Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055519.t1 | RHN70100.1 | 98.4 | 252 | 4 | 0 | 1 | 252 | 63 | 314 | 1.70E-132 | 482.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055519.t1 | B8BKP4 | 64.3 | 210 | 74 | 1 | 9 | 218 | 11 | 219 | 8.0e-70 | 265.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055519.t1 | G7J3C8 | 98.4 | 252 | 4 | 0 | 1 | 252 | 1 | 252 | 1.2e-132 | 482.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055519 | MS.gene06243 | 0.981941 | 7.88E-154 | -1.69E-46 |
| MS.gene055519 | MS.gene22310 | 0.833469 | 5.24E-56 | -1.69E-46 |
| MS.gene055519 | MS.gene44994 | 0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene055519 | MS.gene47377 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene055519 | MS.gene49284 | 0.808232 | 3.43E-50 | -1.69E-46 |
| MS.gene055519 | MS.gene63304 | 0.823565 | 1.29E-53 | -1.69E-46 |
| MS.gene055519 | MS.gene66210 | 0.838 | 3.73E-57 | -1.69E-46 |
| MS.gene055519 | MS.gene72257 | 0.824109 | 9.65E-54 | -1.69E-46 |
| MS.gene055519 | MS.gene79284 | 0.811043 | 8.53E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055519.t1 | MTR_3g098910 | 96.753 | 308 | 9 | 1 | 1 | 307 | 1 | 308 | 0.0 | 610 |
| MS.gene055519.t1 | MTR_8g096310 | 64.017 | 239 | 86 | 0 | 10 | 248 | 10 | 248 | 1.35e-114 | 332 |
| MS.gene055519.t1 | MTR_8g096320 | 52.743 | 237 | 107 | 3 | 1 | 233 | 1 | 236 | 1.46e-85 | 258 |
| MS.gene055519.t1 | MTR_7g405730 | 46.454 | 282 | 133 | 4 | 1 | 282 | 1 | 264 | 4.48e-81 | 246 |
| MS.gene055519.t1 | MTR_7g405710 | 52.941 | 238 | 107 | 2 | 1 | 238 | 1 | 233 | 5.19e-81 | 247 |
| MS.gene055519.t1 | MTR_5g067530 | 47.826 | 276 | 134 | 4 | 1 | 275 | 1 | 267 | 5.76e-80 | 244 |
| MS.gene055519.t1 | MTR_2g007890 | 43.537 | 294 | 147 | 5 | 1 | 294 | 4 | 278 | 2.56e-73 | 227 |
| MS.gene055519.t1 | MTR_7g007490 | 50.218 | 229 | 112 | 2 | 1 | 228 | 1 | 228 | 4.24e-71 | 221 |
| MS.gene055519.t1 | MTR_5g092600 | 46.250 | 240 | 123 | 3 | 12 | 247 | 13 | 250 | 2.46e-70 | 218 |
| MS.gene055519.t1 | MTR_3g098930 | 51.020 | 196 | 93 | 3 | 4 | 198 | 5 | 198 | 7.61e-64 | 200 |
| MS.gene055519.t1 | MTR_8g096320 | 50.000 | 182 | 86 | 3 | 56 | 233 | 1 | 181 | 3.04e-58 | 186 |
| MS.gene055519.t1 | MTR_2g436310 | 41.627 | 209 | 121 | 1 | 9 | 217 | 5 | 212 | 1.05e-49 | 165 |
| MS.gene055519.t1 | MTR_3g080990 | 36.585 | 246 | 149 | 5 | 11 | 252 | 10 | 252 | 2.35e-44 | 152 |
| MS.gene055519.t1 | MTR_8g099730 | 33.858 | 254 | 159 | 5 | 1 | 251 | 9 | 256 | 5.99e-42 | 145 |
| MS.gene055519.t1 | MTR_3g089125 | 36.161 | 224 | 137 | 4 | 4 | 225 | 2 | 221 | 1.47e-41 | 144 |
| MS.gene055519.t1 | MTR_1g028460 | 36.986 | 219 | 133 | 3 | 8 | 222 | 5 | 222 | 5.20e-41 | 143 |
