AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63172.t1 MTR_8g469430 89.003 291 24 3 1 288 1 286 3.10e-175 485
MS.gene63172.t1 MTR_5g038280 54.192 334 97 11 1 288 1 324 7.83e-100 295
MS.gene63172.t1 MTR_4g107650 40.964 332 134 9 10 288 15 337 1.65e-54 180
MS.gene63172.t1 MTR_6g007647 68.687 99 31 0 89 187 31 129 1.75e-40 141
MS.gene63172.t1 MTR_6g007647 50.000 152 72 1 40 187 12 163 2.91e-40 141
MS.gene63172.t1 MTR_8g089895 46.386 166 66 4 83 228 45 207 9.06e-38 135
MS.gene63172.t1 MTR_3g086790 57.895 114 48 0 87 200 56 169 2.43e-36 132
MS.gene63172.t1 MTR_5g039000 53.788 132 58 2 56 186 43 172 4.42e-35 128
MS.gene63172.t1 MTR_8g468210 63.542 96 35 0 91 186 77 172 1.28e-34 127
MS.gene63172.t1 MTR_3g080100 55.462 119 50 1 91 209 20 135 1.58e-34 124
MS.gene63172.t1 MTR_3g080100 55.462 119 50 1 91 209 59 174 2.70e-34 125
MS.gene63172.t1 MTR_6g011610 60.714 112 43 1 76 186 80 191 4.73e-34 125
MS.gene63172.t1 MTR_6g011610 60.714 112 43 1 76 186 61 172 4.77e-34 124
MS.gene63172.t1 MTR_7g010020 50.427 117 55 1 70 186 62 175 8.04e-26 103
MS.gene63172.t1 MTR_8g026960 37.640 178 88 6 95 266 38 198 1.80e-24 99.0
MS.gene63172.t1 MTR_7g103340 51.546 97 40 1 91 187 63 152 2.08e-24 98.6
MS.gene63172.t1 MTR_1g061660 51.546 97 40 1 91 187 59 148 1.72e-23 96.3
MS.gene63172.t1 MTR_3g092150 38.068 176 89 4 93 262 40 201 2.15e-23 96.3
MS.gene63172.t1 MTR_5g019680 58.571 70 29 0 91 160 53 122 4.61e-19 83.6
MS.gene63172.t1 MTR_5g019650 58.571 70 29 0 91 160 53 122 1.55e-18 82.4
MS.gene63172.t1 MTR_4g100550 42.982 114 54 2 71 184 104 206 7.44e-18 82.0
MS.gene63172.t1 MTR_4g126900 47.253 91 41 1 94 184 91 174 1.05e-17 80.1
MS.gene63172.t1 MTR_7g093430 39.850 133 60 4 54 184 132 246 1.24e-16 78.6
MS.gene63172.t1 MTR_5g014890 42.342 111 50 2 74 184 113 209 1.76e-16 77.8
MS.gene63172.t1 MTR_1g017090 46.875 96 44 1 89 184 128 216 4.74e-16 77.0
MS.gene63172.t1 MTR_1g054285 43.519 108 49 2 77 184 145 240 8.79e-16 76.3
MS.gene63172.t1 MTR_5g013010 44.860 107 48 2 78 184 127 222 2.01e-15 75.1
MS.gene63172.t1 MTR_4g084750 43.750 96 47 1 89 184 63 151 2.11e-15 73.6
MS.gene63172.t1 MTR_4g097600 43.519 108 51 2 77 184 116 213 2.18e-15 74.7
MS.gene63172.t1 MTR_2g061030 38.333 120 65 2 65 184 176 286 3.62e-15 75.1
MS.gene63172.t1 MTR_8g006705 45.745 94 44 1 91 184 146 232 1.51e-14 72.8
