Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62816.t1 | XP_013457661.1 | 98 | 300 | 4 | 1 | 1 | 300 | 1 | 298 | 1.80E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62816.t1 | Q9LQ04 | 82.3 | 293 | 52 | 0 | 7 | 299 | 6 | 298 | 9.0e-143 | 507.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62816.t1 | I3SMF8 | 98.0 | 300 | 4 | 1 | 1 | 300 | 1 | 298 | 1.3e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057299 | MS.gene62816 | 0.893645 | 5.18E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62816.t1 | MTR_4g102550 | 98.000 | 300 | 4 | 1 | 1 | 300 | 1 | 298 | 0.0 | 603 |
| MS.gene62816.t1 | MTR_2g073240 | 81.724 | 290 | 53 | 0 | 8 | 297 | 391 | 680 | 8.79e-176 | 502 |
| MS.gene62816.t1 | MTR_0034s0060 | 82.807 | 285 | 49 | 0 | 13 | 297 | 513 | 797 | 3.65e-175 | 504 |
| MS.gene62816.t1 | MTR_1g009600 | 78.873 | 284 | 60 | 0 | 14 | 297 | 371 | 654 | 3.57e-167 | 479 |
| MS.gene62816.t1 | MTR_3g452330 | 65.217 | 92 | 32 | 0 | 14 | 105 | 147 | 238 | 2.50e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62816.t1 | AT1G63000 | 83.566 | 286 | 47 | 0 | 14 | 299 | 13 | 298 | 0.0 | 512 |
| MS.gene62816.t1 | AT1G78570 | 80.808 | 297 | 52 | 2 | 6 | 297 | 372 | 668 | 9.40e-177 | 504 |
| MS.gene62816.t1 | AT1G53500 | 78.621 | 290 | 62 | 0 | 8 | 297 | 377 | 666 | 1.41e-157 | 455 |
| MS.gene62816.t1 | AT3G14790 | 78.157 | 293 | 64 | 0 | 5 | 297 | 371 | 663 | 2.17e-157 | 454 |
| MS.gene62816.t1 | AT3G14790 | 78.157 | 293 | 64 | 0 | 5 | 297 | 374 | 666 | 2.65e-157 | 454 |
Find 88 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATGATCTTCATCTTCT+TGG | 0.210029 | 8.1:-21150916 | MS.gene62816:CDS |
| TCTAAAATGGTCATCGAGTT+TGG | 0.262726 | 8.1:+21150017 | None:intergenic |
| TCAAGCTCATTGTTACTTCT+TGG | 0.275443 | 8.1:+21149816 | None:intergenic |
| CAAGCTCATTGTTACTTCTT+GGG | 0.312171 | 8.1:+21149817 | None:intergenic |
| CAAGCTTTAACCTTCTGATT+TGG | 0.317551 | 8.1:+21149720 | None:intergenic |
| GGGAAGAAGTTCATCTAAAA+TGG | 0.318463 | 8.1:+21150004 | None:intergenic |
| CATCTTCTTGGATCCGGGAT+TGG | 0.324588 | 8.1:-21150904 | MS.gene62816:CDS |
| CCCCTCAAGTTTCTCATATA+CGG | 0.329932 | 8.1:-21151237 | MS.gene62816:CDS |
| TTTAATGCTGCTGGTGTTAC+GGG | 0.336811 | 8.1:-21151078 | MS.gene62816:CDS |
| CTCAAGAGTGAAGTTCTTCC+AGG | 0.342280 | 8.1:+21149863 | None:intergenic |
| AGAGAAACCTCACTGGAATC+TGG | 0.362925 | 8.1:-21149962 | MS.gene62816:CDS |
