AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055469


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAGTCTTAAAGAGAAAT+TGG 0.158453 5.1:-1846426 MS.gene055469:CDS
TAAGCTATCCATTGCCAATT+TGG 0.275956 5.1:+1846145 None:intergenic
GCTGTTCCTTTGCTTTCTTT+AGG 0.338674 5.1:+1847218 None:intergenic
GATGCTGGAGTAGCTTTGTT+AGG 0.349309 5.1:+1848117 None:intergenic
GGCGATTTCCTCTCAGCAAT+TGG 0.351711 5.1:+1847925 None:intergenic
AAACAAACTTATCAATGAAT+TGG 0.359829 5.1:-1846195 MS.gene055469:CDS
TAAAGAGAAATTGGGAATGT+TGG 0.380347 5.1:-1846417 MS.gene055469:CDS
GGTGAAGGCGACTCAGATTC+CGG 0.382732 5.1:+1848006 None:intergenic
TTTCTGCTCCCACTCTCCCT+TGG 0.387561 5.1:+1845902 None:intergenic
AGGAAGCAAATGAGAAACTT+AGG 0.390966 5.1:-1847129 MS.gene055469:CDS
TGAAGAAGAAAAGACCAAAT+TGG 0.391100 5.1:-1846159 MS.gene055469:CDS
AGCAAAGGAACAGCTGATTC+AGG 0.394668 5.1:-1847209 MS.gene055469:CDS
GGAATGTTGGAAATGACAAT+TGG 0.397432 5.1:-1846404 MS.gene055469:CDS
TCTAGTCTTAAAGAGAAATT+GGG 0.406330 5.1:-1846425 MS.gene055469:CDS
CTGCCGAGTTTACTAACTCT+TGG 0.411846 5.1:+1848042 None:intergenic
GTAGCTTTGTTAGGAGTAGC+TGG 0.429776 5.1:+1848126 None:intergenic
AGCTGGAGATGATGCTTTGT+TGG 0.434960 5.1:+1848143 None:intergenic
AGAGAAAGCGGAGATTCTTT+CGG 0.435111 5.1:-1846822 MS.gene055469:CDS
CCGAGCTGTTGAGCTGGAAC+AGG 0.436065 5.1:-1847053 MS.gene055469:CDS
GGCTGAACTGATACGTTTGA+AGG 0.460019 5.1:-1846801 MS.gene055469:CDS
GCTGGAGATGATGCTTTGTT+GGG 0.461900 5.1:+1848144 None:intergenic
CGGCAGAGGGGTATCTAAAC+CGG 0.463124 5.1:-1848025 MS.gene055469:CDS
GAATGTTGGAAATGACAATT+GGG 0.464612 5.1:-1846403 MS.gene055469:CDS
GAGATCTGCGTCATTGTCCT+TGG 0.467421 5.1:-1846510 MS.gene055469:CDS
TGTGAGGAACCAGCATGCTT+TGG 0.468644 5.1:-1846975 MS.gene055469:CDS
CGTCGGCATGACTCAGTGCC+TGG 0.471915 5.1:+1846873 None:intergenic
GAAGAAGAAAACTCGTCGTT+GGG 0.484970 5.1:-1845846 MS.gene055469:CDS
CGTAGCTTTCACGTTCAGCT+TGG 0.490817 5.1:+1846060 None:intergenic
TCTTAAGCAAGAACTTGAAA+AGG 0.495157 5.1:-1846702 MS.gene055469:CDS
TCAGCTGGTGTGGTAGGTCT+CGG 0.496925 5.1:+1847904 None:intergenic
TTTATTAACTGTCTCAATCT+CGG 0.498611 5.1:+1846286 None:intergenic
GCTTTCACGTTCAGCTTGGT+TGG 0.501551 5.1:+1846064 None:intergenic
GCGTTGTCTTCTCGCGGCTA+AGG 0.503627 5.1:-1846351 MS.gene055469:CDS
GCTAGATGAGTGCAGAATAA+AGG 0.504674 5.1:-1846576 MS.gene055469:CDS
TTACTCTAACTTACATCAGC+TGG 0.506928 5.1:+1847889 None:intergenic
GAAGTTCCGAGCTGTTGAGC+TGG 0.508758 5.1:-1847059 MS.gene055469:CDS
CTGTTTCGTTGCAGTTTCCA+AGG 0.514984 5.1:+1846493 None:intergenic
