Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63486.t1 | XP_013460710.1 | 96.9 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 1.20E-289 | 1005 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63486.t1 | A0A072UY59 | 96.9 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 8.8e-290 | 1005.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050638 | MS.gene63486 | 0.822542 | 2.24E-53 | -1.69E-46 |
| MS.gene052066 | MS.gene63486 | 0.817296 | 3.55E-52 | -1.69E-46 |
| MS.gene053633 | MS.gene63486 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene05995 | MS.gene63486 | 0.804564 | 2.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63486.t1 | MTR_3g068125 | 96.933 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 0.0 | 1000 |
| MS.gene63486.t1 | MTR_7g063090 | 49.016 | 508 | 239 | 9 | 1 | 488 | 1 | 508 | 1.03e-169 | 488 |
| MS.gene63486.t1 | MTR_8g028765 | 48.434 | 415 | 205 | 5 | 82 | 489 | 77 | 489 | 3.19e-139 | 410 |
| MS.gene63486.t1 | MTR_7g078320 | 47.596 | 416 | 207 | 7 | 82 | 489 | 77 | 489 | 5.96e-127 | 378 |
| MS.gene63486.t1 | MTR_5g010070 | 46.959 | 411 | 208 | 6 | 82 | 485 | 82 | 489 | 1.34e-126 | 377 |
| MS.gene63486.t1 | MTR_8g098835 | 46.359 | 412 | 210 | 7 | 82 | 485 | 105 | 513 | 2.03e-125 | 375 |
| MS.gene63486.t1 | MTR_4g046680 | 44.068 | 413 | 217 | 7 | 82 | 489 | 74 | 477 | 8.49e-121 | 362 |
| MS.gene63486.t1 | MTR_2g095970 | 44.712 | 416 | 218 | 7 | 82 | 489 | 132 | 543 | 1.32e-118 | 359 |
| MS.gene63486.t1 | MTR_4g061590 | 45.278 | 413 | 215 | 7 | 82 | 485 | 107 | 517 | 1.77e-118 | 358 |
| MS.gene63486.t1 | MTR_2g088940 | 44.391 | 419 | 215 | 7 | 81 | 487 | 56 | 468 | 6.83e-112 | 339 |
| MS.gene63486.t1 | MTR_2g088940 | 44.153 | 419 | 218 | 7 | 81 | 487 | 56 | 470 | 2.16e-111 | 338 |
| MS.gene63486.t1 | MTR_4g046677 | 41.667 | 420 | 236 | 5 | 75 | 487 | 56 | 473 | 4.35e-109 | 332 |
| MS.gene63486.t1 | MTR_5g008060 | 43.077 | 390 | 210 | 4 | 83 | 461 | 126 | 514 | 1.72e-104 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63486.t1 | AT3G11420 | 52.610 | 498 | 211 | 7 | 10 | 487 | 13 | 505 | 0.0 | 521 |
| MS.gene63486.t1 | AT2G37730 | 52.278 | 417 | 189 | 5 | 82 | 488 | 96 | 512 | 1.32e-164 | 476 |
| MS.gene63486.t1 | AT5G41460 | 43.885 | 417 | 222 | 6 | 82 | 489 | 110 | 523 | 2.69e-123 | 370 |
| MS.gene63486.t1 | AT4G23490 | 44.762 | 420 | 217 | 8 | 82 | 489 | 109 | 525 | 5.84e-123 | 369 |
| MS.gene63486.t1 | AT4G15240 | 45.012 | 431 | 218 | 9 | 70 | 489 | 64 | 486 | 3.51e-118 | 356 |
| MS.gene63486.t1 | AT4G11350 | 41.270 | 441 | 243 | 8 | 63 | 489 | 68 | 506 | 1.62e-116 | 352 |
