Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63304.t1 | XP_013460710.1 | 96.9 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 1.20E-289 | 1005 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63304.t1 | A0A072UY59 | 96.9 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 8.8e-290 | 1005.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055519 | MS.gene63304 | 0.823565 | 1.29E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63304.t1 | MTR_3g068125 | 96.933 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 0.0 | 1000 |
| MS.gene63304.t1 | MTR_7g063090 | 49.016 | 508 | 239 | 9 | 1 | 488 | 1 | 508 | 1.03e-169 | 488 |
| MS.gene63304.t1 | MTR_8g028765 | 48.434 | 415 | 205 | 5 | 82 | 489 | 77 | 489 | 3.19e-139 | 410 |
| MS.gene63304.t1 | MTR_7g078320 | 47.596 | 416 | 207 | 7 | 82 | 489 | 77 | 489 | 5.96e-127 | 378 |
| MS.gene63304.t1 | MTR_5g010070 | 46.959 | 411 | 208 | 6 | 82 | 485 | 82 | 489 | 1.34e-126 | 377 |
| MS.gene63304.t1 | MTR_8g098835 | 46.359 | 412 | 210 | 7 | 82 | 485 | 105 | 513 | 2.03e-125 | 375 |
| MS.gene63304.t1 | MTR_4g046680 | 44.068 | 413 | 217 | 7 | 82 | 489 | 74 | 477 | 8.49e-121 | 362 |
| MS.gene63304.t1 | MTR_2g095970 | 44.712 | 416 | 218 | 7 | 82 | 489 | 132 | 543 | 1.32e-118 | 359 |
| MS.gene63304.t1 | MTR_4g061590 | 45.278 | 413 | 215 | 7 | 82 | 485 | 107 | 517 | 1.77e-118 | 358 |
| MS.gene63304.t1 | MTR_2g088940 | 44.391 | 419 | 215 | 7 | 81 | 487 | 56 | 468 | 6.83e-112 | 339 |
| MS.gene63304.t1 | MTR_2g088940 | 44.153 | 419 | 218 | 7 | 81 | 487 | 56 | 470 | 2.16e-111 | 338 |
| MS.gene63304.t1 | MTR_4g046677 | 41.667 | 420 | 236 | 5 | 75 | 487 | 56 | 473 | 4.35e-109 | 332 |
| MS.gene63304.t1 | MTR_5g008060 | 43.077 | 390 | 210 | 4 | 83 | 461 | 126 | 514 | 1.72e-104 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63304.t1 | AT3G11420 | 52.610 | 498 | 211 | 7 | 10 | 487 | 13 | 505 | 0.0 | 521 |
| MS.gene63304.t1 | AT2G37730 | 52.278 | 417 | 189 | 5 | 82 | 488 | 96 | 512 | 1.32e-164 | 476 |
| MS.gene63304.t1 | AT5G41460 | 43.885 | 417 | 222 | 6 | 82 | 489 | 110 | 523 | 2.69e-123 | 370 |
| MS.gene63304.t1 | AT4G23490 | 44.762 | 420 | 217 | 8 | 82 | 489 | 109 | 525 | 5.84e-123 | 369 |
| MS.gene63304.t1 | AT4G15240 | 45.012 | 431 | 218 | 9 | 70 | 489 | 64 | 486 | 3.51e-118 | 356 |
| MS.gene63304.t1 | AT4G11350 | 41.270 | 441 | 243 | 8 | 63 | 489 | 68 | 506 | 1.62e-116 | 352 |
| MS.gene63304.t1 | AT1G33250 | 43.350 | 406 | 218 | 4 | 67 | 461 | 114 | 518 | 1.82e-116 | 353 |
| MS.gene63304.t1 | AT1G01570 | 44.076 | 422 | 215 | 11 | 82 | 485 | 53 | 471 | 7.84e-115 | 347 |
| MS.gene63304.t1 | AT1G01570 | 44.076 | 422 | 215 | 11 | 82 | 485 | 84 | 502 | 2.61e-114 | 347 |
| MS.gene63304.t1 | AT1G05280 | 42.553 | 423 | 229 | 7 | 81 | 489 | 67 | 489 | 7.27e-112 | 340 |
| MS.gene63304.t1 | AT1G07850 | 46.814 | 408 | 206 | 7 | 82 | 481 | 123 | 527 | 8.43e-112 | 341 |
| MS.gene63304.t1 | AT1G05280 | 43.603 | 383 | 203 | 6 | 81 | 450 | 67 | 449 | 1.81e-103 | 317 |
| MS.gene63304.t1 | AT4G00295 | 48.512 | 336 | 161 | 6 | 82 | 405 | 78 | 413 | 2.02e-100 | 310 |
| MS.gene63304.t1 | AT5G12460 | 35.817 | 416 | 248 | 7 | 81 | 487 | 35 | 440 | 1.97e-91 | 285 |
