | 23 | 186 | 7.12e-27 | 103 |
| MS.gene62782.t1 | MTR_3g090860 | 31.443 | 194 | 99 | 5 | 3 | 165 | 9 | 199 | 1.89e-22 | 92.0 |
| MS.gene62782.t1 | MTR_8g099350 | 32.812 | 192 | 98 | 7 | 4 | 169 | 15 | 201 | 3.45e-21 | 89.0 |
| MS.gene62782.t1 | MTR_8g027860 | 31.746 | 189 | 101 | 5 | 4 | 165 | 15 | 202 | 8.31e-20 | 85.1 |
| MS.gene62782.t1 | MTR_5g067680 | 51.471 | 68 | 33 | 0 | 94 | 161 | 197 | 264 | 6.01e-18 | 80.1 |
| MS.gene62782.t1 | MTR_3g095080 | 46.970 | 66 | 32 | 1 | 99 | 164 | 168 | 230 | 4.07e-14 | 68.2 |
| MS.gene62782.t1 | MTR_7g028415 | 54.237 | 59 | 24 | 1 | 99 | 157 | 93 | 148 | 4.40e-14 | 66.6 |
| MS.gene62782.t1 | MTR_7g028710 | 54.237 | 59 | 24 | 1 | 99 | 157 | 93 | 148 | 4.40e-14 | 66.6 |
| MS.gene62782.t1 | MTR_3g095080 | 46.970 | 66 | 32 | 1 | 99 | 164 | 144 | 206 | 5.01e-14 | 67.4 |
| MS.gene62782.t1 | MTR_8g092140 | 45.455 | 66 | 33 | 1 | 99 | 164 | 160 | 222 | 6.84e-14 | 67.4 |
| MS.gene62782.t1 | MTR_7g079010 | 55.172 | 58 | 23 | 1 | 99 | 156 | 141 | 195 | 1.56e-13 | 66.2 |
| MS.gene62782.t1 | MTR_7g062220 | 55.172 | 58 | 23 | 1 | 99 | 156 | 124 | 178 | 2.88e-13 | 66.6 |
| MS.gene62782.t1 | MTR_4g094588 | 51.724 | 58 | 25 | 1 | 99 | 156 | 178 | 232 | 1.76e-12 | 64.3 |
| MS.gene62782.t1 | MTR_8g007270 | 47.761 | 67 | 29 | 2 | 99 | 162 | 154 | 217 | 2.90e-12 | 62.8 |
| MS.gene62782.t1 | MTR_5g073620 | 40.541 | 74 | 42 | 1 | 97 | 168 | 670 | 743 | 8.85e-12 | 62.8 |
| MS.gene62782.t1 | MTR_5g091390 | 50.000 | 58 | 26 | 1 | 99 | 156 | 157 | 211 | 2.63e-11 | 60.8 |
| MS.gene62782.t1 | MTR_5g043880 | 48.276 | 58 | 27 | 1 | 99 | 156 | 124 | 178 | 2.89e-11 | 60.8 |
| MS.gene62782.t1 | MTR_3g009470 | 43.548 | 62 | 32 | 1 | 82 | 143 | 263 | 321 | 6.28e-11 | 60.5 |
| MS.gene62782.t1 | MTR_1g086790 | 47.458 | 59 | 28 | 1 | 99 | 157 | 158 | 213 | 9.18e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62782.t1 | AT3G56400 | 35.000 | 180 | 88 | 4 | 4 | 163 | 14 | 184 | 6.21e-26 | 100 |
| MS.gene62782.t1 | AT1G66560 | 39.130 | 161 | 80 | 6 | 5 | 158 | 13 | 162 | 6.47e-25 | 97.1 |
| MS.gene62782.t1 | AT1G66550 | 35.404 | 161 | 90 | 4 | 3 | 158 | 11 | 162 | 3.90e-24 | 95.1 |
| MS.gene62782.t1 | AT1G66600 | 40.310 | 129 | 66 | 2 | 35 | 158 | 40 | 162 | 7.22e-24 | 94.0 |
| MS.gene62782.t1 | AT1G66550 | 35.329 | 167 | 87 | 5 | 3 | 158 | 11 | 167 | 9.08e-24 | 94.0 |
| MS.gene62782.t1 | AT5G01900 | 35.542 | 166 | 91 | 6 | 3 | 158 | 10 | 169 | 1.33e-23 | 94.0 |
| MS.gene62782.t1 | AT1G80590 | 38.065 | 155 | 72 | 4 | 5 | 158 | 13 | 144 | 3.27e-23 | 92.4 |
| MS.gene62782.t1 | AT5G22570 | 38.462 | 130 | 71 | 3 | 35 | 158 | 43 | 169 | 1.04e-21 | 89.4 |