ACTGCAACGAAACAGCTAGA+AGG 0.517308 5.1:-1846485 MS.gene055469:CDS
GCTGTTGAGCTGGAACAGGC+TGG 0.518387 5.1:-1847049 MS.gene055469:CDS
AAAGGATTACGATGAAAAGT+TGG 0.519464 5.1:-1846678 MS.gene055469:CDS
TGAAGAAGAAAACTCGTCGT+TGG 0.523854 5.1:-1845847 MS.gene055469:CDS
TAGTATTGAAAATTCTAAGA+TGG 0.531285 5.1:-1845937 MS.gene055469:CDS
AATTGAAGCTGCTCAGAAGA+AGG 0.533018 5.1:-1847026 MS.gene055469:CDS
GGCTTTGAATTCAAAGATCG+TGG 0.543368 5.1:+1847946 None:intergenic
GGAAGCAAATGAGAAACTTA+GGG 0.544021 5.1:-1847128 MS.gene055469:CDS
CTTACATCAGCTGGTGTGGT+AGG 0.544278 5.1:+1847898 None:intergenic
TTTGATTGAACAGCTTAATG+TGG 0.546992 5.1:-1846642 MS.gene055469:CDS
GGTTGAGGAATTAGAAACAA+AGG 0.547465 5.1:-1846555 MS.gene055469:CDS
TTACTAACTCTTGGAGTAGC+CGG 0.550298 5.1:+1848051 None:intergenic
TGCTCTTCTCGCCACCACTC+AGG 0.550863 5.1:-1846945 MS.gene055469:CDS
ACTTTGCTGAGAGTTGATGC+TGG 0.554956 5.1:+1848102 None:intergenic
TCAGATTGAAGATTTAAAGT+CGG 0.558119 5.1:-1846033 MS.gene055469:CDS
TAGTGAAAACAATACTGTAT+TGG 0.560108 5.1:-1846747 MS.gene055469:CDS
AGCTGCTCAGAAGAAGGAAG+AGG 0.562975 5.1:-1847020 MS.gene055469:CDS
AGAAAAGACCAAATTGGCAA+TGG 0.563558 5.1:-1846153 MS.gene055469:CDS
GGAGTTTGAAGCTGCTAAGA+TGG 0.566983 5.1:-1846621 MS.gene055469:CDS
GGGCTTACTAGATTCAAAGC+TGG 0.570000 5.1:-1846780 MS.gene055469:CDS
ATGGATATTGTGAACTCCAA+GGG 0.570952 5.1:-1845918 MS.gene055469:CDS
GCTGAACTGATACGTTTGAA+GGG 0.571003 5.1:-1846800 MS.gene055469:CDS
GAGTTAGTAAACTCGGCAGA+GGG 0.572194 5.1:-1848038 MS.gene055469:CDS
TGAGACAGTTAATAAAGAGA+AGG 0.573086 5.1:-1846279 MS.gene055469:CDS
GCAAGAACTTGAAAAGGCAA+AGG 0.573713 5.1:-1846696 MS.gene055469:CDS
TTGTGAACTCCAAGGGAGAG+TGG 0.575595 5.1:-1845911 MS.gene055469:CDS
TGAGAAACTTAGGGAGGCAA+TGG 0.578916 5.1:-1847119 MS.gene055469:CDS
GATGGATATTGTGAACTCCA+AGG 0.579671 5.1:-1845919 MS.gene055469:CDS
GCAAACTTCACGCCTTTCTG+CGG 0.582741 5.1:-1847980 MS.gene055469:CDS
AACTCCAAACAAAACATCAC+CGG 0.584128 5.1:-1848070 MS.gene055469:CDS
CCTGTTCCAGCTCAACAGCT+CGG 0.591772 5.1:+1847053 None:intergenic
TGTGAACTCCAAGGGAGAGT+GGG 0.592754 5.1:-1845910 MS.gene055469:CDS
CTAACTTACATCAGCTGGTG+TGG 0.593067 5.1:+1847894 None:intergenic
AGAGTTAGTAAACTCGGCAG+AGG 0.593574 5.1:-1848039 MS.gene055469:CDS
TGAGTGCAGAATAAAGGTTG+AGG 0.594847 5.1:-1846570 MS.gene055469:CDS
CAGACACATCCAAAGCATGC+TGG 0.595358 5.1:+1846966 None:intergenic
CGTGAAGTTTGCAAAGGTGA+AGG 0.595493 5.1:+1847991 None:intergenic
GAAACTTAGGGAGGCAATGG+TGG 0.596777 5.1:-1847116 MS.gene055469:CDS