| TTGGATAAATCAGATGAAAT+AGG | 0.363426 | 8.1:+21150092 | None:intergenic |
| TCCTTGATAGACAATAGTTC+TGG | 0.368427 | 8.1:+21149768 | None:intergenic |
| GAAGATACTCCTAATTTCAT+TGG | 0.368560 | 8.1:-21150871 | MS.gene62816:CDS |
| TCTTGAGAATCGATCTTCAT+TGG | 0.371797 | 8.1:-21151136 | MS.gene62816:CDS |
| TATCTACAACCTTCTCATAT+CGG | 0.390642 | 8.1:+21150042 | None:intergenic |
| GTTTAATGCTGCTGGTGTTA+CGG | 0.392378 | 8.1:-21151079 | MS.gene62816:CDS |
| GATCTTCATCTTCTTGGATC+CGG | 0.397535 | 8.1:-21150910 | MS.gene62816:CDS |
| CGTATTCGAATTGGATCCCT+TGG | 0.400642 | 8.1:+21151169 | None:intergenic |
| GACCCGACCCGTATTCGAAT+TGG | 0.406229 | 8.1:+21151160 | None:intergenic |
| TCGGAGGAGGAGGATGGTGC+TGG | 0.407640 | 8.1:+21151264 | None:intergenic |
| ATCTTCATCTTCTTGGATCC+GGG | 0.408563 | 8.1:-21150909 | MS.gene62816:CDS |
| ATCTGGAACTTCACAAATCC+TGG | 0.419713 | 8.1:-21149945 | MS.gene62816:CDS |
| CTTTGCCATCTCAATTGAGA+TGG | 0.421086 | 8.1:+21149983 | None:intergenic |
| TCCAGAACTATTGTCTATCA+AGG | 0.428839 | 8.1:-21149769 | MS.gene62816:CDS |
| GGCTGGATAGGAGGCCTCTT+AGG | 0.432855 | 8.1:-21151207 | MS.gene62816:CDS |
| CAAGGGATCCAATTCGAATA+CGG | 0.434923 | 8.1:-21151168 | MS.gene62816:CDS |
| GAGGGGAGTGTCGGAGGAGG+AGG | 0.437559 | 8.1:+21151254 | None:intergenic |
| GTCTCACACCAGTCCACGTT+GGG | 0.462588 | 8.1:+21151051 | None:intergenic |
| ATCTACAACCTTCTCATATC+GGG | 0.463578 | 8.1:+21150043 | None:intergenic |
| TTCTTCCTTAAAACCAATCC+CGG | 0.465949 | 8.1:+21150891 | None:intergenic |
| TCATATACGGCCGCACCGGC+TGG | 0.469750 | 8.1:-21151224 | MS.gene62816:CDS |
| TCATTGTGGCTAACAACTCC+AGG | 0.479957 | 8.1:+21149927 | None:intergenic |
| ACATACCATAGCCTTGGTCT+TGG | 0.487323 | 8.1:+21150837 | None:intergenic |
| GGCCGCACCGGCTGGATAGG+AGG | 0.489760 | 8.1:-21151216 | MS.gene62816:CDS |
| AAGCTCATTGTTACTTCTTG+GGG | 0.490161 | 8.1:+21149818 | None:intergenic |
| CGGTACAGAGTTTGCCTAAG+AGG | 0.492780 | 8.1:+21151193 | None:intergenic |
| CGGGTCGACCCAACGTGGAC+TGG | 0.494677 | 8.1:-21151059 | MS.gene62816:CDS |
| TAACAATAAGTCCACGTTCA+CGG | 0.500654 | 8.1:+21150968 | None:intergenic |
| CTATCCGTGCTAATGTGGTT+GGG | 0.501072 | 8.1:-21151014 | MS.gene62816:CDS |
| ATCCAATTCGAATACGGGTC+GGG | 0.505835 | 8.1:-21151162 | MS.gene62816:CDS |
| GGCAAACTCTGTACCGCCCA+AGG | 0.511999 | 8.1:-21151186 | MS.gene62816:CDS |
| TTACTCCAAGACCAAGGCTA+TGG | 0.515471 | 8.1:-21150842 | MS.gene62816:intron |
