AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051234


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAATGTCCCTAGTATTT+TGG 0.210988 2.3:-49453925 None:intergenic
ACATCAAGACCCTTGATAAA+TGG 0.268068 2.3:-49452471 None:intergenic
TTTGATAACTACCGATCTTC+TGG 0.320168 2.3:+49453979 MS.gene051234:CDS
TCAACACATTGTAGAACTTC+TGG 0.325013 2.3:-49454165 None:intergenic
TGATGTTCAGCAAGTGTCTT+TGG 0.336264 2.3:+49454012 MS.gene051234:CDS
CTCAGAGGCATTTACGCATA+TGG 0.350883 2.3:+49451871 MS.gene051234:CDS
CTGTGATCTTTATGAGACTT+TGG 0.355425 2.3:+49453793 MS.gene051234:CDS
CAACAGGCTCAGTCTGGAAC+AGG 0.390696 2.3:+49452498 MS.gene051234:CDS
ATCATGCGTGAATTCCGTTC+TGG 0.390799 2.3:+49453944 MS.gene051234:CDS
GCCATCAGCTATTCAGCAAC+GGG 0.393795 2.3:+49452440 MS.gene051234:CDS
ACTCCGACTTGAATCTTAGA+TGG 0.408502 2.3:-49453614 None:intergenic
AAGACTGCAACCTTCTGCTC+TGG 0.409029 2.3:+49452522 MS.gene051234:CDS
TTACATCAAAATGTTCGTAT+TGG 0.414807 2.3:+49452797 MS.gene051234:CDS
GGGAATAGTTCCATTTATCA+AGG 0.444746 2.3:+49452461 MS.gene051234:CDS
CATGTTGTTGTTGGTACCCC+TGG 0.445958 2.3:+49452732 MS.gene051234:CDS
AGCATGTCAAATACACGTCC+AGG 0.452941 2.3:-49452750 None:intergenic
CTTGTGATCTCAAGTGCCTC+AGG 0.456300 2.3:-49453656 None:intergenic
ATTGGTCGTAGTGGAAGGTT+TGG 0.459303 2.3:+49454082 MS.gene051234:CDS
GGGTCTTGATGTTATACAAC+AGG 0.460845 2.3:+49452482 MS.gene051234:CDS
GAGACATGGACCAAAATACT+AGG 0.463229 2.3:+49453915 MS.gene051234:CDS
GTTATACAACAGGCTCAGTC+TGG 0.464551 2.3:+49452492 MS.gene051234:CDS
TTACTTCCTGCAGTCATGGC+AGG 0.465723 2.3:+49451559 None:intergenic
GATAGTTCTCAGGCTGTGTT+GGG 0.470642 2.3:-49454051 None:intergenic
CGTGCACTTGGAGATTATCT+AGG 0.472296 2.3:+49452639 MS.gene051234:CDS
AGCGGTGTTCATGTTGTTGT+TGG 0.477024 2.3:+49452723 MS.gene051234:CDS
CGAATGCCAAGCCTTGGTCT+TGG 0.479480 2.3:+49452575 MS.gene051234:CDS
CAAGACCAAGGCTTGGCATT+CGG 0.481084 2.3:-49452574 None:intergenic
GTTCTACAATGTGTTGATTG+AGG 0.485517 2.3:+49454171 MS.gene051234:CDS
GCGTGATGAGCTCACCTTGG+AGG 0.488852 2.3:+49453715 MS.gene051234:CDS
TCACAGAAGTTCAGCAACAT+TGG 0.492163 2.3:-49454203 None:intergenic
GAGAAGGTCATGCGTGCACT+TGG 0.495619 2.3:+49452627 MS.gene051234:CDS
CAGCCAGTCAACCTTTCGTC+TGG 0.496367 2.3:-49453846 None:intergenic
ACACCAGACGAAAGGTTGAC+TGG 0.497320 2.3:+49453843 MS.gene051234:CDS
GCATCAAACTGTGAACCCTC+TGG 0.509050 2.3:-49451589 None:intergenic
AGACTGCAACCTTCTGCTCT+GGG 0.510787 2.3:+49452523 MS.gene051234:CDS
CCCCGTTGCTGAATAGCTGA+TGG 0.513832 2.3:-49452441 None:intergenic
GAATCTTAGATGGCAACAGC+TGG 0.517992 2.3:-49453604 None:intergenic
CTCTGCTACAATGCCTCCTG+AGG 0.521626 2.3:+49453640 MS.gene051234:CDS
GAGAACTATCTCCATCGTAT+TGG 0.523557 2.3:+49454064 MS.gene051234:CDS
AGATAGTTCTCAGGCTGTGT+TGG 0.525373 2.3:-49454052 None:intergenic
ATCGTATTGGTCGTAGTGGA+AGG 0.529668 2.3:+49454077 MS.gene051234:CDS
GCGCTGATCTTCACGAACAC+TGG 0.540854 2.3:-49452691 None:intergenic