CTCAGAAGAAGGAAGAGGAA+TGG 0.599765 5.1:-1847015 MS.gene055469:CDS
ATGATGTGCATCATTAAGCA+TGG 0.600860 5.1:+1845980 None:intergenic
GACTTGTGATGCAAAGAACC+AGG 0.603818 5.1:-1846891 MS.gene055469:CDS
GAGGCAAAGAGGAGATCTTG+AGG 0.603943 5.1:-1846381 MS.gene055469:CDS
ATGACAATTGGGAGGCAAAG+AGG 0.605047 5.1:-1846392 MS.gene055469:CDS
ACTCCAAGAGTTAGTAAACT+CGG 0.607845 5.1:-1848045 MS.gene055469:CDS
AGAGAGAGCTTGAAAGTGTG+AGG 0.609297 5.1:-1846991 MS.gene055469:CDS
CTGGAGATGATGCTTTGTTG+GGG 0.612070 5.1:+1848145 None:intergenic
AGAAGACCTAAAGAAAGCAA+AGG 0.616162 5.1:-1847224 MS.gene055469:CDS
AGAAGCACAAAGATTGTCTG+AGG 0.617743 5.1:-1847149 MS.gene055469:CDS
AAAACTTTCAGCTTCAAGCG+TGG 0.619164 5.1:-1846237 MS.gene055469:CDS
GATTCAGGCTGAGAAAGAGA+AGG 0.627619 5.1:-1847194 MS.gene055469:CDS
TGAGCTTCATGTAGAGAAAG+CGG 0.632260 5.1:-1846834 MS.gene055469:CDS
TCGTTGAAGCTCCTGAGTGG+TGG 0.632686 5.1:+1846934 None:intergenic
AGATTCAAAGCTGGAAACCG+AGG 0.635398 5.1:-1846771 MS.gene055469:CDS
TTCAGAGCGTTGTCTTCTCG+CGG 0.647749 5.1:-1846357 MS.gene055469:CDS
GAAAGGCGTGAAGTTTGCAA+AGG 0.655727 5.1:+1847985 None:intergenic
AACTCGTTGAAGCTCCTGAG+TGG 0.663561 5.1:+1846931 None:intergenic
ATTCAAAGCCAATTGCTGAG+AGG 0.666551 5.1:-1847933 MS.gene055469:CDS
AGCAAATGAGAAACTTAGGG+AGG 0.687762 5.1:-1847125 MS.gene055469:CDS
TGTTGGAAATGACAATTGGG+AGG 0.697195 5.1:-1846400 MS.gene055469:CDS
AGTTAGTAAACTCGGCAGAG+GGG 0.711321 5.1:-1848037 MS.gene055469:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTAAACAAGTTTAA+TGG + chr5.1:1846683-1846702 None:intergenic 10.0%
!! AAACAAACTTATCAATGAAT+TGG - chr5.1:1847807-1847826 MS.gene055469:intron 20.0%
!!! GTAATATCATGAATTTTGAT+TGG - chr5.1:1846619-1846638 MS.gene055469:CDS 20.0%
!!! TAGTATTGAAAATTCTAAGA+TGG - chr5.1:1848065-1848084 MS.gene055469:CDS 20.0%
!!! TTTCTTTCCAAATTTGTTTT+TGG - chr5.1:1846206-1846225 MS.gene055469:CDS 20.0%
!!! TTTGTTTTTCTCTTCTAATA+GGG + chr5.1:1847794-1847813 None:intergenic 20.0%
! TAGTGAAAACAATACTGTAT+TGG - chr5.1:1847255-1847274 MS.gene055469:intron 25.0%
! TTTATTAACTGTCTCAATCT+CGG + chr5.1:1847719-1847738 None:intergenic 25.0%
!! AGTTGTTTGACAATTTTTCT+TGG - chr5.1:1846336-1846355 MS.gene055469:CDS 25.0%
!! TCAGATTGAAGATTTAAAGT+CGG - chr5.1:1847969-1847988 MS.gene055469:CDS 25.0%
!!! GTTTGTTTTTCTCTTCTAAT+AGG + chr5.1:1847795-1847814 None:intergenic 25.0%
!!! TCTAGTCTTAAAGAGAAATT+GGG - chr5.1:1847577-1847596 MS.gene055469:intron 25.0%
!!! TTCTAGTCTTAAAGAGAAAT+TGG - chr5.1:1847576-1847595 MS.gene055469:intron 25.0%