| MS.gene055519.t1 | MTR_6g007633 | 37.333 | 225 | 135 | 4 | 4 | 223 | 3 | 226 | 6.75e-41 | 142 |
| MS.gene055519.t1 | MTR_6g007637 | 39.423 | 208 | 122 | 3 | 13 | 217 | 13 | 219 | 2.77e-40 | 141 |
| MS.gene055519.t1 | MTR_1g029380 | 37.220 | 223 | 130 | 4 | 10 | 228 | 6 | 222 | 1.09e-39 | 139 |
| MS.gene055519.t1 | MTR_6g007623 | 37.037 | 216 | 130 | 4 | 13 | 223 | 9 | 223 | 1.27e-38 | 136 |
| MS.gene055519.t1 | MTR_3g090950 | 36.255 | 251 | 146 | 9 | 8 | 250 | 5 | 249 | 7.23e-37 | 132 |
| MS.gene055519.t1 | MTR_8g042490 | 37.441 | 211 | 124 | 3 | 11 | 217 | 16 | 222 | 1.22e-36 | 131 |
| MS.gene055519.t1 | MTR_3g090940 | 35.458 | 251 | 148 | 8 | 8 | 250 | 5 | 249 | 2.02e-36 | 131 |
| MS.gene055519.t1 | MTR_4g106990 | 33.171 | 205 | 134 | 2 | 29 | 231 | 35 | 238 | 3.31e-34 | 125 |
| MS.gene055519.t1 | MTR_2g073190 | 34.562 | 217 | 138 | 2 | 11 | 225 | 16 | 230 | 2.52e-31 | 124 |
| MS.gene055519.t1 | MTR_8g099730 | 31.313 | 198 | 128 | 4 | 56 | 251 | 1 | 192 | 4.28e-26 | 102 |
| MS.gene055519.t1 | MTR_6g007610 | 28.372 | 215 | 135 | 5 | 13 | 213 | 12 | 221 | 9.76e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055519.t1 | AT5G23660 | 55.294 | 255 | 94 | 3 | 5 | 259 | 7 | 241 | 6.46e-94 | 280 |
| MS.gene055519.t1 | AT5G50800 | 50.676 | 296 | 132 | 6 | 1 | 288 | 1 | 290 | 2.01e-93 | 279 |
| MS.gene055519.t1 | AT3G48740 | 50.890 | 281 | 124 | 4 | 9 | 281 | 11 | 285 | 7.74e-91 | 272 |
| MS.gene055519.t1 | AT4G25010 | 50.719 | 278 | 131 | 4 | 5 | 279 | 5 | 279 | 9.73e-89 | 266 |
| MS.gene055519.t1 | AT5G13170 | 45.695 | 302 | 149 | 6 | 1 | 302 | 4 | 290 | 1.27e-87 | 264 |
| MS.gene055519.t1 | AT5G50790 | 43.197 | 294 | 153 | 5 | 1 | 285 | 1 | 289 | 2.81e-81 | 248 |
| MS.gene055519.t1 | AT2G39060 | 42.972 | 249 | 122 | 2 | 8 | 237 | 8 | 255 | 4.56e-65 | 205 |
| MS.gene055519.t1 | AT4G15920 | 37.441 | 211 | 132 | 0 | 9 | 219 | 5 | 215 | 4.32e-52 | 171 |
| MS.gene055519.t1 | AT3G16690 | 37.668 | 223 | 137 | 2 | 2 | 223 | 33 | 254 | 9.20e-52 | 171 |
| MS.gene055519.t1 | AT3G16690 | 37.443 | 219 | 135 | 2 | 6 | 223 | 2 | 219 | 7.41e-51 | 168 |
| MS.gene055519.t1 | AT1G21460 | 40.816 | 245 | 129 | 6 | 12 | 254 | 8 | 238 | 4.81e-48 | 161 |
| MS.gene055519.t1 | AT4G10850 | 35.268 | 224 | 142 | 2 | 3 | 223 | 4 | 227 | 7.59e-44 | 150 |
| MS.gene055519.t1 | AT1G66770 | 32.489 | 237 | 158 | 1 | 13 | 247 | 14 | 250 | 8.73e-41 | 143 |
| MS.gene055519.t1 | AT5G40260 | 40.092 | 217 | 124 | 5 | 7 | 218 | 6 | 221 | 6.15e-40 | 140 |
| MS.gene055519.t1 | AT5G53190 | 31.119 | 286 | 160 | 8 | 8 | 284 | 5 | 262 | 2.02e-39 | 139 |