CTCCATCGTATTGGTCGTAG+TGG 0.541717 2.3:+49454073 MS.gene051234:CDS
GTCGTAGTGGAAGGTTTGGA+AGG 0.547854 2.3:+49454086 MS.gene051234:CDS
CGTGATGAGCTCACCTTGGA+GGG 0.552554 2.3:+49453716 MS.gene051234:CDS
CATGGCAGGCGTTGCACCAG+AGG 0.552942 2.3:+49451573 MS.gene051234:CDS
CTGCAAAATCCCAGAGCAGA+AGG 0.553669 2.3:-49452532 None:intergenic
CAGACTCACAACTGATGCAC+AGG 0.557617 2.3:+49451783 MS.gene051234:intron
ATACGATGGAGATAGTTCTC+AGG 0.557654 2.3:-49454061 None:intergenic
CTCAGCAACACACGGAGACA+TGG 0.558453 2.3:+49453901 MS.gene051234:CDS
AGTGGAAGGTTTGGAAGGAA+AGG 0.560979 2.3:+49454091 MS.gene051234:CDS
CTGAGGCACTTGAGATCACA+AGG 0.563772 2.3:+49453657 MS.gene051234:CDS
TTATGTCAACGTTGATAAGG+AGG 0.566533 2.3:+49453751 MS.gene051234:CDS
TGTGACCGAATGCCAAGCCT+TGG 0.571337 2.3:+49452569 MS.gene051234:CDS
TCAACGTTGATAAGGAGGAA+TGG 0.577711 2.3:+49453756 MS.gene051234:CDS
CAAAATGTTCGTATTGGACG+AGG 0.578200 2.3:+49452803 MS.gene051234:CDS
CGCTTCACAAGAATCCTCAC+AGG 0.579557 2.3:-49453695 None:intergenic
TTGCTGAGACAGTGTGGTCA+CGG 0.580925 2.3:-49453886 None:intergenic
ATGGCAGGCGTTGCACCAGA+GGG 0.587343 2.3:+49451574 MS.gene051234:CDS
GGAATAGTTCCATTTATCAA+GGG 0.589236 2.3:+49452462 MS.gene051234:CDS
AGAAGTTCAGCAACATTGGA+AGG 0.591345 2.3:-49454199 None:intergenic
AGCCATCAGCTATTCAGCAA+CGG 0.592072 2.3:+49452439 MS.gene051234:CDS
GCATGTCAAATACACGTCCA+GGG 0.601935 2.3:-49452749 None:intergenic
GCTGATGAGATGCTTTCTCG+TGG 0.610128 2.3:+49452825 MS.gene051234:CDS
ATCGGTAGTTATCAAAACAC+GGG 0.610300 2.3:-49453972 None:intergenic
CACACTGTCTCAGCAACACA+CGG 0.611599 2.3:+49453893 MS.gene051234:CDS
TGGAGATTATCTAGGTGTGA+AGG 0.612268 2.3:+49452647 MS.gene051234:CDS
TAGGTGCCAAGACCAAGGCT+TGG 0.617896 2.3:-49452581 None:intergenic
GATCGGTAGTTATCAAAACA+CGG 0.623883 2.3:-49453973 None:intergenic
GATCAGCGCATTCTATCAAG+CGG 0.624396 2.3:+49452705 MS.gene051234:CDS
AGACATGGACCAAAATACTA+GGG 0.628384 2.3:+49453916 MS.gene051234:CDS
AATACCACGAGCCAGAAGAT+CGG 0.631247 2.3:-49453990 None:intergenic
AAGGTGCATGCTTGTGTCGG+AGG 0.634488 2.3:+49452666 MS.gene051234:CDS
GCTTGCTCAGCAGATTGAGA+AGG 0.634804 2.3:+49452611 MS.gene051234:CDS
GTGAAGGTGCATGCTTGTGT+CGG 0.636750 2.3:+49452663 MS.gene051234:CDS
TTCCACTACGACCAATACGA+TGG 0.638034 2.3:-49454075 None:intergenic
GTGATCTCAAGTGCCTCAGG+AGG 0.642550 2.3:-49453653 None:intergenic
CTTCTTCACGTCTTACGATG+AGG 0.644748 2.3:+49451807 MS.gene051234:CDS
ACTACCGATCTTCTGGCTCG+TGG 0.651230 2.3:+49453986 MS.gene051234:CDS
AACAGGCTCAGTCTGGAACA+GGG 0.652293 2.3:+49452499 MS.gene051234:CDS
ACGAGTAGGTGCCAAGACCA+AGG 0.655523 2.3:-49452586 None:intergenic
TGCTGAGCAAGCTCACGAGT+AGG 0.660506 2.3:-49452600 None:intergenic
AAACTGCTTGATACCCTCCA+AGG 0.661421 2.3:-49453729 None:intergenic
TTGCCATCTAAGATTCAAGT+CGG 0.662032 2.3:+49453611 MS.gene051234:CDS
GAAGCGTGATGAGCTCACCT+TGG 0.671691 2.3:+49453712 MS.gene051234:CDS
CATGTCAAATACACGTCCAG+GGG 0.696747 2.3:-49452748 None:intergenic
TTGCAAGAGAATCTTCTCAG+AGG 0.702805 2.3:+49451856 MS.gene051234:CDS
