AlfalfaGEDB | MS.gene63146

M. sativa cultivar XinJiangDaYe / MS.gene63146

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63146.t1	XP_003628559.1	96.4	742	27	0	1	742	1	742	0.00E+00	1357.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63146.t1	G7LDS7	96.4	742	27	0	1	742	1	742	0.0e+00	1357.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050551	MS.gene63146	0.813105	3.03E-51	-1.69E-46
MS.gene055469	MS.gene63146	0.827091	1.89E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63146.t1	MTR_8g061890	96.361	742	27	0	1	742	1	742	0.0	1451

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63146.t1	AT1G05087	40.084	237	128	5	1	234	1	226	2.37e-46	166
MS.gene63146.t1	AT4G20720	40.084	237	128	5	1	234	1	226	1.12e-44	172
MS.gene63146.t1	AT4G20720	32.959	267	155	7	482	741	365	614	2.68e-18	89.7
MS.gene63146.t1	AT1G05090	31.835	267	158	6	482	741	149	398	5.37e-18	87.4

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Find 164 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAAAATTTCCCATC+TGG	0.357845	8.1:-43702566	None:intergenic
AAAATTGCAGAAAGTGCTGA+TGG	0.582149	8.1:+43702855	MS.gene63146:CDS
AAACCAAGATACCTGATACT+GGG	0.556746	8.1:+43702439	MS.gene63146:CDS
AAACTCAACGAACTTTCACC+CGG	0.588711	8.1:-43701877	None:intergenic
AAATCCAGTAGTTCAGATAA+AGG	0.400263	8.1:-43701790	None:intergenic
AAATTCAAAATTTCCCATCT+GGG	0.518806	8.1:-43702565	None:intergenic
AACAGGACAATTGATAATGT+TGG	0.551690	8.1:+43702687	MS.gene63146:CDS
AACATGCATCAAGCAGAACA+AGG	0.615366	8.1:+43701746	MS.gene63146:CDS
AACCAAGATACCTGATACTG+GGG	0.597183	8.1:+43702440	MS.gene63146:CDS
AACGGCAAGATAATGATAAC+AGG	0.441019	8.1:+43702670	MS.gene63146:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCAGTAGTTCAGATAA+AGG	-	chr8.1:43701793-43701812	None:intergenic	30.0%
AACTAAGATTCTCATTTGCT+TGG	-	chr8.1:43702014-43702033	None:intergenic	30.0%
AAGATGATTCATTTGATGCA+TGG	+	chr8.1:43702475-43702494	MS.gene63146:CDS	30.0%
ACTGTCAAGTAATTCAGATT+CGG	+	chr8.1:43701846-43701865	MS.gene63146:CDS	30.0%
ACTTCTAACTCAAAGATAGA+TGG	+	chr8.1:43702297-43702316	MS.gene63146:CDS	30.0%
ATGCAAAAAGAATGTGGTTA+TGG	+	chr8.1:43701442-43701461	MS.gene63146:intron	30.0%
ATGCATAATTGAATTCAACC+AGG	+	chr8.1:43703517-43703536	MS.gene63146:intron	30.0%
ATGCGATGTGATTGAAATTA+TGG	+	chr8.1:43701594-43701613	MS.gene63146:intron	30.0%
ATGCTAATAGTTCTTGTAAC+AGG	+	chr8.1:43702622-43702641	MS.gene63146:CDS	30.0%
ATTGTGATGCAAAAAGAATG+TGG	+	chr8.1:43701436-43701455	MS.gene63146:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	43700980	43704178	43700980	ID=MS.gene63146
chr8.1	mRNA	43700980	43704178	43700980	ID=MS.gene63146.t1;Parent=MS.gene63146
chr8.1	exon	43700980	43701309	43700980	ID=MS.gene63146.t1.exon1;Parent=MS.gene63146.t1
chr8.1	CDS	43700980	43701309	43700980	ID=cds.MS.gene63146.t1;Parent=MS.gene63146.t1
chr8.1	exon	43701721	43703471	43701721	ID=MS.gene63146.t1.exon2;Parent=MS.gene63146.t1
chr8.1	CDS	43701721	43703471	43701721	ID=cds.MS.gene63146.t1;Parent=MS.gene63146.t1
chr8.1	exon	43704031	43704178	43704031	ID=MS.gene63146.t1.exon3;Parent=MS.gene63146.t1
chr8.1	CDS	43704031	43704178	43704031	ID=cds.MS.gene63146.t1;Parent=MS.gene63146.t1