MS.gene63172.t1 MTR_3g103590 50.000 72 36 0 91 162 145 216 3.01e-13 68.9
MS.gene63172.t1 MTR_2g038625 41.489 94 48 1 91 184 82 168 7.65e-12 63.9
MS.gene63172.t1 MTR_2g038580 41.489 94 48 1 91 184 82 168 7.65e-12 63.9
MS.gene63172.t1 MTR_5g013010 50.000 66 29 1 78 143 127 188 9.94e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63172.t1 AT3G01470 61.682 107 41 0 89 195 66 172 7.30e-40 140
MS.gene63172.t1 AT4G40060 49.660 147 65 3 80 220 45 188 6.24e-37 133
MS.gene63172.t1 AT2G22430 64.948 97 34 0 91 187 62 158 1.21e-35 130
MS.gene63172.t1 AT1G69780 56.410 117 50 1 71 186 64 180 1.29e-34 127
MS.gene63172.t1 AT5G15150 63.542 96 35 0 91 186 115 210 1.53e-34 127
MS.gene63172.t1 AT5G65310 63.918 97 35 0 91 187 54 150 2.56e-34 126
MS.gene63172.t1 AT5G65310 63.918 97 35 0 91 187 72 168 2.78e-34 127
MS.gene63172.t1 AT1G27045 55.263 114 49 1 74 187 10 121 1.41e-31 116
MS.gene63172.t1 AT1G27045 55.263 114 49 1 74 187 10 121 1.41e-31 116
MS.gene63172.t1 AT1G27045 55.263 114 49 1 74 187 2 113 1.77e-31 115
MS.gene63172.t1 AT1G27045 51.538 130 57 2 74 203 53 176 2.67e-31 116
MS.gene63172.t1 AT3G01220 52.101 119 53 1 91 209 87 201 3.50e-31 118
MS.gene63172.t1 AT1G27045 56.075 107 45 1 74 180 53 157 1.39e-29 112
MS.gene63172.t1 AT1G26960 52.174 115 54 1 73 186 52 166 4.60e-28 108
MS.gene63172.t1 AT2G46680 48.182 110 57 0 85 194 26 135 1.25e-25 102
MS.gene63172.t1 AT2G46680 50.515 97 48 0 85 181 26 122 2.54e-24 99.0
MS.gene63172.t1 AT3G61890 50.495 101 49 1 94 194 33 132 4.02e-24 98.2
MS.gene63172.t1 AT4G36740 48.182 110 50 1 91 200 55 157 5.06e-23 94.7
MS.gene63172.t1 AT4G36740 48.182 110 50 1 91 200 56 158 5.17e-23 94.7
MS.gene63172.t1 AT5G03790 54.023 87 40 0 91 177 77 163 8.21e-23 94.4
MS.gene63172.t1 AT5G03790 59.722 72 29 0 91 162 77 148 6.77e-22 90.9
MS.gene63172.t1 AT2G36610 46.667 105 41 2 88 184 68 165 2.75e-21 89.4
MS.gene63172.t1 AT5G66700 58.571 70 29 0 91 160 71 140 6.38e-21 89.4
MS.gene63172.t1 AT2G18550 45.455 110 53 1 91 200 61 163 6.53e-21 89.0
MS.gene63172.t1 AT4G37790 43.750 112 51 2 73 184 113 212 8.63e-18 81.6
MS.gene63172.t1 AT5G06710 38.298 141 64 3 55 184 148 276 1.86e-17 81.6
MS.gene63172.t1 AT5G53980 41.837 98 57 0 91 188 11 108 3.64e-17 77.4
MS.gene63172.t1 AT2G01430 40.541 111 59 1 74 184 122 225 1.82e-15 75.1
