Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63244.t1 | XP_013445749.1 | 100 | 274 | 0 | 0 | 1 | 274 | 9 | 282 | 1.40E-130 | 475.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63244.t1 | Q8LC03 | 61.9 | 281 | 99 | 5 | 1 | 274 | 15 | 294 | 2.5e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63244.t1 | A0A072U1W4 | 100.0 | 274 | 0 | 0 | 1 | 274 | 9 | 282 | 1.0e-130 | 475.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63244.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene63244 | 0.817005 | 4.13E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene63244 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene63244 | 0.86355 | 2.30E-64 | -1.69E-46 |
| MS.gene055891 | MS.gene63244 | 0.831981 | 1.23E-55 | -1.69E-46 |
| MS.gene056228 | MS.gene63244 | 0.804164 | 2.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63244.t1 | MTR_8g468210 | 100.000 | 274 | 0 | 0 | 1 | 274 | 9 | 282 | 0.0 | 567 |
| MS.gene63244.t1 | MTR_5g039000 | 81.655 | 278 | 41 | 6 | 1 | 274 | 12 | 283 | 5.50e-145 | 408 |
| MS.gene63244.t1 | MTR_6g011610 | 51.211 | 289 | 90 | 10 | 5 | 271 | 13 | 272 | 6.07e-82 | 248 |
| MS.gene63244.t1 | MTR_7g010020 | 53.506 | 271 | 104 | 9 | 6 | 267 | 14 | 271 | 9.10e-80 | 242 |
| MS.gene63244.t1 | MTR_6g011610 | 48.718 | 273 | 102 | 8 | 5 | 271 | 13 | 253 | 1.05e-72 | 223 |
| MS.gene63244.t1 | MTR_6g007647 | 64.948 | 97 | 34 | 0 | 68 | 164 | 32 | 128 | 2.39e-39 | 138 |
| MS.gene63244.t1 | MTR_3g086790 | 51.656 | 151 | 60 | 4 | 25 | 172 | 26 | 166 | 3.91e-39 | 139 |
| MS.gene63244.t1 | MTR_6g007647 | 64.948 | 97 | 34 | 0 | 68 | 164 | 66 | 162 | 6.83e-39 | 137 |
| MS.gene63244.t1 | MTR_3g080100 | 49.689 | 161 | 62 | 3 | 56 | 205 | 7 | 159 | 6.17e-38 | 133 |
| MS.gene63244.t1 | MTR_3g080100 | 49.689 | 161 | 62 | 3 | 56 | 205 | 46 | 198 | 1.07e-37 | 134 |
| MS.gene63244.t1 | MTR_5g038280 | 66.667 | 96 | 32 | 0 | 69 | 164 | 87 | 182 | 4.92e-37 | 134 |
| MS.gene63244.t1 | MTR_4g107650 | 58.475 | 118 | 46 | 2 | 44 | 161 | 73 | 187 | 8.06e-37 | 133 |
| MS.gene63244.t1 | MTR_8g089895 | 62.245 | 98 | 37 | 0 | 67 | 164 | 52 | 149 | 2.45e-36 | 131 |
| MS.gene63244.t1 | MTR_8g469430 | 65.625 | 96 | 33 | 0 | 69 | 164 | 89 | 184 | 3.19e-36 | 130 |
| MS.gene63244.t1 | MTR_7g103340 | 45.652 | 138 | 59 | 2 | 36 | 164 | 21 | 151 | 6.11e-33 | 120 |
| MS.gene63244.t1 | MTR_1g061660 | 52.830 | 106 | 41 | 2 | 57 | 162 | 49 | 145 | 8.66e-28 | 107 |
| MS.gene63244.t1 | MTR_3g092150 | 53.846 | 91 | 42 | 0 | 71 | 161 | 40 | 130 | 3.95e-27 | 105 |