Gene Sequence

>MS.gene63146

ATGGCGTTCGAAATACCAATAGATCAAATAAAGCAGTTACAGATCCTTCTTCGCAAAGACGCCAATCTGTCATGGTACAATCCAGAAAATGACGAAAATCTCCCTCTCCCAAACCTCCCTTCCGTCGCAGAAACCGTCGCCAAACTCGATCCTTCGCCACCTTACCTTCGCTGTAAGATTTGCAATGGCAGACTCCTCCGCGGCGTTCAATCGTTTATCTGTGTCTTTTGTGGTGCAAATCCGCACAAAGATCTTCCTCCTGAAGCTATTAAATTTAAGAATACTGTTGGGTATCGTTGGTTGCTTGAATCTCTTCAACTTGATGGATCGGTATTGTTAATCTGACTATACTTTTTTGATTCGATTTCATTATTTTAAATTGAATGTACTTCCCTTGATGCTGGAAATTTGGAATTTTATGTGTTGTTTTGATATAATGTTCTTCATTTCTCCTTTATTGTGATGCAAAAAGAATGTGGTTATGGAAAGATTCAATTTTTTTTGTTCCAATTTGATTTATCAGATTGTGTGTATGTGTGTGTGGTTTGGATGGCTTTAAGTTGATGTTGTGGTCTCGGTTGTAGTTATGCTATGAACCTTTATATTGTGGTAAAATGCGATGTGATTGAAATTATGGTTGTGATGATGTTGCTGAGACATCAAAGTCTTTTAGATTGTGGCTGCAAATGCAATTTAAAACCATTTTGTACTGTTATGTTAACTCTGTGAATTGCTTTGCAGGAGATGGTGGCACCGACAGTGGAAGAACATGCATCAAGCAGAACAAGGAGTGAATTAAACGATGAGATTCCTTTATCTGAACTACTGGATTTGGAAATTCGATGGCCTTCTGAGGCGGAGAGAGCACTGTCAAGTAATTCAGATTCGGAAGCATTTCCGGGTGAAAGTTCGTTGAGTTTGTCTGGTGTTGATCTGGATAGTTTTTTTGATCGGAGAGAATCTGATTTCAATGTGTCTGAGCAGAATTCGGCTTTTGAAAGAAATGTAGGTGCTGCTTCAGATAACACTTTCCAAGCAAATGAGAATCTTAGTTTGTTCCAGAATTTCCAAGCTTCAGAAGCATCAGGAGGGTCTGTAGAGGATCAGAGTGGGGATTCCTTTTCGGGTTGGGAGGCCAATTTCAAATCTGCTAGTTCTGCTCCTGTTCACGAAGAGTCCAATTCAGTCGATCATTCTAAAGTTGAATTGGATACGGTATCTGGATATGTGAAAGATTCTGACGTTGTAAAGGAGAACGATGATTTCAATCCTTCAGCGTCCGGTGAAGATGATTGGTTTCAGGGTGATGAATTCCAAACTTCTAACTCAAAGATAGATGGCCAGCCTGGGAAGTCGGAAACGACCACGGATCTCTATCATACGGAAAAAGAAGAAATTGCTACTGGTTCGTCCACTAGGAATTTGGACTGGATGCAGGATGACCAATGGCAAGAGAGTGAAACCAAGATACCTGATACTGGGGCTACTGATGAAGAAGATGATTCATTTGATGCATGGAATGATTTTACTGGCTCAGCCGGCACACAAGACCCTTCTGGTATTATTTCCAGCCAAAACATTACTGCCCAGATGGGAAATTTTGAATTTTCTGCAGATCTGAGTGATACAAAAACAGCAGAGGATGCTAATAGTTCTTGTAACAGGGACTTTGACTGGATGGAAAATGATCAACGGCAAGATAATGATAACAGGACAATTGATAATGTTGGTACTGATGAAGGTTCTTATTCATTTGATTCATGGAATGATTTCACTGGCTCAGCCACTACACAATATCCTTCACATAGTGTTTCCAATTCAGAGATAACTGGCCAGACTGGGAAATTTGAAATGACTGAAGATCCTAATGATACAAAAATTGCAGAAAGTGCTGATGGTTCATCTAGTAATTTTGACTGGATGCAAAATGATCCATGGCAGGGGAGCAATAACAAGGAAACTGGTATTACGGCTACTAACGAAGTCACTGATTCATTTGATGCATGGAATGATTTTACTGGTTCAGCCTTTTCACAAAATCCTTCCAGTAGCGTTTCACACTCTGAGATAAAAGACCAGACTGGCATATCTGAAATTACTGCTGATCTTCATGATACCAAAACAGCAGAGGGTGCTAATGCTTCTTCTGTTAAAAGTTTTGACTGGATGCAAGGTGACCAATGGCAAGTTAGCAATAACAAAACAACCAATAGTGTGACTACTAACGATAATGCCGACCCATTTGATGTGTGGAGTGGCTTTACTAGCTTGACCACTAAACAAGAAGATCCTTTCAGTAACATTCCTGTACAAACTGTGAATCAAACTCCATCTGAAAAGACCTTTGAAATGGATTTATTTGGATCGTCAAACAACTCACATGATATGGATTTTAGTGGATTTTCACAGAATGATTTTTTAGGACAGTTTGATAATGCACCGAGTGCTCCTGCAGCAACCAATGGTCAACCTGCAGCTGCTACTTTAAACAGGTGCCTTGATATTATCGCAGTTGCATTATTTTATTGTAGAAAGATATGCATAATTGAATTCAACCAGGTCTTTTAGTATCAGATCAGATGGACATTAAGTCTATTTACAACATCTTTAGGAGTTTTAAGTTCAATATATCAGTCTACATTTAGTAGTAGTTGTATAATTCAATCAATGTAAGGGATATCTATAAATTTTATAGTAATGTGAGGAAACTGACACATCTAGGTAGTAGGTATAAGCCATTTTCATTTGCTGATGGTCCCAACTGCCAAGGGTATTTGTTTTAAATAAGGGTTCTATTTTGATGACAAGTTGAATAGGAATCTGACTGATGACAGAATTCACATTTCGTAGCATTGCATGTTATGAATCGAAAAGATATTTATTACTTGGAAGTTCTCCATTCTTTAAATGGCAATGCTTATGTTTTGCATTTTATCATTGATTCTCTGGTTATTTGATGTAGTTTTTGAACATTCCTACTAGCTAAATTTGATCTTGATTGACATTTTATAGTTTCATAAAGAAATTTATGCTATCTTGTTGCATGTTTAGGGTGGCTGATGATGATACCATGAGACAAAACCCTAGAGATGTTTCCACTGCAGAAGTAGGTTCAAAAGATGACGTAGAGATGTTGATGTCACAGATGCATGACCTCTCATTTATGCTTGAGAGCAATCTTTCATTTCCCCCAAAATGA