| MS.gene62782.t1 | AT4G11070 | 35.976 | 164 | 89 | 4 | 4 | 159 | 14 | 169 | 2.32e-20 | 85.5 |
| MS.gene62782.t1 | AT5G24110 | 31.609 | 174 | 97 | 5 | 1 | 164 | 17 | 178 | 3.56e-20 | 85.5 |
| MS.gene62782.t1 | AT2G46400 | 34.483 | 174 | 89 | 7 | 1 | 160 | 3 | 165 | 5.32e-20 | 84.7 |
| MS.gene62782.t1 | AT4G11070 | 35.065 | 154 | 71 | 3 | 35 | 159 | 48 | 201 | 6.17e-20 | 85.1 |
| MS.gene62782.t1 | AT2G40740 | 51.471 | 68 | 33 | 0 | 94 | 161 | 168 | 235 | 2.63e-19 | 82.8 |
| MS.gene62782.t1 | AT2G40740 | 51.471 | 68 | 33 | 0 | 94 | 161 | 177 | 244 | 3.12e-19 | 82.8 |
| MS.gene62782.t1 | AT4G23810 | 45.455 | 88 | 40 | 1 | 82 | 161 | 133 | 220 | 8.17e-19 | 82.0 |
| MS.gene62782.t1 | AT2G40750 | 29.500 | 200 | 102 | 3 | 3 | 163 | 17 | 216 | 1.41e-18 | 81.6 |
| MS.gene62782.t1 | AT5G45260 | 43.590 | 78 | 41 | 2 | 82 | 156 | 1188 | 1265 | 3.75e-13 | 67.0 |
| MS.gene62782.t1 | AT2G46130 | 51.724 | 58 | 25 | 1 | 99 | 156 | 30 | 84 | 5.02e-13 | 62.4 |
| MS.gene62782.t1 | AT4G39410 | 48.276 | 58 | 27 | 1 | 99 | 156 | 223 | 277 | 1.26e-12 | 64.7 |
| MS.gene62782.t1 | AT2G44745 | 49.231 | 65 | 30 | 1 | 99 | 163 | 145 | 206 | 1.32e-12 | 63.9 |
| MS.gene62782.t1 | AT1G64000 | 50.000 | 58 | 26 | 1 | 99 | 156 | 114 | 168 | 1.46e-12 | 63.2 |
| MS.gene62782.t1 | AT4G26440 | 45.312 | 64 | 31 | 2 | 81 | 143 | 159 | 219 | 1.47e-12 | 65.1 |
| MS.gene62782.t1 | AT5G49520 | 50.847 | 59 | 26 | 1 | 99 | 157 | 221 | 276 | 5.65e-12 | 63.2 |
| MS.gene62782.t1 | AT1G29860 | 50.000 | 58 | 26 | 1 | 99 | 156 | 136 | 190 | 7.12e-12 | 62.4 |
| MS.gene62782.t1 | AT5G46350 | 50.000 | 58 | 26 | 1 | 99 | 156 | 183 | 237 | 1.25e-11 | 62.0 |
| MS.gene62782.t1 | AT1G69310 | 48.276 | 58 | 27 | 1 | 99 | 156 | 147 | 201 | 1.57e-11 | 61.6 |
| MS.gene62782.t1 | AT1G69310 | 48.276 | 58 | 27 | 1 | 99 | 156 | 147 | 201 | 1.57e-11 | 61.6 |
| MS.gene62782.t1 | AT1G69310 | 48.276 | 58 | 27 | 1 | 99 | 156 | 147 | 201 | 1.57e-11 | 61.6 |
| MS.gene62782.t1 | AT5G41570 | 48.276 | 58 | 27 | 1 | 99 | 156 | 98 | 152 | 1.92e-11 | 60.1 |
| MS.gene62782.t1 | AT5G13080 | 49.153 | 59 | 27 | 1 | 99 | 157 | 67 | 122 | 2.22e-11 | 58.9 |
| MS.gene62782.t1 | AT4G18170 | 50.000 | 58 | 26 | 1 | 99 | 156 | 172 | 226 | 2.43e-11 | 61.2 |
| MS.gene62782.t1 | AT3G62340 | 49.153 | 59 | 27 | 1 | 99 | 157 | 118 | 173 | 3.85e-11 | 60.5 |
| MS.gene62782.t1 | AT2G37260 | 44.828 | 58 | 29 | 1 | 99 | 156 | 349 | 403 | 3.97e-11 | 60.8 |
| MS.gene62782.t1 | AT2G47260 | 47.458 | 59 | 28 | 1 | 99 | 157 | 174 | 229 | 4.12e-11 | 60.5 |
| MS.gene62782.t1 | AT2G37260 | 44.828 | 58 | 29 | 1 | 99 | 156 | 269 | 323 | 7.03e-11 | 60.1 |
