AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63379

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63379.t1 MTR_2g075470 85.874 269 28 2 1 268 50 309 3.24e-158 442
MS.gene63379.t1 MTR_2g075470 83.838 198 22 2 1 197 50 238 3.05e-106 308
MS.gene63379.t1 MTR_2g075450 64.198 243 75 3 25 266 34 265 5.02e-103 301
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63379.t1 AT1G53460 41.532 248 129 4 19 266 76 307 4.24e-51 170

Find 41 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTCCAAATCCAATTTAT+TGG 0.151825 2.4:-21879628 None:intergenic
CATCTTTAAAATACCCATTT+TGG 0.169188 2.4:-21876974 None:intergenic
GAAATGTGATACCAATAAAT+TGG 0.198607 2.4:+21879617 MS.gene63379:CDS
TTGTACCATTTATACCAAAA+TGG 0.247649 2.4:+21876960 MS.gene63379:CDS
TTTGAGACTCCTTATGCTTT+GGG 0.287556 2.4:+21877038 MS.gene63379:CDS
TGATACCAATAAATTGGATT+TGG 0.294300 2.4:+21879623 MS.gene63379:CDS
GTTTGAGACTCCTTATGCTT+TGG 0.307272 2.4:+21877037 MS.gene63379:CDS
TTGATTCGCAGATGGCTATC+TGG 0.338869 2.4:+21879342 MS.gene63379:intron
AATTTGTGAATCAAGATGTT+TGG 0.383821 2.4:+21879595 MS.gene63379:CDS
TGTACCATTTATACCAAAAT+GGG 0.402765 2.4:+21876961 MS.gene63379:CDS
GAAAGCTCCTTCACAACAAA+TGG 0.406647 2.4:-21876918 None:intergenic
TGGTGTAATCAGTGAGAAAA+AGG 0.407055 2.4:+21876839 MS.gene63379:CDS
GAAGGAGCTTTCAATTGAAA+TGG 0.415268 2.4:+21876929 MS.gene63379:CDS
ACACTTGGTGCATCCTCAGC+TGG 0.449633 2.4:+21879680 MS.gene63379:CDS
TTGAAGCAAGTGGCAGTGTT+TGG 0.459813 2.4:+21879372 MS.gene63379:CDS
ATGCAAGATTTAACATTGGT+TGG 0.460291 2.4:+21877015 MS.gene63379:CDS
TTGGTTGCCCCTCGGTCAGC+AGG 0.465248 2.4:+21879391 MS.gene63379:CDS
TTCTCACTGATTACACCATC+AGG 0.481290 2.4:-21876834 None:intergenic
GGATTTGGAGATAACTATGA+AGG 0.483262 2.4:+21879638 MS.gene63379:CDS
TTAACATAACCCAAAGCATA+AGG 0.485174 2.4:-21877047 None:intergenic
AGCTATTTCAAGATTATCAC+TGG 0.490825 2.4:-21877090 None:intergenic
GGTTGTGAGAAAAGATGGTA+AGG 0.495953 2.4:+21876860 MS.gene63379:CDS
GGCAGTGTTTGGTTGCCCCT+CGG 0.497165 2.4:+21879383 MS.gene63379:CDS
CAGCTCGATGTCGCCGACAC+CGG 0.516997 2.4:-21876682 None:intergenic
TATTTCATATGCTTTACACT+TGG 0.545051 2.4:+21879665 MS.gene63379:CDS
AAAAGATGGTAAGGGAAAGG+TGG 0.553101 2.4:+21876869 MS.gene63379:CDS
GAGAGAACCATTTGTTGTGA+AGG 0.560428 2.4:+21876911 MS.gene63379:CDS
ATCGACGAAGACGAAGAATC+CGG 0.563125 2.4:+21876663 MS.gene63379:CDS
TTCGTCTTCGTCGATTGTTG+TGG 0.566838 2.4:-21876655 None:intergenic
CTGATTACACCATCAGGAAG+TGG 0.572580 2.4:-21876828 None:intergenic
GTTCATGCAAGATTTAACAT+TGG 0.578282 2.4:+21877011 MS.gene63379:CDS
ACAAATCAACCACTTCCTGA+TGG 0.589521 2.4:+21876819 MS.gene63379:CDS
ACATCATTCCTGCTGACCGA+GGG 0.592631 2.4:-21879399 None:intergenic
GACATCATTCCTGCTGACCG+AGG 0.603201 2.4:-21879400 None:intergenic
GAGAAAAGATGGTAAGGGAA+AGG 0.623732 2.4:+21876866 MS.gene63379:CDS
TGGAAGTGCATTGAAGCAAG+TGG 0.637806 2.4:+21879362 MS.gene63379:CDS