| GCCGTATATGAGAAACTTGA+GGG | 0.516441 | 8.1:+21151236 | None:intergenic |
| CTTGAGGGGAGTGTCGGAGG+AGG | 0.523463 | 8.1:+21151251 | None:intergenic |
| CACTCTTGAGGAACAAGCTA+AGG | 0.523587 | 8.1:-21149850 | MS.gene62816:CDS |
| CGGAGGAGGAGGATGGTGCT+GGG | 0.526896 | 8.1:+21151265 | None:intergenic |
| AGTAACAATGAGCTTGATGC+GGG | 0.528741 | 8.1:-21149810 | MS.gene62816:CDS |
| GTATTCGAATTGGATCCCTT+GGG | 0.529711 | 8.1:+21151170 | None:intergenic |
| TTTGCCATCTCAATTGAGAT+GGG | 0.537632 | 8.1:+21149984 | None:intergenic |
| AAGGGATCCAATTCGAATAC+GGG | 0.542692 | 8.1:-21151167 | MS.gene62816:CDS |
| TGTGATGAAATTGCGAGGGT+TGG | 0.546615 | 8.1:+21150073 | None:intergenic |
| AATGTAACATACCATAGCCT+TGG | 0.554984 | 8.1:+21150831 | None:intergenic |
| TTTCTCATATACGGCCGCAC+CGG | 0.558062 | 8.1:-21151228 | MS.gene62816:CDS |
| TCTTCCCATCTCAATTGAGA+TGG | 0.561970 | 8.1:-21149988 | MS.gene62816:CDS |
| ATATCGATTCAAGCTTCACC+TGG | 0.568911 | 8.1:-21149881 | MS.gene62816:CDS |
| TAAGAGGCCTCCTATCCAGC+CGG | 0.572784 | 8.1:+21151209 | None:intergenic |
| GGAGTGTCGGAGGAGGAGGA+TGG | 0.576494 | 8.1:+21151258 | None:intergenic |
| AAACTTGAGGGGAGTGTCGG+AGG | 0.580469 | 8.1:+21151248 | None:intergenic |
| ACTATCCGTGCTAATGTGGT+TGG | 0.582347 | 8.1:-21151015 | MS.gene62816:CDS |
| GCAGCATTAAACACGTGTGT+TGG | 0.584742 | 8.1:+21151090 | None:intergenic |
| TACGGCCGCACCGGCTGGAT+AGG | 0.586868 | 8.1:-21151219 | MS.gene62816:CDS |
| GAGAAACTTGAGGGGAGTGT+CGG | 0.586872 | 8.1:+21151245 | None:intergenic |
| CTGGAAGAACTTCACTCTTG+AGG | 0.589081 | 8.1:-21149862 | MS.gene62816:CDS |
| GGCCGTATATGAGAAACTTG+AGG | 0.591913 | 8.1:+21151235 | None:intergenic |
| AATAGGCATCCTCACTCTCA+AGG | 0.595727 | 8.1:+21150109 | None:intergenic |
| TGATGCGGGAAAATTGAAGA+AGG | 0.598610 | 8.1:-21149796 | MS.gene62816:CDS |
| TGTCTTCAAGCCAAATCAGA+AGG | 0.603264 | 8.1:-21149730 | MS.gene62816:CDS |
| ATGGCAAAGAGAAACCTCAC+TGG | 0.606695 | 8.1:-21149969 | MS.gene62816:CDS |
| GCTGACGTGTGCCGTGAACG+TGG | 0.619625 | 8.1:-21150979 | MS.gene62816:CDS |
| AAAGATCACCCGATATGAGA+AGG | 0.619965 | 8.1:-21150051 | MS.gene62816:CDS |
| TTCGAATTGGATCCCTTGGG+CGG | 0.621824 | 8.1:+21151173 | None:intergenic |
| GCAAACTCTGTACCGCCCAA+GGG | 0.622614 | 8.1:-21151185 | MS.gene62816:CDS |
| ACACACGTGTTTAATGCTGC+TGG | 0.626893 | 8.1:-21151087 | MS.gene62816:CDS |
| ATCTTTGTGATGAAATTGCG+AGG | 0.632297 | 8.1:+21150068 | None:intergenic |
