AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057314


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057314.t1 MTR_3g070120 83.465 381 29 2 1 351 1 377 0.0 542
MS.gene057314.t1 MTR_2g010790 36.825 315 155 14 44 336 113 405 7.47e-36 135
MS.gene057314.t1 MTR_1g081580 35.294 119 73 2 98 213 73 190 2.38e-14 73.9
MS.gene057314.t1 MTR_7g114600 33.036 112 67 2 123 226 111 222 4.14e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057314.t1 AT4G00390 37.143 210 103 8 32 231 71 261 2.87e-26 107
MS.gene057314.t1 AT4G25210 34.824 313 164 13 56 347 75 368 3.19e-26 107
MS.gene057314.t1 AT1G11510 36.683 199 113 4 32 223 46 238 6.32e-26 106
MS.gene057314.t1 AT1G61730 35.266 207 102 6 32 221 63 254 4.76e-25 104
MS.gene057314.t1 AT1G11510 36.410 195 90 6 32 223 46 209 3.52e-22 95.9
MS.gene057314.t1 AT4G01260 35.135 185 99 6 46 218 33 208 1.62e-20 91.3
MS.gene057314.t1 AT4G00250 33.929 168 87 4 75 237 81 229 3.92e-19 87.0
MS.gene057314.t1 AT2G25650 30.769 156 100 2 125 277 67 217 4.47e-16 79.0
MS.gene057314.t1 AT4G00238 34.234 111 73 0 75 185 92 202 7.68e-15 75.1
MS.gene057314.t1 AT5G14280 41.748 103 55 2 116 213 52 154 1.01e-14 74.3
MS.gene057314.t1 AT1G66420 30.882 136 90 1 79 214 43 174 2.13e-14 73.2
MS.gene057314.t1 AT1G44810 32.544 169 85 6 47 214 70 210 4.54e-14 72.4
MS.gene057314.t1 AT4G00270 33.929 112 71 1 125 233 66 177 3.38e-13 69.7
MS.gene057314.t1 AT2G01370 35.714 98 62 1 117 213 74 171 6.31e-13 68.2
MS.gene057314.t1 AT5G28040 30.387 181 101 8 68 234 79 248 7.32e-12 66.6
MS.gene057314.t1 AT5G28040 30.387 181 101 8 68 234 79 248 7.32e-12 66.6
MS.gene057314.t1 AT3G04930 35.577 104 57 5 123 218 138 239 1.77e-11 65.5
MS.gene057314.t1 AT3G04930 35.714 98 54 4 123 213 138 233 2.29e-11 65.1
MS.gene057314.t1 AT4G00610 30.935 139 80 5 76 213 110 233 1.00e-10 62.8

Find 86 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGAATGGGAAAGTTAA+TGG 0.265828 3.1:-57496870 MS.gene057314:CDS
GGAGGATACTGGTTTGAGTT+TGG 0.293728 3.1:-57496715 MS.gene057314:CDS
TTGAGCTTTCGAAGAAGATT+TGG 0.299730 3.1:-57496923 MS.gene057314:CDS
GTTGATTTCACTGCCAAATC+AGG 0.313777 3.1:-57497122 MS.gene057314:CDS
TGAGCTTTCGAAGAAGATTT+GGG 0.331143 3.1:-57496922 MS.gene057314:CDS
TAGGGTTTGTTCAATGGGTT+TGG 0.338716 3.1:+57497364 None:intergenic
AGCGAGGACAACTAAGAAAT+TGG 0.352971 3.1:-57496805 MS.gene057314:CDS
AGTAGGATCATTCCCTGATT+TGG 0.362230 3.1:+57497109 None:intergenic