TCATCAGACACTACCAGCTG+AGG 0.654887 2.4:-21879693 None:intergenic
TCTTCCCTGCGAAAAGACTG+CGG 0.672569 2.4:+21879421 MS.gene63379:CDS
GTTGTGAGAAAAGATGGTAA+GGG 0.675052 2.4:+21876861 MS.gene63379:CDS
GAAGACGAAGAATCCGGTGT+CGG 0.690479 2.4:+21876669 MS.gene63379:CDS
CATCATTCCTGCTGACCGAG+GGG 0.710730 2.4:-21879398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTAAAATATGAAAC+CGG + chr2.4:21877489-21877508 MS.gene63379:intron 10.0%
!!! AAACATAATTTTTGATTATT+TGG - chr2.4:21878685-21878704 None:intergenic 10.0%
!!! TTAAAATTTTCAAAATATTC+CGG - chr2.4:21877479-21877498 None:intergenic 10.0%
!! ATAAATGAGCATATAATATT+AGG + chr2.4:21879236-21879255 MS.gene63379:intron 15.0%
!! ATTTGAATAAAAGGTTATTT+GGG + chr2.4:21877542-21877561 MS.gene63379:intron 15.0%
!! GTTAAAAGGTAAATATAATT+TGG - chr2.4:21878852-21878871 None:intergenic 15.0%
!!! AATAACAAAATTTTCCAAAT+TGG - chr2.4:21878345-21878364 None:intergenic 15.0%
!! ATTTACAATATAATGCAAGA+GGG - chr2.4:21879069-21879088 None:intergenic 20.0%
!! CATTTGAATAAAAGGTTATT+TGG + chr2.4:21877541-21877560 MS.gene63379:intron 20.0%
!! CTAGTTAGTATCATAAATAT+CGG + chr2.4:21878721-21878740 MS.gene63379:intron 20.0%
!! TATTTACAATATAATGCAAG+AGG - chr2.4:21879070-21879089 None:intergenic 20.0%
!! TTAAGCAGAAAAAATCAAAA+GGG + chr2.4:21876745-21876764 MS.gene63379:CDS 20.0%
!! TTTAAGCAGAAAAAATCAAA+AGG + chr2.4:21876744-21876763 MS.gene63379:CDS 20.0%
!! TTTAGTCAATAATCACAATA+GGG - chr2.4:21877518-21877537 None:intergenic 20.0%
!! TTTCCTTTAATTATACGATA+TGG + chr2.4:21878380-21878399 MS.gene63379:intron 20.0%
!!! TATTGTGATTATTGACTAAA+GGG + chr2.4:21877518-21877537 MS.gene63379:intron 20.0%
!!! TTAGATTACTATTAACTTGA+GGG + chr2.4:21878177-21878196 MS.gene63379:intron 20.0%
!!! TTTATGTTTTGTTTGATTAG+TGG + chr2.4:21878998-21879017 MS.gene63379:intron 20.0%
!!! TTTCACATTTGTATTTGTTT+TGG + chr2.4:21878575-21878594 MS.gene63379:intron 20.0%
!!! TTTTCAATTTCAACTTTCTT+TGG - chr2.4:21876777-21876796 None:intergenic 20.0%
! AATTTGTGAATCAAGATGTT+TGG + chr2.4:21879595-21879614 MS.gene63379:CDS 25.0%
! AGAAACAAATAGATAAATGC+GGG - chr2.4:21878218-21878237 None:intergenic 25.0%
! CAACCATATCGTATAATTAA+AGG - chr2.4:21878386-21878405 None:intergenic 25.0%
! CTTTAGTCAATAATCACAAT+AGG - chr2.4:21877519-21877538 None:intergenic 25.0%
! GAAATGTGATACCAATAAAT+TGG + chr2.4:21879617-21879636 MS.gene63379:CDS 25.0%
! GAGAAACAAATAGATAAATG+CGG - chr2.4:21878219-21878238 None:intergenic 25.0%
! GCTAACTATCAAAAGTTAAA+AGG - chr2.4:21878866-21878885 None:intergenic 25.0%
! TAAGCAGAAAAAATCAAAAG+GGG + chr2.4:21876746-21876765 MS.gene63379:CDS 25.0%
! TAAGTTAGAAAATACAGTGA+AGG - chr2.4:21879497-21879516 None:intergenic 25.0%
! TAGATCTTGTAAATCTCAAA+AGG + chr2.4:21879035-21879054 MS.gene63379:intron 25.0%
! TAGTCAGCTCAAATAATTTA+AGG + chr2.4:21877976-21877995 MS.gene63379:intron 25.0%