AAACACGGGAAGATCCAGAA+CGG 0.712720 2.3:-49453958 None:intergenic
CGTGTGTTGCTGAGACAGTG+TGG 0.721187 2.3:-49453892 None:intergenic
AGTTCATGAACAAACCTGTG+AGG 0.726622 2.3:+49453681 MS.gene051234:CDS
CCATCAGCTATTCAGCAACG+GGG 0.741503 2.3:+49452441 MS.gene051234:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGTTAAAAAACAAATTA+AGG + chr2.3:49453013-49453032 MS.gene051234:intron 10.0%
!!! TTCTTTATAATTTTTGAAAT+TGG + chr2.3:49452111-49452130 MS.gene051234:intron 10.0%
!! AAGAATTAAAATGTTATTGT+TGG + chr2.3:49451987-49452006 MS.gene051234:intron 15.0%
!! AGAATTAAAATGTTATTGTT+GGG + chr2.3:49451988-49452007 MS.gene051234:intron 15.0%
!! CAATAATATTACTATTTACT+GGG - chr2.3:49453407-49453426 None:intergenic 15.0%
!! TGGTTAAAAAAATTAAAGAT+TGG - chr2.3:49451937-49451956 None:intergenic 15.0%
!! TTATTTATCAATAAAAGACT+CGG - chr2.3:49452366-49452385 None:intergenic 15.0%
!! TTTCTTAATGGAAAATATTA+AGG + chr2.3:49452892-49452911 MS.gene051234:intron 15.0%
!!! AATATATTTCATTTTGAAAC+AGG - chr2.3:49453208-49453227 None:intergenic 15.0%
!!! ATTTCTAAAAAATTAATCCT+CGG - chr2.3:49453345-49453364 None:intergenic 15.0%
!!! TTTAATTTTTTTAACCAGAT+GGG + chr2.3:49451940-49451959 MS.gene051234:intron 15.0%
!! AAATAAAAACAAAGCTATGA+CGG - chr2.3:49451657-49451676 None:intergenic 20.0%
!! ACAAATCAAACTAGTTATTA+AGG - chr2.3:49452403-49452422 None:intergenic 20.0%
!! CAGATACAATACAAAATTTA+AGG - chr2.3:49452024-49452043 None:intergenic 20.0%
!! CCAATAATATTACTATTTAC+TGG - chr2.3:49453408-49453427 None:intergenic 20.0%
!! CCAGTAAATAGTAATATTAT+TGG + chr2.3:49453405-49453424 MS.gene051234:intron 20.0%
!! GTTAAAAAACAAATTAAGGT+GGG + chr2.3:49453017-49453036 MS.gene051234:intron 20.0%
!! TAGATCTGAAAATAAAATGA+AGG - chr2.3:49453575-49453594 None:intergenic 20.0%
!! TGTTAAAAAACAAATTAAGG+TGG + chr2.3:49453016-49453035 MS.gene051234:intron 20.0%
!!! AAGTTTTTATAGTAAATGAG+AGG - chr2.3:49452264-49452283 None:intergenic 20.0%
!!! CACTTTCTAAAATTTCTTAA+TGG + chr2.3:49452880-49452899 MS.gene051234:intron 20.0%
!!! CTTAAATTTTGTATTGTATC+TGG + chr2.3:49452022-49452041 MS.gene051234:intron 20.0%
!!! CTTTAATTTTTTTAACCAGA+TGG + chr2.3:49451939-49451958 MS.gene051234:intron 20.0%
!!! TTTAGAAATTGTTTGAAACA+TGG + chr2.3:49453356-49453375 MS.gene051234:intron 20.0%
! AAAAGTAGAAATCGAACTTA+TGG - chr2.3:49452153-49452172 None:intergenic 25.0%
! AAATAGGAAGCAAAACAAAA+CGG - chr2.3:49452080-49452099 None:intergenic 25.0%
! AAATTAAAGATTGGTACAGA+AGG - chr2.3:49451928-49451947 None:intergenic 25.0%
! AATAAAAACAAAGCTATGAC+GGG - chr2.3:49451656-49451675 None:intergenic 25.0%
! ATGGGAATCTTAAATTTCTA+TGG - chr2.3:49453110-49453129 None:intergenic 25.0%
! CAGGTTAAAAAATTATTCTC+TGG - chr2.3:49453189-49453208 None:intergenic 25.0%
! TCAAAATCTTCAAGATTGAA+AGG - chr2.3:49453307-49453326 None:intergenic 25.0%
! TTACATCAAAATGTTCGTAT+TGG + chr2.3:49452797-49452816 MS.gene051234:CDS 25.0%