MS.gene63172.t1 AT5G47370 41.284 109 53 2 76 184 119 216 5.42e-15 73.9
MS.gene63172.t1 AT2G22800 45.745 94 44 1 91 184 113 199 9.15e-15 73.2
MS.gene63172.t1 AT4G17460 37.302 126 69 3 66 190 112 228 1.01e-14 73.2
MS.gene63172.t1 AT3G60390 41.593 113 56 2 72 184 146 248 1.07e-14 73.6
MS.gene63172.t1 AT2G44910 45.745 94 44 1 91 184 163 249 1.11e-14 73.6
MS.gene63172.t1 AT4G16780 39.200 125 54 3 68 184 105 215 1.24e-14 72.8
MS.gene63172.t1 AT5G06710 40.000 100 44 2 55 143 148 242 7.78e-13 67.8
MS.gene63172.t1 AT2G01430 45.714 70 38 0 74 143 122 191 4.13e-12 64.7
MS.gene63172.t1 AT1G70920 40.594 101 50 2 76 169 27 124 3.64e-11 61.2
MS.gene63172.t1 AT1G70920 42.553 94 47 1 91 184 69 155 4.04e-11 61.6

Find 41 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCTTGCTCTCCTATTT+TGG 0.157164 8.4:+40727013 None:intergenic
GCAAGTTGAACTTTCCTTCC+AGG 0.262711 8.4:+40727078 None:intergenic
CATCCAACATCTTCAACTTT+AGG 0.279222 8.4:+40726051 None:intergenic
TGGCTATATGGTTCCAAAAT+AGG 0.286402 8.4:-40727026 MS.gene63172:CDS
ATGGAACAGTCAAGAGGTTT+TGG 0.294494 8.4:+40726079 None:intergenic
GGATTCAGGTTCCAATTCTA+TGG 0.296135 8.4:-40727301 MS.gene63172:intron
CACAACATCAACCATAGAAT+TGG 0.343400 8.4:+40727290 None:intergenic
TTTCAAGAAAATGAACTTGT+TGG 0.363914 8.4:+40727130 None:intergenic
AGCCAAGACAAGTGGCTATA+TGG 0.377381 8.4:-40727038 MS.gene63172:CDS
TGAGCTCGTCAACTCTCTCT+TGG 0.402549 8.4:-40727890 MS.gene63172:CDS
TGTGAAAATTCTGACTGGTT+TGG 0.408830 8.4:+40726123 None:intergenic
CTGGTTTGGTTCCACAACTA+AGG 0.419648 8.4:+40726137 None:intergenic
ATGGTTGATGTTGTGAATGT+TGG 0.424290 8.4:-40727282 MS.gene63172:CDS
TCTTCAACTTTAGGTATGAA+TGG 0.429614 8.4:+40726060 None:intergenic
TATTTCTCTCAAGAAAAGAT+TGG 0.446084 8.4:-40726277 MS.gene63172:CDS
GGTTTCCATCAGTGTTCTGT+AGG 0.464695 8.4:+40726163 None:intergenic
AAACAGCTAGAAAAGGACTA+TGG 0.477186 8.4:-40726985 MS.gene63172:CDS
CATCTTGTGAAAATTCTGAC+TGG 0.483181 8.4:+40726118 None:intergenic
ATACCTAAAGTTGAAGATGT+TGG 0.484817 8.4:-40726054 MS.gene63172:CDS
AATGAATCACCTTGACAAGA+AGG 0.485040 8.4:+40727847 None:intergenic
AACCATATAGCCACTTGTCT+TGG 0.489367 8.4:+40727036 None:intergenic
ATAGAAAACAAGCTTGAACC+TGG 0.511077 8.4:-40727096 MS.gene63172:CDS
CAAAACAAAACAGCTAGAAA+AGG 0.514734 8.4:-40726992 MS.gene63172:CDS
TGCACCAACCAGGTAAGAAA+AGG 0.516937 8.4:-40727164 MS.gene63172:CDS