| MS.gene62782.t1 | AT2G37260 | 44.828 | 58 | 29 | 1 | 99 | 156 | 267 | 321 | 7.13e-11 | 60.1 |
| MS.gene62782.t1 | AT5G43290 | 50.000 | 58 | 26 | 1 | 99 | 156 | 114 | 168 | 7.40e-11 | 59.7 |
Find 42 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATACACACCTTGAGTATT+TGG | 0.165030 | 8.4:+81179167 | None:intergenic |
| TTTGCACTTGTTTGGTTGCT+TGG | 0.274159 | 8.4:+81178932 | None:intergenic |
| TTGAATTCTTTGCACTTGTT+TGG | 0.303242 | 8.4:+81178924 | None:intergenic |
| GTTCAAAAGGGTGAGGGTAT+TGG | 0.366925 | 8.4:+81179973 | None:intergenic |
| GGGTATGAATGGAGAAAATA+TGG | 0.368996 | 8.4:-81179210 | MS.gene62782:CDS |
| ACCTTGAGTATTTGGAATTG+AGG | 0.393271 | 8.4:+81179175 | None:intergenic |
| GAGATCTCCTGAGATTTAGT+TGG | 0.441487 | 8.4:+81179917 | None:intergenic |
| TCAGAATGTCCAACAGATGA+TGG | 0.456231 | 8.4:-81179231 | MS.gene62782:CDS |
| AGATTTAGTTGGACTAATGA+AGG | 0.473744 | 8.4:+81179928 | None:intergenic |
| CGTGAGTTTGCAAACCAGCT+TGG | 0.479698 | 8.4:-81180079 | MS.gene62782:CDS |
| TTGTGATCATGAGGAGAAGT+GGG | 0.480824 | 8.4:+81178825 | None:intergenic |
| TTTGAACAAACATCACAAAA+CGG | 0.482778 | 8.4:-81179957 | MS.gene62782:CDS |
| CATTAGTCCAACTAAATCTC+AGG | 0.483913 | 8.4:-81179924 | MS.gene62782:CDS |
| TTTGTGATGTTTGTTCAAAA+GGG | 0.523519 | 8.4:+81179961 | None:intergenic |
| CATACTTCCACCACTGGTAG+AGG | 0.539107 | 8.4:-81179890 | MS.gene62782:CDS |
| CATTCATACCCATCATCTGT+TGG | 0.541481 | 8.4:+81179222 | None:intergenic |
| TTATTACAAGTTGTCCAAGC+TGG | 0.545077 | 8.4:+81180065 | None:intergenic |
| CAACAGATGATGGGTATGAA+TGG | 0.546718 | 8.4:-81179221 | MS.gene62782:CDS |
| GTAGAGGATCTTACAAAAGA+AGG | 0.546964 | 8.4:-81179874 | MS.gene62782:intron |
| TAATATGTGGTCTTATATGA+AGG | 0.547746 | 8.4:+81178892 | None:intergenic |
| TAGAAATGAGGCAATGGAGG+AGG | 0.549808 | 8.4:-81180116 | None:intergenic |
| ATATATGCAGGGACTACTAC+AGG | 0.552760 | 8.4:-81178981 | MS.gene62782:intron |
| TTTGTAAGATCCTCTACCAG+TGG | 0.556118 | 8.4:+81179880 | None:intergenic |
| GTTGACAAGAACAAGATGTT+GGG | 0.558462 | 8.4:+81180015 | None:intergenic |
| CATCTGAGTTATTGCAAGTG+TGG | 0.563470 | 8.4:+81178863 | None:intergenic |
| GATGAAGAATCATCATGAGT+TGG | 0.563893 | 8.4:-81180038 | MS.gene62782:CDS |
| TCCTCAATTCCAAATACTCA+AGG | 0.566315 | 8.4:-81179176 | MS.gene62782:intron |
| AACTACATCAACATGGGAGA+AGG | 0.572317 | 8.4:-81179256 | MS.gene62782:CDS |
| TCACAACATACTTCCACCAC+TGG | 0.575996 | 8.4:-81179896 | MS.gene62782:CDS |
| ATTGTGATCATGAGGAGAAG+TGG | 0.576024 | 8.4:+81178824 | None:intergenic |
| GTAAGATCCTCTACCAGTGG+TGG | 0.578848 | 8.4:+81179883 | None:intergenic |
| CAGAATGTCCAACAGATGAT+GGG | 0.586212 | 8.4:-81179230 | MS.gene62782:CDS |