AAAGGATTACGATGAAAAGT+TGG - chr5.1:1847324-1847343 MS.gene055469:intron 30.0%
GAATGTTGGAAATGACAATT+GGG - chr5.1:1847599-1847618 MS.gene055469:intron 30.0%
GCAAAATGTTTGATTCTTGT+TGG + chr5.1:1846560-1846579 None:intergenic 30.0%
TAAAGAGAAATTGGGAATGT+TGG - chr5.1:1847585-1847604 MS.gene055469:intron 30.0%
TCTTAAGCAAGAACTTGAAA+AGG - chr5.1:1847300-1847319 MS.gene055469:intron 30.0%
TGAAGAAGAAAAGACCAAAT+TGG - chr5.1:1847843-1847862 MS.gene055469:intron 30.0%
TGAGACAGTTAATAAAGAGA+AGG - chr5.1:1847723-1847742 MS.gene055469:intron 30.0%
TTTGATTGAACAGCTTAATG+TGG - chr5.1:1847360-1847379 MS.gene055469:intron 30.0%
! GTTGGCTAATAGTTTTTCTT+TGG + chr5.1:1847923-1847942 None:intergenic 30.0%
! TACACTTTTCATGAGACAAT+TGG + chr5.1:1846250-1846269 None:intergenic 30.0%
!!! TCCAAATTTGTTTTTGGAAG+AGG - chr5.1:1846212-1846231 MS.gene055469:CDS 30.0%
!!! TTGCAGTTATTTTTACACTG+CGG - chr5.1:1846576-1846595 MS.gene055469:CDS 30.0%
AACTCCAAACAAAACATCAC+CGG - chr5.1:1845932-1845951 MS.gene055469:CDS 35.0%
ACTCCAAGAGTTAGTAAACT+CGG - chr5.1:1845957-1845976 MS.gene055469:CDS 35.0%
AGAAAAGACCAAATTGGCAA+TGG - chr5.1:1847849-1847868 MS.gene055469:intron 35.0%
AGAAGACCTAAAGAAAGCAA+AGG - chr5.1:1846778-1846797 MS.gene055469:CDS 35.0%
AGGAAGCAAATGAGAAACTT+AGG - chr5.1:1846873-1846892 MS.gene055469:CDS 35.0%
ATATTGTGAAAAGCAGCGTA+AGG - chr5.1:1846517-1846536 MS.gene055469:CDS 35.0%
ATGATGTGCATCATTAAGCA+TGG + chr5.1:1848025-1848044 None:intergenic 35.0%
ATGGATATTGTGAACTCCAA+GGG - chr5.1:1848084-1848103 MS.gene055469:CDS 35.0%
ATTCAACTGTGTCTGCAATT+CGG + chr5.1:1846750-1846769 None:intergenic 35.0%
GCCTCTTCCAAAAACAAATT+TGG + chr5.1:1846216-1846235 None:intergenic 35.0%
GGAAGCAAATGAGAAACTTA+GGG - chr5.1:1846874-1846893 MS.gene055469:CDS 35.0%
GGAATGTTGGAAATGACAAT+TGG - chr5.1:1847598-1847617 MS.gene055469:intron 35.0%
GGTTACAAAGTAGACTTATG+TGG - chr5.1:1846597-1846616 MS.gene055469:CDS 35.0%
GGTTGAGGAATTAGAAACAA+AGG - chr5.1:1847447-1847466 MS.gene055469:intron 35.0%
TAAGCTATCCATTGCCAATT+TGG + chr5.1:1847860-1847879 None:intergenic 35.0%
TTACTCTAACTTACATCAGC+TGG + chr5.1:1846116-1846135 None:intergenic 35.0%
! AAACATGGTCACACATTTTC+AGG + chr5.1:1846293-1846312 None:intergenic 35.0%
! AAGACCAACAGTCTAAAACA+TGG + chr5.1:1846308-1846327 None:intergenic 35.0%
!! AGTATTGTTTTCACTAGCCT+CGG + chr5.1:1847251-1847270 None:intergenic 35.0%
!! GCTGTGAAACTATTTTGAAG+CGG - chr5.1:1846647-1846666 MS.gene055469:CDS 35.0%
!! TTCTGAGATGTCCAATATGT+CGG - chr5.1:1846384-1846403 MS.gene055469:CDS 35.0%