!! ATGCGTACATTAATTCTTTT+AGG - chr2.3:49453545-49453564 None:intergenic 25.0%
!! GAAAGTGTACAAAAATTAGA+AGG - chr2.3:49452867-49452886 None:intergenic 25.0%
!!! ACTAGTTTGATTTGTGTTTT+AGG + chr2.3:49452408-49452427 MS.gene051234:intron 25.0%
!!! TATGATAGTTTTGATGCTAT+GGG + chr2.3:49451832-49451851 MS.gene051234:CDS 25.0%
!!! TTCTTGTTTTTGTCTAACTT+CGG + chr2.3:49451738-49451757 MS.gene051234:intron 25.0%
!!! TTTTAGGACAATAAATCAGT+AGG - chr2.3:49453529-49453548 None:intergenic 25.0%
AAAGTCATACAACATTAGCA+AGG - chr2.3:49452305-49452324 None:intergenic 30.0%
AAATCTTCAAGATAGCTAAG+AGG - chr2.3:49453494-49453513 None:intergenic 30.0%
AAGAAACAACCGTGATAAAT+AGG - chr2.3:49452096-49452115 None:intergenic 30.0%
AATAGGAAGCAAAACAAAAC+GGG - chr2.3:49452079-49452098 None:intergenic 30.0%
ACAGAAACAAGAACAATCTT+GGG - chr2.3:49452188-49452207 None:intergenic 30.0%
AGGATATACTACGTAGAAAA+AGG - chr2.3:49452244-49452263 None:intergenic 30.0%
ATAAAAACAAAGCTATGACG+GGG - chr2.3:49451655-49451674 None:intergenic 30.0%
ATAGTACAAGACTGTGTTTA+AGG - chr2.3:49453435-49453454 None:intergenic 30.0%
GGAATAGTTCCATTTATCAA+GGG + chr2.3:49452462-49452481 MS.gene051234:CDS 30.0%
GTTAACAAAAATGACACTCT+GGG - chr2.3:49453825-49453844 None:intergenic 30.0%
TACAGAAACAAGAACAATCT+TGG - chr2.3:49452189-49452208 None:intergenic 30.0%
TAGTACAAGACTGTGTTTAA+GGG - chr2.3:49453434-49453453 None:intergenic 30.0%
TGTTAACAAAAATGACACTC+TGG - chr2.3:49453826-49453845 None:intergenic 30.0%
TTGTGTAGTAAGGATAAAAG+TGG + chr2.3:49453043-49453062 MS.gene051234:intron 30.0%
! AAACACAGTCTTGTACTATT+AGG + chr2.3:49453436-49453455 MS.gene051234:intron 30.0%
! AGTCTTGTACTATTAGGATT+AGG + chr2.3:49453442-49453461 MS.gene051234:intron 30.0%
! GTTTTATGTCAACGTTGATA+AGG + chr2.3:49453748-49453767 MS.gene051234:CDS 30.0%
! GTTTTGCTTCCTATTTATCA+CGG + chr2.3:49452084-49452103 MS.gene051234:intron 30.0%
!! ACGAACATTTTGATGTAATC+TGG - chr2.3:49452795-49452814 None:intergenic 30.0%
!! TGATAATGTCCCTAGTATTT+TGG - chr2.3:49453928-49453947 None:intergenic 30.0%
!!! CTATGATAGTTTTGATGCTA+TGG + chr2.3:49451831-49451850 MS.gene051234:CDS 30.0%
!!! GATCTTTATTTTACAAACCG+AGG + chr2.3:49453325-49453344 MS.gene051234:intron 30.0%
!!! TCTTGTTTTTGTCTAACTTC+GGG + chr2.3:49451739-49451758 MS.gene051234:intron 30.0%
AACGGGTATATTTCACAGTA+TGG - chr2.3:49452062-49452081 None:intergenic 35.0%
ACATCAAGACCCTTGATAAA+TGG - chr2.3:49452474-49452493 None:intergenic 35.0%
AGACATGGACCAAAATACTA+GGG + chr2.3:49453916-49453935 MS.gene051234:CDS 35.0%
ATCGGTAGTTATCAAAACAC+GGG - chr2.3:49453975-49453994 None:intergenic 35.0%
CTGTGATCTTTATGAGACTT+TGG + chr2.3:49453793-49453812 MS.gene051234:CDS 35.0%
GATAAGAACAATGTTCCTAG+AGG - chr2.3:49452962-49452981 None:intergenic 35.0%
GATCGGTAGTTATCAAAACA+CGG - chr2.3:49453976-49453995 None:intergenic 35.0%
GGGAATAGTTCCATTTATCA+AGG + chr2.3:49452461-49452480 MS.gene051234:CDS 35.0%
GGTATATTTCACAGTATGGA+AGG - chr2.3:49452058-49452077 None:intergenic 35.0%
