Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63242.t1 | XP_013445755.1 | 99.2 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.00E+00 | 1187.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63242.t1 | O80605 | 69.9 | 602 | 166 | 5 | 5 | 600 | 2 | 594 | 3.0e-238 | 825.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63242.t1 | J7FDE7 | 99.2 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.0e+00 | 1187.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050894 | MS.gene63242 | 0.803831 | 2.89E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene63242 | 0.838923 | 2.15E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63242.t1 | MTR_8g468330 | 99.167 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1211 |
| MS.gene63242.t1 | MTR_3g110880 | 44.779 | 565 | 235 | 7 | 40 | 595 | 7 | 503 | 2.44e-149 | 440 |
| MS.gene63242.t1 | MTR_6g033580 | 43.609 | 532 | 212 | 10 | 54 | 565 | 10 | 473 | 8.33e-143 | 424 |
| MS.gene63242.t1 | MTR_1g096910 | 43.007 | 572 | 249 | 13 | 39 | 598 | 19 | 525 | 1.19e-141 | 421 |
| MS.gene63242.t1 | MTR_4g131920 | 43.110 | 508 | 217 | 6 | 61 | 565 | 33 | 471 | 5.09e-135 | 404 |
| MS.gene63242.t1 | MTR_4g131920 | 40.717 | 474 | 209 | 6 | 61 | 531 | 33 | 437 | 8.24e-115 | 350 |
| MS.gene63242.t1 | MTR_5g067470 | 52.991 | 234 | 101 | 3 | 54 | 284 | 28 | 255 | 2.65e-74 | 246 |
| MS.gene63242.t1 | MTR_5g067470 | 50.000 | 206 | 97 | 2 | 360 | 565 | 273 | 472 | 1.71e-56 | 199 |
| MS.gene63242.t1 | MTR_6g043880 | 47.639 | 233 | 115 | 2 | 55 | 285 | 26 | 253 | 3.51e-71 | 238 |
| MS.gene63242.t1 | MTR_6g043880 | 42.683 | 246 | 127 | 5 | 360 | 598 | 270 | 508 | 9.36e-52 | 186 |
| MS.gene63242.t1 | MTR_4g102110 | 29.804 | 255 | 123 | 6 | 69 | 303 | 6 | 224 | 4.43e-25 | 107 |
| MS.gene63242.t1 | MTR_4g102110 | 32.692 | 156 | 80 | 4 | 383 | 517 | 196 | 347 | 3.05e-18 | 87.0 |
| MS.gene63242.t1 | MTR_4g102190 | 42.500 | 120 | 62 | 2 | 111 | 228 | 133 | 247 | 4.20e-21 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63242.t1 | AT2G02860 | 69.657 | 613 | 149 | 7 | 5 | 600 | 2 | 594 | 0.0 | 854 |
| MS.gene63242.t1 | AT2G02860 | 70.306 | 458 | 123 | 4 | 147 | 600 | 16 | 464 | 0.0 | 664 |
| MS.gene63242.t1 | AT1G09960 | 44.700 | 566 | 231 | 10 | 34 | 587 | 5 | 500 | 3.07e-145 | 430 |
| MS.gene63242.t1 | AT1G71890 | 42.935 | 552 | 239 | 12 | 42 | 587 | 16 | 497 | 1.78e-142 | 423 |
| MS.gene63242.t1 | AT1G22710 | 40.840 | 595 | 256 | 11 | 13 | 598 | 5 | 512 | 7.06e-140 | 416 |
| MS.gene63242.t1 | AT5G06170 | 41.856 | 528 | 239 | 6 | 61 | 586 | 30 | 491 | 4.37e-138 | 411 |