! TATCTCCAAATCCAATTTAT+TGG - chr2.4:21879631-21879650 None:intergenic 25.0%
! TATTTCATATGCTTTACACT+TGG + chr2.4:21879665-21879684 MS.gene63379:CDS 25.0%
! TGATACCAATAAATTGGATT+TGG + chr2.4:21879623-21879642 MS.gene63379:CDS 25.0%
! TGTACCATTTATACCAAAAT+GGG + chr2.4:21876961-21876980 MS.gene63379:CDS 25.0%
! TGTTGTATATAAACTACCAT+TGG + chr2.4:21877418-21877437 MS.gene63379:intron 25.0%
! TTGTACCATTTATACCAAAA+TGG + chr2.4:21876960-21876979 MS.gene63379:CDS 25.0%
! TTTATATGCATCAAACATGT+AGG + chr2.4:21877604-21877623 MS.gene63379:intron 25.0%
!! ACATTTTTCACAATATCATG+AGG + chr2.4:21878788-21878807 MS.gene63379:intron 25.0%
!! CTATTGTGATTATTGACTAA+AGG + chr2.4:21877517-21877536 MS.gene63379:intron 25.0%
!! GTTAGATTACTATTAACTTG+AGG + chr2.4:21878176-21878195 MS.gene63379:intron 25.0%
!! TAGATTACTATTAACTTGAG+GGG + chr2.4:21878178-21878197 MS.gene63379:intron 25.0%
!! TGAACTAGTCATAATTTTGA+TGG + chr2.4:21877237-21877256 MS.gene63379:intron 25.0%
!! TTGATCTTCTTTTCATAAGT+AGG + chr2.4:21877785-21877804 MS.gene63379:intron 25.0%
!!! AATACCCATTTTGGTATAAA+TGG - chr2.4:21876968-21876987 None:intergenic 25.0%
!!! ACATTTGTATTTGTTTTGGA+AGG + chr2.4:21878579-21878598 MS.gene63379:intron 25.0%
!!! AGGTAGGTAATATTTTGAAA+AGG + chr2.4:21878808-21878827 MS.gene63379:intron 25.0%
!!! CATCTTTAAAATACCCATTT+TGG - chr2.4:21876977-21876996 None:intergenic 25.0%
!!! GTAAATATAATTTGGTTTGC+AGG - chr2.4:21878844-21878863 None:intergenic 25.0%
AAAAAGGTTGTGAGAAAAGA+TGG + chr2.4:21876855-21876874 MS.gene63379:CDS 30.0%
AAAGTTCATAGTGTCCATTT+AGG - chr2.4:21877933-21877952 None:intergenic 30.0%
AAATGGACACTATGAACTTT+GGG + chr2.4:21877933-21877952 MS.gene63379:intron 30.0%
AAGTTCATAGTGTCCATTTA+GGG - chr2.4:21877932-21877951 None:intergenic 30.0%
ATGCAAGATTTAACATTGGT+TGG + chr2.4:21877015-21877034 MS.gene63379:CDS 30.0%
ATTTGGTATCTAAGAGTTAG+AGG - chr2.4:21878668-21878687 None:intergenic 30.0%
GAAACAAATAGATAAATGCG+GGG - chr2.4:21878217-21878236 None:intergenic 30.0%
GAAATTTAGGAAAAAGGTCA+TGG - chr2.4:21878481-21878500 None:intergenic 30.0%
GCTCATTTATTATCTTGAAC+TGG - chr2.4:21879226-21879245 None:intergenic 30.0%
GTAGGTTATGAAAGTTTACT+TGG + chr2.4:21877803-21877822 MS.gene63379:intron 30.0%
GTTCATGCAAGATTTAACAT+TGG + chr2.4:21877011-21877030 MS.gene63379:CDS 30.0%
TAAATGGACACTATGAACTT+TGG + chr2.4:21877932-21877951 MS.gene63379:intron 30.0%
TAGATTCATATGTGATGTGT+CGG + chr2.4:21878128-21878147 MS.gene63379:intron 30.0%
TGAATCTAACAACATCTCAA+AGG - chr2.4:21878116-21878135 None:intergenic 30.0%
TGAGCTGAAATTTAGGAAAA+AGG - chr2.4:21878487-21878506 None:intergenic 30.0%
TTAACATAACCCAAAGCATA+AGG - chr2.4:21877050-21877069 None:intergenic 30.0%
TTTCACATGAGCTGAAATTT+AGG - chr2.4:21878494-21878513 None:intergenic 30.0%
! AGCTATTTCAAGATTATCAC+TGG - chr2.4:21877093-21877112 None:intergenic 30.0%