TTGGTTCCACAACTAAGGAT+TGG 0.517249 8.4:+40726142 None:intergenic
TTTGTGAAATGATATCATCA+AGG 0.518295 8.4:+40726214 None:intergenic
TTGTGAAATGATATCATCAA+GGG 0.525597 8.4:+40726215 None:intergenic
AGCTCAAAACCTTCTTGTCA+AGG 0.547348 8.4:-40727856 MS.gene63172:intron
AAACAACAAATTAAAAGAAG+AGG 0.565427 8.4:-40726905 MS.gene63172:intron
GTTGTGAATGTTGGTGACAT+GGG 0.567777 8.4:-40727273 MS.gene63172:CDS
GAATGCCTACAGAACACTGA+TGG 0.567809 8.4:-40726168 MS.gene63172:CDS
TGTTGTGAATGTTGGTGACA+TGG 0.586351 8.4:-40727274 MS.gene63172:CDS
GAGGTGAGCTTGCACCAACC+AGG 0.587649 8.4:-40727174 MS.gene63172:CDS
AAAACAAGCTTGAACCTGGA+AGG 0.588635 8.4:-40727092 MS.gene63172:CDS
TAGCTTGCAGCCAAGACAAG+TGG 0.597298 8.4:-40727046 MS.gene63172:CDS
TGGAAACCAATCCTTAGTTG+TGG 0.606983 8.4:-40726148 MS.gene63172:CDS
AAGGAAAGTTCAACTTGCAA+AGG 0.607696 8.4:-40727073 MS.gene63172:CDS
ACCAACCAGGTAAGAAAAGG+AGG 0.621874 8.4:-40727161 MS.gene63172:CDS
AAGCTACAGCAACTTTCATG+TGG 0.654541 8.4:+40726018 None:intergenic
GTATGAATGGAACAGTCAAG+AGG 0.655378 8.4:+40726073 None:intergenic
TGATGATGATGAGAACTATG+AGG 0.658523 8.4:-40727193 MS.gene63172:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACAAAGTTACATTTTTTT+AGG - chr8.4:40726606-40726625 MS.gene63172:intron 15.0%
!! AAAAAGTTTGATCTTCAAAT+GGG + chr8.4:40727947-40727966 None:intergenic 20.0%
!! AAACAACAAATTAAAAGAAG+AGG - chr8.4:40727028-40727047 MS.gene63172:CDS 20.0%
!! TAAAAAGTTTGATCTTCAAA+TGG + chr8.4:40727948-40727967 None:intergenic 20.0%
!! TATTGTGATTCTTTAATTGA+CGG + chr8.4:40726400-40726419 None:intergenic 20.0%
!! TTCACAAAATAAAAATGATG+TGG - chr8.4:40727734-40727753 MS.gene63172:intron 20.0%
!!! AAACATCATCTTTTAAAACA+AGG + chr8.4:40726539-40726558 None:intergenic 20.0%
!!! AAGATCAAACTTTTTACTTT+TGG - chr8.4:40727952-40727971 MS.gene63172:CDS 20.0%
!!! ATATAATTTTATCCCACTAA+TGG - chr8.4:40727595-40727614 MS.gene63172:intron 20.0%
!!! ATTCAATCTTGATTTTTCAT+CGG + chr8.4:40726563-40726582 None:intergenic 20.0%
!!! CAAGCTTAATCTATTTTTAT+CGG - chr8.4:40727367-40727386 MS.gene63172:intron 20.0%
!!! TAATGGTAAGTGATTAATTT+TGG - chr8.4:40727612-40727631 MS.gene63172:intron 20.0%
!!! TATTTTCCTCTTTTTTTCTT+GGG + chr8.4:40727683-40727702 None:intergenic 20.0%
!!! TTATTTTCCTCTTTTTTTCT+TGG + chr8.4:40727684-40727703 None:intergenic 20.0%