| MS.gene63486.t1 | AT1G33250 | 43.350 | 406 | 218 | 4 | 67 | 461 | 114 | 518 | 1.82e-116 | 353 |
| MS.gene63486.t1 | AT1G01570 | 44.076 | 422 | 215 | 11 | 82 | 485 | 53 | 471 | 7.84e-115 | 347 |
| MS.gene63486.t1 | AT1G01570 | 44.076 | 422 | 215 | 11 | 82 | 485 | 84 | 502 | 2.61e-114 | 347 |
| MS.gene63486.t1 | AT1G05280 | 42.553 | 423 | 229 | 7 | 81 | 489 | 67 | 489 | 7.27e-112 | 340 |
| MS.gene63486.t1 | AT1G07850 | 46.814 | 408 | 206 | 7 | 82 | 481 | 123 | 527 | 8.43e-112 | 341 |
| MS.gene63486.t1 | AT1G05280 | 43.603 | 383 | 203 | 6 | 81 | 450 | 67 | 449 | 1.81e-103 | 317 |
| MS.gene63486.t1 | AT4G00295 | 48.512 | 336 | 161 | 6 | 82 | 405 | 78 | 413 | 2.02e-100 | 310 |
| MS.gene63486.t1 | AT5G12460 | 35.817 | 416 | 248 | 7 | 81 | 487 | 35 | 440 | 1.97e-91 | 285 |
| MS.gene63486.t1 | AT4G11350 | 48.230 | 226 | 107 | 4 | 63 | 278 | 68 | 293 | 6.74e-63 | 207 |
Find 109 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGATACTATTATTATTA+TGG | 0.181752 | 3.1:+56411773 | MS.gene63486:CDS |
| TAGGCAATGCTGCAACTTTA+TGG | 0.202911 | 3.1:+56412906 | MS.gene63486:CDS |
| AGTACATTCTTCCAATATTC+TGG | 0.221242 | 3.1:-56412476 | None:intergenic |
| TCAATTGCACCCGGTGTTTC+CGG | 0.229748 | 3.1:+56412040 | MS.gene63486:CDS |
| CGAGAATTTAGTTACTGTTT+TGG | 0.241656 | 3.1:+56411592 | MS.gene63486:CDS |
| CATTCTTATGATATGGCTTT+TGG | 0.252514 | 3.1:+56411683 | MS.gene63486:CDS |
| TGTTATGCATTCTTATGATA+TGG | 0.258668 | 3.1:+56411676 | MS.gene63486:CDS |
| CTTGTCAACATGTCTCTTAT+AGG | 0.267306 | 3.1:-56412384 | None:intergenic |
| GATGGTCAATATCTATTTCT+TGG | 0.284894 | 3.1:+56412162 | MS.gene63486:CDS |
| TGGGCCTGTGTAAACGAATT+AGG | 0.288879 | 3.1:+56411812 | MS.gene63486:CDS |
| CTTTGCTGCACTATCCTTGC+AGG | 0.301406 | 3.1:-56412116 | None:intergenic |
| ATGGTTCTGATCAAAGAGTT+TGG | 0.320612 | 3.1:+56411792 | MS.gene63486:CDS |
| TTCTTTCAGCTTGACATTAG+AGG | 0.320745 | 3.1:+56411954 | MS.gene63486:intron |
| AGACCGATGGTTTCCATTAC+CGG | 0.321789 | 3.1:+56411205 | MS.gene63486:CDS |
| ATGGTCAATATCTATTTCTT+GGG | 0.336226 | 3.1:+56412163 | MS.gene63486:CDS |
| AAAGCGTTTGTTACGATCAT+AGG | 0.351519 | 3.1:+56412135 | MS.gene63486:CDS |
| AGCTAGACTAGCCAATATTA+TGG | 0.361476 | 3.1:+56411739 | MS.gene63486:CDS |
| AAGACAAGAATCCATAATAT+TGG | 0.372930 | 3.1:-56411750 | None:intergenic |
| TGGTTCTGATCAAAGAGTTT+GGG | 0.381224 | 3.1:+56411793 | MS.gene63486:CDS |
| TCGTCCGGCTTCAAATTCTT+TGG | 0.392591 | 3.1:-56411407 | None:intergenic |
| TGAAGCTGGATCCAGAATAT+TGG | 0.394541 | 3.1:+56412465 | MS.gene63486:CDS |