! ATTGTTATTCCAAGTTCACA+AGG + chr2.4:21878001-21878020 MS.gene63379:intron 30.0%
! TTCCTGGGTAATATTACTTT+TGG - chr2.4:21879161-21879180 None:intergenic 30.0%
! TTTTCACAATATCATGAGGT+AGG + chr2.4:21878792-21878811 MS.gene63379:intron 30.0%
!! CTAAAGGGCATTTGAATAAA+AGG + chr2.4:21877533-21877552 MS.gene63379:intron 30.0%
!!! GTATTTGTTTTGGAAGGTTA+GGG + chr2.4:21878585-21878604 MS.gene63379:intron 30.0%
!!! TATTTGTTTTGGAAGGTTAG+GGG + chr2.4:21878586-21878605 MS.gene63379:intron 30.0%
!!! TGTATTTGTTTTGGAAGGTT+AGG + chr2.4:21878584-21878603 MS.gene63379:intron 30.0%
AATAATCACAATAGGGTGAC+CGG - chr2.4:21877511-21877530 None:intergenic 35.0%
AATGGACACTATGAACTTTG+GGG + chr2.4:21877934-21877953 MS.gene63379:intron 35.0%
AGCAAGTCCAGTTAAACTAT+TGG - chr2.4:21878526-21878545 None:intergenic 35.0%
AGGAACACCAATAGTTTAAC+TGG + chr2.4:21878516-21878535 MS.gene63379:intron 35.0%
AGGTTCCAGAAAATACAGTA+AGG + chr2.4:21879454-21879473 MS.gene63379:intron 35.0%
AGTTCATAGTGTCCATTTAG+GGG - chr2.4:21877931-21877950 None:intergenic 35.0%
ATATGCATCAAACATGTAGG+AGG + chr2.4:21877607-21877626 MS.gene63379:intron 35.0%
ATTTCAGCTCATGTGAAACT+AGG + chr2.4:21878496-21878515 MS.gene63379:intron 35.0%
CAACTCCATGCTAAATGATT+CGG - chr2.4:21879184-21879203 None:intergenic 35.0%
GAAGGAGCTTTCAATTGAAA+TGG + chr2.4:21876929-21876948 MS.gene63379:CDS 35.0%
GACCAAAAGTAATATTACCC+AGG + chr2.4:21879156-21879175 MS.gene63379:intron 35.0%
GATGAGATAGTATTTGGCAA+GGG + chr2.4:21878028-21878047 MS.gene63379:intron 35.0%
GGATTTGGAGATAACTATGA+AGG + chr2.4:21879638-21879657 MS.gene63379:CDS 35.0%
GTCAAATTTAGCTAGAGATC+TGG - chr2.4:21878630-21878649 None:intergenic 35.0%
GTGCGTAACATAATTGTCAT+TGG + chr2.4:21878417-21878436 MS.gene63379:intron 35.0%
GTTGTGAGAAAAGATGGTAA+GGG + chr2.4:21876861-21876880 MS.gene63379:CDS 35.0%
TAACAGAAGACTCGATTACA+TGG - chr2.4:21878160-21878179 None:intergenic 35.0%
TGATGAGATAGTATTTGGCA+AGG + chr2.4:21878027-21878046 MS.gene63379:intron 35.0%
TGGGTCTATGAACATTTCTA+TGG + chr2.4:21877561-21877580 MS.gene63379:intron 35.0%
TGGTGTAATCAGTGAGAAAA+AGG + chr2.4:21876839-21876858 MS.gene63379:CDS 35.0%
TTCCTGAAAAATTTGAGTGC+TGG + chr2.4:21878069-21878088 MS.gene63379:intron 35.0%
! GCTTAAAAGTATACGTACAG+TGG + chr2.4:21878970-21878989 MS.gene63379:intron 35.0%
! GGTTCTGATGAGATAGTATT+TGG + chr2.4:21878022-21878041 MS.gene63379:intron 35.0%
! GTATGCCTTACTGTATTTTC+TGG - chr2.4:21879462-21879481 None:intergenic 35.0%
! TGTATTGACGATCTTATTCG+AGG + chr2.4:21879268-21879287 MS.gene63379:intron 35.0%
! TTACGATTTCATTTTCCTCC+AGG + chr2.4:21879539-21879558 MS.gene63379:intron 35.0%
! TTTGAGACTCCTTATGCTTT+GGG + chr2.4:21877038-21877057 MS.gene63379:CDS 35.0%
!! ACGGTTTTGTCCTTTGTAAA+AGG + chr2.4:21877369-21877388 MS.gene63379:intron 35.0%
!!! AAGACTGCGGAAATTTTTTG+AGG + chr2.4:21879434-21879453 MS.gene63379:CDS 35.0%