| MS.gene63304.t1 | AT4G11350 | 48.230 | 226 | 107 | 4 | 63 | 278 | 68 | 293 | 6.74e-63 | 207 |
Find 111 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGATACTATTATTATTA+TGG | 0.181752 | 3.3:+60372623 | MS.gene63304:CDS |
| TAGGCAATGCTGCAACTTTA+TGG | 0.202911 | 3.3:+60373756 | MS.gene63304:CDS |
| AGTACATTCTTCCAATATTC+TGG | 0.221242 | 3.3:-60373326 | None:intergenic |
| TCAATTGCACCCGGTGTTTC+CGG | 0.229748 | 3.3:+60372890 | MS.gene63304:CDS |
| CATTCTTATGATATGGCTTT+TGG | 0.252514 | 3.3:+60372533 | MS.gene63304:CDS |
| TGTTATGCATTCTTATGATA+TGG | 0.258668 | 3.3:+60372526 | MS.gene63304:CDS |
| CTTGTCAACATGTCTCTTAT+AGG | 0.267306 | 3.3:-60373234 | None:intergenic |
| GATGGTCAATATCTATTTCT+TGG | 0.284894 | 3.3:+60373012 | MS.gene63304:CDS |
| TGGGCCTGTGTAAACGAATT+AGG | 0.288879 | 3.3:+60372662 | MS.gene63304:CDS |
| CTTTGCTGCACTATCCTTGC+AGG | 0.301406 | 3.3:-60372966 | None:intergenic |
| ATGGTTCTGATCAAAGAGTT+TGG | 0.320612 | 3.3:+60372642 | MS.gene63304:CDS |
| TTCTTTCAGCTTGACATTAG+AGG | 0.320745 | 3.3:+60372804 | MS.gene63304:intron |
| AGACCGATGGTTTCCATTAC+CGG | 0.321789 | 3.3:+60372055 | MS.gene63304:CDS |
| ATGGTCAATATCTATTTCTT+GGG | 0.336226 | 3.3:+60373013 | MS.gene63304:CDS |
| AAAGCGTTTGTTACGATCAT+AGG | 0.351519 | 3.3:+60372985 | MS.gene63304:CDS |
| AGCTAGACTAGCCAATATTA+TGG | 0.361476 | 3.3:+60372589 | MS.gene63304:CDS |
| AAGACAAGAATCCATAATAT+TGG | 0.372930 | 3.3:-60372600 | None:intergenic |
| TGGTTCTGATCAAAGAGTTT+GGG | 0.381224 | 3.3:+60372643 | MS.gene63304:CDS |
| TCGTCCGGCTTCAAATTCTT+TGG | 0.392591 | 3.3:-60372257 | None:intergenic |
| TGAAGCTGGATCCAGAATAT+TGG | 0.394541 | 3.3:+60373315 | MS.gene63304:CDS |
| GAAGTGTGCATATCAGAATA+AGG | 0.398327 | 3.3:+60373800 | MS.gene63304:CDS |
| ATTACAAACCACCTAACATT+TGG | 0.398470 | 3.3:-60372392 | None:intergenic |
| AATGTTAGGTGGTTTGTAAT+GGG | 0.399701 | 3.3:+60372395 | MS.gene63304:CDS |
| AACATCTCACATATTGTATT+CGG | 0.400973 | 3.3:+60372134 | MS.gene63304:CDS |
| ACAATATGTGAGATGTTTGT+AGG | 0.401191 | 3.3:-60372128 | None:intergenic |
| GACTTGGTTTGCCAAATGTT+AGG | 0.401562 | 3.3:+60372381 | MS.gene63304:CDS |
| ACATGTAAATGCTCCGGTAA+TGG | 0.419091 | 3.3:-60372068 | None:intergenic |
| TAAAGTTTCTGCCTTGAAGC+TGG | 0.424979 | 3.3:+60373301 | MS.gene63304:CDS |
| GAGAATTTAGTTACTGTGTT+GGG | 0.433829 | 3.3:+60372443 | MS.gene63304:CDS |
| CAACACAGTAACTAAATTCT+CGG | 0.435773 | 3.3:-60372441 | None:intergenic |
| GATGGCTGCTGGCATACGTC+AGG | 0.438417 | 3.3:-60373161 | None:intergenic |
| CTGGTTTAGCGAATGTTGAA+TGG | 0.440363 | 3.3:-60372034 | None:intergenic |
| CAAGTGATATCGATGCTATA+AGG | 0.444451 | 3.3:-60372007 | None:intergenic |
| AACACAGTAACTAAATTCTC+GGG | 0.445312 | 3.3:-60372440 | None:intergenic |
| CAGGTTAGCAAGGCGAGGAC+TGG | 0.447016 | 3.3:+60373200 | MS.gene63304:CDS |
| GTTTGTAGGTATTGTATCAA+TGG | 0.455882 | 3.3:-60372114 | None:intergenic |
| GAAGACATTTGACTTTGGTC+CGG | 0.464283 | 3.3:-60372909 | None:intergenic |
| TATGGATGGAGGAAGCATAA+AGG | 0.473984 | 3.3:+60373774 | MS.gene63304:CDS |
| TGCACTCTGCATCTGCAGTT+CGG | 0.475113 | 3.3:+60372330 | MS.gene63304:CDS |
| TCTTTCAGCTTGACATTAGA+GGG | 0.478025 | 3.3:+60372805 | MS.gene63304:intron |