| MS.gene63244.t1 | MTR_8g026960 | 38.000 | 150 | 82 | 3 | 76 | 214 | 41 | 190 | 5.89e-25 | 100 |
| MS.gene63244.t1 | MTR_4g100550 | 40.496 | 121 | 69 | 1 | 35 | 155 | 89 | 206 | 1.04e-20 | 89.4 |
| MS.gene63244.t1 | MTR_5g019680 | 47.778 | 90 | 47 | 0 | 69 | 158 | 53 | 142 | 2.52e-19 | 84.0 |
| MS.gene63244.t1 | MTR_5g019650 | 46.809 | 94 | 50 | 0 | 69 | 162 | 53 | 146 | 3.07e-19 | 84.3 |
| MS.gene63244.t1 | MTR_4g097600 | 45.263 | 95 | 52 | 0 | 61 | 155 | 119 | 213 | 1.08e-18 | 83.6 |
| MS.gene63244.t1 | MTR_5g013010 | 41.463 | 123 | 70 | 2 | 35 | 155 | 100 | 222 | 1.22e-18 | 84.0 |
| MS.gene63244.t1 | MTR_7g093430 | 46.939 | 98 | 48 | 1 | 69 | 166 | 160 | 253 | 4.42e-18 | 82.4 |
| MS.gene63244.t1 | MTR_5g014890 | 44.000 | 100 | 56 | 0 | 61 | 160 | 115 | 214 | 5.05e-18 | 82.0 |
| MS.gene63244.t1 | MTR_1g054285 | 42.609 | 115 | 62 | 1 | 52 | 166 | 137 | 247 | 6.92e-18 | 82.0 |
| MS.gene63244.t1 | MTR_2g061030 | 39.669 | 121 | 69 | 1 | 46 | 166 | 177 | 293 | 2.41e-17 | 80.9 |
| MS.gene63244.t1 | MTR_8g006705 | 46.739 | 92 | 49 | 0 | 69 | 160 | 146 | 237 | 2.96e-17 | 80.1 |
| MS.gene63244.t1 | MTR_4g126900 | 45.882 | 85 | 46 | 0 | 72 | 156 | 91 | 175 | 7.72e-17 | 77.8 |
| MS.gene63244.t1 | MTR_1g017090 | 45.455 | 88 | 48 | 0 | 69 | 156 | 130 | 217 | 1.61e-16 | 77.8 |
| MS.gene63244.t1 | MTR_4g084750 | 43.434 | 99 | 52 | 1 | 69 | 167 | 65 | 159 | 3.08e-15 | 72.8 |
| MS.gene63244.t1 | MTR_3g103590 | 48.611 | 72 | 37 | 0 | 69 | 140 | 145 | 216 | 5.65e-14 | 70.9 |
| MS.gene63244.t1 | MTR_5g013010 | 43.182 | 88 | 48 | 2 | 35 | 120 | 100 | 187 | 3.43e-12 | 64.3 |
| MS.gene63244.t1 | MTR_2g038625 | 37.615 | 109 | 64 | 2 | 51 | 155 | 60 | 168 | 1.11e-11 | 63.2 |
| MS.gene63244.t1 | MTR_2g038580 | 37.615 | 109 | 64 | 2 | 51 | 155 | 60 | 168 | 1.11e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63244.t1 | AT1G69780 | 63.889 | 288 | 82 | 8 | 1 | 274 | 15 | 294 | 5.39e-114 | 330 |
| MS.gene63244.t1 | AT1G26960 | 55.000 | 280 | 78 | 9 | 2 | 274 | 17 | 255 | 1.69e-89 | 266 |
| MS.gene63244.t1 | AT3G01220 | 48.000 | 275 | 110 | 9 | 1 | 267 | 24 | 273 | 2.28e-72 | 224 |
| MS.gene63244.t1 | AT5G15150 | 44.147 | 299 | 107 | 11 | 1 | 267 | 30 | 300 | 1.93e-69 | 217 |
| MS.gene63244.t1 | AT4G40060 | 57.576 | 132 | 52 | 2 | 51 | 178 | 39 | 170 | 3.53e-40 | 141 |
| MS.gene63244.t1 | AT5G65310 | 45.729 | 199 | 80 | 6 | 44 | 218 | 19 | 213 | 4.85e-40 | 140 |
| MS.gene63244.t1 | AT5G65310 | 48.824 | 170 | 70 | 4 | 44 | 198 | 37 | 204 | 7.41e-40 | 140 |
| MS.gene63244.t1 | AT3G01470 | 48.052 | 154 | 65 | 1 | 26 | 164 | 10 | 163 | 4.91e-39 | 137 |