| MS.gene055519.t1 | AT5G62850 | 33.790 | 219 | 139 | 4 | 1 | 216 | 1 | 216 | 3.05e-39 | 138 |
| MS.gene055519.t1 | AT1G21460 | 43.784 | 185 | 100 | 3 | 12 | 194 | 8 | 190 | 1.10e-37 | 133 |
| MS.gene055519.t1 | AT3G28007 | 38.095 | 210 | 123 | 4 | 13 | 218 | 12 | 218 | 8.76e-35 | 127 |
| MS.gene055519.t1 | AT3G14770 | 35.945 | 217 | 131 | 4 | 13 | 226 | 18 | 229 | 1.32e-34 | 126 |
| MS.gene055519.t1 | AT5G40260 | 41.361 | 191 | 106 | 5 | 7 | 192 | 6 | 195 | 8.54e-34 | 123 |
| MS.gene055519.t1 | AT5G62850 | 34.973 | 183 | 114 | 3 | 13 | 192 | 12 | 192 | 1.70e-32 | 120 |
| MS.gene055519.t1 | AT3G16690 | 33.333 | 192 | 112 | 3 | 6 | 182 | 2 | 192 | 1.04e-27 | 107 |
Find 57 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATCATTTCTTTGCTTTC+TGG | 0.098038 | 3.2:+82283583 | MS.gene055519:CDS |
| AAGAAGAGTTTCACCCTTCT+TGG | 0.240770 | 3.2:-82283819 | None:intergenic |
| TCTTTCGCATTTGGAGTTCT+AGG | 0.241498 | 3.2:+82283554 | MS.gene055519:CDS |
| GCACTCACAATAATGCTTAA+AGG | 0.256613 | 3.2:-82284303 | None:intergenic |
| TACACGTACCCTAACTTTCT+TGG | 0.259331 | 3.2:-82283909 | None:intergenic |
| CTTACTGCCCCAAGAAAGTT+AGG | 0.280598 | 3.2:+82283900 | MS.gene055519:CDS |
| ACACGTACCCTAACTTTCTT+GGG | 0.302349 | 3.2:-82283908 | None:intergenic |
| TTGATGAACTTTGTGGGATT+TGG | 0.311697 | 3.2:+82284177 | MS.gene055519:CDS |
| TATTGTGACTGTAGAGAAAA+AGG | 0.313551 | 3.2:+82285025 | MS.gene055519:CDS |
| AGTTTCACCCTTCTTGGTAT+AGG | 0.322134 | 3.2:-82283813 | None:intergenic |
| AACGTTGTGGGGTTAACATT+TGG | 0.325987 | 3.2:+82284840 | MS.gene055519:CDS |
| AGGAAGGAACTCTACACTTT+TGG | 0.334515 | 3.2:-82284456 | None:intergenic |
| TGGTAGCTTCTCATCAATTA+CGG | 0.338030 | 3.2:-82284907 | None:intergenic |
| CACTCACAATAATGCTTAAA+GGG | 0.349067 | 3.2:-82284302 | None:intergenic |
| AGTCATCTATCTTTCGCATT+TGG | 0.354656 | 3.2:+82283545 | MS.gene055519:CDS |
| CACTATTTAGTGCAATGCTT+TGG | 0.369787 | 3.2:+82283780 | MS.gene055519:CDS |
| CACACAACCGAATGCATTGA+TGG | 0.370212 | 3.2:-82283846 | None:intergenic |
| GGTAGCTTCTCATCAATTAC+GGG | 0.374020 | 3.2:-82284906 | None:intergenic |
| GAAGGACGTATCAAGCTTCT+TGG | 0.381738 | 3.2:+82284240 | MS.gene055519:CDS |
| AATGTTAACCCCACAACGTT+CGG | 0.388997 | 3.2:-82284837 | None:intergenic |
| ACAATGTCTCCTTTATGTTC+TGG | 0.402350 | 3.2:-82284927 | None:intergenic |
| CTAAATAGTGCAGCCACATA+TGG | 0.415521 | 3.2:-82283767 | None:intergenic |
| CTTATCACCATCAATGCATT+CGG | 0.422646 | 3.2:+82283839 | MS.gene055519:CDS |
| AGGAGAAGTGAAAGTGGAAA+AGG | 0.437747 | 3.2:-82284476 | None:intergenic |
| ATGTTAACCCCACAACGTTC+GGG | 0.444928 | 3.2:-82284836 | None:intergenic |
| GGACAGCTCCCGAACGTTGT+GGG | 0.447921 | 3.2:+82284828 | MS.gene055519:intron |