| CTGATGGAATCCTCTTTCTC+TGG | 0.479756 | 3.3:-60372696 | None:intergenic |
| AAATGTTAGGTGGTTTGTAA+TGG | 0.483649 | 3.3:+60372394 | MS.gene63304:CDS |
| CATATTGTATTCGGCATCGC+TGG | 0.484108 | 3.3:+60372143 | MS.gene63304:CDS |
| ATATTCTGGATCCAGCTTCA+AGG | 0.484846 | 3.3:-60373312 | None:intergenic |
| GTTACGATCATAGGCGAAGA+TGG | 0.485744 | 3.3:+60372994 | MS.gene63304:CDS |
| TGCGCGGCTAAAAGACCATA+TGG | 0.489054 | 3.3:-60372831 | None:intergenic |
| GTAGCAACTACAGCAAGCTT+TGG | 0.489072 | 3.3:+60372189 | MS.gene63304:CDS |
| ATCAATTGTATTATGTTGGT+GGG | 0.494583 | 3.3:+60372480 | MS.gene63304:CDS |
| TTAATGAAGACATTTGACTT+TGG | 0.494866 | 3.3:-60372914 | None:intergenic |
| CACAGGGATGGACTAAGTTC+AGG | 0.495648 | 3.3:+60372303 | MS.gene63304:CDS |
| AATCAATTGTATTATGTTGG+TGG | 0.497202 | 3.3:+60372479 | MS.gene63304:CDS |
| CGAGAATTTAGTTACTGTGT+TGG | 0.501043 | 3.3:+60372442 | MS.gene63304:CDS |
| AAGAAGTGCAAGAGAGCAGA+TGG | 0.501500 | 3.3:+60373263 | MS.gene63304:CDS |
| GCAACTACAGCAAGCTTTGG+TGG | 0.504940 | 3.3:+60372192 | MS.gene63304:CDS |
| GTATCTCTTACCAGAGAAAG+AGG | 0.506069 | 3.3:+60372686 | MS.gene63304:CDS |
| TCGCCTTGCTAACCTGATCC+AGG | 0.517031 | 3.3:-60373193 | None:intergenic |
| CTATACATCATTGTTGATAA+CGG | 0.518253 | 3.3:+60373052 | MS.gene63304:CDS |
| CTTTCACGTTTAATACTCGA+TGG | 0.519089 | 3.3:+60373132 | MS.gene63304:CDS |
| GTTTCATTCTCAATAAGAGT+TGG | 0.520650 | 3.3:+60371972 | MS.gene63304:CDS |
| GACATTAGAGGGAATCCATA+TGG | 0.523887 | 3.3:+60372816 | MS.gene63304:CDS |
| TGTATAACATGTAAATGCTC+CGG | 0.525305 | 3.3:-60372074 | None:intergenic |
| CACAATCAATTGTATTATGT+TGG | 0.531738 | 3.3:+60372476 | MS.gene63304:CDS |
| GACTTTGGTCCGGAAACACC+GGG | 0.532438 | 3.3:-60372899 | None:intergenic |
| GCACTATCCTTGCAGGGTCA+AGG | 0.533225 | 3.3:-60372959 | None:intergenic |
| TGACTTTGGTCCGGAAACAC+CGG | 0.538833 | 3.3:-60372900 | None:intergenic |
| TATGGAATTAGCATATCGTC+CGG | 0.541449 | 3.3:-60372272 | None:intergenic |
| GGTAATGGAAACCATCGGTC+TGG | 0.541977 | 3.3:-60372053 | None:intergenic |
| CATTGCAGACGTTTAAAACA+TGG | 0.544137 | 3.3:+60373090 | MS.gene63304:CDS |
| CAATGCTGCAACTTTATGGA+TGG | 0.549920 | 3.3:+60373760 | MS.gene63304:CDS |
| CAGAGAAAGAGGATTCCATC+AGG | 0.551061 | 3.3:+60372697 | MS.gene63304:CDS |
| GATGGAGGAAGCATAAAGGA+TGG | 0.551195 | 3.3:+60373778 | MS.gene63304:CDS |
| ACACCGGGTGCAATTGATCA+AGG | 0.552142 | 3.3:-60372884 | None:intergenic |
| AAGAGACATGTTGACAAGGA+AGG | 0.554279 | 3.3:+60373239 | MS.gene63304:CDS |
| ACAAAACCTCTGCAAGCAGT+TGG | 0.555849 | 3.3:-60372218 | None:intergenic |
| TAAATAGTAATTGTTTCTTG+AGG | 0.556987 | 3.3:-60373832 | None:intergenic |
| GTGACACAAGCGGTGCCAGA+GGG | 0.558684 | 3.3:-60372854 | None:intergenic |
| AATTCCATATAAAATCTCAC+AGG | 0.565071 | 3.3:+60372286 | MS.gene63304:CDS |
| AAAGATGAATCAAGACCGGA+TGG | 0.570780 | 3.3:+60371884 | None:intergenic |
| GATCATGACAAGATTCCATC+CGG | 0.571059 | 3.3:-60371899 | None:intergenic |
| CATATAAAATCTCACAGGGA+TGG | 0.576471 | 3.3:+60372291 | MS.gene63304:CDS |
| TTTCCTGGATCAGGTTAGCA+AGG | 0.577526 | 3.3:+60373190 | MS.gene63304:CDS |
| AAGCGGTGCCAGAGGGTGCG+CGG | 0.577646 | 3.3:-60372847 | None:intergenic |