! AATTAATCACTTACCATTAG+TGG + chr8.4:40727611-40727630 None:intergenic 25.0%
! ATTAATCACTTACCATTAGT+GGG + chr8.4:40727610-40727629 None:intergenic 25.0%
! TATTTCTCTCAAGAAAAGAT+TGG - chr8.4:40727656-40727675 MS.gene63172:intron 25.0%
! TGTTTCCATTATAAATTTCC+CGG - chr8.4:40726481-40726500 MS.gene63172:intron 25.0%
! TTGTGAAATGATATCATCAA+GGG + chr8.4:40727721-40727740 None:intergenic 25.0%
! TTTCAAGAAAATGAACTTGT+TGG + chr8.4:40726806-40726825 None:intergenic 25.0%
! TTTGTGAAATGATATCATCA+AGG + chr8.4:40727722-40727741 None:intergenic 25.0%
!! AACAAGTTCATTTTCTTGAA+AGG - chr8.4:40726805-40726824 MS.gene63172:intron 25.0%
!! AGCTTTTGTCAAAATTAAAG+TGG - chr8.4:40726350-40726369 MS.gene63172:intron 25.0%
!! TGCAGATGAAATTTTCTTTT+TGG - chr8.4:40726198-40726217 MS.gene63172:CDS 25.0%
!! TGTTAATGTTGATAAGTTCT+TGG + chr8.4:40727510-40727529 None:intergenic 25.0%
!! TTGACAAAAGCTACATTTTA+GGG + chr8.4:40726342-40726361 None:intergenic 25.0%
!! TTTGACAAAAGCTACATTTT+AGG + chr8.4:40726343-40726362 None:intergenic 25.0%
!!! AAGTTACATTTTTTTAGGCT+TGG - chr8.4:40726611-40726630 MS.gene63172:intron 25.0%
!!! ATCTATTTTTATCGGTCATT+TGG - chr8.4:40727375-40727394 MS.gene63172:intron 25.0%
AAACAGAAGTTGGATTCTTA+TGG - chr8.4:40726225-40726244 MS.gene63172:CDS 30.0%
ATACCTAAAGTTGAAGATGT+TGG - chr8.4:40727879-40727898 MS.gene63172:CDS 30.0%
CAAAACAAAACAGCTAGAAA+AGG - chr8.4:40726941-40726960 MS.gene63172:CDS 30.0%
TCTTCAACTTTAGGTATGAA+TGG + chr8.4:40727876-40727895 None:intergenic 30.0%
TGGTACAACTTTCTTATTAC+AGG - chr8.4:40727632-40727651 MS.gene63172:intron 30.0%
! ACAGATTTTACATTTTGCAC+AGG + chr8.4:40727474-40727493 None:intergenic 30.0%
! CAGATTTTACATTTTGCACA+GGG + chr8.4:40727473-40727492 None:intergenic 30.0%
!!! ATTTTTTTAGGCTTGGATTC+AGG - chr8.4:40726618-40726637 MS.gene63172:intron 30.0%
AAAATGTAGCCGATATGGTT+CGG - chr8.4:40726437-40726456 MS.gene63172:intron 35.0%
AAACAGCTAGAAAAGGACTA+TGG - chr8.4:40726948-40726967 MS.gene63172:CDS 35.0%
AAATGTCCTTAATCGCGAAT+TGG + chr8.4:40726508-40726527 None:intergenic 35.0%
AAGGAAAGTTCAACTTGCAA+AGG - chr8.4:40726860-40726879 MS.gene63172:intron 35.0%
AATGAATCACCTTGACAAGA+AGG + chr8.4:40726089-40726108 None:intergenic 35.0%
AATGTCCTTAATCGCGAATT+GGG + chr8.4:40726507-40726526 None:intergenic 35.0%