Protein sequence

>MS.gene63146.t1

MAFEIPIDQIKQLQILLRKDANLSWYNPENDENLPLPNLPSVAETVAKLDPSPPYLRCKICNGRLLRGVQSFICVFCGANPHKDLPPEAIKFKNTVGYRWLLESLQLDGSEMVAPTVEEHASSRTRSELNDEIPLSELLDLEIRWPSEAERALSSNSDSEAFPGESSLSLSGVDLDSFFDRRESDFNVSEQNSAFERNVGAASDNTFQANENLSLFQNFQASEASGGSVEDQSGDSFSGWEANFKSASSAPVHEESNSVDHSKVELDTVSGYVKDSDVVKENDDFNPSASGEDDWFQGDEFQTSNSKIDGQPGKSETTTDLYHTEKEEIATGSSTRNLDWMQDDQWQESETKIPDTGATDEEDDSFDAWNDFTGSAGTQDPSGIISSQNITAQMGNFEFSADLSDTKTAEDANSSCNRDFDWMENDQRQDNDNRTIDNVGTDEGSYSFDSWNDFTGSATTQYPSHSVSNSEITGQTGKFEMTEDPNDTKIAESADGSSSNFDWMQNDPWQGSNNKETGITATNEVTDSFDAWNDFTGSAFSQNPSSSVSHSEIKDQTGISEITADLHDTKTAEGANASSVKSFDWMQGDQWQVSNNKTTNSVTTNDNADPFDVWSGFTSLTTKQEDPFSNIPVQTVNQTPSEKTFEMDLFGSSNNSHDMDFSGFSQNDFLGQFDNAPSAPAATNGQPAAATLNRVADDDTMRQNPRDVSTAEVGSKDDVEMLMSQMHDLSFMLESNLSFPPK