| MS.gene63244.t1 | AT2G22430 | 66.667 | 99 | 33 | 0 | 66 | 164 | 59 | 157 | 6.03e-39 | 138 |
| MS.gene63244.t1 | AT1G27045 | 40.206 | 194 | 93 | 5 | 2 | 187 | 14 | 192 | 1.47e-30 | 114 |
| MS.gene63244.t1 | AT1G27045 | 42.593 | 162 | 76 | 4 | 2 | 161 | 14 | 160 | 6.79e-29 | 110 |
| MS.gene63244.t1 | AT1G27045 | 48.800 | 125 | 58 | 1 | 69 | 187 | 17 | 141 | 3.90e-28 | 106 |
| MS.gene63244.t1 | AT1G27045 | 48.800 | 125 | 58 | 1 | 69 | 187 | 25 | 149 | 4.61e-28 | 106 |
| MS.gene63244.t1 | AT1G27045 | 48.800 | 125 | 58 | 1 | 69 | 187 | 25 | 149 | 4.61e-28 | 106 |
| MS.gene63244.t1 | AT2G46680 | 52.688 | 93 | 44 | 0 | 70 | 162 | 33 | 125 | 5.37e-28 | 108 |
| MS.gene63244.t1 | AT2G46680 | 53.333 | 90 | 42 | 0 | 70 | 159 | 33 | 122 | 3.14e-27 | 106 |
| MS.gene63244.t1 | AT3G61890 | 51.111 | 90 | 44 | 0 | 72 | 161 | 33 | 122 | 1.01e-25 | 102 |
| MS.gene63244.t1 | AT5G03790 | 52.273 | 88 | 42 | 0 | 69 | 156 | 77 | 164 | 1.65e-24 | 98.6 |
| MS.gene63244.t1 | AT5G03790 | 55.000 | 80 | 36 | 0 | 69 | 148 | 77 | 156 | 1.54e-23 | 95.1 |
| MS.gene63244.t1 | AT2G36610 | 43.590 | 117 | 51 | 3 | 50 | 158 | 59 | 168 | 1.45e-22 | 92.4 |
| MS.gene63244.t1 | AT2G18550 | 46.341 | 123 | 56 | 3 | 69 | 188 | 61 | 176 | 1.93e-22 | 92.8 |
| MS.gene63244.t1 | AT4G36740 | 48.544 | 103 | 46 | 1 | 60 | 162 | 46 | 141 | 6.41e-22 | 91.3 |
| MS.gene63244.t1 | AT4G36740 | 48.544 | 103 | 46 | 1 | 60 | 162 | 47 | 142 | 6.82e-22 | 91.3 |
| MS.gene63244.t1 | AT5G66700 | 45.378 | 119 | 56 | 2 | 53 | 164 | 57 | 173 | 3.45e-21 | 89.7 |
| MS.gene63244.t1 | AT5G53980 | 44.554 | 101 | 56 | 0 | 64 | 164 | 6 | 106 | 9.47e-21 | 86.7 |
| MS.gene63244.t1 | AT2G01430 | 43.810 | 105 | 59 | 0 | 51 | 155 | 121 | 225 | 5.97e-18 | 81.6 |
| MS.gene63244.t1 | AT5G47370 | 42.708 | 96 | 55 | 0 | 61 | 156 | 122 | 217 | 2.05e-17 | 80.5 |
| MS.gene63244.t1 | AT4G37790 | 41.228 | 114 | 63 | 1 | 53 | 166 | 110 | 219 | 4.58e-17 | 79.3 |
| MS.gene63244.t1 | AT2G22800 | 46.667 | 90 | 48 | 0 | 67 | 156 | 111 | 200 | 5.80e-17 | 79.0 |
| MS.gene63244.t1 | AT5G06710 | 43.434 | 99 | 56 | 0 | 58 | 156 | 179 | 277 | 9.10e-17 | 79.3 |
| MS.gene63244.t1 | AT4G17460 | 43.000 | 100 | 55 | 1 | 56 | 155 | 124 | 221 | 1.23e-16 | 78.2 |
| MS.gene63244.t1 | AT3G60390 | 42.991 | 107 | 57 | 1 | 56 | 162 | 149 | 251 | 1.87e-16 | 78.2 |
| MS.gene63244.t1 | AT2G44910 | 44.681 | 94 | 48 | 1 | 69 | 162 | 163 | 252 | 5.12e-15 | 73.9 |
| MS.gene63244.t1 | AT1G70920 | 37.903 | 124 | 69 | 2 | 49 | 172 | 50 | 165 | 8.67e-15 | 71.6 |