| GAAGTGTGCATATCAGAATA+AGG | 0.398327 | 3.1:+56412950 | MS.gene63486:CDS |
| ATTACAAACCACCTAACATT+TGG | 0.398470 | 3.1:-56411542 | None:intergenic |
| AATGTTAGGTGGTTTGTAAT+GGG | 0.399701 | 3.1:+56411545 | MS.gene63486:CDS |
| AACATCTCACATATTGTATT+CGG | 0.400973 | 3.1:+56411284 | MS.gene63486:CDS |
| ACAATATGTGAGATGTTTGT+AGG | 0.401191 | 3.1:-56411278 | None:intergenic |
| GACTTGGTTTGCCAAATGTT+AGG | 0.401562 | 3.1:+56411531 | MS.gene63486:CDS |
| CAAAACAGTAACTAAATTCT+CGG | 0.410513 | 3.1:-56411591 | None:intergenic |
| ACATGTAAATGCTCCGGTAA+TGG | 0.419091 | 3.1:-56411218 | None:intergenic |
| TAAAGTTTCTGCCTTGAAGC+TGG | 0.424979 | 3.1:+56412451 | MS.gene63486:CDS |
| GATGGCTGCTGGCATACGTC+AGG | 0.438417 | 3.1:-56412311 | None:intergenic |
| CTGGTTTAGCGAATGTTGAA+TGG | 0.440363 | 3.1:-56411184 | None:intergenic |
| AAAACAGTAACTAAATTCTC+GGG | 0.441158 | 3.1:-56411590 | None:intergenic |
| CAAGTGATATCGATGCTATA+AGG | 0.444451 | 3.1:-56411157 | None:intergenic |
| CAGGTTAGCAAGGCGAGGAC+TGG | 0.447016 | 3.1:+56412350 | MS.gene63486:CDS |
| GTTTGTAGGTATTGTATCAA+TGG | 0.455882 | 3.1:-56411264 | None:intergenic |
| GAAGACATTTGACTTTGGTC+CGG | 0.464283 | 3.1:-56412059 | None:intergenic |
| TATGGATGGAGGAAGCATAA+AGG | 0.473984 | 3.1:+56412924 | MS.gene63486:CDS |
| TGCACTCTGCATCTGCAGTT+CGG | 0.475113 | 3.1:+56411480 | MS.gene63486:CDS |
| TCTTTCAGCTTGACATTAGA+GGG | 0.478025 | 3.1:+56411955 | MS.gene63486:intron |
| CTGATGGAATCCTCTTTCTC+TGG | 0.479756 | 3.1:-56411846 | None:intergenic |
| AAATGTTAGGTGGTTTGTAA+TGG | 0.483649 | 3.1:+56411544 | MS.gene63486:CDS |
| CATATTGTATTCGGCATCGC+TGG | 0.484108 | 3.1:+56411293 | MS.gene63486:CDS |
| ATATTCTGGATCCAGCTTCA+AGG | 0.484846 | 3.1:-56412462 | None:intergenic |
| GTTACGATCATAGGCGAAGA+TGG | 0.485744 | 3.1:+56412144 | MS.gene63486:CDS |
| TGCGCGGCTAAAAGACCATA+TGG | 0.489054 | 3.1:-56411981 | None:intergenic |
| GTAGCAACTACAGCAAGCTT+TGG | 0.489072 | 3.1:+56411339 | MS.gene63486:CDS |
| ATCAATTGTATTATGTTGGT+GGG | 0.494583 | 3.1:+56411630 | MS.gene63486:CDS |
| TTAATGAAGACATTTGACTT+TGG | 0.494866 | 3.1:-56412064 | None:intergenic |
| CACAGGGATGGACTAAGTTC+AGG | 0.495648 | 3.1:+56411453 | MS.gene63486:CDS |
| AATCAATTGTATTATGTTGG+TGG | 0.497202 | 3.1:+56411629 | MS.gene63486:CDS |
| AAGAAGTGCAAGAGAGCAGA+TGG | 0.501500 | 3.1:+56412413 | MS.gene63486:CDS |
| GCAACTACAGCAAGCTTTGG+TGG | 0.504940 | 3.1:+56411342 | MS.gene63486:CDS |
| GTATCTCTTACCAGAGAAAG+AGG | 0.506069 | 3.1:+56411836 | MS.gene63486:CDS |
| TCGCCTTGCTAACCTGATCC+AGG | 0.517031 | 3.1:-56412343 | None:intergenic |
| CTTTCACGTTTAATACTCGA+TGG | 0.519089 | 3.1:+56412282 | MS.gene63486:CDS |