| TGGAGGAGGAGCTAGTGAGA+GGG | 0.597611 | 8.4:-81180102 | MS.gene62782:CDS |
| GATGTTTGTTCAAAAGGGTG+AGG | 0.598856 | 8.4:+81179966 | None:intergenic |
| TGTTGACAAGAACAAGATGT+TGG | 0.603924 | 8.4:+81180014 | None:intergenic |
| ATGGAGGAGGAGCTAGTGAG+AGG | 0.606187 | 8.4:-81180103 | MS.gene62782:CDS |
| GAGGAAGTATTGTGATCATG+AGG | 0.607427 | 8.4:+81178816 | None:intergenic |
| CTGAGTTATTGCAAGTGTGG+CGG | 0.632598 | 8.4:+81178866 | None:intergenic |
| ATGTTTGTTCAAAAGGGTGA+GGG | 0.642130 | 8.4:+81179967 | None:intergenic |
| TATGTGGTCTTATATGAAGG+AGG | 0.655421 | 8.4:+81178895 | None:intergenic |
| AGTGTGGCGGTCGTAATATG+TGG | 0.655558 | 8.4:+81178879 | None:intergenic |
| TGTGATCATGAGGAGAAGTG+GGG | 0.725053 | 8.4:+81178826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATAAT+TGG | + | chr8.4:81179493-81179474 | None:intergenic | 0.0% |
| !!! | ATATATATATAATATTTTTT+AGG | - | chr8.4:81179481-81179500 | MS.gene62782:intron | 0.0% |
| !! | CATATATTAATTTAATTCAT+TGG | + | chr8.4:81179940-81179959 | None:intergenic | 10.0% |
| !!! | GTAATTTTTTTACTTATAAT+AGG | - | chr8.4:81179378-81179397 | MS.gene62782:intron | 10.0% |
| !! | CGAAATAATTAATAAATGAT+TGG | + | chr8.4:81179825-81179844 | None:intergenic | 15.0% |
| !! | GAATTAAATTAATATATGCA+GGG | - | chr8.4:81179942-81179961 | MS.gene62782:CDS | 15.0% |
| !! | TGAATTAAATTAATATATGC+AGG | - | chr8.4:81179941-81179960 | MS.gene62782:CDS | 15.0% |
| !!! | AATTACTTTTTTTAGATTCA+TGG | + | chr8.4:81179364-81179383 | None:intergenic | 15.0% |
| !!! | TGAGTTTTAATTAATTAACA+AGG | + | chr8.4:81179427-81179446 | None:intergenic | 15.0% |
| !! | AGAAAAGAATTAGTAAAACA+TGG | + | chr8.4:81179114-81179133 | None:intergenic | 20.0% |
| !! | CAAGAGAAGATATATTTATT+AGG | + | chr8.4:81179891-81179910 | None:intergenic | 20.0% |
| !! | TTCATTGGATCATATATATT+AGG | + | chr8.4:81179925-81179944 | None:intergenic | 20.0% |
| ! | GTTTATGCAAAAAGAGTTAA+TGG | - | chr8.4:81179625-81179644 | MS.gene62782:intron | 25.0% |
| ! | TTATAATCATGTTGTTCGTT+TGG | - | chr8.4:81179528-81179547 | MS.gene62782:intron | 25.0% |
| ! | TTGTCCTTTCATTTGTTTAA+AGG | - | chr8.4:81179151-81179170 | MS.gene62782:intron | 25.0% |
| ! | TTTGAACAAACATCACAAAA+CGG | - | chr8.4:81178977-81178996 | MS.gene62782:intron | 25.0% |
| ! | TTTGTGATGTTTGTTCAAAA+GGG | + | chr8.4:81178976-81178995 | None:intergenic | 25.0% |
| !! | TTATTGTTTGATGCTCTTTT+TGG | - | chr8.4:81179259-81179278 | MS.gene62782:CDS | 25.0% |
| !! | TTTTGTGATGTTTGTTCAAA+AGG | + | chr8.4:81178977-81178996 | None:intergenic | 25.0% |
| !! | TTTTTACTTATAATAGGGAC+CGG | - | chr8.4:81179384-81179403 | MS.gene62782:intron | 25.0% |