| MS.gene63244.t1 | AT4G16780 | 44.681 | 94 | 48 | 1 | 69 | 162 | 129 | 218 | 9.76e-15 | 72.8 |
| MS.gene63244.t1 | AT1G70920 | 37.903 | 124 | 69 | 2 | 49 | 172 | 20 | 135 | 1.40e-14 | 70.5 |
| MS.gene63244.t1 | AT2G01430 | 50.704 | 71 | 35 | 0 | 51 | 121 | 121 | 191 | 2.70e-13 | 67.8 |
Find 47 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCTGTTTCTTTATTA+AGG | 0.139873 | 8.4:-42255350 | None:intergenic |
| CATAGATCTCTTTCCTAAAA+AGG | 0.254932 | 8.4:-42254306 | None:intergenic |
| CTGAATGTCTTGTCTTGAAT+TGG | 0.288821 | 8.4:-42255529 | None:intergenic |
| AAGACAATATGATACTATTA+AGG | 0.363112 | 8.4:+42254604 | MS.gene63244:CDS |
| AACCAAGACAGATTGCTATA+TGG | 0.383913 | 8.4:+42254519 | MS.gene63244:CDS |
| TCCGATGATGGATCGCAGTT+AGG | 0.391738 | 8.4:+42254380 | MS.gene63244:CDS |
| GTCTTGAAGAAGATGGAAAT+AGG | 0.399749 | 8.4:-42255476 | None:intergenic |
| CCGATGATGGATCGCAGTTA+GGG | 0.414857 | 8.4:+42254381 | MS.gene63244:CDS |
| AAAGATTGATCACATGGTTA+AGG | 0.429372 | 8.4:+42255557 | MS.gene63244:CDS |
| ATGCAGCTAGCAAGGGCTCT+TGG | 0.429987 | 8.4:+42254491 | MS.gene63244:CDS |
| TGGATGATCAATCTGGACTA+TGG | 0.444127 | 8.4:+42255610 | MS.gene63244:CDS |
| CCATCTTCTTCAAGACCAGC+AGG | 0.460199 | 8.4:+42255483 | MS.gene63244:CDS |
| CTTGTCTGTTGAGTAGATAA+AGG | 0.476490 | 8.4:-42255447 | None:intergenic |
| AGCTGATGAGGAACTCCTGC+TGG | 0.491266 | 8.4:-42255498 | None:intergenic |
| TGTGCCATGGATGATCAATC+TGG | 0.494499 | 8.4:+42255603 | MS.gene63244:CDS |
| CCCTAACTGCGATCCATCAT+CGG | 0.502143 | 8.4:-42254381 | None:intergenic |
| CTATATGGTTTCAAAACAGA+AGG | 0.506981 | 8.4:+42254534 | MS.gene63244:CDS |
| ATAATTGAGTTGAGTGAAGG+TGG | 0.507171 | 8.4:-42254016 | None:intergenic |
| CCTGCTGGTCTTGAAGAAGA+TGG | 0.521993 | 8.4:-42255483 | None:intergenic |
| ATCTGGACTATGGCCATGGT+TGG | 0.522424 | 8.4:+42255620 | MS.gene63244:CDS |
| AACCATATAGCAATCTGTCT+TGG | 0.526039 | 8.4:-42254521 | None:intergenic |
| AGAGGAAAATGCAGCTAGCA+AGG | 0.526858 | 8.4:+42254483 | MS.gene63244:CDS |
| TTAAGGTTGATTGATTCAGT+TGG | 0.542418 | 8.4:-42255333 | None:intergenic |
| GAGGAAGAATTATCCGATGA+TGG | 0.563562 | 8.4:+42254368 | MS.gene63244:CDS |
| GGTTTCAAAACAGAAGGGCT+AGG | 0.568856 | 8.4:+42254540 | MS.gene63244:CDS |
| TAGTCCAGATTGATCATCCA+TGG | 0.576768 | 8.4:-42255607 | None:intergenic |
| GTGTCAAAAGATTGATCACA+TGG | 0.589732 | 8.4:+42255551 | MS.gene63244:CDS |
| TTGGTTTGAAAGAGCTGATG+AGG | 0.592238 | 8.4:-42255510 | None:intergenic |
| AACCTTAATAAAGAAACAGA+AGG | 0.601474 | 8.4:+42255348 | MS.gene63244:CDS |
| GTTATAATTGAGTTGAGTGA+AGG | 0.601931 | 8.4:-42254019 | None:intergenic |