| MS.gene63242.t1 | AT1G71880 | 41.373 | 568 | 258 | 7 | 23 | 587 | 3 | 498 | 1.61e-136 | 408 |
| MS.gene63242.t1 | AT1G66570 | 42.533 | 529 | 235 | 7 | 61 | 586 | 29 | 491 | 2.36e-136 | 407 |
| MS.gene63242.t1 | AT2G14670 | 43.289 | 529 | 231 | 7 | 61 | 586 | 30 | 492 | 3.17e-134 | 401 |
| MS.gene63242.t1 | AT5G43610 | 41.316 | 547 | 241 | 8 | 43 | 586 | 23 | 492 | 7.81e-131 | 392 |
| MS.gene63242.t1 | AT1G66570 | 39.446 | 469 | 215 | 7 | 61 | 526 | 29 | 431 | 5.67e-109 | 335 |
| MS.gene63242.t1 | AT1G66570 | 40.265 | 452 | 201 | 7 | 61 | 509 | 29 | 414 | 6.56e-109 | 333 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTTGTGGCCCCATTAC+AGG | 0.181088 | 8.4:+42150991 | MS.gene63242:CDS |
| GATAAATGTACTTCAAAATT+TGG | 0.185829 | 8.4:+42151840 | MS.gene63242:CDS |
| CAAACTTGTAGAACATTTAA+AGG | 0.194823 | 8.4:+42152167 | MS.gene63242:intron |
| GCAGACATTGGATACATATT+AGG | 0.197342 | 8.4:+42152017 | MS.gene63242:CDS |
| ATCAGATTCTGCTCCTTTAT+TGG | 0.203282 | 8.4:+42155636 | MS.gene63242:CDS |
| TTCAACCTTGTGTTGGTATT+TGG | 0.209252 | 8.4:+42151814 | MS.gene63242:CDS |
| TTAACTTGTTGACAAGTTTA+AGG | 0.221760 | 8.4:+42155833 | MS.gene63242:CDS |
| TTATATTTATTCTTGGGTTC+TGG | 0.225572 | 8.4:+42152210 | MS.gene63242:CDS |
| GCTGCTGTTATATTTATTCT+TGG | 0.264086 | 8.4:+42152203 | MS.gene63242:CDS |
| GGTCCATGGGATGCTCTCTT+TGG | 0.288809 | 8.4:+42157758 | MS.gene63242:CDS |
| ACTTCCAAAGTGGTCCCTTT+TGG | 0.289575 | 8.4:-42156133 | None:intergenic |
| AGATCATAATGAAAATTTAA+TGG | 0.305128 | 8.4:+42155789 | MS.gene63242:CDS |
| CCTTTATTGGATGAACAAAA+TGG | 0.305588 | 8.4:+42155649 | MS.gene63242:CDS |
| ATGATTATATCCCTTGGTTC+TGG | 0.309802 | 8.4:+42157737 | MS.gene63242:CDS |
| CTGGTTGTGTTTGTTCTGCT+TGG | 0.314119 | 8.4:+42156553 | MS.gene63242:CDS |
| TCGTTTCTTAGATTCTTATA+AGG | 0.314384 | 8.4:-42150269 | None:intergenic |
| TCTTCATTTATTTGGCTTTG+TGG | 0.317021 | 8.4:+42150979 | MS.gene63242:CDS |
| CAGACATTGGATACATATTA+GGG | 0.317808 | 8.4:+42152018 | MS.gene63242:CDS |
| GAACTTCATCAGCAAAATAT+AGG | 0.324119 | 8.4:-42155582 | None:intergenic |
| CAATATTCCAGCATTTGTTT+TGG | 0.325019 | 8.4:+42157787 | MS.gene63242:CDS |
| GGGGCCAGCTAGAGCACTTT+TGG | 0.330003 | 8.4:+42152372 | MS.gene63242:intron |
| GTCGTCTTTGTTTGCATGGC+TGG | 0.331375 | 8.4:+42156439 | MS.gene63242:CDS |
| GCATTATTCTTCGTCGGTAA+TGG | 0.334541 | 8.4:-42150386 | None:intergenic |
| CTGCTGTTATATTTATTCTT+GGG | 0.335722 | 8.4:+42152204 | MS.gene63242:CDS |
| CTGCTGGTGTTCAGTTTGGT+TGG | 0.338510 | 8.4:+42150444 | MS.gene63242:CDS |