!!! TGTTTTAGACTGTTGGTCTT+AGG - chr5.1:1846308-1846327 MS.gene055469:CDS 35.0%
AAAACTTTCAGCTTCAAGCG+TGG - chr5.1:1847765-1847784 MS.gene055469:intron 40.0%
AACTCGATCTCAGAGAAAGA+AGG + chr5.1:1846153-1846172 None:intergenic 40.0%
AACTCTTTGCAACAGCTCTT+GGG + chr5.1:1846727-1846746 None:intergenic 40.0%
AATTGAAGCTGCTCAGAAGA+AGG - chr5.1:1846976-1846995 MS.gene055469:CDS 40.0%
ACAGTTCACTACCGACATAT+TGG + chr5.1:1846398-1846417 None:intergenic 40.0%
AGAGAAAGCGGAGATTCTTT+CGG - chr5.1:1847180-1847199 MS.gene055469:CDS 40.0%
AGCAAATGAGAAACTTAGGG+AGG - chr5.1:1846877-1846896 MS.gene055469:CDS 40.0%
ATTCAAAGCCAATTGCTGAG+AGG - chr5.1:1846069-1846088 MS.gene055469:CDS 40.0%
GAAGAAGAAAACTCGTCGTT+GGG - chr5.1:1848156-1848175 MS.gene055469:CDS 40.0%
GATGGATATTGTGAACTCCA+AGG - chr5.1:1848083-1848102 MS.gene055469:CDS 40.0%
GCAAGAACTTGAAAAGGCAA+AGG - chr5.1:1847306-1847325 MS.gene055469:intron 40.0%
GCTAGATGAGTGCAGAATAA+AGG - chr5.1:1847426-1847445 MS.gene055469:intron 40.0%
GCTGAACTGATACGTTTGAA+GGG - chr5.1:1847202-1847221 MS.gene055469:CDS 40.0%
GCTGTTCCTTTGCTTTCTTT+AGG + chr5.1:1846787-1846806 None:intergenic 40.0%
TGAAGAAGAAAACTCGTCGT+TGG - chr5.1:1848155-1848174 MS.gene055469:CDS 40.0%
TGAGCTTCATGTAGAGAAAG+CGG - chr5.1:1847168-1847187 MS.gene055469:CDS 40.0%
TGAGTGCAGAATAAAGGTTG+AGG - chr5.1:1847432-1847451 MS.gene055469:intron 40.0%
TGTTGGAAATGACAATTGGG+AGG - chr5.1:1847602-1847621 MS.gene055469:intron 40.0%
TTACTAACTCTTGGAGTAGC+CGG + chr5.1:1845954-1845973 None:intergenic 40.0%
! AGAAGCACAAAGATTGTCTG+AGG - chr5.1:1846853-1846872 MS.gene055469:CDS 40.0%
!! CTCTGAGATCGAGTTATGTT+TGG - chr5.1:1846158-1846177 MS.gene055469:CDS 40.0%
!! GGCTTTGAATTCAAAGATCG+TGG + chr5.1:1846059-1846078 None:intergenic 40.0%
!! GTGACCATGTTTTAGACTGT+TGG - chr5.1:1846301-1846320 MS.gene055469:CDS 40.0%
!! GTTTGGCTTGATTAGACAGT+TGG - chr5.1:1846175-1846194 MS.gene055469:CDS 40.0%
!!! AGCAATTTTAGCTGCATCGT+CGG + chr5.1:1847149-1847168 None:intergenic 40.0%
!!! GATGTTTTGTTTGGAGTTGC+TGG + chr5.1:1845930-1845949 None:intergenic 40.0%
ACTCTTTGCAACAGCTCTTG+GGG + chr5.1:1846726-1846745 None:intergenic 45.0%
ACTGCAACGAAACAGCTAGA+AGG - chr5.1:1847517-1847536 MS.gene055469:intron 45.0%
AGAGTTAGTAAACTCGGCAG+AGG - chr5.1:1845963-1845982 MS.gene055469:CDS 45.0%
AGATTCAAAGCTGGAAACCG+AGG - chr5.1:1847231-1847250 MS.gene055469:CDS 45.0%
AGCTGGAGATGATGCTTTGT+TGG + chr5.1:1845862-1845881 None:intergenic 45.0%
AGTTAGTAAACTCGGCAGAG+GGG - chr5.1:1845965-1845984 MS.gene055469:CDS 45.0%