AGCAGCCGGTTCCTTCTTCC+CGG 0.367777 3.1:+57496842 None:intergenic
GGCAGGTGGTATGGAGGGTT+TGG 0.368058 3.1:+57497331 None:intergenic
AAAACCACCAATGGTGAATC+AGG 0.369727 3.1:+57496774 None:intergenic
TCCATACCACCTGCCAGATC+TGG 0.378422 3.1:-57497323 MS.gene057314:CDS
AGGACGTTTGGTTCCAGATC+TGG 0.379033 3.1:+57497310 None:intergenic
ATCAATTGCGCGATAAGGTT+CGG 0.379484 3.1:-57497025 MS.gene057314:CDS
TATCTTGGTAGCTGTTTCCT+TGG 0.379523 3.1:+57496539 None:intergenic
GAATTCATCATCAAGCCATT+AGG 0.384003 3.1:-57496505 None:intergenic
TCCAGATCTGGCAGGTGGTA+TGG 0.387320 3.1:+57497322 None:intergenic
GTCTTTGACGGCGGCGGTGG+CGG 0.397838 3.1:+57497634 None:intergenic
GCTTGATCAATTGCGCGATA+AGG 0.398297 3.1:-57497030 MS.gene057314:CDS
TAAGTACAGAATTGCTGAAA+TGG 0.398880 3.1:-57496589 MS.gene057314:CDS
CTCTTCACCACATCTATAAC+CGG 0.406554 3.1:+57496666 None:intergenic
CGGTGGTGGGTCGTCTTTGA+CGG 0.412587 3.1:+57497622 None:intergenic
CTTCTTCTTGTTCTTCTCCT+CGG 0.418262 3.1:+57497244 None:intergenic
ATTCAATGCATCCCTTATCT+TGG 0.427946 3.1:+57496524 None:intergenic
GCGGCTGCTTTCTTAGCAGC+CGG 0.430843 3.1:+57496828 None:intergenic
GATGAGGTTGCAATTCTTCA+AGG 0.431860 3.1:-57497149 MS.gene057314:CDS
GGAATCAAAGAAAGGTGAAC+TGG 0.432469 3.1:-57496625 MS.gene057314:CDS
GTCGTCTTTGACGGCGGCGG+TGG 0.432622 3.1:+57497631 None:intergenic
TTGTTATTGTCATCCTCCTC+CGG 0.454682 3.1:+57497212 None:intergenic
AAGAGAATGGGAAAGTTAAT+GGG 0.461323 3.1:-57496869 MS.gene057314:CDS
ATTGAACAAACCCTAAAATC+AGG 0.464800 3.1:-57497356 MS.gene057314:CDS
AGGAAGGTGGACCGTGGTAA+TGG 0.469415 3.1:-57496741 MS.gene057314:CDS
GGTAATGGAAAGGAGGATAC+TGG 0.473524 3.1:-57496726 MS.gene057314:CDS
GAAGGCCGGGAAGAAGGAAC+CGG 0.476484 3.1:-57496847 MS.gene057314:CDS
GAGGGGAGTGGAGTCGATTG+AGG 0.478536 3.1:-57496646 MS.gene057314:CDS
CTCCTCTACCGGCTTCGAAA+AGG 0.495702 3.1:+57496953 None:intergenic
AGGAAACAGCTACCAAGATA+AGG 0.497731 3.1:-57496536 MS.gene057314:CDS
GCGATAAGGTTCGGAGGTTG+AGG 0.498254 3.1:-57497016 MS.gene057314:CDS
AAAGCCGATAGATGCTTAGT+AGG 0.500619 3.1:+57497092 None:intergenic
TCAAACATTGTCTCCTCTAC+CGG 0.506681 3.1:+57496942 None:intergenic
TGGTGGGTCGTCTTTGACGG+CGG 0.508266 3.1:+57497625 None:intergenic
CGAGGAGAAGAACAAGAAGA+AGG 0.508520 3.1:-57497243 MS.gene057314:CDS
TTTGAGAATAAATGTAAGAG+TGG 0.508621 3.1:-57496987 MS.gene057314:CDS
CAAGAAGAAGGAGAAAGAGC+CGG 0.511218 3.1:-57497231 MS.gene057314:CDS
GGAAACAGCTACCAAGATAA+GGG 0.512895 3.1:-57496535 MS.gene057314:CDS