GTACTAGTAATCACATTCCT+AGG + chr2.3:49452914-49452933 MS.gene051234:intron 35.0%
TAAGTTCAAGCTCGAGAAAT+GGG - chr2.3:49453128-49453147 None:intergenic 35.0%
TCAACACATTGTAGAACTTC+TGG - chr2.3:49454168-49454187 None:intergenic 35.0%
! TTATGTCAACGTTGATAAGG+AGG + chr2.3:49453751-49453770 MS.gene051234:CDS 35.0%
! TTGCCATCTAAGATTCAAGT+CGG + chr2.3:49453611-49453630 MS.gene051234:CDS 35.0%
! TTTGATAACTACCGATCTTC+TGG + chr2.3:49453979-49453998 MS.gene051234:CDS 35.0%
! TTTTGTTAACACCAGACGAA+AGG + chr2.3:49453835-49453854 MS.gene051234:CDS 35.0%
!! GTTCTACAATGTGTTGATTG+AGG + chr2.3:49454171-49454190 MS.gene051234:CDS 35.0%
!!! TTCTCGTGGTTTTAAAGATC+AGG + chr2.3:49452839-49452858 MS.gene051234:CDS 35.0%
AGAAGTTCAGCAACATTGGA+AGG - chr2.3:49454202-49454221 None:intergenic 40.0%
AGCACGAAAAAAATCCCATC+TGG - chr2.3:49451957-49451976 None:intergenic 40.0%
AGGTGGGAAATTGTGTAGTA+AGG + chr2.3:49453033-49453052 MS.gene051234:intron 40.0%
AGTTCATGAACAAACCTGTG+AGG + chr2.3:49453681-49453700 MS.gene051234:CDS 40.0%
ATACGATGGAGATAGTTCTC+AGG - chr2.3:49454064-49454083 None:intergenic 40.0%
CAAAATGTTCGTATTGGACG+AGG + chr2.3:49452803-49452822 MS.gene051234:CDS 40.0%
CTAAGTTCAAGCTCGAGAAA+TGG - chr2.3:49453129-49453148 None:intergenic 40.0%
GAAACAAACCCTACTACTGT+CGG + chr2.3:49453253-49453272 MS.gene051234:intron 40.0%
GAGAACTATCTCCATCGTAT+TGG + chr2.3:49454064-49454083 MS.gene051234:CDS 40.0%
GAGACATGGACCAAAATACT+AGG + chr2.3:49453915-49453934 MS.gene051234:CDS 40.0%
GGGTCTTGATGTTATACAAC+AGG + chr2.3:49452482-49452501 MS.gene051234:CDS 40.0%
GTCATACAACATTAGCAAGG+TGG - chr2.3:49452302-49452321 None:intergenic 40.0%
TCACAGAAGTTCAGCAACAT+TGG - chr2.3:49454206-49454225 None:intergenic 40.0%
TCGAGCTTGAACTTAGAGTA+TGG + chr2.3:49453133-49453152 MS.gene051234:intron 40.0%
TGAGTCTGTAGATGCATTGA+AGG - chr2.3:49451771-49451790 None:intergenic 40.0%
TGATGTTCAGCAAGTGTCTT+TGG + chr2.3:49454012-49454031 MS.gene051234:CDS 40.0%
TGGAGATTATCTAGGTGTGA+AGG + chr2.3:49452647-49452666 MS.gene051234:CDS 40.0%
TTGCAAGAGAATCTTCTCAG+AGG + chr2.3:49451856-49451875 MS.gene051234:CDS 40.0%
! ACTCCGACTTGAATCTTAGA+TGG - chr2.3:49453617-49453636 None:intergenic 40.0%
! CAGTAGTAGGGTTTGTTTCA+AGG - chr2.3:49453252-49453271 None:intergenic 40.0%
! TCAACGTTGATAAGGAGGAA+TGG + chr2.3:49453756-49453775 MS.gene051234:CDS 40.0%
! TTTTGCTACCGACAGTAGTA+GGG - chr2.3:49453264-49453283 None:intergenic 40.0%
!! ATTCCTAGGTATGCTGTTTC+TGG + chr2.3:49452928-49452947 MS.gene051234:intron 40.0%
!! TTCCTAGGTATGCTGTTTCT+GGG + chr2.3:49452929-49452948 MS.gene051234:intron 40.0%
AAACACGGGAAGATCCAGAA+CGG - chr2.3:49453961-49453980 None:intergenic 45.0%
AAACTGCTTGATACCCTCCA+AGG - chr2.3:49453732-49453751 None:intergenic 45.0%
AATACCACGAGCCAGAAGAT+CGG - chr2.3:49453993-49454012 None:intergenic 45.0%
AGATAGTTCTCAGGCTGTGT+TGG - chr2.3:49454055-49454074 None:intergenic 45.0%
AGCATGTCAAATACACGTCC+AGG - chr2.3:49452753-49452772 None:intergenic 45.0%