AAAAGATGGTAAGGGAAAGG+TGG + chr2.4:21876869-21876888 MS.gene63379:CDS 40.0%
AATGACACTAACACATTGCC+AGG - chr2.4:21878455-21878474 None:intergenic 40.0%
ACAAATCAACCACTTCCTGA+TGG + chr2.4:21876819-21876838 MS.gene63379:CDS 40.0%
AGGAACCGAATCATTTAGCA+TGG + chr2.4:21879176-21879195 MS.gene63379:intron 40.0%
AGTATTTGGCAAGGGTTCAT+AGG + chr2.4:21878036-21878055 MS.gene63379:intron 40.0%
ATAAATGCGGGGTTGGATAA+AGG - chr2.4:21878206-21878225 None:intergenic 40.0%
CAAATAGATAAATGCGGGGT+TGG - chr2.4:21878213-21878232 None:intergenic 40.0%
CATGCATGCAAACACAACTT+TGG - chr2.4:21878942-21878961 None:intergenic 40.0%
CCTCGATTCTCAAGAAATGT+GGG + chr2.4:21877441-21877460 MS.gene63379:intron 40.0%
CTCAAGAAATGTGGGTCTTA+AGG + chr2.4:21877449-21877468 MS.gene63379:intron 40.0%
GAAAGCTCCTTCACAACAAA+TGG - chr2.4:21876921-21876940 None:intergenic 40.0%
GAGAAAAGATGGTAAGGGAA+AGG + chr2.4:21876866-21876885 MS.gene63379:CDS 40.0%
GGTTGTGAGAAAAGATGGTA+AGG + chr2.4:21876860-21876879 MS.gene63379:CDS 40.0%
GTTCATAGTGTCCATTTAGG+GGG - chr2.4:21877930-21877949 None:intergenic 40.0%
TACAAAGGACAAAACCGTGA+AGG - chr2.4:21877367-21877386 None:intergenic 40.0%
TCATCAGAACCTTGTGAACT+TGG - chr2.4:21878013-21878032 None:intergenic 40.0%
! CATGAACTTTGATTCGCAGA+TGG + chr2.4:21879334-21879353 MS.gene63379:intron 40.0%
! GACCAGCACTCAAATTTTTC+AGG - chr2.4:21878074-21878093 None:intergenic 40.0%
! GCATTTCTGTTTGATTGGTC+AGG + chr2.4:21877629-21877648 MS.gene63379:intron 40.0%
! GTTTGAGACTCCTTATGCTT+TGG + chr2.4:21877037-21877056 MS.gene63379:CDS 40.0%
! TAGGGGTACAAGAGTCTAAA+AGG + chr2.4:21878603-21878622 MS.gene63379:intron 40.0%
! TTCTCACTGATTACACCATC+AGG - chr2.4:21876837-21876856 None:intergenic 40.0%
!! ACAGTGAAGGTATTAGTGCA+TGG - chr2.4:21879484-21879503 None:intergenic 40.0%
!! AGGAGGCATTTCTGTTTGAT+TGG + chr2.4:21877624-21877643 MS.gene63379:intron 40.0%
!! ATGCTAAATGATTCGGTTCC+TGG - chr2.4:21879177-21879196 None:intergenic 40.0%
!! CATTGGTGTTTTACTCTTCC+TGG + chr2.4:21878434-21878453 MS.gene63379:intron 40.0%
!! GAGAGAACCATTTGTTGTGA+AGG + chr2.4:21876911-21876930 MS.gene63379:CDS 40.0%
!! TATTACTTTTGGTCCCAGCT+TGG - chr2.4:21879150-21879169 None:intergenic 40.0%
!! TCTGAGGTATTGACCACTTT+GGG + chr2.4:21877329-21877348 MS.gene63379:intron 40.0%
!! TGCTAAATGATTCGGTTCCT+GGG - chr2.4:21879176-21879195 None:intergenic 40.0%
!! TTCTGAGGTATTGACCACTT+TGG + chr2.4:21877328-21877347 MS.gene63379:intron 40.0%
AGAGGACTTGAATTGCGGTT+TGG + chr2.4:21877677-21877696 MS.gene63379:intron 45.0%
AGCAATGCATCCAACGTGTA+TGG - chr2.4:21879309-21879328 None:intergenic 45.0%
ATCGACGAAGACGAAGAATC+CGG + chr2.4:21876663-21876682 MS.gene63379:CDS 45.0%
ATGTGGGTCTTAAGGTGTAC+CGG + chr2.4:21877457-21877476 MS.gene63379:intron 45.0%
CCCACATTTCTTGAGAATCG+AGG - chr2.4:21877444-21877463 None:intergenic 45.0%
CTGATTACACCATCAGGAAG+TGG - chr2.4:21876831-21876850 None:intergenic 45.0%