| GAAGAAGAGAAGGCTTAACA+TGG | 0.612268 | 8.4:+42254406 | MS.gene63244:CDS |
| ATCAATCTGGACTATGGCCA+TGG | 0.615676 | 8.4:+42255616 | MS.gene63244:CDS |
| AGTTAGGGGAGAAGAAGAGA+AGG | 0.616244 | 8.4:+42254396 | MS.gene63244:CDS |
| ATTGAGTTGAGTGAAGGTGG+AGG | 0.620969 | 8.4:-42254013 | None:intergenic |
| AAACAGTTCAGATATCAAGC+TGG | 0.622724 | 8.4:+42255392 | MS.gene63244:CDS |
| TAGGTGGAAGACAAAACAGT+TGG | 0.622940 | 8.4:+42254559 | MS.gene63244:CDS |
| TATATGGTTTCAAAACAGAA+GGG | 0.626685 | 8.4:+42254535 | MS.gene63244:CDS |
| GAGGAAAATGCAGCTAGCAA+GGG | 0.631443 | 8.4:+42254484 | MS.gene63244:CDS |
| AAGTGCTGTTGCTCCAACCA+TGG | 0.633621 | 8.4:-42255633 | None:intergenic |
| GTAATCTTGAGGTGCACATG+AGG | 0.639812 | 8.4:-42254041 | None:intergenic |
| CGATGATGGATCGCAGTTAG+GGG | 0.649440 | 8.4:+42254382 | MS.gene63244:CDS |
| GAAACAAGCTTGAACCTGAG+AGG | 0.652955 | 8.4:+42254465 | MS.gene63244:CDS |
| AAAGTACCATGGTAATCTTG+AGG | 0.656226 | 8.4:-42254052 | None:intergenic |
| TGGAGAAGAAGCTAATGTCG+AGG | 0.659865 | 8.4:+42254349 | MS.gene63244:CDS |
| TTCAAAACAGAAGGGCTAGG+TGG | 0.663747 | 8.4:+42254543 | MS.gene63244:CDS |
| TGTGCACCTCAAGATTACCA+TGG | 0.714676 | 8.4:+42254046 | MS.gene63244:CDS |
| TCAAGCTGGATATTTCAACA+AGG | 0.727961 | 8.4:+42255406 | MS.gene63244:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCTTTTTATATTCAAA+AGG | - | chr8.4:42255022-42255041 | None:intergenic | 10.0% |
| !! | TTATAAAAGTTATCATTAGT+TGG | - | chr8.4:42255087-42255106 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGCTTTTTACTTA+TGG | + | chr8.4:42255240-42255259 | MS.gene63244:intron | 15.0% |
| !!! | TTAATTTTTTTACCAAAATG+AGG | - | chr8.4:42255179-42255198 | None:intergenic | 15.0% |
| !! | AAATTGATGAAAGGAAATAA+AGG | - | chr8.4:42255062-42255081 | None:intergenic | 20.0% |
| !! | AAGACAATATGATACTATTA+AGG | + | chr8.4:42254604-42254623 | MS.gene63244:CDS | 20.0% |
| !! | CATTGAAAATTAGTAACATT+TGG | - | chr8.4:42255279-42255298 | None:intergenic | 20.0% |
| !! | GACACATAAATTAACAAATA+TGG | - | chr8.4:42254846-42254865 | None:intergenic | 20.0% |
| !!! | AACTTTTTATTCTTTACTCA+TGG | + | chr8.4:42254685-42254704 | MS.gene63244:intron | 20.0% |
| !!! | CATTTGCTAGATTTAAATAA+AGG | - | chr8.4:42254213-42254232 | None:intergenic | 20.0% |
| ! | AACCTTAATAAAGAAACAGA+AGG | + | chr8.4:42255348-42255367 | MS.gene63244:CDS | 25.0% |
| ! | CATTAAAACCTATTATGTCA+TGG | + | chr8.4:42254168-42254187 | MS.gene63244:intron | 25.0% |
| ! | TATATGGTTTCAAAACAGAA+GGG | + | chr8.4:42254535-42254554 | MS.gene63244:CDS | 25.0% |