| GGGATACAAAAGAGCATTGC+AGG | 0.341769 | 8.4:+42152039 | MS.gene63242:CDS |
| TGATGGGTGCAAGATTAGTA+TGG | 0.342077 | 8.4:+42156401 | MS.gene63242:CDS |
| TGCTGGTGTTCAGTTTGGTT+GGG | 0.348774 | 8.4:+42150445 | MS.gene63242:CDS |
| ATGGCAGTGGGCAACATTCT+AGG | 0.352234 | 8.4:+42152785 | MS.gene63242:CDS |
| TATCCCTTGGTTCTGGTCCA+TGG | 0.360221 | 8.4:+42157744 | MS.gene63242:CDS |
| TCTTCTCACACCTTACATTC+AGG | 0.361681 | 8.4:+42150481 | MS.gene63242:CDS |
| GCAGAGTTGACTGCTGATTC+AGG | 0.375792 | 8.4:+42156782 | MS.gene63242:CDS |
| TGATGCAGACATTGGGAATA+GGG | 0.392489 | 8.4:+42150947 | MS.gene63242:intron |
| TCTAGCAGTTTCAAGTCATC+AGG | 0.393476 | 8.4:+42157866 | MS.gene63242:CDS |
| CCTACCACAAGGCCTGTAAT+GGG | 0.394686 | 8.4:-42151003 | None:intergenic |
| TTGATGCAGACATTGGGAAT+AGG | 0.402286 | 8.4:+42150946 | MS.gene63242:intron |
| GGTGTTAGAGAAGGTGCATT+TGG | 0.403690 | 8.4:+42156172 | MS.gene63242:CDS |
| TTTGATACATTGCGTTGATC+AGG | 0.404726 | 8.4:-42152743 | None:intergenic |
| ATATAACAGCAGCCCTTGTT+CGG | 0.409438 | 8.4:-42152193 | None:intergenic |
| CAAGCTCTATTTGTCAAGAA+AGG | 0.411741 | 8.4:-42154644 | None:intergenic |
| ATCCCTTGGTTCTGGTCCAT+GGG | 0.418535 | 8.4:+42157745 | MS.gene63242:CDS |
| ACTTACCTGCACTGTGTTGT+TGG | 0.425888 | 8.4:-42152246 | None:intergenic |
| ATGACTTGAAACTGCTAGAA+AGG | 0.429364 | 8.4:-42157862 | None:intergenic |
| AAGGAGCAGAATCTGATAAC+TGG | 0.429671 | 8.4:-42155630 | None:intergenic |
| CTTAGTTGCACCGTTGCTGC+TGG | 0.432630 | 8.4:+42150428 | MS.gene63242:CDS |
| AAACTTGTAGAACATTTAAA+GGG | 0.440376 | 8.4:+42152168 | MS.gene63242:intron |
| TCTTGCAATTGTTGCTCCAC+AGG | 0.442753 | 8.4:+42156920 | MS.gene63242:CDS |
| CGAACCAATGTGTAAGTTGA+TGG | 0.442939 | 8.4:+42156384 | MS.gene63242:CDS |
| ACCTACCACAAGGCCTGTAA+TGG | 0.450617 | 8.4:-42151004 | None:intergenic |
| GTTGCTGCTGGTGTTCAGTT+TGG | 0.450766 | 8.4:+42150440 | MS.gene63242:CDS |
| AACTTCATCAGCAAAATATA+GGG | 0.451842 | 8.4:-42155581 | None:intergenic |
| TAATTTAGGTGATATTGATC+GGG | 0.454046 | 8.4:+42151988 | MS.gene63242:intron |
| TTGAAACTGCTAGAAAGGTT+TGG | 0.454502 | 8.4:-42157857 | None:intergenic |
| TATAACAGCAGCCCTTGTTC+GGG | 0.457428 | 8.4:-42152192 | None:intergenic |
| GAAGTAGATCTTTATGATCA+AGG | 0.457898 | 8.4:+42156151 | MS.gene63242:CDS |
| TGAGGCATGTGGCAATCTTA+AGG | 0.459644 | 8.4:+42154670 | MS.gene63242:CDS |
| GCATTCAGTGCTGGTTGTAA+TGG | 0.460583 | 8.4:+42155873 | MS.gene63242:CDS |
| ACCTGCTATGCATTCAGTGC+TGG | 0.463939 | 8.4:+42155864 | MS.gene63242:CDS |
| GTAATTTAGGTGATATTGAT+CGG | 0.464209 | 8.4:+42151987 | MS.gene63242:intron |