| GGCCTCCTATCCAGCCGGTG+CGG | 0.634921 | 8.1:+21151214 | None:intergenic |
| GATCCAATTCGAATACGGGT+CGG | 0.635111 | 8.1:-21151163 | MS.gene62816:CDS |
| AAGTAACAATGAGCTTGATG+CGG | 0.635352 | 8.1:-21149811 | MS.gene62816:CDS |
| ATGTATGCACCTTGAGAGTG+AGG | 0.639312 | 8.1:-21150118 | MS.gene62816:CDS |
| TGAAACTATCCGTGCTAATG+TGG | 0.665772 | 8.1:-21151019 | MS.gene62816:CDS |
| GAGTCCCAACCACATTAGCA+CGG | 0.686328 | 8.1:+21151010 | None:intergenic |
| ACATTTGTAAGATTTCATTG+TGG | 0.688248 | 8.1:+21149913 | None:intergenic |
| AGTCTCACACCAGTCCACGT+TGG | 0.693140 | 8.1:+21151050 | None:intergenic |
| CACAGGTAGAGGATCTGCTG+AGG | 0.704068 | 8.1:-21150151 | MS.gene62816:intron |
| TGTTACGGGTCGACCCAACG+TGG | 0.704086 | 8.1:-21151064 | MS.gene62816:CDS |
| TGAAGTTCCAGATTCCAGTG+AGG | 0.720062 | 8.1:+21149955 | None:intergenic |
| TCTTTGTGATGAAATTGCGA+GGG | 0.720478 | 8.1:+21150069 | None:intergenic |
| CCGTATATGAGAAACTTGAG+GGG | 0.728448 | 8.1:+21151237 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATATAAAACAGATCTA+AGG | + | chr8.1:21150356-21150375 | None:intergenic | 15.0% |
| !! | ATATCAAACAAATCAAAACA+CGG | + | chr8.1:21150456-21150475 | None:intergenic | 20.0% |
| !! | TAAAAAGAACCAATGAAATT+AGG | + | chr8.1:21150133-21150152 | None:intergenic | 20.0% |
| !!! | ATTGTTATTAATTTTGCTAC+TGG | - | chr8.1:21150040-21150059 | MS.gene62816:CDS | 20.0% |
| !!! | TGTTTAAGATTGATGTTTTT+TGG | - | chr8.1:21150209-21150228 | MS.gene62816:intron | 20.0% |
| ! | ACATTAACAAAAAGAAAGCA+AGG | - | chr8.1:21150762-21150781 | MS.gene62816:intron | 25.0% |
| ! | ACATTTGTAAGATTTCATTG+TGG | + | chr8.1:21151082-21151101 | None:intergenic | 25.0% |
| ! | TTGGATAAATCAGATGAAAT+AGG | + | chr8.1:21150903-21150922 | None:intergenic | 25.0% |
| !! | AAAAACATTAGTCTCTTAAG+CGG | - | chr8.1:21150688-21150707 | MS.gene62816:intron | 25.0% |
| !! | CTTAAGAGACTAATGTTTTT+CGG | + | chr8.1:21150688-21150707 | None:intergenic | 25.0% |
| !! | TATGGTATGTTACATTGATT+TGG | - | chr8.1:21150168-21150187 | MS.gene62816:intron | 25.0% |
| !!! | ATGCTGATTTGTTGAATTAT+TGG | - | chr8.1:21150284-21150303 | MS.gene62816:intron | 25.0% |
| !!! | GATTTGTTGAATTATTGGTT+AGG | - | chr8.1:21150289-21150308 | MS.gene62816:intron | 25.0% |
| !!! | TTACTTTTATATGCAGTAGT+TGG | - | chr8.1:21150483-21150502 | MS.gene62816:intron | 25.0% |
| GAAGATACTCCTAATTTCAT+TGG | - | chr8.1:21150121-21150140 | MS.gene62816:CDS | 30.0% | |