ATAGAAAACAAGCTTGAACC+TGG - chr8.4:40726837-40726856 MS.gene63172:intron 35.0%
ATTGGTCCCAAGAAAAAAAG+AGG - chr8.4:40727674-40727693 MS.gene63172:intron 35.0%
CAACAATCAAGAAGCTACAA+AGG + chr8.4:40726113-40726132 None:intergenic 35.0%
CACAACATCAACCATAGAAT+TGG + chr8.4:40726646-40726665 None:intergenic 35.0%
CATCCAACATCTTCAACTTT+AGG + chr8.4:40727885-40727904 None:intergenic 35.0%
CATCTTGTGAAAATTCTGAC+TGG + chr8.4:40727818-40727837 None:intergenic 35.0%
GTAGTAAAATGTAGCCGATA+TGG - chr8.4:40726432-40726451 MS.gene63172:intron 35.0%
TCAGTGCTATATATGCTTGA+TGG + chr8.4:40727104-40727123 None:intergenic 35.0%
TGGCTATATGGTTCCAAAAT+AGG - chr8.4:40726907-40726926 MS.gene63172:CDS 35.0%
! ATGGTTGATGTTGTGAATGT+TGG - chr8.4:40726651-40726670 MS.gene63172:intron 35.0%
! TGAATCTTGCTCTCCTATTT+TGG + chr8.4:40726923-40726942 None:intergenic 35.0%
! TGATGATGATGAGAACTATG+AGG - chr8.4:40726740-40726759 MS.gene63172:intron 35.0%
! TGTGAAAATTCTGACTGGTT+TGG + chr8.4:40727813-40727832 None:intergenic 35.0%
! TTGGTGCATGTTTGAAATCA+GGG - chr8.4:40726295-40726314 MS.gene63172:intron 35.0%
! TTTTGGTCGAAAACAGAAGT+TGG - chr8.4:40726215-40726234 MS.gene63172:CDS 35.0%
AAAACAAGCTTGAACCTGGA+AGG - chr8.4:40726841-40726860 MS.gene63172:intron 40.0%
AACCATATAGCCACTTGTCT+TGG + chr8.4:40726900-40726919 None:intergenic 40.0%
AAGCTACAGCAACTTTCATG+TGG + chr8.4:40727918-40727937 None:intergenic 40.0%
AATCGTTGACCGAACCATAT+CGG + chr8.4:40726449-40726468 None:intergenic 40.0%
AGCTCAAAACCTTCTTGTCA+AGG - chr8.4:40726077-40726096 MS.gene63172:CDS 40.0%
GTATGAATGGAACAGTCAAG+AGG + chr8.4:40727863-40727882 None:intergenic 40.0%
TCTAATAGTGCCACGATACT+TGG - chr8.4:40726276-40726295 MS.gene63172:CDS 40.0%
TGGAAACCAATCCTTAGTTG+TGG - chr8.4:40727785-40727804 MS.gene63172:intron 40.0%
TTGGGCCGGGAAATTTATAA+TGG + chr8.4:40726489-40726508 None:intergenic 40.0%
TTGGTTCCACAACTAAGGAT+TGG + chr8.4:40727794-40727813 None:intergenic 40.0%
! ATGGAACAGTCAAGAGGTTT+TGG + chr8.4:40727857-40727876 None:intergenic 40.0%
! CTTGGTGCATGTTTGAAATC+AGG - chr8.4:40726294-40726313 MS.gene63172:intron 40.0%
! GGATTCAGGTTCCAATTCTA+TGG - chr8.4:40726632-40726651 MS.gene63172:intron 40.0%
!! GTTGTGAATGTTGGTGACAT+GGG - chr8.4:40726660-40726679 MS.gene63172:intron 40.0%
!! TGTTGTGAATGTTGGTGACA+TGG - chr8.4:40726659-40726678 MS.gene63172:intron 40.0%