| TGGTTGTAATGGCTCTCACT+TGG | 0.466348 | 8.4:+42155884 | MS.gene63242:CDS |
| CCATGGGATGCTCTCTTTGG+TGG | 0.467830 | 8.4:+42157761 | MS.gene63242:CDS |
| CGAGGGATAGAACATGCAAT+TGG | 0.469372 | 8.4:+42156502 | MS.gene63242:CDS |
| GTTTATCATGGGGATCCAAA+AGG | 0.474324 | 8.4:+42156118 | MS.gene63242:CDS |
| AACTCTGCTGTAACAGCAAA+GGG | 0.474853 | 8.4:-42156767 | None:intergenic |
| ATTTAGATGATTATATCCCT+TGG | 0.481464 | 8.4:+42157731 | MS.gene63242:intron |
| CTGTCTACCTGCAGTTGTCA+TGG | 0.481867 | 8.4:+42156053 | MS.gene63242:intron |
| CGTGTTAGGACCTGAATGTA+AGG | 0.483547 | 8.4:-42150491 | None:intergenic |
| GTCGAACTCGTCGGCATCGA+CGG | 0.484624 | 8.4:+42150308 | MS.gene63242:CDS |
| TTTGTTCGATACGGATTGGA+TGG | 0.485266 | 8.4:+42156087 | MS.gene63242:CDS |
| ATGGGAAGAGAAGTTTATCA+TGG | 0.487612 | 8.4:+42156106 | MS.gene63242:CDS |
| CATAATGAAAATTTAATGGA+TGG | 0.488610 | 8.4:+42155793 | MS.gene63242:CDS |
| GGATGGGCCTGGAGCAGTAT+TGG | 0.491457 | 8.4:+42155810 | MS.gene63242:CDS |
| ATGGCTTTATAGGTTGTGCT+TGG | 0.491540 | 8.4:+42156343 | MS.gene63242:intron |
| AGAGATCCTGCTAGAATGAA+TGG | 0.494658 | 8.4:-42151873 | None:intergenic |
| AGCATGAGAGTTTCAATGCT+GGG | 0.498161 | 8.4:+42155764 | MS.gene63242:CDS |
| AAGCTCTATTTGTCAAGAAA+GGG | 0.498756 | 8.4:-42154643 | None:intergenic |
| GCGTCCATCTGTGCTCTAGC+CGG | 0.500700 | 8.4:+42157809 | MS.gene63242:CDS |
| GCTGATTCAGGTGGTGGCCA+AGG | 0.516252 | 8.4:+42156794 | MS.gene63242:CDS |
| GGCAGCATTTCTTGTTGCTG+TGG | 0.519356 | 8.4:+42154691 | MS.gene63242:CDS |
| CCTGCACTGTGTTGTTGGCA+AGG | 0.520122 | 8.4:-42152241 | None:intergenic |
| TGGGATGCTCTCTTTGGTGG+TGG | 0.522974 | 8.4:+42157764 | MS.gene63242:CDS |
| CTATCCCTCGAGTATAATCA+TGG | 0.523520 | 8.4:-42156489 | None:intergenic |
| GAAAATTTAATGGATGGGCC+TGG | 0.525286 | 8.4:+42155799 | MS.gene63242:CDS |
| ACGGCGATGAGCCTCGGCAT+CGG | 0.526213 | 8.4:+42150333 | MS.gene63242:CDS |
| ACGGCGACGGCGATGAGCCT+CGG | 0.526343 | 8.4:+42150327 | MS.gene63242:CDS |
| CATTTAAAGGGACCCGAACA+AGG | 0.526346 | 8.4:+42152180 | MS.gene63242:CDS |
| ATGGACGCCAAAACAAATGC+TGG | 0.527268 | 8.4:-42157794 | None:intergenic |
| CAAGCAGAACAAACACAACC+AGG | 0.532679 | 8.4:-42156552 | None:intergenic |
| ATCCTCGCTTAACTTACCAT+TGG | 0.532882 | 8.4:-42155716 | None:intergenic |
| AGGAATCAAGTATGCTTCCC+TGG | 0.535395 | 8.4:+42156534 | MS.gene63242:CDS |
| TCTGCCAAAAGTGCTCTAGC+TGG | 0.536289 | 8.4:-42152376 | None:intergenic |
| AACGAAGCATTATTCTTCGT+CGG | 0.537348 | 8.4:-42150392 | None:intergenic |
| TTGTTCGATACGGATTGGAT+GGG | 0.538564 | 8.4:+42156088 | MS.gene63242:CDS |