| TAGTCATTCGTTTGTAACAT+TGG | + | chr8.1:21150634-21150653 | None:intergenic | 30.0% | |
| TATCTACAACCTTCTCATAT+CGG | + | chr8.1:21150953-21150972 | None:intergenic | 30.0% | |
| TATGATGATCTTCATCTTCT+TGG | - | chr8.1:21150076-21150095 | MS.gene62816:CDS | 30.0% | |
| TTAACAAAAAGAAAGCAAGG+TGG | - | chr8.1:21150765-21150784 | MS.gene62816:intron | 30.0% | |
| AAGTAACAATGAGCTTGATG+CGG | - | chr8.1:21151181-21151200 | MS.gene62816:CDS | 35.0% | |
| AATGTAACATACCATAGCCT+TGG | + | chr8.1:21150164-21150183 | None:intergenic | 35.0% | |
| ATCTACAACCTTCTCATATC+GGG | + | chr8.1:21150952-21150971 | None:intergenic | 35.0% | |
| ATCTTTGTGATGAAATTGCG+AGG | + | chr8.1:21150927-21150946 | None:intergenic | 35.0% | |
| GGGAAGAAGTTCATCTAAAA+TGG | + | chr8.1:21150991-21151010 | None:intergenic | 35.0% | |
| GTTACAAACGAATGACTACA+GGG | - | chr8.1:21150636-21150655 | MS.gene62816:intron | 35.0% | |
| GTTCACAAAAAAGGAACACA+AGG | + | chr8.1:21150822-21150841 | None:intergenic | 35.0% | |
| TAACAATAAGTCCACGTTCA+CGG | + | chr8.1:21150027-21150046 | None:intergenic | 35.0% | |
| TCCAGAACTATTGTCTATCA+AGG | - | chr8.1:21151223-21151242 | MS.gene62816:CDS | 35.0% | |
| TCCTTGATAGACAATAGTTC+TGG | + | chr8.1:21151227-21151246 | None:intergenic | 35.0% | |
| TCTACCTGTGTTCACAAAAA+AGG | + | chr8.1:21150831-21150850 | None:intergenic | 35.0% | |
| TCTTGAGAATCGATCTTCAT+TGG | - | chr8.1:21149856-21149875 | MS.gene62816:CDS | 35.0% | |
| TCTTTGTGATGAAATTGCGA+GGG | + | chr8.1:21150926-21150945 | None:intergenic | 35.0% | |
| TGTTACAAACGAATGACTAC+AGG | - | chr8.1:21150635-21150654 | MS.gene62816:intron | 35.0% | |
| TTCTTCCTTAAAACCAATCC+CGG | + | chr8.1:21150104-21150123 | None:intergenic | 35.0% | |
| TTTGCCATCTCAATTGAGAT+GGG | + | chr8.1:21151011-21151030 | None:intergenic | 35.0% | |
| ! | AAGCTCATTGTTACTTCTTG+GGG | + | chr8.1:21151177-21151196 | None:intergenic | 35.0% |
| ! | AGAAAGCAAGGTGGTATTTT+AGG | - | chr8.1:21150774-21150793 | MS.gene62816:intron | 35.0% |
| ! | CAAGCTCATTGTTACTTCTT+GGG | + | chr8.1:21151178-21151197 | None:intergenic | 35.0% |
| ! | CAAGCTTTAACCTTCTGATT+TGG | + | chr8.1:21151275-21151294 | None:intergenic | 35.0% |
| ! | TCAAGCTCATTGTTACTTCT+TGG | + | chr8.1:21151179-21151198 | None:intergenic | 35.0% |
| ! | TCTAAAATGGTCATCGAGTT+TGG | + | chr8.1:21150978-21150997 | None:intergenic | 35.0% |