| !! | AAGAGATGTTCAAGTATTTT+GGG | + | chr8.4:42254902-42254921 | MS.gene63244:intron | 25.0% |
| !! | ATCCTTCTGTTTCTTTATTA+AGG | - | chr8.4:42255353-42255372 | None:intergenic | 25.0% |
| !!! | CTTTTAGAACAACATTAGAT+TGG | - | chr8.4:42254774-42254793 | None:intergenic | 25.0% |
| !!! | GTAAAAAGCTTTTTTTTGCT+TGG | - | chr8.4:42255237-42255256 | None:intergenic | 25.0% |
| AAAGAAAACATGTCATTGAG+TGG | - | chr8.4:42255146-42255165 | None:intergenic | 30.0% | |
| AAAGATTGATCACATGGTTA+AGG | + | chr8.4:42255557-42255576 | MS.gene63244:CDS | 30.0% | |
| CATAGATCTCTTTCCTAAAA+AGG | - | chr8.4:42254309-42254328 | None:intergenic | 30.0% | |
| CTATATGGTTTCAAAACAGA+AGG | + | chr8.4:42254534-42254553 | MS.gene63244:CDS | 30.0% | |
| GAAAGTAACTGTGTAATGAT+AGG | - | chr8.4:42255124-42255143 | None:intergenic | 30.0% | |
| ! | ATGACATGTTTTCTTTTGCA+TGG | + | chr8.4:42255150-42255169 | MS.gene63244:intron | 30.0% |
| ! | CAAGAGATGTTCAAGTATTT+TGG | + | chr8.4:42254901-42254920 | MS.gene63244:intron | 30.0% |
| ! | TTAAGGTTGATTGATTCAGT+TGG | - | chr8.4:42255336-42255355 | None:intergenic | 30.0% |
| !! | CATGTTTTAAATGTTGTTGC+AGG | + | chr8.4:42254272-42254291 | MS.gene63244:intron | 30.0% |
| !! | GTTATAATTGAGTTGAGTGA+AGG | - | chr8.4:42254022-42254041 | None:intergenic | 30.0% |
| !! | TAGTTGGTGAAATTGATGAA+AGG | - | chr8.4:42255071-42255090 | None:intergenic | 30.0% |
| !!! | AAGAGATCTATGTCATTTTC+AGG | + | chr8.4:42254317-42254336 | MS.gene63244:CDS | 30.0% |
| !!! | AGAGATCTATGTCATTTTCA+GGG | + | chr8.4:42254318-42254337 | MS.gene63244:CDS | 30.0% |
| AAACAGTTCAGATATCAAGC+TGG | + | chr8.4:42255392-42255411 | MS.gene63244:CDS | 35.0% | |
| AACCAAGACAGATTGCTATA+TGG | + | chr8.4:42254519-42254538 | MS.gene63244:CDS | 35.0% | |
| AACCATATAGCAATCTGTCT+TGG | - | chr8.4:42254524-42254543 | None:intergenic | 35.0% | |
| CTGAATGTCTTGTCTTGAAT+TGG | - | chr8.4:42255532-42255551 | None:intergenic | 35.0% | |
| CTTGTCTGTTGAGTAGATAA+AGG | - | chr8.4:42255450-42255469 | None:intergenic | 35.0% | |
| GAATCAAAAACTTCAGACTG+AGG | + | chr8.4:42254652-42254671 | MS.gene63244:CDS | 35.0% | |
| GTCTTGAAGAAGATGGAAAT+AGG | - | chr8.4:42255479-42255498 | None:intergenic | 35.0% | |
| GTGTCAAAAGATTGATCACA+TGG | + | chr8.4:42255551-42255570 | MS.gene63244:CDS | 35.0% | |
| TCAAGCTGGATATTTCAACA+AGG | + | chr8.4:42255406-42255425 | MS.gene63244:CDS | 35.0% | |
| ! | AAAGTACCATGGTAATCTTG+AGG | - | chr8.4:42254055-42254074 | None:intergenic | 35.0% |
| ! | TCAATGCTTGTTGCAGATAT+TGG | + | chr8.4:42255293-42255312 | MS.gene63244:intron | 35.0% |