| AAAACTTCACTCACCGCAAG+TGG | 0.538916 | 8.4:-42156580 | None:intergenic |
| TAGAGTTGCAACAATGCCAC+CGG | 0.540131 | 8.4:-42157828 | None:intergenic |
| AAGTTAACCAATACTGCTCC+AGG | 0.544867 | 8.4:-42155817 | None:intergenic |
| AGACGTCCATTCATTCTAGC+AGG | 0.545928 | 8.4:+42151867 | MS.gene63242:CDS |
| CAACACGTCGTCGCAATGGC+GGG | 0.546587 | 8.4:+42150218 | None:intergenic |
| CGTCTGGTGCTAGTGGAAAG+TGG | 0.547536 | 8.4:+42152813 | MS.gene63242:CDS |
| AACATTCTAGGATATTCGTC+TGG | 0.547818 | 8.4:+42152797 | MS.gene63242:CDS |
| TTTATCATGGGGATCCAAAA+GGG | 0.547987 | 8.4:+42156119 | MS.gene63242:CDS |
| ATAATGAAAATTTAATGGAT+GGG | 0.551396 | 8.4:+42155794 | MS.gene63242:CDS |
| TGGGAAGAGAAGTTTATCAT+GGG | 0.553628 | 8.4:+42156107 | MS.gene63242:CDS |
| AAGCATGAGAGTTTCAATGC+TGG | 0.555243 | 8.4:+42155763 | MS.gene63242:CDS |
| GGATATTCGTCTGGTGCTAG+TGG | 0.556399 | 8.4:+42152806 | MS.gene63242:CDS |
| GGTTGTAATGGCTCTCACTT+GGG | 0.562605 | 8.4:+42155885 | MS.gene63242:CDS |
| TCTGTCCATGATTATACTCG+AGG | 0.565758 | 8.4:+42156484 | MS.gene63242:CDS |
| GGATCCAAAAGGGACCACTT+TGG | 0.567204 | 8.4:+42156129 | MS.gene63242:CDS |
| GACTCATTTATAACAGACAA+AGG | 0.568179 | 8.4:-42155694 | None:intergenic |
| CAACTCTGCTGTAACAGCAA+AGG | 0.569689 | 8.4:-42156768 | None:intergenic |
| TTACAGGTTCAACCTTGTGT+TGG | 0.571947 | 8.4:+42151807 | MS.gene63242:intron |
| ACCAGCACTGAATGCATAGC+AGG | 0.572610 | 8.4:-42155865 | None:intergenic |
| TTGACTGCTGATTCAGGTGG+TGG | 0.581081 | 8.4:+42156788 | MS.gene63242:CDS |
| TATGATCAAGGTGTTAGAGA+AGG | 0.584148 | 8.4:+42156163 | MS.gene63242:CDS |
| GCACCCATCAACTTACACAT+TGG | 0.584425 | 8.4:-42156388 | None:intergenic |
| TCTGTTATAAATGAGTCCAA+TGG | 0.584815 | 8.4:+42155700 | MS.gene63242:CDS |
| GCCACCGGCTAGAGCACAGA+TGG | 0.585393 | 8.4:-42157813 | None:intergenic |
| CATGCAATTGGAGCAAGTGA+AGG | 0.590178 | 8.4:+42156514 | MS.gene63242:CDS |
| TGGCCCCATTACAGGCCTTG+TGG | 0.591978 | 8.4:+42150999 | MS.gene63242:CDS |
| GATGGGTGCAAGATTAGTAT+GGG | 0.593697 | 8.4:+42156402 | MS.gene63242:CDS |
| CTGTCCATGATTATACTCGA+GGG | 0.596081 | 8.4:+42156485 | MS.gene63242:CDS |
| CTCGTCGGCATCGACGGCGA+CGG | 0.596347 | 8.4:+42150314 | MS.gene63242:CDS |
| TGTTTACTTGCAGTAGTAAG+CGG | 0.596694 | 8.4:-42155604 | None:intergenic |
| AAACTGAACACCAGCAGCAA+CGG | 0.601392 | 8.4:-42150438 | None:intergenic |
| ATAAAGATCTACTTCCAAAG+TGG | 0.605985 | 8.4:-42156143 | None:intergenic |
| TCCATCTGTGCTCTAGCCGG+TGG | 0.612635 | 8.4:+42157812 | MS.gene63242:CDS |
| TCTGCTTGGATTTCCACTTG+CGG | 0.613392 | 8.4:+42156567 | MS.gene63242:CDS |