| ! | TTCTTTTTACTCCAAGACCA+AGG | - | chr8.1:21150144-21150163 | MS.gene62816:CDS | 35.0% |
| !!! | TGTTCCTTTTTTGTGAACAC+AGG | - | chr8.1:21150824-21150843 | MS.gene62816:intron | 35.0% |
| !!! | TTTTTTGTGAACACAGGTAG+AGG | - | chr8.1:21150830-21150849 | MS.gene62816:intron | 35.0% |
| AAAGATCACCCGATATGAGA+AGG | - | chr8.1:21150941-21150960 | MS.gene62816:CDS | 40.0% | |
| AAGGGATCCAATTCGAATAC+GGG | - | chr8.1:21149825-21149844 | MS.gene62816:CDS | 40.0% | |
| AGTAACAATGAGCTTGATGC+GGG | - | chr8.1:21151182-21151201 | MS.gene62816:CDS | 40.0% | |
| ATCTTCATCTTCTTGGATCC+GGG | - | chr8.1:21150083-21150102 | MS.gene62816:CDS | 40.0% | |
| CAAGGGATCCAATTCGAATA+CGG | - | chr8.1:21149824-21149843 | MS.gene62816:CDS | 40.0% | |
| CCCCTCAAGTTTCTCATATA+CGG | - | chr8.1:21149755-21149774 | MS.gene62816:CDS | 40.0% | |
| CCGTATATGAGAAACTTGAG+GGG | + | chr8.1:21149758-21149777 | None:intergenic | 40.0% | |
| CTTTGCCATCTCAATTGAGA+TGG | + | chr8.1:21151012-21151031 | None:intergenic | 40.0% | |
| GATCTTCATCTTCTTGGATC+CGG | - | chr8.1:21150082-21150101 | MS.gene62816:CDS | 40.0% | |
| GCCGTATATGAGAAACTTGA+GGG | + | chr8.1:21149759-21149778 | None:intergenic | 40.0% | |
| GTATTCGAATTGGATCCCTT+GGG | + | chr8.1:21149825-21149844 | None:intergenic | 40.0% | |
| TCTTCCCATCTCAATTGAGA+TGG | - | chr8.1:21151004-21151023 | MS.gene62816:CDS | 40.0% | |
| TGAAACTATCCGTGCTAATG+TGG | - | chr8.1:21149973-21149992 | MS.gene62816:CDS | 40.0% | |
| TGATGCGGGAAAATTGAAGA+AGG | - | chr8.1:21151196-21151215 | MS.gene62816:CDS | 40.0% | |
| TGTCTTCAAGCCAAATCAGA+AGG | - | chr8.1:21151262-21151281 | MS.gene62816:CDS | 40.0% | |
| ! | ATCTGGAACTTCACAAATCC+TGG | - | chr8.1:21151047-21151066 | MS.gene62816:CDS | 40.0% |
| ! | GTTTAATGCTGCTGGTGTTA+CGG | - | chr8.1:21149913-21149932 | MS.gene62816:CDS | 40.0% |
| !! | ATATCGATTCAAGCTTCACC+TGG | - | chr8.1:21151111-21151130 | MS.gene62816:CDS | 40.0% |
| !! | TTTAATGCTGCTGGTGTTAC+GGG | - | chr8.1:21149914-21149933 | MS.gene62816:CDS | 40.0% |
| AATAGGCATCCTCACTCTCA+AGG | + | chr8.1:21150886-21150905 | None:intergenic | 45.0% | |
| ACACACGTGTTTAATGCTGC+TGG | - | chr8.1:21149905-21149924 | MS.gene62816:CDS | 45.0% | |
| ACTATCCGTGCTAATGTGGT+TGG | - | chr8.1:21149977-21149996 | MS.gene62816:CDS | 45.0% | |
| AGAGAAACCTCACTGGAATC+TGG | - | chr8.1:21151030-21151049 | MS.gene62816:CDS | 45.0% | |
| ATCCAATTCGAATACGGGTC+GGG | - | chr8.1:21149830-21149849 | MS.gene62816:CDS | 45.0% | |