TCGAAGAAGATTTGGGGTGG+TGG 0.514670 3.1:-57496915 MS.gene057314:CDS
GGGAAAGTTAATGGGAAGGC+CGG 0.514683 3.1:-57496861 MS.gene057314:CDS
TTAATGAAGGTGAAGAGAAT+GGG 0.515992 3.1:-57496881 MS.gene057314:CDS
TAATGGGAAGGCCGGGAAGA+AGG 0.516314 3.1:-57496853 MS.gene057314:CDS
GGTTATAGATGTGGTGAAGA+GGG 0.520148 3.1:-57496664 MS.gene057314:CDS
AGATGTGGTGAAGAGGGGAG+TGG 0.520696 3.1:-57496658 MS.gene057314:CDS
GTTAATGAAGGTGAAGAGAA+TGG 0.522303 3.1:-57496882 MS.gene057314:CDS
GGAGCCTGATTCACCATTGG+TGG 0.527617 3.1:-57496778 MS.gene057314:CDS
AGATCTGGCAGGTGGTATGG+AGG 0.532827 3.1:+57497325 None:intergenic
GAAGGAGAAAGAGCCGGAGG+AGG 0.534312 3.1:-57497225 MS.gene057314:CDS
TTGATTTCACTGCCAAATCA+GGG 0.541120 3.1:-57497121 MS.gene057314:CDS
TGGGTCGTCTTTGACGGCGG+CGG 0.548251 3.1:+57497628 None:intergenic
CGGTTATAGATGTGGTGAAG+AGG 0.554197 3.1:-57496665 MS.gene057314:CDS
TTGAGAATAAATGTAAGAGT+GGG 0.554852 3.1:-57496986 MS.gene057314:CDS
TGATCCTACTAAGCATCTAT+CGG 0.559423 3.1:-57497096 MS.gene057314:CDS
ATGAGGTTGCAATTCTTCAA+GGG 0.562519 3.1:-57497148 MS.gene057314:CDS
GACAACTAAGAAATTGGTGA+TGG 0.569729 3.1:-57496799 MS.gene057314:CDS
GATCTGGCAGGTGGTATGGA+GGG 0.572933 3.1:+57497326 None:intergenic
GTTTATGCAGAAAACTGAGT+TGG 0.577817 3.1:-57496562 MS.gene057314:CDS
GAAGAAACTTCATCAGAAGC+AGG 0.578349 3.1:-57497563 MS.gene057314:intron
GATGGAGCCTGATTCACCAT+TGG 0.580880 3.1:-57496781 MS.gene057314:CDS
GAAGAAGGAGAAAGAGCCGG+AGG 0.582776 3.1:-57497228 MS.gene057314:CDS
GGAAAGTTAATGGGAAGGCC+GGG 0.583565 3.1:-57496860 MS.gene057314:CDS
TCGATTGAGGAATCAAAGAA+AGG 0.588271 3.1:-57496633 MS.gene057314:CDS
CGTTTGGTTCCAGATCTGGC+AGG 0.590921 3.1:+57497314 None:intergenic
CTTTCGAAGAAGATTTGGGG+TGG 0.593102 3.1:-57496918 MS.gene057314:CDS
GGTAAAGTTGATGTTAATGA+AGG 0.597345 3.1:-57496894 MS.gene057314:CDS
GCAGAAAACTGAGTTGGCCA+AGG 0.609428 3.1:-57496556 MS.gene057314:CDS
GTTATAGATGTGGTGAAGAG+GGG 0.624491 3.1:-57496663 MS.gene057314:CDS
CTAAGAAAGCAGCCGCAGCG+AGG 0.632166 3.1:-57496821 MS.gene057314:CDS
TTGGTTCCAGATCTGGCAGG+TGG 0.633072 3.1:+57497317 None:intergenic
GGTGGACCGTGGTAATGGAA+AGG 0.637313 3.1:-57496736 MS.gene057314:CDS
TATCCTCCTTTCCATTACCA+CGG 0.639577 3.1:+57496730 None:intergenic
GAGCTTTCGAAGAAGATTTG+GGG 0.640229 3.1:-57496921 MS.gene057314:CDS
GAATGGGAAAGTTAATGGGA+AGG 0.645155 3.1:-57496865 MS.gene057314:CDS
TTTGAAGGAAAATAGGAAGG+TGG 0.647969 3.1:-57496754 MS.gene057314:CDS