| GTTTCATTCTCAATAAGAGT+TGG | 0.520650 | 3.1:+56411122 | MS.gene63486:CDS |
| GACATTAGAGGGAATCCATA+TGG | 0.523887 | 3.1:+56411966 | MS.gene63486:CDS |
| TGTATAACATGTAAATGCTC+CGG | 0.525305 | 3.1:-56411224 | None:intergenic |
| CACAATCAATTGTATTATGT+TGG | 0.531738 | 3.1:+56411626 | MS.gene63486:CDS |
| GACTTTGGTCCGGAAACACC+GGG | 0.532438 | 3.1:-56412049 | None:intergenic |
| GCACTATCCTTGCAGGGTCA+AGG | 0.533225 | 3.1:-56412109 | None:intergenic |
| TGACTTTGGTCCGGAAACAC+CGG | 0.538833 | 3.1:-56412050 | None:intergenic |
| TATGGAATTAGCATATCGTC+CGG | 0.541449 | 3.1:-56411422 | None:intergenic |
| GGTAATGGAAACCATCGGTC+TGG | 0.541977 | 3.1:-56411203 | None:intergenic |
| CATTGCAGACGTTTAAAACA+TGG | 0.544137 | 3.1:+56412240 | MS.gene63486:CDS |
| CAATGCTGCAACTTTATGGA+TGG | 0.549920 | 3.1:+56412910 | MS.gene63486:CDS |
| CAGAGAAAGAGGATTCCATC+AGG | 0.551061 | 3.1:+56411847 | MS.gene63486:CDS |
| GATGGAGGAAGCATAAAGGA+TGG | 0.551195 | 3.1:+56412928 | MS.gene63486:CDS |
| ACACCGGGTGCAATTGATCA+AGG | 0.552142 | 3.1:-56412034 | None:intergenic |
| AAGAGACATGTTGACAAGGA+AGG | 0.554279 | 3.1:+56412389 | MS.gene63486:CDS |
| ACAAAACCTCTGCAAGCAGT+TGG | 0.555849 | 3.1:-56411368 | None:intergenic |
| TAAATAGTAATTGTTTCTTG+AGG | 0.556987 | 3.1:-56412982 | None:intergenic |
| GTGACACAAGCGGTGCCAGA+GGG | 0.558684 | 3.1:-56412004 | None:intergenic |
| AATTCCATATAAAATCTCAC+AGG | 0.565071 | 3.1:+56411436 | MS.gene63486:CDS |
| AAAGATGAATCAAGACCGGA+TGG | 0.570780 | 3.1:+56411034 | None:intergenic |
| GATCATGACAAGATTCCATC+CGG | 0.571059 | 3.1:-56411049 | None:intergenic |
| CATATAAAATCTCACAGGGA+TGG | 0.576471 | 3.1:+56411441 | MS.gene63486:CDS |
| TTTCCTGGATCAGGTTAGCA+AGG | 0.577526 | 3.1:+56412340 | MS.gene63486:CDS |
| AAGCGGTGCCAGAGGGTGCG+CGG | 0.577646 | 3.1:-56411997 | None:intergenic |
| GGTGCAATTGATCAAGGTGA+TGG | 0.580356 | 3.1:-56412028 | None:intergenic |
| AAAGCTTGCTGTAGTTGCTA+CGG | 0.585308 | 3.1:-56411337 | None:intergenic |
| GTTTACGAAAGCTTTAGACT+TGG | 0.588389 | 3.1:+56411515 | MS.gene63486:CDS |
| CATCGAGTATTAAACGTGAA+AGG | 0.595299 | 3.1:-56412281 | None:intergenic |
| TGCTGCAACTTTATGGATGG+AGG | 0.596653 | 3.1:+56412913 | MS.gene63486:CDS |
| TTGGTTTGCCAAATGTTAGG+TGG | 0.598605 | 3.1:+56411534 | MS.gene63486:CDS |
| TACTCCTAATTCGTTTACAC+AGG | 0.598658 | 3.1:-56411816 | None:intergenic |
| TTTGCTGCACTATCCTTGCA+GGG | 0.605237 | 3.1:-56412115 | None:intergenic |
| TGGAATCCAACTGCTTGCAG+AGG | 0.608124 | 3.1:+56411362 | MS.gene63486:CDS |
| GAAACCAAAGAATTTGAAGC+CGG | 0.608342 | 3.1:+56411403 | MS.gene63486:CDS |