| ATGGCAAAGAGAAACCTCAC+TGG | - | chr8.1:21151023-21151042 | MS.gene62816:CDS | 45.0% | |
| ATGTATGCACCTTGAGAGTG+AGG | - | chr8.1:21150874-21150893 | MS.gene62816:CDS | 45.0% | |
| CACTCTTGAGGAACAAGCTA+AGG | - | chr8.1:21151142-21151161 | MS.gene62816:CDS | 45.0% | |
| CGTATTCGAATTGGATCCCT+TGG | + | chr8.1:21149826-21149845 | None:intergenic | 45.0% | |
| CTATCCGTGCTAATGTGGTT+GGG | - | chr8.1:21149978-21149997 | MS.gene62816:CDS | 45.0% | |
| CTCAAGAGTGAAGTTCTTCC+AGG | + | chr8.1:21151132-21151151 | None:intergenic | 45.0% | |
| CTGGAAGAACTTCACTCTTG+AGG | - | chr8.1:21151130-21151149 | MS.gene62816:CDS | 45.0% | |
| GATCCAATTCGAATACGGGT+CGG | - | chr8.1:21149829-21149848 | MS.gene62816:CDS | 45.0% | |
| GCAGCATTAAACACGTGTGT+TGG | + | chr8.1:21149905-21149924 | None:intergenic | 45.0% | |
| GGCCGTATATGAGAAACTTG+AGG | + | chr8.1:21149760-21149779 | None:intergenic | 45.0% | |
| TCATTGTGGCTAACAACTCC+AGG | + | chr8.1:21151068-21151087 | None:intergenic | 45.0% | |
| TGAAGTTCCAGATTCCAGTG+AGG | + | chr8.1:21151040-21151059 | None:intergenic | 45.0% | |
| TGATCTTGATCCGACAACCA+AGG | + | chr8.1:21150514-21150533 | None:intergenic | 45.0% | |
| TGTGATGAAATTGCGAGGGT+TGG | + | chr8.1:21150922-21150941 | None:intergenic | 45.0% | |
| TTACTCCAAGACCAAGGCTA+TGG | - | chr8.1:21150150-21150169 | MS.gene62816:intron | 45.0% | |
| ! | ACATACCATAGCCTTGGTCT+TGG | + | chr8.1:21150158-21150177 | None:intergenic | 45.0% |
| ! | GTTGGAGTATCCTTGGTTGT+CGG | - | chr8.1:21150501-21150520 | MS.gene62816:intron | 45.0% |
| ! | TGCAGTAGTTGGAGTATCCT+TGG | - | chr8.1:21150494-21150513 | MS.gene62816:intron | 45.0% |
| !!! | TGGATCCGGGATTGGTTTTA+AGG | - | chr8.1:21150096-21150115 | MS.gene62816:CDS | 45.0% |
| CATCTTCTTGGATCCGGGAT+TGG | - | chr8.1:21150088-21150107 | MS.gene62816:CDS | 50.0% | |
| CGGTACAGAGTTTGCCTAAG+AGG | + | chr8.1:21149802-21149821 | None:intergenic | 50.0% | |
| GAGTCCCAACCACATTAGCA+CGG | + | chr8.1:21149985-21150004 | None:intergenic | 50.0% | |
| TTCGAATTGGATCCCTTGGG+CGG | + | chr8.1:21149822-21149841 | None:intergenic | 50.0% | |
| TTTCTCATATACGGCCGCAC+CGG | - | chr8.1:21149764-21149783 | MS.gene62816:CDS | 50.0% | |
| ! | GAGAAACTTGAGGGGAGTGT+CGG | + | chr8.1:21149750-21149769 | None:intergenic | 50.0% |
| AGTCTCACACCAGTCCACGT+TGG | + | chr8.1:21149945-21149964 | None:intergenic | 55.0% | |