ATGACAATTGGGAGGCAAAG+AGG - chr5.1:1847610-1847629 MS.gene055469:intron 45.0%
CGTGAAGTTTGCAAAGGTGA+AGG + chr5.1:1846014-1846033 None:intergenic 45.0%
CTAACTTACATCAGCTGGTG+TGG + chr5.1:1846111-1846130 None:intergenic 45.0%
CTCAGAAGAAGGAAGAGGAA+TGG - chr5.1:1846987-1847006 MS.gene055469:CDS 45.0%
CTGCCGAGTTTACTAACTCT+TGG + chr5.1:1845963-1845982 None:intergenic 45.0%
CTGTTTCGTTGCAGTTTCCA+AGG + chr5.1:1847512-1847531 None:intergenic 45.0%
GAACTCTTTGCAACAGCTCT+TGG + chr5.1:1846728-1846747 None:intergenic 45.0%
GACTTGTGATGCAAAGAACC+AGG - chr5.1:1847111-1847130 MS.gene055469:CDS 45.0%
GAGTTAGTAAACTCGGCAGA+GGG - chr5.1:1845964-1845983 MS.gene055469:CDS 45.0%
GATTCAGGCTGAGAAAGAGA+AGG - chr5.1:1846808-1846827 MS.gene055469:CDS 45.0%
GGCTGAACTGATACGTTTGA+AGG - chr5.1:1847201-1847220 MS.gene055469:CDS 45.0%
GGGCTTACTAGATTCAAAGC+TGG - chr5.1:1847222-1847241 MS.gene055469:CDS 45.0%
TGAGAAACTTAGGGAGGCAA+TGG - chr5.1:1846883-1846902 MS.gene055469:CDS 45.0%
! AGAGAGAGCTTGAAAGTGTG+AGG - chr5.1:1847011-1847030 MS.gene055469:CDS 45.0%
! AGCAAAGGAACAGCTGATTC+AGG - chr5.1:1846793-1846812 MS.gene055469:CDS 45.0%
! CTGGAGATGATGCTTTGTTG+GGG + chr5.1:1845860-1845879 None:intergenic 45.0%
! GAAAGGCGTGAAGTTTGCAA+AGG + chr5.1:1846020-1846039 None:intergenic 45.0%
! GCTGGAGATGATGCTTTGTT+GGG + chr5.1:1845861-1845880 None:intergenic 45.0%
! GGAGTTTGAAGCTGCTAAGA+TGG - chr5.1:1847381-1847400 MS.gene055469:intron 45.0%
!! ACTTTGCTGAGAGTTGATGC+TGG + chr5.1:1845903-1845922 None:intergenic 45.0%
!! GATGCTGGAGTAGCTTTGTT+AGG + chr5.1:1845888-1845907 None:intergenic 45.0%
!! GCTGCAGTCATGCTTTTTGT+TGG - chr5.1:1846469-1846488 MS.gene055469:CDS 45.0%
!! GTAGCCGGTGATGTTTTGTT+TGG + chr5.1:1845939-1845958 None:intergenic 45.0%
!! GTAGCTTTGTTAGGAGTAGC+TGG + chr5.1:1845879-1845898 None:intergenic 45.0%
!!! GTTTTGTTTGGAGTTGCTGG+TGG + chr5.1:1845927-1845946 None:intergenic 45.0%
AACTCGTTGAAGCTCCTGAG+TGG + chr5.1:1847074-1847093 None:intergenic 50.0%
AGCTGCTCAGAAGAAGGAAG+AGG - chr5.1:1846982-1847001 MS.gene055469:CDS 50.0%
CAGACACATCCAAAGCATGC+TGG + chr5.1:1847039-1847058 None:intergenic 50.0%
CGTAGCTTTCACGTTCAGCT+TGG + chr5.1:1847945-1847964 None:intergenic 50.0%
CTTACATCAGCTGGTGTGGT+AGG + chr5.1:1846107-1846126 None:intergenic 50.0%
GAAACTTAGGGAGGCAATGG+TGG - chr5.1:1846886-1846905 MS.gene055469:CDS 50.0%
GAGATCTGCGTCATTGTCCT+TGG - chr5.1:1847492-1847511 MS.gene055469:intron 50.0%
GAGGCAAAGAGGAGATCTTG+AGG - chr5.1:1847621-1847640 MS.gene055469:intron 50.0%