| GGTGCAATTGATCAAGGTGA+TGG | 0.580356 | 3.3:-60372878 | None:intergenic |
| AAAGCTTGCTGTAGTTGCTA+CGG | 0.585308 | 3.3:-60372187 | None:intergenic |
| GTTTACGAAAGCTTTAGACT+TGG | 0.588389 | 3.3:+60372365 | MS.gene63304:CDS |
| CATCGAGTATTAAACGTGAA+AGG | 0.595299 | 3.3:-60373131 | None:intergenic |
| TGCTGCAACTTTATGGATGG+AGG | 0.596653 | 3.3:+60373763 | MS.gene63304:CDS |
| TTGGTTTGCCAAATGTTAGG+TGG | 0.598605 | 3.3:+60372384 | MS.gene63304:CDS |
| TACTCCTAATTCGTTTACAC+AGG | 0.598658 | 3.3:-60372666 | None:intergenic |
| TTTGCTGCACTATCCTTGCA+GGG | 0.605237 | 3.3:-60372965 | None:intergenic |
| TGGAATCCAACTGCTTGCAG+AGG | 0.608124 | 3.3:+60372212 | MS.gene63304:CDS |
| GAAACCAAAGAATTTGAAGC+CGG | 0.608342 | 3.3:+60372253 | MS.gene63304:CDS |
| ACATGGCGAAGTTCGAGTGA+TGG | 0.608871 | 3.3:+60373107 | MS.gene63304:CDS |
| TGGTCAATATCTATTTCTTG+GGG | 0.611066 | 3.3:+60373014 | MS.gene63304:CDS |
| ATGGCTGCTGGCATACGTCA+GGG | 0.616574 | 3.3:-60373160 | None:intergenic |
| CATACGACCTTGACCCTGCA+AGG | 0.619078 | 3.3:+60372952 | MS.gene63304:CDS |
| TCGCTGGTTCATCGAAAATG+TGG | 0.619094 | 3.3:+60372159 | MS.gene63304:CDS |
| AGTGACACAAGCGGTGCCAG+AGG | 0.619459 | 3.3:-60372855 | None:intergenic |
| TACATCATTGTTGATAACGG+CGG | 0.640214 | 3.3:+60373055 | MS.gene63304:CDS |
| CTATAAGAGACATGTTGACA+AGG | 0.643214 | 3.3:+60373235 | MS.gene63304:CDS |
| TGGATCAGGTTAGCAAGGCG+AGG | 0.644993 | 3.3:+60373195 | MS.gene63304:CDS |
| TGTAATGGGAGATGATGATA+CGG | 0.647634 | 3.3:+60372409 | MS.gene63304:CDS |
| TCACCTTGATCAATTGCACC+CGG | 0.648699 | 3.3:+60372881 | MS.gene63304:CDS |
| TGGTGGGAATTCTGAGAGTG+TGG | 0.651969 | 3.3:+60372496 | MS.gene63304:CDS |
| AAGTTGCAGCATTGCCTACG+TGG | 0.657008 | 3.3:-60373751 | None:intergenic |
| CATTCGCTAAACCAGACCGA+TGG | 0.664525 | 3.3:+60372042 | MS.gene63304:CDS |
| GCTCCGGTAATGGAAACCAT+CGG | 0.666665 | 3.3:-60372058 | None:intergenic |
| AGGTGATGGAGTGACACAAG+CGG | 0.678083 | 3.3:-60372864 | None:intergenic |
| CATCTGCAGTTCGGATATCG+CGG | 0.678366 | 3.3:+60372339 | MS.gene63304:CDS |
| ATTCCATATAAAATCTCACA+GGG | 0.693816 | 3.3:+60372287 | MS.gene63304:CDS |
| ACACAGTAACTAAATTCTCG+GGG | 0.699271 | 3.3:-60372439 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAGATACTATTATTATTA+TGG | + | chr3.3:60372623-60372642 | MS.gene63304:CDS | 15.0% |
| !! | TTCTTTATTCTATATTCTAT+GGG | + | chr3.3:60372757-60372776 | MS.gene63304:intron | 15.0% |
| !! | TTTCTTTATTCTATATTCTA+TGG | + | chr3.3:60372756-60372775 | MS.gene63304:intron | 15.0% |
| !!! | GATGTTTTGTTTTTATTTTG+TGG | - | chr3.3:60373605-60373624 | None:intergenic | 20.0% |
| !!! | TAAATAGTAATTGTTTCTTG+AGG | - | chr3.3:60373835-60373854 | None:intergenic | 20.0% |
| ! | AACATCTCACATATTGTATT+CGG | + | chr3.3:60372134-60372153 | MS.gene63304:CDS | 25.0% |
| ! | AAGACAAGAATCCATAATAT+TGG | - | chr3.3:60372603-60372622 | None:intergenic | 25.0% |
| ! | AATCAATTGTATTATGTTGG+TGG | + | chr3.3:60372479-60372498 | MS.gene63304:CDS | 25.0% |
| ! | AATTCCATATAAAATCTCAC+AGG | + | chr3.3:60372286-60372305 | MS.gene63304:CDS | 25.0% |
| ! | ACTTAAACTCAAAATGCTAT+AGG | - | chr3.3:60373685-60373704 | None:intergenic | 25.0% |
| ! | ACTTAATTCAGTTTATCTAC+TGG | - | chr3.3:60373570-60373589 | None:intergenic | 25.0% |