AGCCATCAGCTATTCAGCAA+CGG + chr2.3:49452439-49452458 MS.gene051234:CDS 45.0%
AGCGGTGTTCATGTTGTTGT+TGG + chr2.3:49452723-49452742 MS.gene051234:CDS 45.0%
AGTGGAAGGTTTGGAAGGAA+AGG + chr2.3:49454091-49454110 MS.gene051234:CDS 45.0%
ATCATGCGTGAATTCCGTTC+TGG + chr2.3:49453944-49453963 MS.gene051234:CDS 45.0%
CATGTCAAATACACGTCCAG+GGG - chr2.3:49452751-49452770 None:intergenic 45.0%
CGTGCACTTGGAGATTATCT+AGG + chr2.3:49452639-49452658 MS.gene051234:CDS 45.0%
CTTCTTCACGTCTTACGATG+AGG + chr2.3:49451807-49451826 MS.gene051234:CDS 45.0%
GAATCTTAGATGGCAACAGC+TGG - chr2.3:49453607-49453626 None:intergenic 45.0%
GATAGTTCTCAGGCTGTGTT+GGG - chr2.3:49454054-49454073 None:intergenic 45.0%
GATCAGCGCATTCTATCAAG+CGG + chr2.3:49452705-49452724 MS.gene051234:CDS 45.0%
GCATGTCAAATACACGTCCA+GGG - chr2.3:49452752-49452771 None:intergenic 45.0%
GTTATACAACAGGCTCAGTC+TGG + chr2.3:49452492-49452511 MS.gene051234:CDS 45.0%
TTCCACTACGACCAATACGA+TGG - chr2.3:49454078-49454097 None:intergenic 45.0%
TTCCCAGAAACAGCATACCT+AGG - chr2.3:49452934-49452953 None:intergenic 45.0%
! ATCGTATTGGTCGTAGTGGA+AGG + chr2.3:49454077-49454096 MS.gene051234:CDS 45.0%
! ATTGGTCGTAGTGGAAGGTT+TGG + chr2.3:49454082-49454101 MS.gene051234:CDS 45.0%
! GTTTTGCTACCGACAGTAGT+AGG - chr2.3:49453265-49453284 None:intergenic 45.0%
! TTTCTGGGAATTGCACCTCT+AGG + chr2.3:49452944-49452963 MS.gene051234:intron 45.0%
!! CTCAGAGGCATTTACGCATA+TGG + chr2.3:49451871-49451890 MS.gene051234:CDS 45.0%
AAGACTGCAACCTTCTGCTC+TGG + chr2.3:49452522-49452541 MS.gene051234:CDS 50.0%
ACACCAGACGAAAGGTTGAC+TGG + chr2.3:49453843-49453862 MS.gene051234:CDS 50.0%
AGACTGCAACCTTCTGCTCT+GGG + chr2.3:49452523-49452542 MS.gene051234:CDS 50.0%
CAAGACCAAGGCTTGGCATT+CGG - chr2.3:49452577-49452596 None:intergenic 50.0%
CACACTGTCTCAGCAACACA+CGG + chr2.3:49453893-49453912 MS.gene051234:CDS 50.0%
CAGACTCACAACTGATGCAC+AGG + chr2.3:49451783-49451802 MS.gene051234:intron 50.0%
CCATCAGCTATTCAGCAACG+GGG + chr2.3:49452441-49452460 MS.gene051234:CDS 50.0%
CGCTTCACAAGAATCCTCAC+AGG - chr2.3:49453698-49453717 None:intergenic 50.0%
CTGCAAAATCCCAGAGCAGA+AGG - chr2.3:49452535-49452554 None:intergenic 50.0%
CTTGTGATCTCAAGTGCCTC+AGG - chr2.3:49453659-49453678 None:intergenic 50.0%
GCATCAAACTGTGAACCCTC+TGG - chr2.3:49451592-49451611 None:intergenic 50.0%
GCCATCAGCTATTCAGCAAC+GGG + chr2.3:49452440-49452459 MS.gene051234:CDS 50.0%
GCTGATGAGATGCTTTCTCG+TGG + chr2.3:49452825-49452844 MS.gene051234:CDS 50.0%
GCTTGCTCAGCAGATTGAGA+AGG + chr2.3:49452611-49452630 MS.gene051234:CDS 50.0%
TTGCTGAGACAGTGTGGTCA+CGG - chr2.3:49453889-49453908 None:intergenic 50.0%
! AACAGGCTCAGTCTGGAACA+GGG + chr2.3:49452499-49452518 MS.gene051234:CDS 50.0%
! CATGTTGTTGTTGGTACCCC+TGG + chr2.3:49452732-49452751 MS.gene051234:CDS 50.0%
! CTCCATCGTATTGGTCGTAG+TGG + chr2.3:49454073-49454092 MS.gene051234:CDS 50.0%