| !!! | TAATATGTGGTCTTATATGA+AGG | + | chr8.4:81180045-81180064 | None:intergenic | 25.0% |
| AAACAGATCTATCTATGTAG+AGG | + | chr8.4:81179868-81179887 | None:intergenic | 30.0% | |
| ACGTCCTTTAAACAAATGAA+AGG | + | chr8.4:81179158-81179177 | None:intergenic | 30.0% | |
| AGATTTAGTTGGACTAATGA+AGG | + | chr8.4:81179009-81179028 | None:intergenic | 30.0% | |
| ATATACACACCTTGAGTATT+TGG | + | chr8.4:81179770-81179789 | None:intergenic | 30.0% | |
| CAGAAAAACTACATCAACAT+GGG | - | chr8.4:81179672-81179691 | MS.gene62782:intron | 30.0% | |
| CAGTGAGCAATTTATGTATT+TGG | - | chr8.4:81179319-81179338 | MS.gene62782:intron | 30.0% | |
| TTGAATTCTTTGCACTTGTT+TGG | + | chr8.4:81180013-81180032 | None:intergenic | 30.0% | |
| ! | TTTTACTTATAATAGGGACC+GGG | - | chr8.4:81179385-81179404 | MS.gene62782:intron | 30.0% |
| AAATGTACTAGGTTGTGGTT+TGG | - | chr8.4:81179580-81179599 | MS.gene62782:intron | 35.0% | |
| AATGAAAGGACAAAGTGAGA+TGG | + | chr8.4:81179144-81179163 | None:intergenic | 35.0% | |
| ATGTTTGTTCAAAAGGGTGA+GGG | + | chr8.4:81178970-81178989 | None:intergenic | 35.0% | |
| CATGGAGCAATTCATGTATT+TGG | + | chr8.4:81179346-81179365 | None:intergenic | 35.0% | |
| CATTAGTCCAACTAAATCTC+AGG | - | chr8.4:81179010-81179029 | MS.gene62782:intron | 35.0% | |
| GATGAAGAATCATCATGAGT+TGG | - | chr8.4:81178896-81178915 | MS.gene62782:CDS | 35.0% | |
| GCAGAAAAACTACATCAACA+TGG | - | chr8.4:81179671-81179690 | MS.gene62782:intron | 35.0% | |
| GGGTATGAATGGAGAAAATA+TGG | - | chr8.4:81179724-81179743 | MS.gene62782:intron | 35.0% | |
| GTAGAGGATCTTACAAAAGA+AGG | - | chr8.4:81179060-81179079 | MS.gene62782:intron | 35.0% | |
| GTTGACAAGAACAAGATGTT+GGG | + | chr8.4:81178922-81178941 | None:intergenic | 35.0% | |
| TCCTCAATTCCAAATACTCA+AGG | - | chr8.4:81179758-81179777 | MS.gene62782:intron | 35.0% | |
| TGTTGACAAGAACAAGATGT+TGG | + | chr8.4:81178923-81178942 | None:intergenic | 35.0% | |
| TTATTACAAGTTGTCCAAGC+TGG | + | chr8.4:81178872-81178891 | None:intergenic | 35.0% | |
| ! | ACCTTGAGTATTTGGAATTG+AGG | + | chr8.4:81179762-81179781 | None:intergenic | 35.0% |
| !! | TATGTGGTCTTATATGAAGG+AGG | + | chr8.4:81180042-81180061 | None:intergenic | 35.0% |
| AACTACATCAACATGGGAGA+AGG | - | chr8.4:81179678-81179697 | MS.gene62782:intron | 40.0% | |
| ATATATGCAGGGACTACTAC+AGG | - | chr8.4:81179953-81179972 | MS.gene62782:CDS | 40.0% | |
| CAACCTAGTACATTTCAACG+AGG | + | chr8.4:81179575-81179594 | None:intergenic | 40.0% | |
| CAGAATGTCCAACAGATGAT+GGG | - | chr8.4:81179704-81179723 | MS.gene62782:intron | 40.0% | |
| CATCTGAGTTATTGCAAGTG+TGG | + | chr8.4:81180074-81180093 | None:intergenic | 40.0% | |