| ! | ATCAATTGTATTATGTTGGT+GGG | + | chr3.3:60372480-60372499 | MS.gene63304:CDS | 25.0% |
| ! | ATTCCATATAAAATCTCACA+GGG | + | chr3.3:60372287-60372306 | MS.gene63304:CDS | 25.0% |
| ! | CACAATCAATTGTATTATGT+TGG | + | chr3.3:60372476-60372495 | MS.gene63304:CDS | 25.0% |
| ! | CCTTATATACCAGAAAAAAT+AGG | + | chr3.3:60371942-60371961 | MS.gene63304:CDS | 25.0% |
| ! | TGTTATGCATTCTTATGATA+TGG | + | chr3.3:60372526-60372545 | MS.gene63304:CDS | 25.0% |
| !! | ATGGGAAATTTACTGTTTTA+TGG | + | chr3.3:60372775-60372794 | MS.gene63304:intron | 25.0% |
| !! | ATGGTCAATATCTATTTCTT+GGG | + | chr3.3:60373013-60373032 | MS.gene63304:CDS | 25.0% |
| !! | CTATACATCATTGTTGATAA+CGG | + | chr3.3:60373052-60373071 | MS.gene63304:CDS | 25.0% |
| !! | TTAATGAAGACATTTGACTT+TGG | - | chr3.3:60372917-60372936 | None:intergenic | 25.0% |
| !!! | CCTATTTTTTCTGGTATATA+AGG | - | chr3.3:60371945-60371964 | None:intergenic | 25.0% |
| !!! | TGATTTGACTGTTTTAAATC+AGG | + | chr3.3:60373726-60373745 | MS.gene63304:intron | 25.0% |
| AACACAGTAACTAAATTCTC+GGG | - | chr3.3:60372443-60372462 | None:intergenic | 30.0% | |
| ACAATATGTGAGATGTTTGT+AGG | - | chr3.3:60372131-60372150 | None:intergenic | 30.0% | |
| AGTACATTCTTCCAATATTC+TGG | - | chr3.3:60373329-60373348 | None:intergenic | 30.0% | |
| ATTACAAACCACCTAACATT+TGG | - | chr3.3:60372395-60372414 | None:intergenic | 30.0% | |
| ATTTAGCTGTTTGTCCAAAA+AGG | - | chr3.3:60373400-60373419 | None:intergenic | 30.0% | |
| CAACACAGTAACTAAATTCT+CGG | - | chr3.3:60372444-60372463 | None:intergenic | 30.0% | |
| GAGAATTTAGTTACTGTGTT+GGG | + | chr3.3:60372443-60372462 | MS.gene63304:CDS | 30.0% | |
| GATAAGATATGAAGAGTTTC+TGG | + | chr3.3:60373462-60373481 | MS.gene63304:intron | 30.0% | |
| GTTTCATTCTCAATAAGAGT+TGG | + | chr3.3:60371972-60371991 | MS.gene63304:CDS | 30.0% | |
| TGATCCAGGAAAAATATAGA+TGG | - | chr3.3:60373182-60373201 | None:intergenic | 30.0% | |
| TGTATAACATGTAAATGCTC+CGG | - | chr3.3:60372077-60372096 | None:intergenic | 30.0% | |
| ! | AAATGTTAGGTGGTTTGTAA+TGG | + | chr3.3:60372394-60372413 | MS.gene63304:CDS | 30.0% |
| ! | AATGTTAGGTGGTTTGTAAT+GGG | + | chr3.3:60372395-60372414 | MS.gene63304:CDS | 30.0% |
| ! | ATCTATATTTTTCCTGGATC+AGG | + | chr3.3:60373181-60373200 | MS.gene63304:CDS | 30.0% |
| ! | CATTCTTATGATATGGCTTT+TGG | + | chr3.3:60372533-60372552 | MS.gene63304:CDS | 30.0% |
| ! | GATGGTCAATATCTATTTCT+TGG | + | chr3.3:60373012-60373031 | MS.gene63304:CDS | 30.0% |
| ! | GTTTGTAGGTATTGTATCAA+TGG | - | chr3.3:60372117-60372136 | None:intergenic | 30.0% |
| ! | TGGTCAATATCTATTTCTTG+GGG | + | chr3.3:60373014-60373033 | MS.gene63304:CDS | 30.0% |
| !! | GTATGTTTTGTTATACCTGA+TGG | - | chr3.3:60372715-60372734 | None:intergenic | 30.0% |
| ACACAGTAACTAAATTCTCG+GGG | - | chr3.3:60372442-60372461 | None:intergenic | 35.0% | |
| ACCAGAAAAAATAGGTGACT+TGG | + | chr3.3:60371950-60371969 | MS.gene63304:CDS | 35.0% | |
| CAAGTGATATCGATGCTATA+AGG | - | chr3.3:60372010-60372029 | None:intergenic | 35.0% | |
| CATATAAAATCTCACAGGGA+TGG | + | chr3.3:60372291-60372310 | MS.gene63304:CDS | 35.0% | |
| CATCGAGTATTAAACGTGAA+AGG | - | chr3.3:60373134-60373153 | None:intergenic | 35.0% | |