| CACAGGTAGAGGATCTGCTG+AGG | - | chr8.1:21150841-21150860 | MS.gene62816:intron | 55.0% | |
| GACCCGACCCGTATTCGAAT+TGG | + | chr8.1:21149835-21149854 | None:intergenic | 55.0% | |
| GCAAACTCTGTACCGCCCAA+GGG | - | chr8.1:21149807-21149826 | MS.gene62816:CDS | 55.0% | |
| GTCTCACACCAGTCCACGTT+GGG | + | chr8.1:21149944-21149963 | None:intergenic | 55.0% | |
| TAAGAGGCCTCCTATCCAGC+CGG | + | chr8.1:21149786-21149805 | None:intergenic | 55.0% | |
| !! | AAACTTGAGGGGAGTGTCGG+AGG | + | chr8.1:21149747-21149766 | None:intergenic | 55.0% |
| GGCAAACTCTGTACCGCCCA+AGG | - | chr8.1:21149806-21149825 | MS.gene62816:CDS | 60.0% | |
| GGCTGGATAGGAGGCCTCTT+AGG | - | chr8.1:21149785-21149804 | MS.gene62816:CDS | 60.0% | |
| TGTTACGGGTCGACCCAACG+TGG | - | chr8.1:21149928-21149947 | MS.gene62816:CDS | 60.0% | |
| CGGAGGAGGAGGATGGTGCT+GGG | + | chr8.1:21149730-21149749 | None:intergenic | 65.0% | |
| GCTGACGTGTGCCGTGAACG+TGG | - | chr8.1:21150013-21150032 | MS.gene62816:CDS | 65.0% | |
| TCGGAGGAGGAGGATGGTGC+TGG | + | chr8.1:21149731-21149750 | None:intergenic | 65.0% | |
| ! | TCATATACGGCCGCACCGGC+TGG | - | chr8.1:21149768-21149787 | MS.gene62816:CDS | 65.0% |
| !! | CTTGAGGGGAGTGTCGGAGG+AGG | + | chr8.1:21149744-21149763 | None:intergenic | 65.0% |
| !! | GGAGTGTCGGAGGAGGAGGA+TGG | + | chr8.1:21149737-21149756 | None:intergenic | 65.0% |
| CGGGTCGACCCAACGTGGAC+TGG | - | chr8.1:21149933-21149952 | MS.gene62816:CDS | 70.0% | |
| GGCCTCCTATCCAGCCGGTG+CGG | + | chr8.1:21149781-21149800 | None:intergenic | 70.0% | |
| !! | GAGGGGAGTGTCGGAGGAGG+AGG | + | chr8.1:21149741-21149760 | None:intergenic | 70.0% |
| !! | TACGGCCGCACCGGCTGGAT+AGG | - | chr8.1:21149773-21149792 | MS.gene62816:CDS | 70.0% |
| !! | GGCCGCACCGGCTGGATAGG+AGG | - | chr8.1:21149776-21149795 | MS.gene62816:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21149719 | 21151295 | 21149719 | ID=MS.gene62816 |
| chr8.1 | mRNA | 21149719 | 21151295 | 21149719 | ID=MS.gene62816.t1;Parent=MS.gene62816 |
| chr8.1 | exon | 21150843 | 21151295 | 21150843 | ID=MS.gene62816.t1.exon1;Parent=MS.gene62816.t1 |
| chr8.1 | CDS | 21150843 | 21151295 | 21150843 | ID=cds.MS.gene62816.t1;Parent=MS.gene62816.t1 |
| chr8.1 | exon | 21149719 | 21150168 | 21149719 | ID=MS.gene62816.t1.exon2;Parent=MS.gene62816.t1 |
| chr8.1 | CDS | 21149719 | 21150168 | 21149719 | ID=cds.MS.gene62816.t1;Parent=MS.gene62816.t1 |
| Gene Sequence |
| Protein sequence |