| CAGCCACATATGGAATTGAT+TGG | 0.459983 | 3.2:-82283757 | None:intergenic |
| TGATGAGAATGAGAAGAAAC+AGG | 0.461226 | 3.2:+82285070 | MS.gene055519:CDS |
| TTACAAATTCGATAAAATGT+TGG | 0.461818 | 3.2:-82283713 | None:intergenic |
| TCCTCATAAGCGCGGTTATG+TGG | 0.463599 | 3.2:+82284498 | MS.gene055519:CDS |
| GATTGTGTTGATGAACTTTG+TGG | 0.471961 | 3.2:+82284170 | MS.gene055519:CDS |
| ATGAGGAGGAGAAGTGAAAG+TGG | 0.474274 | 3.2:-82284482 | None:intergenic |
| TTTCCAATCAATTCCATATG+TGG | 0.478701 | 3.2:+82283754 | MS.gene055519:CDS |
| GCCACATAACCGCGCTTATG+AGG | 0.482912 | 3.2:-82284499 | None:intergenic |
| GAGAAGCTACCAGAACATAA+AGG | 0.487420 | 3.2:+82284918 | MS.gene055519:CDS |
| GCGGTTATGTGGCTGTTGTA+TGG | 0.506943 | 3.2:+82284509 | MS.gene055519:CDS |
| TGGACAGCTCCCGAACGTTG+TGG | 0.525233 | 3.2:+82284827 | MS.gene055519:intron |
| AAAACAGAAGAGAAGGTTAG+TGG | 0.526127 | 3.2:+82285152 | MS.gene055519:CDS |
| TTACAGTAACATAGATATCT+CGG | 0.536034 | 3.2:-82284541 | None:intergenic |
| ATTGTGTTGATGAACTTTGT+GGG | 0.543350 | 3.2:+82284171 | MS.gene055519:CDS |
| GACGTATCAAGCTTCTTGGA+TGG | 0.557609 | 3.2:+82284244 | MS.gene055519:CDS |
| TATCAACAAAACAGAAGAGA+AGG | 0.559044 | 3.2:+82285145 | MS.gene055519:CDS |
| TTCCTAGCAAAACAAGAAGA+AGG | 0.574175 | 3.2:+82284222 | MS.gene055519:CDS |
| TGTAAGAAGAAATCAACAGA+AGG | 0.576661 | 3.2:+82283731 | MS.gene055519:CDS |
| GACAGCTCCCGAACGTTGTG+GGG | 0.582179 | 3.2:+82284829 | MS.gene055519:intron |
| TTATGTAGATGTCAACATTG+AGG | 0.602218 | 3.2:+82284145 | MS.gene055519:intron |
| GAAGTGAAAGTGGAAAAGGA+AGG | 0.605323 | 3.2:-82284472 | None:intergenic |
| ATGACTGTGGTGGGACGACA+TGG | 0.619238 | 3.2:-82283528 | None:intergenic |
| ACATAACCGCGCTTATGAGG+AGG | 0.633283 | 3.2:-82284496 | None:intergenic |
| TTACTGCCCCAAGAAAGTTA+GGG | 0.638169 | 3.2:+82283901 | MS.gene055519:CDS |
| ACTTCTCCTCCTCATAAGCG+CGG | 0.645264 | 3.2:+82284490 | MS.gene055519:CDS |
| CACGTACCCTAACTTTCTTG+GGG | 0.660388 | 3.2:-82283907 | None:intergenic |
| CGAAAGATAGATGACTGTGG+TGG | 0.668857 | 3.2:-82283538 | None:intergenic |
| ACTCACAATAATGCTTAAAG+GGG | 0.675502 | 3.2:-82284301 | None:intergenic |
| GAAAGATAGATGACTGTGGT+GGG | 0.688303 | 3.2:-82283537 | None:intergenic |
| AGTAACTCAAGACAAAACAA+AGG | 0.690695 | 3.2:+82285097 | MS.gene055519:CDS |
| ATGCGAAAGATAGATGACTG+TGG | 0.805804 | 3.2:-82283541 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAATGTTGATCA+TGG | - | chr3.2:82284114-82284133 | None:intergenic | 15.0% |
| !! | AAAATCAATACTACTAAATT+TGG | + | chr3.2:82284603-82284622 | MS.gene055519:intron | 15.0% |