| CGAGAATTTAGTTACTGTGT+TGG | + | chr3.3:60372442-60372461 | MS.gene63304:CDS | 35.0% | |
| CTATAAGAGACATGTTGACA+AGG | + | chr3.3:60373235-60373254 | MS.gene63304:CDS | 35.0% | |
| CTTGTCAACATGTCTCTTAT+AGG | - | chr3.3:60373237-60373256 | None:intergenic | 35.0% | |
| CTTTCACGTTTAATACTCGA+TGG | + | chr3.3:60373132-60373151 | MS.gene63304:CDS | 35.0% | |
| GAAGTGTGCATATCAGAATA+AGG | + | chr3.3:60373800-60373819 | MS.gene63304:CDS | 35.0% | |
| TACTCCTAATTCGTTTACAC+AGG | - | chr3.3:60372669-60372688 | None:intergenic | 35.0% | |
| TATGGAATTAGCATATCGTC+CGG | - | chr3.3:60372275-60372294 | None:intergenic | 35.0% | |
| TCTTTCAGCTTGACATTAGA+GGG | + | chr3.3:60372805-60372824 | MS.gene63304:intron | 35.0% | |
| TTCTTTCAGCTTGACATTAG+AGG | + | chr3.3:60372804-60372823 | MS.gene63304:intron | 35.0% | |
| ! | AAAGCGTTTGTTACGATCAT+AGG | + | chr3.3:60372985-60373004 | MS.gene63304:CDS | 35.0% |
| ! | AGCTAGACTAGCCAATATTA+TGG | + | chr3.3:60372589-60372608 | MS.gene63304:CDS | 35.0% |
| ! | CATCCCTGTGAGATTTTATA+TGG | - | chr3.3:60372293-60372312 | None:intergenic | 35.0% |
| ! | CATTGCAGACGTTTAAAACA+TGG | + | chr3.3:60373090-60373109 | MS.gene63304:CDS | 35.0% |
| ! | GAAACCAAAGAATTTGAAGC+CGG | + | chr3.3:60372253-60372272 | MS.gene63304:CDS | 35.0% |
| ! | TCTTATGATATGGCTTTTGG+TGG | + | chr3.3:60372536-60372555 | MS.gene63304:CDS | 35.0% |
| ! | TGTAATGGGAGATGATGATA+CGG | + | chr3.3:60372409-60372428 | MS.gene63304:CDS | 35.0% |
| ! | TTTTAAATCAGGTACCACGT+AGG | + | chr3.3:60373737-60373756 | MS.gene63304:intron | 35.0% |
| !! | ATGGTTCTGATCAAAGAGTT+TGG | + | chr3.3:60372642-60372661 | MS.gene63304:CDS | 35.0% |
| !! | CATGTTTTAAACGTCTGCAA+TGG | - | chr3.3:60373092-60373111 | None:intergenic | 35.0% |
| !! | GTTTACGAAAGCTTTAGACT+TGG | + | chr3.3:60372365-60372384 | MS.gene63304:CDS | 35.0% |
| !! | TACATCATTGTTGATAACGG+CGG | + | chr3.3:60373055-60373074 | MS.gene63304:CDS | 35.0% |
| !! | TGGTTCTGATCAAAGAGTTT+GGG | + | chr3.3:60372643-60372662 | MS.gene63304:CDS | 35.0% |
| !!! | ACCAAGTCACCTATTTTTTC+TGG | - | chr3.3:60371954-60371973 | None:intergenic | 35.0% |
| AAGAGACATGTTGACAAGGA+AGG | + | chr3.3:60373239-60373258 | MS.gene63304:CDS | 40.0% | |
| ACATGTAAATGCTCCGGTAA+TGG | - | chr3.3:60372071-60372090 | None:intergenic | 40.0% | |
| ATATTCTGGATCCAGCTTCA+AGG | - | chr3.3:60373315-60373334 | None:intergenic | 40.0% | |
| ATGGTTGAAAGTGAGAGAGA+GGG | - | chr3.3:60373361-60373380 | None:intergenic | 40.0% | |
| CAATGCTGCAACTTTATGGA+TGG | + | chr3.3:60373760-60373779 | MS.gene63304:CDS | 40.0% | |
| CTGGTTTAGCGAATGTTGAA+TGG | - | chr3.3:60372037-60372056 | None:intergenic | 40.0% | |
| GACATTAGAGGGAATCCATA+TGG | + | chr3.3:60372816-60372835 | MS.gene63304:CDS | 40.0% | |
| GATCATGACAAGATTCCATC+CGG | - | chr3.3:60371902-60371921 | None:intergenic | 40.0% | |
| GGAAAAATATAGATGGCTGC+TGG | - | chr3.3:60373175-60373194 | None:intergenic | 40.0% | |
| GTATCTCTTACCAGAGAAAG+AGG | + | chr3.3:60372686-60372705 | MS.gene63304:CDS | 40.0% | |
| TAAAGTTTCTGCCTTGAAGC+TGG | + | chr3.3:60373301-60373320 | MS.gene63304:CDS | 40.0% | |
| TAGGCAATGCTGCAACTTTA+TGG | + | chr3.3:60373756-60373775 | MS.gene63304:CDS | 40.0% | |