! CTGAGGCACTTGAGATCACA+AGG + chr2.3:49453657-49453676 MS.gene051234:CDS 50.0%
! GTCGTAGTGGAAGGTTTGGA+AGG + chr2.3:49454086-49454105 MS.gene051234:CDS 50.0%
! GTGAAGGTGCATGCTTGTGT+CGG + chr2.3:49452663-49452682 MS.gene051234:CDS 50.0%
AAGGTGCATGCTTGTGTCGG+AGG + chr2.3:49452666-49452685 MS.gene051234:CDS 55.0%
ACGAGTAGGTGCCAAGACCA+AGG - chr2.3:49452589-49452608 None:intergenic 55.0%
CAGCCAGTCAACCTTTCGTC+TGG - chr2.3:49453849-49453868 None:intergenic 55.0%
CCCCGTTGCTGAATAGCTGA+TGG - chr2.3:49452444-49452463 None:intergenic 55.0%
CGAATGCCAAGCCTTGGTCT+TGG + chr2.3:49452575-49452594 MS.gene051234:CDS 55.0%
CGTGATGAGCTCACCTTGGA+GGG + chr2.3:49453716-49453735 MS.gene051234:CDS 55.0%
CTCAGCAACACACGGAGACA+TGG + chr2.3:49453901-49453920 MS.gene051234:CDS 55.0%
CTCTGCTACAATGCCTCCTG+AGG + chr2.3:49453640-49453659 MS.gene051234:CDS 55.0%
GAAGCGTGATGAGCTCACCT+TGG + chr2.3:49453712-49453731 MS.gene051234:CDS 55.0%
GAGAAGGTCATGCGTGCACT+TGG + chr2.3:49452627-49452646 MS.gene051234:CDS 55.0%
GTGATCTCAAGTGCCTCAGG+AGG - chr2.3:49453656-49453675 None:intergenic 55.0%
TAGGTGCCAAGACCAAGGCT+TGG - chr2.3:49452584-49452603 None:intergenic 55.0%
TGCTGAGCAAGCTCACGAGT+AGG - chr2.3:49452603-49452622 None:intergenic 55.0%
TGTGACCGAATGCCAAGCCT+TGG + chr2.3:49452569-49452588 MS.gene051234:CDS 55.0%
! CAACAGGCTCAGTCTGGAAC+AGG + chr2.3:49452498-49452517 MS.gene051234:CDS 55.0%
! CGTGTGTTGCTGAGACAGTG+TGG - chr2.3:49453895-49453914 None:intergenic 55.0%
! GCGCTGATCTTCACGAACAC+TGG - chr2.3:49452694-49452713 None:intergenic 55.0%
!! ACTACCGATCTTCTGGCTCG+TGG + chr2.3:49453986-49454005 MS.gene051234:CDS 55.0%
GCGTGATGAGCTCACCTTGG+AGG + chr2.3:49453715-49453734 MS.gene051234:CDS 60.0%
! ATGGCAGGCGTTGCACCAGA+GGG + chr2.3:49451574-49451593 MS.gene051234:CDS 60.0%
! CATGGCAGGCGTTGCACCAG+AGG + chr2.3:49451573-49451592 MS.gene051234:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 49451572 49454225 49451572 ID=MS.gene051234
chr2.3 mRNA 49451572 49454225 49451572 ID=MS.gene051234.t1;Parent=MS.gene051234
chr2.3 exon 49451572 49451641 49451572 ID=MS.gene051234.t1.exon1;Parent=MS.gene051234.t1
chr2.3 CDS 49451572 49451641 49451572 ID=cds.MS.gene051234.t1;Parent=MS.gene051234.t1
chr2.3 exon 49451786 49451892 49451786 ID=MS.gene051234.t1.exon2;Parent=MS.gene051234.t1
chr2.3 CDS 49451786 49451892 49451786 ID=cds.MS.gene051234.t1;Parent=MS.gene051234.t1
chr2.3 exon 49452430 49452860 49452430 ID=MS.gene051234.t1.exon3;Parent=MS.gene051234.t1
chr2.3 CDS 49452430 49452860 49452430 ID=cds.MS.gene051234.t1;Parent=MS.gene051234.t1
chr2.3 exon 49453590 49454225 49453590 ID=MS.gene051234.t1.exon4;Parent=MS.gene051234.t1
chr2.3 CDS 49453590 49454225 49453590 ID=cds.MS.gene051234.t1;Parent=MS.gene051234.t1
Gene Sequence

>MS.gene051234