| ACATGGCGAAGTTCGAGTGA+TGG | 0.608871 | 3.1:+56412257 | MS.gene63486:CDS |
| TGGTCAATATCTATTTCTTG+GGG | 0.611066 | 3.1:+56412164 | MS.gene63486:CDS |
| ATGGCTGCTGGCATACGTCA+GGG | 0.616574 | 3.1:-56412310 | None:intergenic |
| CATACGACCTTGACCCTGCA+AGG | 0.619078 | 3.1:+56412102 | MS.gene63486:CDS |
| TCGCTGGTTCATCGAAAATG+TGG | 0.619094 | 3.1:+56411309 | MS.gene63486:CDS |
| AGTGACACAAGCGGTGCCAG+AGG | 0.619459 | 3.1:-56412005 | None:intergenic |
| TACATCATTGTTGATAACAG+CGG | 0.636999 | 3.1:+56412205 | MS.gene63486:CDS |
| CTATAAGAGACATGTTGACA+AGG | 0.643214 | 3.1:+56412385 | MS.gene63486:CDS |
| TGGATCAGGTTAGCAAGGCG+AGG | 0.644993 | 3.1:+56412345 | MS.gene63486:CDS |
| TGTAATGGGAGATGATGATA+CGG | 0.647634 | 3.1:+56411559 | MS.gene63486:CDS |
| TCACCTTGATCAATTGCACC+CGG | 0.648699 | 3.1:+56412031 | MS.gene63486:CDS |
| TGGTGGGAATTCTGAGAGTG+TGG | 0.651969 | 3.1:+56411646 | MS.gene63486:CDS |
| AAGTTGCAGCATTGCCTACG+TGG | 0.657008 | 3.1:-56412901 | None:intergenic |
| CATTCGCTAAACCAGACCGA+TGG | 0.664525 | 3.1:+56411192 | MS.gene63486:CDS |
| GCTCCGGTAATGGAAACCAT+CGG | 0.666665 | 3.1:-56411208 | None:intergenic |
| AAACAGTAACTAAATTCTCG+GGG | 0.669459 | 3.1:-56411589 | None:intergenic |
| AGGTGATGGAGTGACACAAG+CGG | 0.678083 | 3.1:-56412014 | None:intergenic |
| CATCTGCAGTTCGGATATCG+CGG | 0.678366 | 3.1:+56411489 | MS.gene63486:CDS |
| ATTCCATATAAAATCTCACA+GGG | 0.693816 | 3.1:+56411437 | MS.gene63486:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAGATACTATTATTATTA+TGG | + | chr3.1:56411773-56411792 | MS.gene63486:CDS | 15.0% |
| !! | TTCTTTATTCTATATTCTAT+GGG | + | chr3.1:56411907-56411926 | MS.gene63486:intron | 15.0% |
| !! | TTTCTTTATTCTATATTCTA+TGG | + | chr3.1:56411906-56411925 | MS.gene63486:intron | 15.0% |
| !!! | GATGTTTTGTTTTTATTTTG+TGG | - | chr3.1:56412755-56412774 | None:intergenic | 20.0% |
| !!! | TAAATAGTAATTGTTTCTTG+AGG | - | chr3.1:56412985-56413004 | None:intergenic | 20.0% |
| ! | AAAACAGTAACTAAATTCTC+GGG | - | chr3.1:56411593-56411612 | None:intergenic | 25.0% |
| ! | AACATCTCACATATTGTATT+CGG | + | chr3.1:56411284-56411303 | MS.gene63486:CDS | 25.0% |
| ! | AAGACAAGAATCCATAATAT+TGG | - | chr3.1:56411753-56411772 | None:intergenic | 25.0% |
| ! | AATCAATTGTATTATGTTGG+TGG | + | chr3.1:56411629-56411648 | MS.gene63486:CDS | 25.0% |
| ! | AATTCCATATAAAATCTCAC+AGG | + | chr3.1:56411436-56411455 | MS.gene63486:CDS | 25.0% |
| ! | ACTTAAACTCAAAATGCTAT+AGG | - | chr3.1:56412835-56412854 | None:intergenic | 25.0% |
| ! | ACTTAATTCAGTTTATCTAC+TGG | - | chr3.1:56412720-56412739 | None:intergenic | 25.0% |