ACCAACCAGGTAAGAAAAGG+AGG - chr8.4:40726772-40726791 MS.gene63172:intron 45.0%
AGCCAAGACAAGTGGCTATA+TGG - chr8.4:40726895-40726914 MS.gene63172:intron 45.0%
GAATGCCTACAGAACACTGA+TGG - chr8.4:40727765-40727784 MS.gene63172:intron 45.0%
GGTTTCCATCAGTGTTCTGT+AGG + chr8.4:40727773-40727792 None:intergenic 45.0%
TGCACCAACCAGGTAAGAAA+AGG - chr8.4:40726769-40726788 MS.gene63172:intron 45.0%
! CAAACATGCACCAAGTATCG+TGG + chr8.4:40726289-40726308 None:intergenic 45.0%
! GCAAGTTGAACTTTCCTTCC+AGG + chr8.4:40726858-40726877 None:intergenic 45.0%
! GTGCATGTTTGAAATCAGGG+TGG - chr8.4:40726298-40726317 MS.gene63172:intron 45.0%
!! CTGGTTTGGTTCCACAACTA+AGG + chr8.4:40727799-40727818 None:intergenic 45.0%
!!! CAGTCAAGAGGTTTTGGCTT+AGG + chr8.4:40727851-40727870 None:intergenic 45.0%
ACGAGCACCAGACATGACAT+TGG + chr8.4:40727221-40727240 None:intergenic 50.0%
GTCAGTGCCAATGTCATGTC+TGG - chr8.4:40727211-40727230 MS.gene63172:CDS 50.0%
TCCTTAATCGCGAATTGGGC+CGG + chr8.4:40726503-40726522 None:intergenic 50.0%
TGAGCTCGTCAACTCTCTCT+TGG - chr8.4:40726043-40726062 MS.gene63172:CDS 50.0%
! GCCTCCTTTTCTTACCTGGT+TGG + chr8.4:40726776-40726795 None:intergenic 50.0%
! GTGAGCCTCCTTTTCTTACC+TGG + chr8.4:40726780-40726799 None:intergenic 50.0%
! TAGCTTGCAGCCAAGACAAG+TGG - chr8.4:40726887-40726906 MS.gene63172:intron 50.0%
CCTTAATCGCGAATTGGGCC+GGG + chr8.4:40726502-40726521 None:intergenic 55.0%
CCCGGCCCAATTCGCGATTA+AGG - chr8.4:40726499-40726518 MS.gene63172:intron 60.0%
GAGGTGAGCTTGCACCAACC+AGG - chr8.4:40726759-40726778 MS.gene63172:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 40725972 40727983 40725972 ID=MS.gene63172
chr8.4 mRNA 40725972 40727983 40725972 ID=MS.gene63172.t1;Parent=MS.gene63172
chr8.4 exon 40727857 40727983 40727857 ID=MS.gene63172.t1.exon1;Parent=MS.gene63172.t1
chr8.4 CDS 40727857 40727983 40727857 ID=cds.MS.gene63172.t1;Parent=MS.gene63172.t1
chr8.4 exon 40726906 40727315 40726906 ID=MS.gene63172.t1.exon2;Parent=MS.gene63172.t1
chr8.4 CDS 40726906 40727315 40726906 ID=cds.MS.gene63172.t1;Parent=MS.gene63172.t1
chr8.4 exon 40725972 40726301 40725972 ID=MS.gene63172.t1.exon3;Parent=MS.gene63172.t1
chr8.4 CDS 40725972 40726301 40725972 ID=cds.MS.gene63172.t1;Parent=MS.gene63172.t1
Gene Sequence

>MS.gene63172