CTGGGAGAAGAGTTCACATT+TGG - chr2.4:21877657-21877676 None:intergenic 45.0%
GAGTTCATTCCCATACACGT+TGG + chr2.4:21879296-21879315 MS.gene63379:intron 45.0%
GCAATGCATCCAACGTGTAT+GGG - chr2.4:21879308-21879327 None:intergenic 45.0%
GCATGCATTTACTGCAAACC+TGG - chr2.4:21879560-21879579 None:intergenic 45.0%
GCCTCGATTCTCAAGAAATG+TGG + chr2.4:21877440-21877459 MS.gene63379:intron 45.0%
GTATGCAAATGCCCCCTAAA+TGG + chr2.4:21877916-21877935 MS.gene63379:intron 45.0%
TGCATTTACTGCAAACCTGG+AGG - chr2.4:21879557-21879576 None:intergenic 45.0%
TTCTTGAGAATCGAGGCCAA+TGG - chr2.4:21877437-21877456 None:intergenic 45.0%
TTGAAGCAAGTGGCAGTGTT+TGG + chr2.4:21879372-21879391 MS.gene63379:CDS 45.0%
! AATTTCCGCAGTCTTTTCGC+AGG - chr2.4:21879429-21879448 None:intergenic 45.0%
! ATTTCCGCAGTCTTTTCGCA+GGG - chr2.4:21879428-21879447 None:intergenic 45.0%
! CGTCTCTTTTCTTCCAAGCT+GGG + chr2.4:21879134-21879153 MS.gene63379:intron 45.0%
! GCATGACTAATTTTCTGCCC+CGG + chr2.4:21878299-21878318 MS.gene63379:intron 45.0%
! TCGTCTCTTTTCTTCCAAGC+TGG + chr2.4:21879133-21879152 MS.gene63379:intron 45.0%
! TGGAAGTGCATTGAAGCAAG+TGG + chr2.4:21879362-21879381 MS.gene63379:CDS 45.0%
! TTCGTCTTCGTCGATTGTTG+TGG - chr2.4:21876658-21876677 None:intergenic 45.0%
! TTGATTCGCAGATGGCTATC+TGG + chr2.4:21879342-21879361 MS.gene63379:intron 45.0%
!! CAACGAGGTGCCTTTTACAA+AGG - chr2.4:21877382-21877401 None:intergenic 45.0%
!! CTTTGTAAAAGGCACCTCGT+TGG + chr2.4:21877380-21877399 MS.gene63379:intron 45.0%
ACATCATTCCTGCTGACCGA+GGG - chr2.4:21879402-21879421 None:intergenic 50.0%
ACCGCAATTCAAGTCCTCTC+TGG - chr2.4:21877676-21877695 None:intergenic 50.0%
ACCTCGTTGGATTGAGGAGT+TGG + chr2.4:21877393-21877412 MS.gene63379:intron 50.0%
CCCAGAGAGGACTTGAATTG+CGG + chr2.4:21877672-21877691 MS.gene63379:intron 50.0%
CCGCAATTCAAGTCCTCTCT+GGG - chr2.4:21877675-21877694 None:intergenic 50.0%
CCTCGTTGGATTGAGGAGTT+GGG + chr2.4:21877394-21877413 MS.gene63379:intron 50.0%
CTCGTTGGATTGAGGAGTTG+GGG + chr2.4:21877395-21877414 MS.gene63379:intron 50.0%
GAAGACGAAGAATCCGGTGT+CGG + chr2.4:21876669-21876688 MS.gene63379:CDS 50.0%
GTGGTCAATACCTCAGAACG+CGG - chr2.4:21877326-21877345 None:intergenic 50.0%
TCATCAGACACTACCAGCTG+AGG - chr2.4:21879696-21879715 None:intergenic 50.0%
TCTTCCCTGCGAAAAGACTG+CGG + chr2.4:21879421-21879440 MS.gene63379:CDS 50.0%
TGTGAACTCTTCTCCCAGAG+AGG + chr2.4:21877659-21877678 MS.gene63379:intron 50.0%
! TGTTACTTGGGCGGCCAATT+TGG + chr2.4:21878328-21878347 MS.gene63379:intron 50.0%
!! AAAGGCACCTCGTTGGATTG+AGG + chr2.4:21877387-21877406 MS.gene63379:intron 50.0%
CAATACCTCAGAACGCGGTG+TGG - chr2.4:21877321-21877340 None:intergenic 55.0%
CATCATTCCTGCTGACCGAG+GGG - chr2.4:21879401-21879420 None:intergenic 55.0%
CCCAACTCCTCAATCCAACG+AGG - chr2.4:21877397-21877416 None:intergenic 55.0%
CCCAAGTAACAAGCACACCG+GGG - chr2.4:21878319-21878338 None:intergenic 55.0%