| ! | ATCAATTGTATTATGTTGGT+GGG | + | chr3.1:56411630-56411649 | MS.gene63486:CDS | 25.0% |
| ! | ATTCCATATAAAATCTCACA+GGG | + | chr3.1:56411437-56411456 | MS.gene63486:CDS | 25.0% |
| ! | CAAAACAGTAACTAAATTCT+CGG | - | chr3.1:56411594-56411613 | None:intergenic | 25.0% |
| ! | CACAATCAATTGTATTATGT+TGG | + | chr3.1:56411626-56411645 | MS.gene63486:CDS | 25.0% |
| ! | CCTTATATACCAGAAAAAAT+AGG | + | chr3.1:56411092-56411111 | MS.gene63486:CDS | 25.0% |
| ! | TGTTATGCATTCTTATGATA+TGG | + | chr3.1:56411676-56411695 | MS.gene63486:CDS | 25.0% |
| !! | ATGGGAAATTTACTGTTTTA+TGG | + | chr3.1:56411925-56411944 | MS.gene63486:intron | 25.0% |
| !! | ATGGTCAATATCTATTTCTT+GGG | + | chr3.1:56412163-56412182 | MS.gene63486:CDS | 25.0% |
| !! | GAGAATTTAGTTACTGTTTT+GGG | + | chr3.1:56411593-56411612 | MS.gene63486:CDS | 25.0% |
| !! | TTAATGAAGACATTTGACTT+TGG | - | chr3.1:56412067-56412086 | None:intergenic | 25.0% |
| !!! | CCTATTTTTTCTGGTATATA+AGG | - | chr3.1:56411095-56411114 | None:intergenic | 25.0% |
| !!! | TGATTTGACTGTTTTAAATC+AGG | + | chr3.1:56412876-56412895 | MS.gene63486:intron | 25.0% |
| AAACAGTAACTAAATTCTCG+GGG | - | chr3.1:56411592-56411611 | None:intergenic | 30.0% | |
| ACAATATGTGAGATGTTTGT+AGG | - | chr3.1:56411281-56411300 | None:intergenic | 30.0% | |
| AGTACATTCTTCCAATATTC+TGG | - | chr3.1:56412479-56412498 | None:intergenic | 30.0% | |
| ATTACAAACCACCTAACATT+TGG | - | chr3.1:56411545-56411564 | None:intergenic | 30.0% | |
| ATTTAGCTGTTTGTCCAAAA+AGG | - | chr3.1:56412550-56412569 | None:intergenic | 30.0% | |
| GATAAGATATGAAGAGTTTC+TGG | + | chr3.1:56412612-56412631 | MS.gene63486:intron | 30.0% | |
| GTTTCATTCTCAATAAGAGT+TGG | + | chr3.1:56411122-56411141 | MS.gene63486:CDS | 30.0% | |
| TGATCCAGGAAAAATATAGA+TGG | - | chr3.1:56412332-56412351 | None:intergenic | 30.0% | |
| TGTATAACATGTAAATGCTC+CGG | - | chr3.1:56411227-56411246 | None:intergenic | 30.0% | |
| ! | AAATGTTAGGTGGTTTGTAA+TGG | + | chr3.1:56411544-56411563 | MS.gene63486:CDS | 30.0% |
| ! | AATGTTAGGTGGTTTGTAAT+GGG | + | chr3.1:56411545-56411564 | MS.gene63486:CDS | 30.0% |
| ! | ATCTATATTTTTCCTGGATC+AGG | + | chr3.1:56412331-56412350 | MS.gene63486:CDS | 30.0% |
| ! | CATTCTTATGATATGGCTTT+TGG | + | chr3.1:56411683-56411702 | MS.gene63486:CDS | 30.0% |
| ! | CGAGAATTTAGTTACTGTTT+TGG | + | chr3.1:56411592-56411611 | MS.gene63486:CDS | 30.0% |
| ! | GATGGTCAATATCTATTTCT+TGG | + | chr3.1:56412162-56412181 | MS.gene63486:CDS | 30.0% |
| ! | GTTTGTAGGTATTGTATCAA+TGG | - | chr3.1:56411267-56411286 | None:intergenic | 30.0% |