| TATGGTTGAAAGTGAGAGAG+AGG | - | chr3.3:60373362-60373381 | None:intergenic | 40.0% | |
| TGAAGCTGGATCCAGAATAT+TGG | + | chr3.3:60373315-60373334 | MS.gene63304:CDS | 40.0% | |
| ! | ACACACACGAAGTTCCTTTT+TGG | + | chr3.3:60373383-60373402 | MS.gene63304:intron | 40.0% |
| ! | GAAGACATTTGACTTTGGTC+CGG | - | chr3.3:60372912-60372931 | None:intergenic | 40.0% |
| ! | GCAGCCATCTATATTTTTCC+TGG | + | chr3.3:60373175-60373194 | MS.gene63304:CDS | 40.0% |
| ! | TATGATATGGCTTTTGGTGG+TGG | + | chr3.3:60372539-60372558 | MS.gene63304:CDS | 40.0% |
| ! | TATGGATGGAGGAAGCATAA+AGG | + | chr3.3:60373774-60373793 | MS.gene63304:CDS | 40.0% |
| !! | AAAGCTTGCTGTAGTTGCTA+CGG | - | chr3.3:60372190-60372209 | None:intergenic | 40.0% |
| !! | GACTTGGTTTGCCAAATGTT+AGG | + | chr3.3:60372381-60372400 | MS.gene63304:CDS | 40.0% |
| !! | TTGGTTTGCCAAATGTTAGG+TGG | + | chr3.3:60372384-60372403 | MS.gene63304:CDS | 40.0% |
| ACAAAACCTCTGCAAGCAGT+TGG | - | chr3.3:60372221-60372240 | None:intergenic | 45.0% | |
| AGACCGATGGTTTCCATTAC+CGG | + | chr3.3:60372055-60372074 | MS.gene63304:CDS | 45.0% | |
| AGGAACTTCGTGTGTGTGTA+TGG | - | chr3.3:60373380-60373399 | None:intergenic | 45.0% | |
| CAGAGAAAGAGGATTCCATC+AGG | + | chr3.3:60372697-60372716 | MS.gene63304:CDS | 45.0% | |
| CATATTGTATTCGGCATCGC+TGG | + | chr3.3:60372143-60372162 | MS.gene63304:CDS | 45.0% | |
| CTGATGGAATCCTCTTTCTC+TGG | - | chr3.3:60372699-60372718 | None:intergenic | 45.0% | |
| GGTGCAATTGATCAAGGTGA+TGG | - | chr3.3:60372881-60372900 | None:intergenic | 45.0% | |
| GTAGCAACTACAGCAAGCTT+TGG | + | chr3.3:60372189-60372208 | MS.gene63304:CDS | 45.0% | |
| GTTACGATCATAGGCGAAGA+TGG | + | chr3.3:60372994-60373013 | MS.gene63304:CDS | 45.0% | |
| TCACCTTGATCAATTGCACC+CGG | + | chr3.3:60372881-60372900 | MS.gene63304:CDS | 45.0% | |
| TCGTCCGGCTTCAAATTCTT+TGG | - | chr3.3:60372260-60372279 | None:intergenic | 45.0% | |
| TGCTGCAACTTTATGGATGG+AGG | + | chr3.3:60373763-60373782 | MS.gene63304:CDS | 45.0% | |
| TGGGCCTGTGTAAACGAATT+AGG | + | chr3.3:60372662-60372681 | MS.gene63304:CDS | 45.0% | |
| TTTCCTGGATCAGGTTAGCA+AGG | + | chr3.3:60373190-60373209 | MS.gene63304:CDS | 45.0% | |
| TTTGCTGCACTATCCTTGCA+GGG | - | chr3.3:60372968-60372987 | None:intergenic | 45.0% | |
| ! | AAGAAGTGCAAGAGAGCAGA+TGG | + | chr3.3:60373263-60373282 | MS.gene63304:CDS | 45.0% |
| ! | GATGGAGGAAGCATAAAGGA+TGG | + | chr3.3:60373778-60373797 | MS.gene63304:CDS | 45.0% |
| !! | TCGCTGGTTCATCGAAAATG+TGG | + | chr3.3:60372159-60372178 | MS.gene63304:CDS | 45.0% |
| AAAGTGAGAGAGAGGGAGAG+AGG | - | chr3.3:60373354-60373373 | None:intergenic | 50.0% | |
| AAGTGAGAGAGAGGGAGAGA+GGG | - | chr3.3:60373353-60373372 | None:intergenic | 50.0% | |
| AAGTTGCAGCATTGCCTACG+TGG | - | chr3.3:60373754-60373773 | None:intergenic | 50.0% | |
| ACACCGGGTGCAATTGATCA+AGG | - | chr3.3:60372887-60372906 | None:intergenic | 50.0% | |
| ACATGGCGAAGTTCGAGTGA+TGG | + | chr3.3:60373107-60373126 | MS.gene63304:CDS | 50.0% | |
| CATCTGCAGTTCGGATATCG+CGG | + | chr3.3:60372339-60372358 | MS.gene63304:CDS | 50.0% | |
| CATTCGCTAAACCAGACCGA+TGG | + | chr3.3:60372042-60372061 | MS.gene63304:CDS | 50.0% | |