| ! | TTTGCATGGTTTCCTCATTT+TGG | + | chr8.4:42255164-42255183 | MS.gene63244:intron | 35.0% |
| !! | ATAATTGAGTTGAGTGAAGG+TGG | - | chr8.4:42254019-42254038 | None:intergenic | 35.0% |
| !! | GTTTTAAATGTTGTTGCAGG+AGG | + | chr8.4:42254275-42254294 | MS.gene63244:intron | 35.0% |
| !! | TCATTTTCAGGGATAGAACT+TGG | + | chr8.4:42254329-42254348 | MS.gene63244:CDS | 35.0% |
| !! | TCTAGAGAAAGAAAGTACCA+TGG | - | chr8.4:42254066-42254085 | None:intergenic | 35.0% |
| !!! | CTTGAGAAGAGTTTTGAGTT+AGG | + | chr8.4:42254443-42254462 | MS.gene63244:CDS | 35.0% |
| GAAGAAGAGAAGGCTTAACA+TGG | + | chr8.4:42254406-42254425 | MS.gene63244:CDS | 40.0% | |
| GAGGAAGAATTATCCGATGA+TGG | + | chr8.4:42254368-42254387 | MS.gene63244:CDS | 40.0% | |
| TAGGTGGAAGACAAAACAGT+TGG | + | chr8.4:42254559-42254578 | MS.gene63244:CDS | 40.0% | |
| TAGTCCAGATTGATCATCCA+TGG | - | chr8.4:42255610-42255629 | None:intergenic | 40.0% | |
| TGGATGATCAATCTGGACTA+TGG | + | chr8.4:42255610-42255629 | MS.gene63244:CDS | 40.0% | |
| TTAAATGTTGTTGCAGGAGG+AGG | + | chr8.4:42254278-42254297 | MS.gene63244:intron | 40.0% | |
| ! | GAGTAACATGTTTTGTGCCA+TGG | + | chr8.4:42255590-42255609 | MS.gene63244:CDS | 40.0% |
| ! | TTGGTTTGAAAGAGCTGATG+AGG | - | chr8.4:42255513-42255532 | None:intergenic | 40.0% |
| AACTGCAACTGAGGCTACAT+CGG | - | chr8.4:42254130-42254149 | None:intergenic | 45.0% | |
| AGAGGAAAATGCAGCTAGCA+AGG | + | chr8.4:42254483-42254502 | MS.gene63244:CDS | 45.0% | |
| AGTTAGGGGAGAAGAAGAGA+AGG | + | chr8.4:42254396-42254415 | MS.gene63244:CDS | 45.0% | |
| ATCAATCTGGACTATGGCCA+TGG | + | chr8.4:42255616-42255635 | MS.gene63244:CDS | 45.0% | |
| CGACAAGAGCTGAATTTCAG+TGG | + | chr8.4:42254737-42254756 | MS.gene63244:intron | 45.0% | |
| GAAACAAGCTTGAACCTGAG+AGG | + | chr8.4:42254465-42254484 | MS.gene63244:CDS | 45.0% | |
| GAGGAAAATGCAGCTAGCAA+GGG | + | chr8.4:42254484-42254503 | MS.gene63244:CDS | 45.0% | |
| GATCTGGGCCATGACATAAT+AGG | - | chr8.4:42254179-42254198 | None:intergenic | 45.0% | |
| GGTTTCAAAACAGAAGGGCT+AGG | + | chr8.4:42254540-42254559 | MS.gene63244:CDS | 45.0% | |
| GTAATCTTGAGGTGCACATG+AGG | - | chr8.4:42254044-42254063 | None:intergenic | 45.0% | |
| TGGAGAAGAAGCTAATGTCG+AGG | + | chr8.4:42254349-42254368 | MS.gene63244:CDS | 45.0% | |
| TGTGCACCTCAAGATTACCA+TGG | + | chr8.4:42254046-42254065 | MS.gene63244:CDS | 45.0% | |
| TGTGCCATGGATGATCAATC+TGG | + | chr8.4:42255603-42255622 | MS.gene63244:CDS | 45.0% | |
| TTCAAAACAGAAGGGCTAGG+TGG | + | chr8.4:42254543-42254562 | MS.gene63244:CDS | 45.0% | |