TCATGGCAGGCGTTGCACCAGAGGGTTCACAGTTTGATGCTAAGCAGTTTGATTCAAAAATGAATGAGTTGTAAGTACAACCCCGTCATAGCTTTGTTTTTATTTTTATTTTTTATTTTTTTAAGTGAAGTATACAATTCTGTTTTTTTAGCGTTTAGTGTTACTATTCTTGTTTTTGTCTAACTTCGGGTACATACCTTCAATGCATCTACAGACTCACAACTGATGCACAGGACTTCTTCACGTCTTACGATGAGGTCTATGATAGTTTTGATGCTATGGGCTTGCAAGAGAATCTTCTCAGAGGCATTTACGCATATGGTAGATTTAATCTTTTCTGTTCTTTTCTACTTCCTTCTGTACCAATCTTTAATTTTTTTAACCAGATGGGATTTTTTTCGTGCTTTCATCTTCTAAGAATTAAAATGTTATTGTTGGGCTCTGTTAGTCCTTAAATTTTGTATTGTATCTGGCAGCTAAAAACCTTCCATACTGTGAAATATACCCGTTTTGTTTTGCTTCCTATTTATCACGGTTGTTTCTTTATAATTTTTGAAATTGGAATATTTTTATCACTACCATAAGTTCGATTTCTACTTTTTCATAAAAAAAACCCAAGATTGTTCTTGTTTCTGTATGAGTTTTATGCATGTAAAATGAATCTATCATCCTTTTTCTACGTAGTATATCCTCTCATTTACTATAAAAACTTTTTGCATATTTTATTCCACCTTGCTAATGTTGTATGACTTTATTCAGCTGTATTTTTGTACAAACAAGTATTTGCACTGCCGAGTCTTTTATTGATAAATAAATGTACACATAAATCCTTAATAACTAGTTTGATTTGTGTTTTAGGTTTTGAGAAGCCATCAGCTATTCAGCAACGGGGAATAGTTCCATTTATCAAGGGTCTTGATGTTATACAACAGGCTCAGTCTGGAACAGGGAAGACTGCAACCTTCTGCTCTGGGATTTTGCAGCAACTTGACTACAGTGTGACCGAATGCCAAGCCTTGGTCTTGGCACCTACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTCATGCGTGCACTTGGAGATTATCTAGGTGTGAAGGTGCATGCTTGTGTCGGAGGAACCAGTGTTCGTGAAGATCAGCGCATTCTATCAAGCGGTGTTCATGTTGTTGTTGGTACCCCTGGACGTGTATTTGACATGCTGCGCAGACAGTCGCTTCGACCAGATTACATCAAAATGTTCGTATTGGACGAGGCTGATGAGATGCTTTCTCGTGGTTTTAAAGATCAGGTACCTTCTAATTTTTGTACACTTTCTAAAATTTCTTAATGGAAAATATTAAGGTACTAGTAATCACATTCCTAGGTATGCTGTTTCTGGGAATTGCACCTCTAGGAACATTGTTCTTATCTATTCATAATTCTAGTAATGTTTTCAAAATTTATTGTTAAAAAACAAATTAAGGTGGGAAATTGTGTAGTAAGGATAAAAGTGGAAAATTATAGTTTGATGTGAGTTTGAAAATAACTGCTCTCTCCATAGAAATTTAAGATTCCCATTTCTCGAGCTTGAACTTAGAGTATGGATATATTACAATCATGTAAATGTTCTAATGCCAGAGAATAATTTTTTAACCTGTTTCAAAATGAAATATATTTTTTGTGAATGATTTTTCATACCTTGAAACAAACCCTACTACTGTCGGTAGCAAAACTAAAATGTCGAATTAAGTTCCTTTCAATCTTGAAGATTTTGATCTTTATTTTACAAACCGAGGATTAATTTTTTAGAAATTGTTTGAAACATGGAAATATACATTCTGAAGCTCACTATCCCAGTAAATAGTAATATTATTGGATGCCCTTAAACACAGTCTTGTACTATTAGGATTAGGAGCACAACTAAAACTTGAAAAAAGTTCCTCTTAGCTATCTTGAAGATTTGATTTTTATTTGCCTACTGATTTATTGTCCTAAAAGAATTAATGTACGCATGTTATAACCTTCATTTTATTTTCAGATCTATGATATATTCCAGCTGTTGCCATCTAAGATTCAAGTCGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATCAAGCAGTTTTATGTCAACGTTGATAAGGAGGAATGGAAGCTCGACACACTCTGTGATCTTTATGAGACTTTGGCTATCACCCAGAGTGTCATTTTTGTTAACACCAGACGAAAGGTTGACTGGCTGACTGACAAGATGAGAAGCCGTGACCACACTGTCTCAGCAACACACGGAGACATGGACCAAAATACTAGGGACATTATCATGCGTGAATTCCGTTCTGGATCTTCCCGTGTTTTGATAACTACCGATCTTCTGGCTCGTGGTATTGATGTTCAGCAAGTGTCTTTGGTTATAAATTATGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGAAGGAAAGGTGTTGCTATTAACTTCGTCACAACTGATGACGAAAGAATGCTGAGTGACATCCAGAAGTTCTACAATGTGTTGATTGAGGAGCTGCCTTCCAATGTTGCTGAACTTCTGTGA

Protein sequence

>MS.gene051234.t1

SWQALHQRVHSLMLSSLIQKUMSYSQLMHRTSSRLTMRSMIVLMLWACKRIFSEAFTHMVLRSHQLFSNGEUFHLSRVLMLYNRLSLEQGRLQPSALGFCSNLTTVUPNAKPWSWHLLVSLLSRLRRSCVHLEIIUVURCMLVSEEPVFVKISAFYQAVFMLLLVPLDVYLTCCADSRFDQITSKCSYWTRLMRCFLVVLKIRSMIYSSCCHLRFKSEFSLLQCLLRHLRSQGSSUTNLUGFLUSVMSSPWRVSSSFMSTLIRRNGSSTHSVIFMRLWLSPRVSFLLTPDERLTGULTRUEAVTTLSQQHTETWTKILGTLSCVNSVLDLPVFUULPIFWLVVLMFSKCLWLUIMISQHSLRTISIVLVVVEGLEGKVLLLTSSQLMTKECUVTSRSSTMCULRSCLPMLLNFC