| ! | TGGTCAATATCTATTTCTTG+GGG | + | chr3.1:56412164-56412183 | MS.gene63486:CDS | 30.0% |
| !! | GTATGTTTTGTTATACCTGA+TGG | - | chr3.1:56411865-56411884 | None:intergenic | 30.0% |
| !! | TACATCATTGTTGATAACAG+CGG | + | chr3.1:56412205-56412224 | MS.gene63486:CDS | 30.0% |
| ACCAGAAAAAATAGGTGACT+TGG | + | chr3.1:56411100-56411119 | MS.gene63486:CDS | 35.0% | |
| CAAGTGATATCGATGCTATA+AGG | - | chr3.1:56411160-56411179 | None:intergenic | 35.0% | |
| CATATAAAATCTCACAGGGA+TGG | + | chr3.1:56411441-56411460 | MS.gene63486:CDS | 35.0% | |
| CATCGAGTATTAAACGTGAA+AGG | - | chr3.1:56412284-56412303 | None:intergenic | 35.0% | |
| CTATAAGAGACATGTTGACA+AGG | + | chr3.1:56412385-56412404 | MS.gene63486:CDS | 35.0% | |
| CTTGTCAACATGTCTCTTAT+AGG | - | chr3.1:56412387-56412406 | None:intergenic | 35.0% | |
| CTTTCACGTTTAATACTCGA+TGG | + | chr3.1:56412282-56412301 | MS.gene63486:CDS | 35.0% | |
| GAAGTGTGCATATCAGAATA+AGG | + | chr3.1:56412950-56412969 | MS.gene63486:CDS | 35.0% | |
| TACTCCTAATTCGTTTACAC+AGG | - | chr3.1:56411819-56411838 | None:intergenic | 35.0% | |
| TATGGAATTAGCATATCGTC+CGG | - | chr3.1:56411425-56411444 | None:intergenic | 35.0% | |
| TCTTTCAGCTTGACATTAGA+GGG | + | chr3.1:56411955-56411974 | MS.gene63486:intron | 35.0% | |
| TTCTTTCAGCTTGACATTAG+AGG | + | chr3.1:56411954-56411973 | MS.gene63486:intron | 35.0% | |
| ! | AAAGCGTTTGTTACGATCAT+AGG | + | chr3.1:56412135-56412154 | MS.gene63486:CDS | 35.0% |
| ! | AGCTAGACTAGCCAATATTA+TGG | + | chr3.1:56411739-56411758 | MS.gene63486:CDS | 35.0% |
| ! | CATCCCTGTGAGATTTTATA+TGG | - | chr3.1:56411443-56411462 | None:intergenic | 35.0% |
| ! | CATTGCAGACGTTTAAAACA+TGG | + | chr3.1:56412240-56412259 | MS.gene63486:CDS | 35.0% |
| ! | GAAACCAAAGAATTTGAAGC+CGG | + | chr3.1:56411403-56411422 | MS.gene63486:CDS | 35.0% |
| ! | TCTTATGATATGGCTTTTGG+TGG | + | chr3.1:56411686-56411705 | MS.gene63486:CDS | 35.0% |
| ! | TGTAATGGGAGATGATGATA+CGG | + | chr3.1:56411559-56411578 | MS.gene63486:CDS | 35.0% |
| ! | TTTTAAATCAGGTACCACGT+AGG | + | chr3.1:56412887-56412906 | MS.gene63486:intron | 35.0% |
| !! | ATGGTTCTGATCAAAGAGTT+TGG | + | chr3.1:56411792-56411811 | MS.gene63486:CDS | 35.0% |
| !! | CATGTTTTAAACGTCTGCAA+TGG | - | chr3.1:56412242-56412261 | None:intergenic | 35.0% |
| !! | GTTTACGAAAGCTTTAGACT+TGG | + | chr3.1:56411515-56411534 | MS.gene63486:CDS | 35.0% |
| !! | TGGTTCTGATCAAAGAGTTT+GGG | + | chr3.1:56411793-56411812 | MS.gene63486:CDS | 35.0% |
| !!! | ACCAAGTCACCTATTTTTTC+TGG | - | chr3.1:56411104-56411123 | None:intergenic | 35.0% |
| AAGAGACATGTTGACAAGGA+AGG | + | chr3.1:56412389-56412408 | MS.gene63486:CDS | 40.0% | |