| CTTTGCTGCACTATCCTTGC+AGG | - | chr3.3:60372969-60372988 | None:intergenic | 50.0% | |
| TCAATTGCACCCGGTGTTTC+CGG | + | chr3.3:60372890-60372909 | MS.gene63304:CDS | 50.0% | |
| TGACTTTGGTCCGGAAACAC+CGG | - | chr3.3:60372903-60372922 | None:intergenic | 50.0% | |
| TGCACTCTGCATCTGCAGTT+CGG | + | chr3.3:60372330-60372349 | MS.gene63304:CDS | 50.0% | |
| TGCGCGGCTAAAAGACCATA+TGG | - | chr3.3:60372834-60372853 | None:intergenic | 50.0% | |
| TGGAATCCAACTGCTTGCAG+AGG | + | chr3.3:60372212-60372231 | MS.gene63304:CDS | 50.0% | |
| ! | GCAACTACAGCAAGCTTTGG+TGG | + | chr3.3:60372192-60372211 | MS.gene63304:CDS | 50.0% |
| ! | TGGTGGGAATTCTGAGAGTG+TGG | + | chr3.3:60372496-60372515 | MS.gene63304:CDS | 50.0% |
| !! | AGGTGATGGAGTGACACAAG+CGG | - | chr3.3:60372867-60372886 | None:intergenic | 50.0% |
| !! | CACAGGGATGGACTAAGTTC+AGG | + | chr3.3:60372303-60372322 | MS.gene63304:CDS | 50.0% |
| !! | CTGCTTGCAGAGGTTTTGTC+TGG | + | chr3.3:60372222-60372241 | MS.gene63304:CDS | 50.0% |
| !! | GCTCCGGTAATGGAAACCAT+CGG | - | chr3.3:60372061-60372080 | None:intergenic | 50.0% |
| !! | GGTAATGGAAACCATCGGTC+TGG | - | chr3.3:60372056-60372075 | None:intergenic | 50.0% |
| !!! | GATATGGCTTTTGGTGGTGG+TGG | + | chr3.3:60372542-60372561 | MS.gene63304:CDS | 50.0% |
| ATGGCTGCTGGCATACGTCA+GGG | - | chr3.3:60373163-60373182 | None:intergenic | 55.0% | |
| CATACGACCTTGACCCTGCA+AGG | + | chr3.3:60372952-60372971 | MS.gene63304:CDS | 55.0% | |
| GACTTTGGTCCGGAAACACC+GGG | - | chr3.3:60372902-60372921 | None:intergenic | 55.0% | |
| GCACTATCCTTGCAGGGTCA+AGG | - | chr3.3:60372962-60372981 | None:intergenic | 55.0% | |
| TCGCCTTGCTAACCTGATCC+AGG | - | chr3.3:60373196-60373215 | None:intergenic | 55.0% | |
| TGGATCAGGTTAGCAAGGCG+AGG | + | chr3.3:60373195-60373214 | MS.gene63304:CDS | 55.0% | |
| CAGGTTAGCAAGGCGAGGAC+TGG | + | chr3.3:60373200-60373219 | MS.gene63304:CDS | 60.0% | |
| GATGGCTGCTGGCATACGTC+AGG | - | chr3.3:60373164-60373183 | None:intergenic | 60.0% | |
| ! | AGTGACACAAGCGGTGCCAG+AGG | - | chr3.3:60372858-60372877 | None:intergenic | 60.0% |
| ! | GTGACACAAGCGGTGCCAGA+GGG | - | chr3.3:60372857-60372876 | None:intergenic | 60.0% |
| ! | TCTTTTAGCCGCGCACCCTC+TGG | + | chr3.3:60372839-60372858 | MS.gene63304:CDS | 60.0% |
| ! | AAGCGGTGCCAGAGGGTGCG+CGG | - | chr3.3:60372850-60372869 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 60371888 | 60373855 | 60371888 | ID=MS.gene63304 |
| chr3.3 | mRNA | 60371888 | 60373855 | 60371888 | ID=MS.gene63304.t1;Parent=MS.gene63304 |
| chr3.3 | exon | 60371888 | 60372718 | 60371888 | ID=MS.gene63304.t1.exon1;Parent=MS.gene63304.t1 |
| chr3.3 | CDS | 60371888 | 60372718 | 60371888 | ID=cds.MS.gene63304.t1;Parent=MS.gene63304.t1 |
| chr3.3 | exon | 60372813 | 60373343 | 60372813 | ID=MS.gene63304.t1.exon2;Parent=MS.gene63304.t1 |
| chr3.3 | CDS | 60372813 | 60373343 | 60372813 | ID=cds.MS.gene63304.t1;Parent=MS.gene63304.t1 |
| chr3.3 | exon | 60373748 | 60373855 | 60373748 | ID=MS.gene63304.t1.exon3;Parent=MS.gene63304.t1 |
| chr3.3 | CDS | 60373748 | 60373855 | 60373748 | ID=cds.MS.gene63304.t1;Parent=MS.gene63304.t1 |
| Gene Sequence |
| Protein sequence |