CGCCCAAGTAACAAGCACAC+CGG - chr2.4:21878321-21878340 None:intergenic 55.0%
GACATCATTCCTGCTGACCG+AGG - chr2.4:21879403-21879422 None:intergenic 55.0%
GCCCAAGTAACAAGCACACC+GGG - chr2.4:21878320-21878339 None:intergenic 55.0%
GCTCACACAACGACCCAAAG+TGG - chr2.4:21877345-21877364 None:intergenic 55.0%
GGTCGTTGTGTGAGCCTTCA+CGG + chr2.4:21877350-21877369 MS.gene63379:intron 55.0%
TGGCGTACTTGAGGGTGGAA+TGG - chr2.4:21877301-21877320 None:intergenic 55.0%
TTGAGCTGACTACTGCAGCG+TGG - chr2.4:21877968-21877987 None:intergenic 55.0%
! ATTGCGGTTTGGCACGCTGT+TGG + chr2.4:21877688-21877707 MS.gene63379:intron 55.0%
! CCCCGGTGTGCTTGTTACTT+GGG + chr2.4:21878316-21878335 MS.gene63379:intron 55.0%
! CGGTGTGCTTGTTACTTGGG+CGG + chr2.4:21878319-21878338 MS.gene63379:intron 55.0%
!! ACACTTGGTGCATCCTCAGC+TGG + chr2.4:21879680-21879699 MS.gene63379:CDS 55.0%
AACGCGGTGTGGCGTACTTG+AGG - chr2.4:21877310-21877329 None:intergenic 60.0%
ACGCGGTGTGGCGTACTTGA+GGG - chr2.4:21877309-21877328 None:intergenic 60.0%
GGCAGTGTTTGGTTGCCCCT+CGG + chr2.4:21879383-21879402 MS.gene63379:CDS 60.0%
! GCCCCGGTGTGCTTGTTACT+TGG + chr2.4:21878315-21878334 MS.gene63379:intron 60.0%
CAGCTCGATGTCGCCGACAC+CGG - chr2.4:21876685-21876704 None:intergenic 65.0%
CGGTGTGGCGTACTTGAGGG+TGG - chr2.4:21877306-21877325 None:intergenic 65.0%
GTACGCCACACCGCGTTCTG+AGG + chr2.4:21877313-21877332 MS.gene63379:intron 65.0%
TTGGTTGCCCCTCGGTCAGC+AGG + chr2.4:21879391-21879410 MS.gene63379:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 21876642 21879776 21876642 ID=MS.gene63379
chr2.4 mRNA 21876642 21879776 21876642 ID=MS.gene63379.t1;Parent=MS.gene63379
chr2.4 exon 21876642 21877114 21876642 ID=MS.gene63379.t1.exon1;Parent=MS.gene63379.t1
chr2.4 CDS 21876642 21877114 21876642 ID=cds.MS.gene63379.t1;Parent=MS.gene63379.t1
chr2.4 exon 21879353 21879470 21879353 ID=MS.gene63379.t1.exon2;Parent=MS.gene63379.t1
chr2.4 CDS 21879353 21879470 21879353 ID=cds.MS.gene63379.t1;Parent=MS.gene63379.t1
chr2.4 exon 21879561 21879776 21879561 ID=MS.gene63379.t1.exon3;Parent=MS.gene63379.t1
chr2.4 CDS 21879561 21879776 21879561 ID=cds.MS.gene63379.t1;Parent=MS.gene63379.t1
Gene Sequence

>MS.gene63379

ATGTCAGACAAAACCACAACAATCGACGAAGACGAAGAATCCGGTGTCGGCGACATCGAGCTGAAGAAGAAACTAAAGCAGTTAACAGAAGAAGTTACAAACTTTAAGCAGAAAAAATCAAAAGGGGTTATTCCAAAGAAAGTTGAAATTGAAAAGAAGAGTTTATATTCTGCTTTTACAAATCAACCACTTCCTGATGGTGTAATCAGTGAGAAAAAGGTTGTGAGAAAAGATGGTAAGGGAAAGGTGGTAGAGAAGAAGCAGAAGATGAGAGAACCATTTGTTGTGAAGGAGCTTTCAATTGAAATGGCGATGTTTTTGTACCATTTATACCAAAATGGGTATTTTAAAGATGCTAAATTTGATCATGTTCATGCAAGATTTAACATTGGTTGGTTTGAGACTCCTTATGCTTTGGGTTATGTTAAGTTTGCTGCAAAGAAATTTGCCAGTGATAATCTTGAAATAGCTAAGTAAGTTGTGATTATGATGAGTTTTTTTTTGTCTATCTGCTCTTTTGTGTAGATTGAATTATTATGTTAGATTGTTGCATTTATATGTTTGATTTAGTGAGAATAACATTTTTAAGAAAATGTGAACTAGTCATAATTTTGATGGCATTGTGAAAGAGAAAAGTCATTTTCTTGTTTTGTGTTCCATTCCACCCTCAAGTACGCCACACCGCGTTCTGAGGTATTGACCACTTTGGGTCGTTGTGTGAGCCTTCACGGTTTTGTCCTTTGTAAAAGGCACCTCGTTGGATTGAGGAGTTGGGGTGTTGTATATAAACTACCATTGGCCTCGATTCTCAAGAAATGTGGGTCTTAAGGTGTACCGGAATATTTTGAAAATTTTAAAATATGAAACCGGTCACCCTATTGTGATTATTGACTAAAGGGCATTTGAATAAAAGGTTATTTGGGTCTATGAACATTTCTATGGTTTGAAAGAGCTTGTAAGATTTTATATGCATCAAACATGTAGGAGGCATTTCTGTTTGATTGGTCAGGCACCAAATGTGAACTCTTCTCCCAGAGAGGACTTGAATTGCGGTTTGGCACGCTGTTGGAGACTAGCTCATTCTACTAGACTCAATCTCGTTGTTTTATAAGAATAGCTTAATTCATGATCATAAGTTTTTTTTTGATCTTCTTTTCATAAGTAGGTTATGAAAGTTTACTTGGAGTTTGTTTCTTTAAATTTTGAGATTGTAGAAACATTAGATATAAATCTTATGTATAAGTGCTTATTTGATAAGTACTTGATTAAATTTAGTATGCAAATGCCCCCTAAATGGACACTATGAACTTTGGGGTGAATCTACCACGCTGCAGTAGTCAGCTCAAATAATTTAAGGATATTGTTATTCCAAGTTCACAAGGTTCTGATGAGATAGTATTTGGCAAGGGTTCATAGGATGTTTTCTATTCCTGAAAAATTTGAGTGCTGGTCTATGAAATATCTTCATAATCCTTTGAGATGTTGTTAGATTCATATGTGATGTGTCGGTGTTTTCCATGTAATCGAGTCTTCTGTTAGATTACTATTAACTTGAGGGGTGCCTTTATCCAACCCCGCATTTATCTATTTGTTTCTCATATTTTTGTCTATTTGTTTGCTTCATGTATCAAGTATGTTTACTAGTCGAGCTCGATTTGCATGACTAATTTTCTGCCCCGGTGTGCTTGTTACTTGGGCGGCCAATTTGGAAAATTTTGTTATTATCTTTCAATATCAGTTTCCTTTAATTATACGATATGGTTGTCGACAATTAAGTGCGTAACATAATTGTCATTGGTGTTTTACTCTTCCTGGCAATGTGTTAGTGTCATTGTGCCATGACCTTTTTCCTAAATTTCAGCTCATGTGAAACTAGGAACACCAATAGTTTAACTGGACTTGCTAGAATTTTAAGATTATTAGTTTCTTTAACTTTCACATTTGTATTTGTTTTGGAAGGTTAGGGGTACAAGAGTCTAAAAGGACCAGATCTCTAGCTAAATTTGACAAAACTCTATTCTTGCCTCTAACTCTTAGATACCAAATAATCAAAAATTATGTTTATTATGATAGTTGTTACTAGTTAGTATCATAAATATCGGTTATTTTGCTCAAAAGCATATATTTACATATTGAAGTCTATTTCACATTTTTCACAATATCATGAGGTAGGTAATATTTTGAAAAGGAGAAGACAATCCTGCAAACCAAATTATATTTACCTTTTAACTTTTGATAGTTAGCACTTAGTATTTTTTTATTTTTATTTTTTTTAAAAAGTTAGCACTTAGTAATAACCAAAGTTGTGTTTGCATGCATGATCTTCTTGCTTAAAAGTATACGTACAGTGGAGTAGTTTATGTTTTGTTTGATTAGTGGTGCTAAAATCACTTTAGATCTTGTAAATCTCAAAAGGAATGAGTTCCCTCTTGCATTATATTGTAAATAATTGATGTTAAAAACACTTCTGCTTGAAAAGAAATCTGAACTTTCGTCTCTTTTCTTCCAAGCTGGGACCAAAAGTAATATTACCCAGGAACCGAATCATTTAGCATGGAGTTGTTGTGACATGTAAATATTGCCAGTTCAAGATAATAAATGAGCATATAATATTAGGATCTTGTTTTGTATTGACGATCTTATTCGAGGATTGTGAGTTCATTCCCATACACGTTGGATGCATTGCTTATAACATGAACTTTGATTCGCAGATGGCTATCTGGAAGTGCATTGAAGCAAGTGGCAGTGTTTGGTTGCCCCTCGGTCAGCAGGAATGATGTCTTCCCTGCGAAAAGACTGCGGAAATTTTTTGAGGTTCCAGAAAATACAGTAAGGCATACCATGCACTAATACCTTCACTGTATTTTCTAACTTATTTATGCATGCATCTATGTTGTTTACGATTTCATTTTCCTCCAGGTTTGCAGTAAATGCATGCTGCGAGAATCATGCAAATTTGTGAATCAAGATGTTTGGAAATGTGATACCAATAAATTGGATTTGGAGATAACTATGAAGGTTACTATTTCATATGCTTTACACTTGGTGCATCCTCAGCTGGTAGTGTCTGATGAAGTCAACAAATCAGTCAATCATTTACTGAATGAGTTTGTGAAACTAAGTCAAATCACCTGA
Protein sequence

>MS.gene63379.t1

MSDKTTTIDEDEESGVGDIELKKKLKQLTEEVTNFKQKKSKGVIPKKVEIEKKSLYSAFTNQPLPDGVISEKKVVRKDGKGKVVEKKQKMREPFVVKELSIEMAMFLYHLYQNGYFKDAKFDHVHARFNIGWFETPYALGYVKFAAKKFASDNLEIAKWLSGSALKQVAVFGCPSVSRNDVFPAKRLRKFFEVPENTVCSKCMLRESCKFVNQDVWKCDTNKLDLEITMKVTISYALHLVHPQLVVSDEVNKSVNHLLNEFVKLSQIT