| !! | AAATTTACAATTAAATGAAG+TGG | - | chr3.2:82283643-82283662 | None:intergenic | 15.0% |
| !! | CATTTGTATTAATTAATTTC+TGG | + | chr3.2:82284749-82284768 | MS.gene055519:intron | 15.0% |
| !!! | CAAAATCTTATGTTTTTTTA+TGG | + | chr3.2:82284807-82284826 | MS.gene055519:intron | 15.0% |
| !! | TTACAAATTCGATAAAATGT+TGG | - | chr3.2:82283716-82283735 | None:intergenic | 20.0% |
| ! | ATTATTCTTTCTACTTACAG+TGG | - | chr3.2:82283611-82283630 | None:intergenic | 25.0% |
| ! | ATTTAACATTCCAACAATGT+TGG | - | chr3.2:82283979-82283998 | None:intergenic | 25.0% |
| ! | TTACAGTAACATAGATATCT+CGG | - | chr3.2:82284544-82284563 | None:intergenic | 25.0% |
| ! | TTTAACATTCCAACAATGTT+GGG | - | chr3.2:82283978-82283997 | None:intergenic | 25.0% |
| !!! | TAGTTGCTATTTTGTCTTTA+TGG | + | chr3.2:82284772-82284791 | MS.gene055519:intron | 25.0% |
| !!! | TTTTTTTTGACAAAGTTGCT+AGG | + | chr3.2:82284006-82284025 | MS.gene055519:intron | 25.0% |
| AAAAGCTAATTCTAGCATGT+CGG | - | chr3.2:82284344-82284363 | None:intergenic | 30.0% | |
| ACTCACAATAATGCTTAAAG+GGG | - | chr3.2:82284304-82284323 | None:intergenic | 30.0% | |
| AGGATGATTAAAATCATGCA+TGG | - | chr3.2:82284416-82284435 | None:intergenic | 30.0% | |
| AGTAACTCAAGACAAAACAA+AGG | + | chr3.2:82285097-82285116 | MS.gene055519:CDS | 30.0% | |
| CACTCACAATAATGCTTAAA+GGG | - | chr3.2:82284305-82284324 | None:intergenic | 30.0% | |
| TACATCATTTCTTTGCTTTC+TGG | + | chr3.2:82283583-82283602 | MS.gene055519:CDS | 30.0% | |
| TATCAACAAAACAGAAGAGA+AGG | + | chr3.2:82285145-82285164 | MS.gene055519:CDS | 30.0% | |
| TATTGTGACTGTAGAGAAAA+AGG | + | chr3.2:82285025-82285044 | MS.gene055519:CDS | 30.0% | |
| TGTAAGAAGAAATCAACAGA+AGG | + | chr3.2:82283731-82283750 | MS.gene055519:CDS | 30.0% | |
| TTATGTAGATGTCAACATTG+AGG | + | chr3.2:82284145-82284164 | MS.gene055519:intron | 30.0% | |
| TTTCCAATCAATTCCATATG+TGG | + | chr3.2:82283754-82283773 | MS.gene055519:CDS | 30.0% | |
| ! | ATTGTGTTGATGAACTTTGT+GGG | + | chr3.2:82284171-82284190 | MS.gene055519:CDS | 30.0% |
| ! | TTTTATGCCTATACCAAGAA+GGG | + | chr3.2:82283806-82283825 | MS.gene055519:CDS | 30.0% |
| !! | TTGTTTTGTCTTGAGTTACT+TGG | - | chr3.2:82285097-82285116 | None:intergenic | 30.0% |
| !!! | TCATCATTTGTTGTTTTGCT+TGG | - | chr3.2:82284981-82285000 | None:intergenic | 30.0% |
| AAAACAGAAGAGAAGGTTAG+TGG | + | chr3.2:82285152-82285171 | MS.gene055519:CDS | 35.0% | |
| ACAATGTCTCCTTTATGTTC+TGG | - | chr3.2:82284930-82284949 | None:intergenic | 35.0% | |
| AGTCATCTATCTTTCGCATT+TGG | + | chr3.2:82283545-82283564 | MS.gene055519:CDS | 35.0% | |
| CACTATTTAGTGCAATGCTT+TGG | + | chr3.2:82283780-82283799 | MS.gene055519:CDS | 35.0% | |