GGACCGTGGTAATGGAAAGG+AGG 0.655825 3.1:-57496733 MS.gene057314:CDS
TTTCTTAGTTGTCCTCGCTG+CGG 0.659586 3.1:+57496809 None:intergenic
AATTGCGCGATAAGGTTCGG+AGG 0.671494 3.1:-57497022 MS.gene057314:CDS
TCTACCGGCTTCGAAAAGGT+AGG 0.695810 3.1:+57496957 None:intergenic
GAAAATAGGAAGGTGGACCG+TGG 0.713258 3.1:-57496747 MS.gene057314:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTGAGAATAAATGTAAGAGT+GGG - chr3.1:57497170-57497189 MS.gene057314:CDS 25.0%
! TTTGAGAATAAATGTAAGAG+TGG - chr3.1:57497169-57497188 MS.gene057314:CDS 25.0%
AAGAGAATGGGAAAGTTAAT+GGG - chr3.1:57497287-57497306 MS.gene057314:CDS 30.0%
ATTGAACAAACCCTAAAATC+AGG - chr3.1:57496800-57496819 MS.gene057314:CDS 30.0%
GAATAAAAAGAAAACAACCG+AGG - chr3.1:57496895-57496914 MS.gene057314:CDS 30.0%
TAAGTACAGAATTGCTGAAA+TGG - chr3.1:57497567-57497586 MS.gene057314:CDS 30.0%
TTAATGAAGGTGAAGAGAAT+GGG - chr3.1:57497275-57497294 MS.gene057314:CDS 30.0%
! TGAAATGATTCATTTTGAGC+CGG - chr3.1:57497471-57497490 MS.gene057314:intron 30.0%
!! GGTAAAGTTGATGTTAATGA+AGG - chr3.1:57497262-57497281 MS.gene057314:CDS 30.0%
!! TGGATTTTGATCTTCTTCTT+CGG + chr3.1:57496657-57496676 None:intergenic 30.0%
!!! GAACTGACTTTTTCACAATT+TGG + chr3.1:57497093-57497112 None:intergenic 30.0%
!!! GATTTTAGGGTTTGTTCAAT+GGG + chr3.1:57496800-57496819 None:intergenic 30.0%
!!! TGATTTTAGGGTTTGTTCAA+TGG + chr3.1:57496801-57496820 None:intergenic 30.0%
ATCTTCTGCTGAATTGTTCT+TGG + chr3.1:57496714-57496733 None:intergenic 35.0%
ATGAGGTTGCAATTCTTCAA+GGG - chr3.1:57497008-57497027 MS.gene057314:CDS 35.0%
ATTCAATGCATCCCTTATCT+TGG + chr3.1:57497635-57497654 None:intergenic 35.0%
GAAGAGAATGGGAAAGTTAA+TGG - chr3.1:57497286-57497305 MS.gene057314:CDS 35.0%
GACAACTAAGAAATTGGTGA+TGG - chr3.1:57497357-57497376 MS.gene057314:CDS 35.0%
GTTAATGAAGGTGAAGAGAA+TGG - chr3.1:57497274-57497293 MS.gene057314:CDS 35.0%
GTTTATGCAGAAAACTGAGT+TGG - chr3.1:57497594-57497613 MS.gene057314:CDS 35.0%
TCGATTGAGGAATCAAAGAA+AGG - chr3.1:57497523-57497542 MS.gene057314:intron 35.0%
TCTTCTGCTGAATTGTTCTT+GGG + chr3.1:57496713-57496732 None:intergenic 35.0%
TGAGCTTTCGAAGAAGATTT+GGG - chr3.1:57497234-57497253 MS.gene057314:CDS 35.0%
TGATCCTACTAAGCATCTAT+CGG - chr3.1:57497060-57497079 MS.gene057314:CDS 35.0%
TTGAGCTTTCGAAGAAGATT+TGG - chr3.1:57497233-57497252 MS.gene057314:CDS 35.0%
TTGATTTCACTGCCAAATCA+GGG - chr3.1:57497035-57497054 MS.gene057314:CDS 35.0%
TTTGAAGGAAAATAGGAAGG+TGG - chr3.1:57497402-57497421 MS.gene057314:CDS 35.0%