GCAAACTTCACGCCTTTCTG+CGG - chr5.1:1846022-1846041 MS.gene055469:CDS 50.0%
GCTTTCACGTTCAGCTTGGT+TGG + chr5.1:1847941-1847960 None:intergenic 50.0%
GGCGATTTCCTCTCAGCAAT+TGG + chr5.1:1846080-1846099 None:intergenic 50.0%
TGTGAACTCCAAGGGAGAGT+GGG - chr5.1:1848092-1848111 MS.gene055469:CDS 50.0%
TGTGAGGAACCAGCATGCTT+TGG - chr5.1:1847027-1847046 MS.gene055469:CDS 50.0%
TTGTGAACTCCAAGGGAGAG+TGG - chr5.1:1848091-1848110 MS.gene055469:CDS 50.0%
!! TTCAGAGCGTTGTCTTCTCG+CGG - chr5.1:1847645-1847664 MS.gene055469:intron 50.0%
!!! GCGATGCTTTTTCCGCAGAA+AGG + chr5.1:1846037-1846056 None:intergenic 50.0%
CCTGTTCCAGCTCAACAGCT+CGG + chr5.1:1846952-1846971 None:intergenic 55.0%
GAAGTTCCGAGCTGTTGAGC+TGG - chr5.1:1846943-1846962 MS.gene055469:CDS 55.0%
GGTGAAGGCGACTCAGATTC+CGG + chr5.1:1845999-1846018 None:intergenic 55.0%
TCAGCTGGTGTGGTAGGTCT+CGG + chr5.1:1846101-1846120 None:intergenic 55.0%
TCGTTGAAGCTCCTGAGTGG+TGG + chr5.1:1847071-1847090 None:intergenic 55.0%
TTTCTGCTCCCACTCTCCCT+TGG + chr5.1:1848103-1848122 None:intergenic 55.0%
!! CGGCAGAGGGGTATCTAAAC+CGG - chr5.1:1845977-1845996 MS.gene055469:CDS 55.0%
CCGAGCTGTTGAGCTGGAAC+AGG - chr5.1:1846949-1846968 MS.gene055469:CDS 60.0%
GCGTTGTCTTCTCGCGGCTA+AGG - chr5.1:1847651-1847670 MS.gene055469:intron 60.0%
GCTGTTGAGCTGGAACAGGC+TGG - chr5.1:1846953-1846972 MS.gene055469:CDS 60.0%
TGCTCTTCTCGCCACCACTC+AGG - chr5.1:1847057-1847076 MS.gene055469:CDS 60.0%
CGTCGGCATGACTCAGTGCC+TGG + chr5.1:1847132-1847151 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1845836 1848188 1845836 ID=MS.gene055469
chr5.1 mRNA 1845836 1848188 1845836 ID=MS.gene055469.t1;Parent=MS.gene055469
chr5.1 exon 1847903 1848188 1847903 ID=MS.gene055469.t1.exon1;Parent=MS.gene055469.t1
chr5.1 CDS 1847903 1848188 1847903 ID=cds.MS.gene055469.t1;Parent=MS.gene055469.t1
chr5.1 exon 1845836 1847266 1845836 ID=MS.gene055469.t1.exon2;Parent=MS.gene055469.t1
chr5.1 CDS 1845836 1847266 1845836 ID=cds.MS.gene055469.t1;Parent=MS.gene055469.t1
Gene Sequence

>MS.gene055469

ATCTGGTTTATCTGAAACACTCCCCAACAAAGCATCATCTCCAGCTACTCCTAACAAAGCTACTCCAGCATCAACTCTCAGCAAAGTACCACCAGCAACTCCAAACAAAACATCACCGGCTACTCCAAGAGTTAGTAAACTCGGCAGAGGGGTATCTAAACCGGAATCTGAGTCGCCTTCACCTTTGCAAACTTCACGCCTTTCTGCGGAAAAAGCATCGCCACGATCTTTGAATTCAAAGCCAATTGCTGAGAGGAAATCGCCGAGACCTACCACACCAGCTGATGTAAGTTAGAGTAAATACACATTGTGTTCCTTCTTTCTCTGAGATCGAGTTATGTTTGGCTTGATTAGACAGTTGGACTTTTTTTTTCTTTCCAAATTTGTTTTTGGAAGAGGCATTTGAACTTTCCAATTGTCTCATGAAAAGTGTAAAAATAATAATAATTAAACACCTGAAAATGTGTGACCATGTTTTAGACTGTTGGTCTTAGGATGCTAGTTGTTTGACAATTTTTCTTGGATTATCATTAGCTTCTTATTTGTTATTCTGAGATGTCCAATATGTCGGTAGTGAACTGTCAGCTATGTATCGTTAATTAAGCGTGCTAATTGATACATGAAAAAATAACTGCTGCAGTCATGCTTTTTGTTGGTTATCTGTACTCTGATATGTGTTTAATATTGTGAAAAGCAGCGTAAGGTAGTTTTACATTGATGTCCAACAAGAATCAAACATTTTGCAGTTATTTTTACACTGCGGTTACAAAGTAGACTTATGTGGTAATATCATGAATTTTGATTGGATATCGCTGTGAAACTATTTTGAAGCGGCAGTGCATCTCCATTAAACTTGTTTAATATTTTCTGTATATTTCAGAAGCATACCCCAAGAGCTGTTGCAAAGAGTTCCGAATTGCAGACACAGTTGAATGTCGCTCAAGAAGACCTAAAGAAAGCAAAGGAACAGCTGATTCAGGCTGAGAAAGAGAAGGAAAAAGCAATAAATGAGCTGAAAGAAGCACAAAGATTGTCTGAGGAAGCAAATGAGAAACTTAGGGAGGCAATGGTGGCTCAAAAGCGTGCTGAAGATGATTCTGAGATTGAGAAGTTCCGAGCTGTTGAGCTGGAACAGGCTGGAATTGAAGCTGCTCAGAAGAAGGAAGAGGAATGGCAGAGAGAGCTTGAAAGTGTGAGGAACCAGCATGCTTTGGATGTGTCTGCTCTTCTCGCCACCACTCAGGAGCTTCAACGAGTTAAGCAAGAACTTGTAATGACTTGTGATGCAAAGAACCAGGCACTGAGTCATGCCGACGATGCAGCTAAAATTGCTGAGCTTCATGTAGAGAAAGCGGAGATTCTTTCGGCTGAACTGATACGTTTGAAGGGCTTACTAGATTCAAAGCTGGAAACCGAGGCTAGTGAAAACAATACTGTATTGGAGCTGCAAAAAGAGATTGAAGCTCTTAAGCAAGAACTTGAAAAGGCAAAGGATTACGATGAAAAGTTGGCAGAGAAAGAGAATTTGATTGAACAGCTTAATGTGGAGTTTGAAGCTGCTAAGATGGCTGAATCTTATGCGCGTAGTGTGCTAGATGAGTGCAGAATAAAGGTTGAGGAATTAGAAACAAAGGTTGAAGAAGCAAATCAGTTAGAGAGATCTGCGTCATTGTCCTTGGAAACTGCAACGAAACAGCTAGAAGGAAAAAATGAACTGCTGCATGATGCAGAATCTGAAATTTCTAGTCTTAAAGAGAAATTGGGAATGTTGGAAATGACAATTGGGAGGCAAAGAGGAGATCTTGAGGATTCAGAGCGTTGTCTTCTCGCGGCTAAGGAAGAAAATATTGAAATGTCGAAGAAGATTGAATCTCTTGAGTCCGAGATTGAGACAGTTAATAAAGAGAAGGCTCAAGCTTTGAACAATGAAAAACTTTCAGCTTCAAGCGTGGAAACCCTATTAGAAGAGAAAAACAAACTTATCAATGAATTGGAGATTTGTAGAGATGAAGAAGAAAAGACCAAATTGGCAATGGATAGCTTAGCTTCTGCGTTACATGAAGTATCTGCAGAAGCTAGAGATACCAAAGAAAAACTATTAGCCAACCAAGCTGAACGTGAAAGCTACGTGACTCAGATTGAAGATTTAAAGTCGGATTTAGAAGCTAGCAAAGAAAAATATGAGTCCATGCTTAATGATGCACATCATGAGATTGATGTTCTTACATCTAGTATTGAAAATTCTAAGATGGATATTGTGAACTCCAAGGGAGAGTGGGAGCAGAAAGAACATGATCTTGTCGAGTGCATAAAGAGAACTGAAGAAGAAAACTCGTCGTTGGGAATGAAATAA

Protein sequence

>MS.gene055469.t1

IWFIUNTPQQSIISSYSUQSYSSINSQQSTTSNSKQNITGYSKSUUTRQRGIUTGIUVAFTFANFTPFCGKSIATIFEFKANCUEEIAETYHTSUYTVECRSRRPKESKGTADSGUEREGKSNKUAERSTKIVUGSKUETUGGNGGSKACURUFUDUEVPSCUAGTGWNUSCSEEGRGMAERAUKCEEPACFGCVCSSRHHSGASTSUARTCNDLUCKEPGTESCRRCSUNCUASCRESGDSFGUTDTFEGLTRFKAGNRGUUKQYCIGAAKRDUSSUARTUKGKGLRUKVGREREFDUTAUCGVUSCUDGUILCAUCARUVQNKGUGIRNKGURSKSVREICVIVLGNCNETARRKKUTAAUCRIUNFUSUREIGNVGNDNWEAKRRSUGFRALSSRGUGRKYUNVEEDUISUVRDUDSUUREGSSFEQUKTFSFKRGNPIRREKQTYQUIGDLURURRKDQIGNGULSFCVTUSICRSURYQRKTISQPSUTUKLRDSDURFKVGFRSUQRKIUVHAUUCTSUDUCSYIUYUKFUDGYCELQGRVGAERTUSCRVHKENURRKLVVGNEI