| !! | ATTGAGTTGAGTGAAGGTGG+AGG | - | chr8.4:42254016-42254035 | None:intergenic | 45.0% |
| !!! | GGAGGAGGAGTATCCTTTTT+AGG | + | chr8.4:42254293-42254312 | MS.gene63244:intron | 45.0% |
| !!! | AAATGTAATATTATTTTTTA+TGG | + | chr8.4:42254228-42254247 | MS.gene63244:intron | 5.0% |
| !!! | AATGTAATATTATTTTTTAT+GGG | + | chr8.4:42254229-42254248 | MS.gene63244:intron | 5.0% |
| ATCTGGACTATGGCCATGGT+TGG | + | chr8.4:42255620-42255639 | MS.gene63244:CDS | 50.0% | |
| CCATCTTCTTCAAGACCAGC+AGG | + | chr8.4:42255483-42255502 | MS.gene63244:CDS | 50.0% | |
| CCCTAACTGCGATCCATCAT+CGG | - | chr8.4:42254384-42254403 | None:intergenic | 50.0% | |
| TGACAACGCAACTGCAACTG+AGG | - | chr8.4:42254139-42254158 | None:intergenic | 50.0% | |
| TTATGTCATGGCCCAGATCG+CGG | + | chr8.4:42254180-42254199 | MS.gene63244:intron | 50.0% | |
| ! | AAGTGCTGTTGCTCCAACCA+TGG | - | chr8.4:42255636-42255655 | None:intergenic | 50.0% |
| ! | GCTAGCTGCATTTTCCTCTC+AGG | - | chr8.4:42254482-42254501 | None:intergenic | 50.0% |
| !! | CCGATGATGGATCGCAGTTA+GGG | + | chr8.4:42254381-42254400 | MS.gene63244:CDS | 50.0% |
| !! | CCTGCTGGTCTTGAAGAAGA+TGG | - | chr8.4:42255486-42255505 | None:intergenic | 50.0% |
| !! | CGATGATGGATCGCAGTTAG+GGG | + | chr8.4:42254382-42254401 | MS.gene63244:CDS | 50.0% |
| !! | TCCGATGATGGATCGCAGTT+AGG | + | chr8.4:42254380-42254399 | MS.gene63244:CDS | 50.0% |
| AAGGTATGCGACCGCGATCT+GGG | - | chr8.4:42254194-42254213 | None:intergenic | 55.0% | |
| AGCTGATGAGGAACTCCTGC+TGG | - | chr8.4:42255501-42255520 | None:intergenic | 55.0% | |
| ATGCAGCTAGCAAGGGCTCT+TGG | + | chr8.4:42254491-42254510 | MS.gene63244:CDS | 55.0% | |
| ! | AAAGGTATGCGACCGCGATC+TGG | - | chr8.4:42254195-42254214 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 42253977 | 42255662 | 42253977 | ID=MS.gene63244 |
| chr8.4 | mRNA | 42253977 | 42255662 | 42253977 | ID=MS.gene63244.t1;Parent=MS.gene63244 |
| chr8.4 | exon | 42253977 | 42254067 | 42253977 | ID=MS.gene63244.t1.exon1;Parent=MS.gene63244.t1 |
| chr8.4 | CDS | 42253977 | 42254067 | 42253977 | ID=cds.MS.gene63244.t1;Parent=MS.gene63244.t1 |
| chr8.4 | exon | 42254294 | 42254673 | 42254294 | ID=MS.gene63244.t1.exon2;Parent=MS.gene63244.t1 |
| chr8.4 | CDS | 42254294 | 42254673 | 42254294 | ID=cds.MS.gene63244.t1;Parent=MS.gene63244.t1 |
| chr8.4 | exon | 42255309 | 42255662 | 42255309 | ID=MS.gene63244.t1.exon3;Parent=MS.gene63244.t1 |
| chr8.4 | CDS | 42255309 | 42255662 | 42255309 | ID=cds.MS.gene63244.t1;Parent=MS.gene63244.t1 |
| Gene Sequence |
| Protein sequence |