! TGTTCGATTTTGTCTTCTTG+CGG + chr3.1:57496557-57496576 None:intergenic 35.0%
! TTTTCCTTCAAAACCACCAA+TGG + chr3.1:57497394-57497413 None:intergenic 35.0%
!!! GGTTTTGAAGGAAAATAGGA+AGG - chr3.1:57497399-57497418 MS.gene057314:CDS 35.0%
!!! TGGTGGTTTTGAAGGAAAAT+AGG - chr3.1:57497395-57497414 MS.gene057314:CDS 35.0%
!!! TGTTCAATGGGTTTGGTTTT+TGG + chr3.1:57496788-57496807 None:intergenic 35.0%
AAAACCACCAATGGTGAATC+AGG + chr3.1:57497385-57497404 None:intergenic 40.0%
AAAGCCGATAGATGCTTAGT+AGG + chr3.1:57497067-57497086 None:intergenic 40.0%
AGCGAGGACAACTAAGAAAT+TGG - chr3.1:57497351-57497370 MS.gene057314:CDS 40.0%
AGGAAACAGCTACCAAGATA+AGG - chr3.1:57497620-57497639 MS.gene057314:CDS 40.0%
AGTAGGATCATTCCCTGATT+TGG + chr3.1:57497050-57497069 None:intergenic 40.0%
ATCAATTGCGCGATAAGGTT+CGG - chr3.1:57497131-57497150 MS.gene057314:CDS 40.0%
CTCTTCACCACATCTATAAC+CGG + chr3.1:57497493-57497512 None:intergenic 40.0%
CTTCTGCTGAATTGTTCTTG+GGG + chr3.1:57496712-57496731 None:intergenic 40.0%
CTTCTTCTTGTTCTTCTCCT+CGG + chr3.1:57496915-57496934 None:intergenic 40.0%
GAAGAAACTTCATCAGAAGC+AGG - chr3.1:57496593-57496612 MS.gene057314:CDS 40.0%
GAATGGGAAAGTTAATGGGA+AGG - chr3.1:57497291-57497310 MS.gene057314:CDS 40.0%
GAGCTTTCGAAGAAGATTTG+GGG - chr3.1:57497235-57497254 MS.gene057314:CDS 40.0%
GATGAGGTTGCAATTCTTCA+AGG - chr3.1:57497007-57497026 MS.gene057314:CDS 40.0%
GGAAACAGCTACCAAGATAA+GGG - chr3.1:57497621-57497640 MS.gene057314:CDS 40.0%
GGAATCAAAGAAAGGTGAAC+TGG - chr3.1:57497531-57497550 MS.gene057314:intron 40.0%
GGTTATAGATGTGGTGAAGA+GGG - chr3.1:57497492-57497511 MS.gene057314:intron 40.0%
GTTATAGATGTGGTGAAGAG+GGG - chr3.1:57497493-57497512 MS.gene057314:intron 40.0%
TATCCTCCTTTCCATTACCA+CGG + chr3.1:57497429-57497448 None:intergenic 40.0%
TCAAACATTGTCTCCTCTAC+CGG + chr3.1:57497217-57497236 None:intergenic 40.0%
! GTCGTTTCAGAGAGTTTTCA+CGG - chr3.1:57496979-57496998 MS.gene057314:CDS 40.0%
! GTTGATTTCACTGCCAAATC+AGG - chr3.1:57497034-57497053 MS.gene057314:CDS 40.0%
! TAGGGTTTGTTCAATGGGTT+TGG + chr3.1:57496795-57496814 None:intergenic 40.0%
! TATCTTGGTAGCTGTTTCCT+TGG + chr3.1:57497620-57497639 None:intergenic 40.0%
! TTGTTATTGTCATCCTCCTC+CGG + chr3.1:57496947-57496966 None:intergenic 40.0%
! TTTTGAGCCGGTTATAGATG+TGG - chr3.1:57497483-57497502 MS.gene057314:intron 40.0%
!! AGGGTTTGGTTCCTGATTTT+AGG + chr3.1:57496814-57496833 None:intergenic 40.0%