| CATTCATACCCATCATCTGT+TGG | + | chr8.4:81179715-81179734 | None:intergenic | 40.0% | |
| CGTTGAAATGTACTAGGTTG+TGG | - | chr8.4:81179575-81179594 | MS.gene62782:intron | 40.0% | |
| CTTCCTCGTTGAAATGTACT+AGG | - | chr8.4:81179569-81179588 | MS.gene62782:intron | 40.0% | |
| GAGATCTCCTGAGATTTAGT+TGG | + | chr8.4:81179020-81179039 | None:intergenic | 40.0% | |
| GATGTTTGTTCAAAAGGGTG+AGG | + | chr8.4:81178971-81178990 | None:intergenic | 40.0% | |
| GGAACTACTAGCTATTATCC+CGG | + | chr8.4:81179406-81179425 | None:intergenic | 40.0% | |
| TCAGAATGTCCAACAGATGA+TGG | - | chr8.4:81179703-81179722 | MS.gene62782:intron | 40.0% | |
| TTTGCACTTGTTTGGTTGCT+TGG | + | chr8.4:81180005-81180024 | None:intergenic | 40.0% | |
| TTTGTAAGATCCTCTACCAG+TGG | + | chr8.4:81179057-81179076 | None:intergenic | 40.0% | |
| !! | CAACAGATGATGGGTATGAA+TGG | - | chr8.4:81179713-81179732 | MS.gene62782:intron | 40.0% |
| CTGAGTTATTGCAAGTGTGG+CGG | + | chr8.4:81180071-81180090 | None:intergenic | 45.0% | |
| TCACAACATACTTCCACCAC+TGG | - | chr8.4:81179038-81179057 | MS.gene62782:intron | 45.0% | |
| ! | GTTCAAAAGGGTGAGGGTAT+TGG | + | chr8.4:81178964-81178983 | None:intergenic | 45.0% |
| !!! | TAATTTTTTTACTTATAATA+GGG | - | chr8.4:81179379-81179398 | MS.gene62782:intron | 5.0% |
| AGTGTGGCGGTCGTAATATG+TGG | + | chr8.4:81180058-81180077 | None:intergenic | 50.0% | |
| CATACTTCCACCACTGGTAG+AGG | - | chr8.4:81179044-81179063 | MS.gene62782:intron | 50.0% | |
| CGTGAGTTTGCAAACCAGCT+TGG | - | chr8.4:81178855-81178874 | MS.gene62782:CDS | 50.0% | |
| GTAAGATCCTCTACCAGTGG+TGG | + | chr8.4:81179054-81179073 | None:intergenic | 50.0% | |
| ATGGAGGAGGAGCTAGTGAG+AGG | - | chr8.4:81178831-81178850 | MS.gene62782:CDS | 55.0% | |
| TGGAGGAGGAGCTAGTGAGA+GGG | - | chr8.4:81178832-81178851 | MS.gene62782:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 81178831 | 81180125 | 81178831 | ID=MS.gene62782 |
| chr8.4 | mRNA | 81178831 | 81180125 | 81178831 | ID=MS.gene62782.t1;Parent=MS.gene62782 |
| chr8.4 | exon | 81179875 | 81180125 | 81179875 | ID=MS.gene62782.t1.exon1;Parent=MS.gene62782.t1 |
| chr8.4 | CDS | 81179875 | 81180125 | 81179875 | ID=cds.MS.gene62782.t1;Parent=MS.gene62782.t1 |
| chr8.4 | exon | 81179177 | 81179281 | 81179177 | ID=MS.gene62782.t1.exon2;Parent=MS.gene62782.t1 |
| chr8.4 | CDS | 81179177 | 81179281 | 81179177 | ID=cds.MS.gene62782.t1;Parent=MS.gene62782.t1 |
| chr8.4 | exon | 81178831 | 81178993 | 81178831 | ID=MS.gene62782.t1.exon3;Parent=MS.gene62782.t1 |
| chr8.4 | CDS | 81178831 | 81178993 | 81178831 | ID=cds.MS.gene62782.t1;Parent=MS.gene62782.t1 |
| Gene Sequence |
| Protein sequence |