| ATCCCATGGACCAGAACCAA+GGG | 0.616521 | 8.4:-42157747 | None:intergenic |
| CCTTGCCAACAACACAGTGC+AGG | 0.617565 | 8.4:+42152241 | MS.gene63242:CDS |
| CATCCCATGGACCAGAACCA+AGG | 0.629070 | 8.4:-42157748 | None:intergenic |
| CCACCAAAGAGAGCATCCCA+TGG | 0.630045 | 8.4:-42157761 | None:intergenic |
| GCCGCGGAAGTCGAACTCGT+CGG | 0.634440 | 8.4:+42150299 | MS.gene63242:CDS |
| GCATGAGAGTTTCAATGCTG+GGG | 0.638752 | 8.4:+42155765 | MS.gene63242:CDS |
| TTAAGATCGATCCGATGCCG+AGG | 0.646226 | 8.4:-42150344 | None:intergenic |
| TTAGATTCTTATAAGGAACA+CGG | 0.649952 | 8.4:-42150262 | None:intergenic |
| GAACCAATGTGTAAGTTGAT+GGG | 0.650882 | 8.4:+42156385 | MS.gene63242:CDS |
| AACAGCAAAGGGAACACTGT+AGG | 0.652099 | 8.4:-42156756 | None:intergenic |
| GGGAAGAGAAGTTTATCATG+GGG | 0.653043 | 8.4:+42156108 | MS.gene63242:CDS |
| GCCGACGAGTTCGACTTCCG+CGG | 0.659454 | 8.4:-42150300 | None:intergenic |
| ATTTAAAGGGACCCGAACAA+GGG | 0.660883 | 8.4:+42152181 | MS.gene63242:CDS |
| CTACCACAAGGCCTGTAATG+GGG | 0.667284 | 8.4:-42151002 | None:intergenic |
| TCACTCCAAATACCAACACA+AGG | 0.669287 | 8.4:-42151819 | None:intergenic |
| AGCACTGAATGCATAGCAGG+TGG | 0.671343 | 8.4:-42155862 | None:intergenic |
| GACGAGTTCGACTTCCGCGG+CGG | 0.675392 | 8.4:-42150297 | None:intergenic |
| GACAAATAGAGCTTGCTGTG+AGG | 0.676643 | 8.4:+42154652 | MS.gene63242:CDS |
| AAGCAGAACAAACACAACCA+GGG | 0.677109 | 8.4:-42156551 | None:intergenic |
| GTCCAATGGTAAGTTAAGCG+AGG | 0.680050 | 8.4:+42155714 | MS.gene63242:CDS |
| GTTAAGCGAGGATCGCTCTG+AGG | 0.695917 | 8.4:+42155726 | MS.gene63242:CDS |
| GGTAATGGATCTCCGCGCGG+CGG | 0.696957 | 8.4:-42150371 | None:intergenic |
| AAGAAACGATTCTTCCGCCG+CGG | 0.705197 | 8.4:+42150283 | MS.gene63242:CDS |
| AGAGCTTGCTGTGAGGCATG+TGG | 0.720128 | 8.4:+42154659 | MS.gene63242:CDS |
| GTCGGTAATGGATCTCCGCG+CGG | 0.724346 | 8.4:-42150374 | None:intergenic |
| AGACATTGGATACATATTAG+GGG | 0.732708 | 8.4:+42152019 | MS.gene63242:CDS |
| GATCTTAATTCACCGCCGCG+CGG | 0.737072 | 8.4:+42150359 | MS.gene63242:CDS |
| GAGTTGACTGCTGATTCAGG+TGG | 0.739601 | 8.4:+42156785 | MS.gene63242:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 42150233 | 42157904 | 42150233 | ID=MS.gene63242 |
| chr8.4 | mRNA | 42150233 | 42157904 | 42150233 | ID=MS.gene63242.t1;Parent=MS.gene63242 |