!! GGGTTTGGTTCCTGATTTTA+GGG + chr3.1:57496813-57496832 None:intergenic 40.0%
!!! TCAATGGGTTTGGTTTTTGG+AGG + chr3.1:57496785-57496804 None:intergenic 40.0%
!!! TTCACCATTGGTGGTTTTGA+AGG - chr3.1:57497387-57497406 MS.gene057314:CDS 40.0%
!!! TTGTTCTTGGGGTTGGTTTT+CGG + chr3.1:57496701-57496720 None:intergenic 40.0%
CAAGAAGAAGGAGAAAGAGC+CGG - chr3.1:57496925-57496944 MS.gene057314:CDS 45.0%
CGAGGAGAAGAACAAGAAGA+AGG - chr3.1:57496913-57496932 MS.gene057314:CDS 45.0%
CGGTTATAGATGTGGTGAAG+AGG - chr3.1:57497491-57497510 MS.gene057314:intron 45.0%
CTTTCGAAGAAGATTTGGGG+TGG - chr3.1:57497238-57497257 MS.gene057314:CDS 45.0%
GAAGCAGGTTCTTCATCTGA+AGG - chr3.1:57496608-57496627 MS.gene057314:CDS 45.0%
GCTTGATCAATTGCGCGATA+AGG - chr3.1:57497126-57497145 MS.gene057314:CDS 45.0%
TGCTGAATTGTTCTTGGGGT+TGG + chr3.1:57496708-57496727 None:intergenic 45.0%
TTTCTTAGTTGTCCTCGCTG+CGG + chr3.1:57497350-57497369 None:intergenic 45.0%
! AGTTTTCACGGAGGATGATG+AGG - chr3.1:57496991-57497010 MS.gene057314:CDS 45.0%
! ATTTTGTCTTCTTGCGGTGG+TGG + chr3.1:57496551-57496570 None:intergenic 45.0%
! GTTTCAGAGAGTTTTCACGG+AGG - chr3.1:57496982-57497001 MS.gene057314:CDS 45.0%
! TCGATTTTGTCTTCTTGCGG+TGG + chr3.1:57496554-57496573 None:intergenic 45.0%
! TTTTGTCTTCTTGCGGTGGT+GGG + chr3.1:57496550-57496569 None:intergenic 45.0%
!! GGAGGATACTGGTTTGAGTT+TGG - chr3.1:57497441-57497460 MS.gene057314:intron 45.0%
!! GGTAATGGAAAGGAGGATAC+TGG - chr3.1:57497430-57497449 MS.gene057314:CDS 45.0%
!! GTTGTTTTCAGCAGGACGTT+TGG + chr3.1:57496861-57496880 None:intergenic 45.0%
!! TTCGGAGGTGGAGTTGTTTT+TGG + chr3.1:57496683-57496702 None:intergenic 45.0%
!!! ATGGGTTTGGTTTTTGGAGG+AGG + chr3.1:57496782-57496801 None:intergenic 45.0%
AATTGCGCGATAAGGTTCGG+AGG - chr3.1:57497134-57497153 MS.gene057314:CDS 50.0%
GAAAATAGGAAGGTGGACCG+TGG - chr3.1:57497409-57497428 MS.gene057314:CDS 50.0%
GATGGAGCCTGATTCACCAT+TGG - chr3.1:57497375-57497394 MS.gene057314:CDS 50.0%
GCAGGTTCTTCATCTGAAGG+AGG - chr3.1:57496611-57496630 MS.gene057314:CDS 50.0%
GGAAAGTTAATGGGAAGGCC+GGG - chr3.1:57497296-57497315 MS.gene057314:CDS 50.0%
GGGAAAGTTAATGGGAAGGC+CGG - chr3.1:57497295-57497314 MS.gene057314:CDS 50.0%
! AGGACGTTTGGTTCCAGATC+TGG + chr3.1:57496849-57496868 None:intergenic 50.0%
! GACTCCTACCTTTTCGAAGC+CGG - chr3.1:57497195-57497214 MS.gene057314:CDS 50.0%
! GCAGAAAACTGAGTTGGCCA+AGG - chr3.1:57497600-57497619 MS.gene057314:CDS 50.0%