ATGGAAGATGAGAAGCTTTATGAGAAATCAAGTTCAAGCATGACTATTCTACTTCAAAGTCAAAGCTCTTCTGAGCTCGTCAACTCTCTCTTGGTTCACAATCAAAGCTCAAAACCTTCTTGTCAAGGTGATTCATTACCTTTGTAGCTTCTTGATTGTTGTCTTGAAGTTTTTTATTTTGCTTTTTTTCTTTGAAGTTTGTTTCACATGTTGAGTTTTTCTTAAGTGCAGATGAAATTTTCTTTTTGGTCGAAAACAGAAGTTGGATTCTTATGGTTTCTTCTTATCTGTTTTAAATTGCTATTCTAATAGTGCCACGATACTTGGTGCATGTTTGAAATCAGGGTGGTAACGTGATTTCTTGAAACCCTAAAATGTAGCTTTTGTCAAAATTAAAGTGGTACAATTTGATTCTATCTAACTCACCGTCAATTAAAGAATCACAATATTTTAGTGAATCGTAGTAAAATGTAGCCGATATGGTTCGGTCAACGATTATGTTGTAATCATGTTTCCATTATAAATTTCCCGGCCCAATTCGCGATTAAGGACATTTTTTTTAAACCTTGTTTTAAAAGATGATGTTTTCCGATGAAAAATCAAGATTGAATCTCATGTAAGTCGAATTATTATAATACAAAGTTACATTTTTTTAGGCTTGGATTCAGGTTCCAATTCTATGGTTGATGTTGTGAATGTTGGTGACATGGGAGTCAAAAGTAGCTCTTTCTTTCAAGCTTTTGAGAAAGAAGAGAACAATGATGATGATGATGATGATGAGAACTATGAGGTGAGCTTGCACCAACCAGGTAAGAAAAGGAGGCTCACAAACCAACAAGTTCATTTTCTTGAAAGGAATTTTGAGATAGAAAACAAGCTTGAACCTGGAAGGAAAGTTCAACTTGCAAAGGAGCTTAGCTTGCAGCCAAGACAAGTGGCTATATGGTTCCAAAATAGGAGAGCAAGATTCAAAACAAAACAGCTAGAAAAGGACTATGGTTCATTGAAAGCTAGCTATGATATGCTCAAAGTTGACTATGACAATCTCTTTCAAGAAAACAACAAATTAAAAGAAGAGGTAAAAAATTTATACATAAACAAACATATAATATACAAAATCATTTGTCTACCATCAAGCATATATAGCACTGACACATCTCGTGTCTCGAACTCTGACATATGTGATTATATTCAATTAATGTATGTTCTCAAATTATTTTCGATATCAATATGCAATACGTCAGTGCCAATGTCATGTCTGGTGCTCGTATTAGTGTTTATAGATTCTTGATATGACAAAAACAAAGACGTATGCATTCACTATGTTTTGATTTTATTTTTAAATATGATATATTGTTATTATAATAGTTTTTAAATGTCTTAAAATCATCAAAACAAGCTTAATCTATTTTTATCGGTCATTTGGATCTTTAAATGTGTCTTTAGTTAGTTAAATAATTACTCAAATGTATTTTTCAATAGTCAATTTTTTACAAAACCCTGTGCAAAATGTAAAATCTGTTATTATCATCTAGCCAAGAACTTATCAACATTAACAATCACTTACACGCAACATCTCTCTTTATGCTTATTTTTTTCTCAGTACTGCTTTGAGCATTTTACATATAATTTTATCCCACTAATGGTAAGTGATTAATTTTGGTACAACTTTCTTATTACAGGTTATTTCTCTCAAGAAAAGATTGGTCCCAAGAAAAAAAGAGGAAAATAATTTAGTTGATAAGTCCCTTGATGATATCATTTCACAAAATAAAAATGATGTGGTTGATTCAGAATGCCTACAGAACACTGATGGAAACCAATCCTTAGTTGTGGAACCAAACCAGTCAGAATTTTCACAAGATGAAGAAGACATCCTAAGCCAAAACCTCTTGACTGTTCCATTCATACCTAAAGTTGAAGATGTTGGATGTTATGATGAACCACATGAAAGTTGCTGTAGCTTTCAGTTCCCATTTGAAGATCAAACTTTTTACTTTTGGTCTTATTGA
Protein sequence

>MS.gene63172.t1

MEDEKLYEKSSSSMTILLQSQSSSELVNSLLVHNQSSKPSCQGSNSMVDVVNVGDMGVKSSSFFQAFEKEENNDDDDDDENYEVSLHQPGKKRRLTNQQVHFLERNFEIENKLEPGRKVQLAKELSLQPRQVAIWFQNRRARFKTKQLEKDYGSLKASYDMLKVDYDNLFQENNKLKEEVISLKKRLVPRKKEENNLVDKSLDDIISQNKNDVVDSECLQNTDGNQSLVVEPNQSEFSQDEEDILSQNLLTVPFIPKVEDVGCYDEPHESCCSFQFPFEDQTFYFWSY