| CTTATCACCATCAATGCATT+CGG | + | chr3.2:82283839-82283858 | MS.gene055519:CDS | 35.0% | |
| GCACTCACAATAATGCTTAA+AGG | - | chr3.2:82284306-82284325 | None:intergenic | 35.0% | |
| TGATGAGAATGAGAAGAAAC+AGG | + | chr3.2:82285070-82285089 | MS.gene055519:CDS | 35.0% | |
| TGGTAGCTTCTCATCAATTA+CGG | - | chr3.2:82284910-82284929 | None:intergenic | 35.0% | |
| TTCCTAGCAAAACAAGAAGA+AGG | + | chr3.2:82284222-82284241 | MS.gene055519:CDS | 35.0% | |
| TTGATGAACTTTGTGGGATT+TGG | + | chr3.2:82284177-82284196 | MS.gene055519:CDS | 35.0% | |
| ! | GATTGTGTTGATGAACTTTG+TGG | + | chr3.2:82284170-82284189 | MS.gene055519:CDS | 35.0% |
| ! | GTTTTATGCCTATACCAAGA+AGG | + | chr3.2:82283805-82283824 | MS.gene055519:CDS | 35.0% |
| AACGTTGTGGGGTTAACATT+TGG | + | chr3.2:82284840-82284859 | MS.gene055519:CDS | 40.0% | |
| AAGAAGAGTTTCACCCTTCT+TGG | - | chr3.2:82283822-82283841 | None:intergenic | 40.0% | |
| AATGTTAACCCCACAACGTT+CGG | - | chr3.2:82284840-82284859 | None:intergenic | 40.0% | |
| ACACGTACCCTAACTTTCTT+GGG | - | chr3.2:82283911-82283930 | None:intergenic | 40.0% | |
| AGCTAAAGTCCCAACATTGT+TGG | + | chr3.2:82283966-82283985 | MS.gene055519:intron | 40.0% | |
| AGGAGAAGTGAAAGTGGAAA+AGG | - | chr3.2:82284479-82284498 | None:intergenic | 40.0% | |
| AGTAAGTGAGAAAAACTGCG+AGG | - | chr3.2:82283886-82283905 | None:intergenic | 40.0% | |
| AGTTTCACCCTTCTTGGTAT+AGG | - | chr3.2:82283816-82283835 | None:intergenic | 40.0% | |
| ATGCGAAAGATAGATGACTG+TGG | - | chr3.2:82283544-82283563 | None:intergenic | 40.0% | |
| CAGCCACATATGGAATTGAT+TGG | - | chr3.2:82283760-82283779 | None:intergenic | 40.0% | |
| CTAAATAGTGCAGCCACATA+TGG | - | chr3.2:82283770-82283789 | None:intergenic | 40.0% | |
| GAAAGATAGATGACTGTGGT+GGG | - | chr3.2:82283540-82283559 | None:intergenic | 40.0% | |
| GAAGTGAAAGTGGAAAAGGA+AGG | - | chr3.2:82284475-82284494 | None:intergenic | 40.0% | |
| GAGAAGCTACCAGAACATAA+AGG | + | chr3.2:82284918-82284937 | MS.gene055519:CDS | 40.0% | |
| GGTAGCTTCTCATCAATTAC+GGG | - | chr3.2:82284909-82284928 | None:intergenic | 40.0% | |
| TACACGTACCCTAACTTTCT+TGG | - | chr3.2:82283912-82283931 | None:intergenic | 40.0% | |
| TTACTGCCCCAAGAAAGTTA+GGG | + | chr3.2:82283901-82283920 | MS.gene055519:CDS | 40.0% | |
| ! | AGGAAGGAACTCTACACTTT+TGG | - | chr3.2:82284459-82284478 | None:intergenic | 40.0% |
| ! | TCTTTCGCATTTGGAGTTCT+AGG | + | chr3.2:82283554-82283573 | MS.gene055519:CDS | 40.0% |
| !!! | GTCCTTCTTCTTGTTTTGCT+AGG | - | chr3.2:82284227-82284246 | None:intergenic | 40.0% |
| ATGAGGAGGAGAAGTGAAAG+TGG | - | chr3.2:82284485-82284504 | None:intergenic | 45.0% | |
| ATGTTAACCCCACAACGTTC+GGG | - | chr3.2:82284839-82284858 | None:intergenic | 45.0% | |