! TACCTTTTCGAAGCCGGTAG+AGG - chr3.1:57497201-57497220 MS.gene057314:CDS 50.0%
! TCGAAGAAGATTTGGGGTGG+TGG - chr3.1:57497241-57497260 MS.gene057314:CDS 50.0%
!! TCTACCGGCTTCGAAAAGGT+AGG + chr3.1:57497202-57497221 None:intergenic 50.0%
!! TTCGCGTCGTTGTTTTCAGC+AGG + chr3.1:57496869-57496888 None:intergenic 50.0%
!!! GGAGGTGGAGTTGTTTTTGG+AGG + chr3.1:57496680-57496699 None:intergenic 50.0%
!!! GGTGGAGTTGTTTTTGGAGG+TGG + chr3.1:57496677-57496696 None:intergenic 50.0%
!!! TTCTTGGGGTTGGTTTTCGG+AGG + chr3.1:57496698-57496717 None:intergenic 50.0%
AGATCTGGCAGGTGGTATGG+AGG + chr3.1:57496834-57496853 None:intergenic 55.0%
AGATGTGGTGAAGAGGGGAG+TGG - chr3.1:57497498-57497517 MS.gene057314:intron 55.0%
AGGAAGGTGGACCGTGGTAA+TGG - chr3.1:57497415-57497434 MS.gene057314:CDS 55.0%
GAAGAAGGAGAAAGAGCCGG+AGG - chr3.1:57496928-57496947 MS.gene057314:CDS 55.0%
GATCTGGCAGGTGGTATGGA+GGG + chr3.1:57496833-57496852 None:intergenic 55.0%
GCGATAAGGTTCGGAGGTTG+AGG - chr3.1:57497140-57497159 MS.gene057314:CDS 55.0%
GGAGCCTGATTCACCATTGG+TGG - chr3.1:57497378-57497397 MS.gene057314:CDS 55.0%
TAATGGGAAGGCCGGGAAGA+AGG - chr3.1:57497303-57497322 MS.gene057314:CDS 55.0%
TCCAGATCTGGCAGGTGGTA+TGG + chr3.1:57496837-57496856 None:intergenic 55.0%
TCCATACCACCTGCCAGATC+TGG - chr3.1:57496833-57496852 MS.gene057314:CDS 55.0%
TTGGTTCCAGATCTGGCAGG+TGG + chr3.1:57496842-57496861 None:intergenic 55.0%
! CGTTTGGTTCCAGATCTGGC+AGG + chr3.1:57496845-57496864 None:intergenic 55.0%
!! CTCCTCTACCGGCTTCGAAA+AGG + chr3.1:57497206-57497225 None:intergenic 55.0%
!! GGACCGTGGTAATGGAAAGG+AGG - chr3.1:57497423-57497442 MS.gene057314:CDS 55.0%
!! GGTGGACCGTGGTAATGGAA+AGG - chr3.1:57497420-57497439 MS.gene057314:CDS 55.0%
!!! TTGGGGTTGGTTTTCGGAGG+TGG + chr3.1:57496695-57496714 None:intergenic 55.0%
CTAAGAAAGCAGCCGCAGCG+AGG - chr3.1:57497335-57497354 MS.gene057314:CDS 60.0%
GAAGGAGAAAGAGCCGGAGG+AGG - chr3.1:57496931-57496950 MS.gene057314:CDS 60.0%
GAAGGCCGGGAAGAAGGAAC+CGG - chr3.1:57497309-57497328 MS.gene057314:CDS 60.0%
GAGGGGAGTGGAGTCGATTG+AGG - chr3.1:57497510-57497529 MS.gene057314:intron 60.0%
GGCAGGTGGTATGGAGGGTT+TGG + chr3.1:57496828-57496847 None:intergenic 60.0%
! AGCAGCCGGTTCCTTCTTCC+CGG + chr3.1:57497317-57497336 None:intergenic 60.0%
! GCGGCTGCTTTCTTAGCAGC+CGG + chr3.1:57497331-57497350 None:intergenic 60.0%
! TGGTGGGTCGTCTTTGACGG+CGG + chr3.1:57496534-57496553 None:intergenic 60.0%