| chr8.4 | exon | 42150233 | 42150502 | 42150233 | ID=MS.gene63242.t1.exon1;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42150233 | 42150502 | 42150233 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42150955 | 42151020 | 42150955 | ID=MS.gene63242.t1.exon2;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42150955 | 42151020 | 42150955 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42151813 | 42151911 | 42151813 | ID=MS.gene63242.t1.exon3;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42151813 | 42151911 | 42151813 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42151996 | 42152060 | 42151996 | ID=MS.gene63242.t1.exon4;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42151996 | 42152060 | 42151996 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42152178 | 42152262 | 42152178 | ID=MS.gene63242.t1.exon5;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42152178 | 42152262 | 42152178 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42152373 | 42152406 | 42152373 | ID=MS.gene63242.t1.exon6;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42152373 | 42152406 | 42152373 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42152741 | 42152840 | 42152741 | ID=MS.gene63242.t1.exon7;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42152741 | 42152840 | 42152741 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42154637 | 42154712 | 42154637 | ID=MS.gene63242.t1.exon8;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42154637 | 42154712 | 42154637 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42155553 | 42155906 | 42155553 | ID=MS.gene63242.t1.exon9;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42155553 | 42155906 | 42155553 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42156067 | 42156210 | 42156067 | ID=MS.gene63242.t1.exon10;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42156067 | 42156210 | 42156067 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42156355 | 42156588 | 42156355 | ID=MS.gene63242.t1.exon11;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42156355 | 42156588 | 42156355 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42156752 | 42156815 | 42156752 | ID=MS.gene63242.t1.exon12;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42156752 | 42156815 | 42156752 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42156898 | 42156941 | 42156898 | ID=MS.gene63242.t1.exon13;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42156898 | 42156941 | 42156898 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| chr8.4 | exon | 42157737 | 42157904 | 42157737 | ID=MS.gene63242.t1.exon14;Parent=MS.gene63242.t1 |
| chr8.4 | CDS | 42157737 | 42157904 | 42157737 | ID=cds.MS.gene63242.t1;Parent=MS.gene63242.t1 |
| Gene Sequence |
| Protein sequence |