| CACACAACCGAATGCATTGA+TGG | - | chr3.2:82283849-82283868 | None:intergenic | 45.0% | |
| CACGTACCCTAACTTTCTTG+GGG | - | chr3.2:82283910-82283929 | None:intergenic | 45.0% | |
| CGAAAGATAGATGACTGTGG+TGG | - | chr3.2:82283541-82283560 | None:intergenic | 45.0% | |
| CTTACTGCCCCAAGAAAGTT+AGG | + | chr3.2:82283900-82283919 | MS.gene055519:CDS | 45.0% | |
| GAAGGACGTATCAAGCTTCT+TGG | + | chr3.2:82284240-82284259 | MS.gene055519:CDS | 45.0% | |
| GACGTATCAAGCTTCTTGGA+TGG | + | chr3.2:82284244-82284263 | MS.gene055519:CDS | 45.0% | |
| TGCGAATAACAACTCTCTGC+AGG | - | chr3.2:82284436-82284455 | None:intergenic | 45.0% | |
| ACATAACCGCGCTTATGAGG+AGG | - | chr3.2:82284499-82284518 | None:intergenic | 50.0% | |
| ACTTCTCCTCCTCATAAGCG+CGG | + | chr3.2:82284490-82284509 | MS.gene055519:CDS | 50.0% | |
| GCGGTTATGTGGCTGTTGTA+TGG | + | chr3.2:82284509-82284528 | MS.gene055519:CDS | 50.0% | |
| TCCTCATAAGCGCGGTTATG+TGG | + | chr3.2:82284498-82284517 | MS.gene055519:CDS | 50.0% | |
| GCCACATAACCGCGCTTATG+AGG | - | chr3.2:82284502-82284521 | None:intergenic | 55.0% | |
| GACAGCTCCCGAACGTTGTG+GGG | + | chr3.2:82284829-82284848 | MS.gene055519:intron | 60.0% | |
| GGACAGCTCCCGAACGTTGT+GGG | + | chr3.2:82284828-82284847 | MS.gene055519:intron | 60.0% | |
| TGGACAGCTCCCGAACGTTG+TGG | + | chr3.2:82284827-82284846 | MS.gene055519:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82283530 | 82285178 | 82283530 | ID=MS.gene055519 |
| chr3.2 | mRNA | 82283530 | 82285178 | 82283530 | ID=MS.gene055519.t1;Parent=MS.gene055519 |
| chr3.2 | exon | 82283530 | 82283612 | 82283530 | ID=MS.gene055519.t1.exon1;Parent=MS.gene055519.t1 |
| chr3.2 | CDS | 82283530 | 82283612 | 82283530 | ID=cds.MS.gene055519.t1;Parent=MS.gene055519.t1 |
| chr3.2 | exon | 82283712 | 82283922 | 82283712 | ID=MS.gene055519.t1.exon2;Parent=MS.gene055519.t1 |
| chr3.2 | CDS | 82283712 | 82283922 | 82283712 | ID=cds.MS.gene055519.t1;Parent=MS.gene055519.t1 |
| chr3.2 | exon | 82284153 | 82284317 | 82284153 | ID=MS.gene055519.t1.exon3;Parent=MS.gene055519.t1 |
| chr3.2 | CDS | 82284153 | 82284317 | 82284153 | ID=cds.MS.gene055519.t1;Parent=MS.gene055519.t1 |
| chr3.2 | exon | 82284440 | 82284559 | 82284440 | ID=MS.gene055519.t1.exon4;Parent=MS.gene055519.t1 |
| chr3.2 | CDS | 82284440 | 82284559 | 82284440 | ID=cds.MS.gene055519.t1;Parent=MS.gene055519.t1 |
| chr3.2 | exon | 82284834 | 82285178 | 82284834 | ID=MS.gene055519.t1.exon5;Parent=MS.gene055519.t1 |
| chr3.2 | CDS | 82284834 | 82285178 | 82284834 | ID=cds.MS.gene055519.t1;Parent=MS.gene055519.t1 |
| Gene Sequence |
| Protein sequence |