!! CGGTGGTGGGTCGTCTTTGA+CGG + chr3.1:57496537-57496556 None:intergenic 60.0%
TGGGTCGTCTTTGACGGCGG+CGG + chr3.1:57496531-57496550 None:intergenic 65.0%
GTCGTCTTTGACGGCGGCGG+TGG + chr3.1:57496528-57496547 None:intergenic 70.0%
GTCTTTGACGGCGGCGGTGG+CGG + chr3.1:57496525-57496544 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 57496506 57497672 57496506 ID=MS.gene057314
chr3.1 mRNA 57496506 57497672 57496506 ID=MS.gene057314.t1;Parent=MS.gene057314
chr3.1 exon 57497564 57497672 57497564 ID=MS.gene057314.t1.exon1;Parent=MS.gene057314.t1
chr3.1 CDS 57497564 57497672 57497564 ID=cds.MS.gene057314.t1;Parent=MS.gene057314.t1
chr3.1 exon 57496506 57497452 57496506 ID=MS.gene057314.t1.exon2;Parent=MS.gene057314.t1
chr3.1 CDS 57496506 57497452 57496506 ID=cds.MS.gene057314.t1;Parent=MS.gene057314.t1
Gene Sequence

>MS.gene057314

ATGGCAAAGAAAAACTCCGCCACCGCCGCCGTCAAAGACGACCCACCACCGCAAGAAGACAAAATCGAACAACAAGATGAAAACGACGAAGAAACTTCATCAGAAGCAGGTTCTTCATCTGAAGGAGGCGAAGAAGAAGAAGAATCATCCGAAGAAGAAGATCAAAATCCACCTCCAAAAACAACTCCACCTCCGAAAACCAACCCCAAGAACAATTCAGCAGAAGATGATGAAGATGAAGACGAAGAAGAAACTGATACTGATGAAGACGAACCTCCTCCAAAAACCAAACCCATTGAACAAACCCTAAAATCAGGAACCAAACCCTCCATACCACCTGCCAGATCTGGAACCAAACGTCCTGCTGAAAACAACGACGCGAAACAATCGAATAAAAAGAAAACAACCGAGGAGAAGAACAAGAAGAAGGAGAAAGAGCCGGAGGAGGATGACAATAACAATAACAAGAAAGCGTCGTTTCAGAGAGTTTTCACGGAGGATGATGAGGTTGCAATTCTTCAAGGGCTTGTTGATTTCACTGCCAAATCAGGGAATGATCCTACTAAGCATCTATCGGCTTTTTACCAAATTGTGAAAAAGTCAGTTCATTTTAAAGTTACGCTTGATCAATTGCGCGATAAGGTTCGGAGGTTGAGGCTGAAGTTTGAGAATAAATGTAAGAGTGGGAAGACTCCTACCTTTTCGAAGCCGGTAGAGGAGACAATGTTTGAGCTTTCGAAGAAGATTTGGGGTGGTGGTAAAGTTGATGTTAATGAAGGTGAAGAGAATGGGAAAGTTAATGGGAAGGCCGGGAAGAAGGAACCGGCTGCTAAGAAAGCAGCCGCAGCGAGGACAACTAAGAAATTGGTGATGGAGCCTGATTCACCATTGGTGGTTTTGAAGGAAAATAGGAAGGTGGACCGTGGTAATGGAAAGGAGGATACTGGTTTGAGTTTGGATTCGAATGAAATGATTCATTTTGAGCCGGTTATAGATGTGGTGAAGAGGGGAGTGGAGTCGATTGAGGAATCAAAGAAAGGTGAACTGGAGAGATTGATGAATAAGTACAGAATTGCTGAAATGGAACTGTTTATGCAGAAAACTGAGTTGGCCAAGGAAACAGCTACCAAGATAAGGGATGCATTGAATTCATCATCAAGCCATTAG

Protein sequence

>MS.gene057314.t1

MAKKNSATAAVKDDPPPQEDKIEQQDENDEETSSEAAEDDEDEDEEETDTDEDEPPPKTKPIEQTLKSGTKPSIPPARSGTKRPAENNDAKQSNKKKTTEEKNKKKEKEPEEDDNNNNKKASFQRVFTEDDEVAILQGLVDFTAKSGNDPTKHLSAFYQIVKKSVHFKVTLDQLRDKVRRLRLKFENKCKSGKTPTFSKPVEETMFELSKKIWGGGKVDVNEGEENGKVNGKAGKKEPAAKKAAAARTTKKLVMEPDSPLVVLKENRKVDRGNGKEDTGLSLDSNEMIHFEPVIDVVKRGVESIEESKKGELERLMNKYRIAEMELFMQKTELAKETATKIRDALNSSSSH