| ACATGTAAATGCTCCGGTAA+TGG | - | chr3.1:56411221-56411240 | None:intergenic | 40.0% | |
| ATATTCTGGATCCAGCTTCA+AGG | - | chr3.1:56412465-56412484 | None:intergenic | 40.0% | |
| ATGGTTGAAAGTGAGAGAGA+GGG | - | chr3.1:56412511-56412530 | None:intergenic | 40.0% | |
| CAATGCTGCAACTTTATGGA+TGG | + | chr3.1:56412910-56412929 | MS.gene63486:CDS | 40.0% | |
| CTGGTTTAGCGAATGTTGAA+TGG | - | chr3.1:56411187-56411206 | None:intergenic | 40.0% | |
| GACATTAGAGGGAATCCATA+TGG | + | chr3.1:56411966-56411985 | MS.gene63486:CDS | 40.0% | |
| GATCATGACAAGATTCCATC+CGG | - | chr3.1:56411052-56411071 | None:intergenic | 40.0% | |
| GGAAAAATATAGATGGCTGC+TGG | - | chr3.1:56412325-56412344 | None:intergenic | 40.0% | |
| GTATCTCTTACCAGAGAAAG+AGG | + | chr3.1:56411836-56411855 | MS.gene63486:CDS | 40.0% | |
| TAAAGTTTCTGCCTTGAAGC+TGG | + | chr3.1:56412451-56412470 | MS.gene63486:CDS | 40.0% | |
| TAGGCAATGCTGCAACTTTA+TGG | + | chr3.1:56412906-56412925 | MS.gene63486:CDS | 40.0% | |
| TATGGTTGAAAGTGAGAGAG+AGG | - | chr3.1:56412512-56412531 | None:intergenic | 40.0% | |
| TGAAGCTGGATCCAGAATAT+TGG | + | chr3.1:56412465-56412484 | MS.gene63486:CDS | 40.0% | |
| ! | ACACACACGAAGTTCCTTTT+TGG | + | chr3.1:56412533-56412552 | MS.gene63486:intron | 40.0% |
| ! | GAAGACATTTGACTTTGGTC+CGG | - | chr3.1:56412062-56412081 | None:intergenic | 40.0% |
| ! | GCAGCCATCTATATTTTTCC+TGG | + | chr3.1:56412325-56412344 | MS.gene63486:CDS | 40.0% |
| ! | TATGATATGGCTTTTGGTGG+TGG | + | chr3.1:56411689-56411708 | MS.gene63486:CDS | 40.0% |
| ! | TATGGATGGAGGAAGCATAA+AGG | + | chr3.1:56412924-56412943 | MS.gene63486:CDS | 40.0% |
| !! | AAAGCTTGCTGTAGTTGCTA+CGG | - | chr3.1:56411340-56411359 | None:intergenic | 40.0% |
| !! | GACTTGGTTTGCCAAATGTT+AGG | + | chr3.1:56411531-56411550 | MS.gene63486:CDS | 40.0% |
| !! | TTGGTTTGCCAAATGTTAGG+TGG | + | chr3.1:56411534-56411553 | MS.gene63486:CDS | 40.0% |
| ACAAAACCTCTGCAAGCAGT+TGG | - | chr3.1:56411371-56411390 | None:intergenic | 45.0% | |
| AGACCGATGGTTTCCATTAC+CGG | + | chr3.1:56411205-56411224 | MS.gene63486:CDS | 45.0% | |
| AGGAACTTCGTGTGTGTGTA+TGG | - | chr3.1:56412530-56412549 | None:intergenic | 45.0% | |
| CAGAGAAAGAGGATTCCATC+AGG | + | chr3.1:56411847-56411866 | MS.gene63486:CDS | 45.0% | |
| CATATTGTATTCGGCATCGC+TGG | + | chr3.1:56411293-56411312 | MS.gene63486:CDS | 45.0% | |
| CTGATGGAATCCTCTTTCTC+TGG | - | chr3.1:56411849-56411868 | None:intergenic | 45.0% | |
| GGTGCAATTGATCAAGGTGA+TGG | - | chr3.1:56412031-56412050 | None:intergenic | 45.0% | |
| GTAGCAACTACAGCAAGCTT+TGG | + | chr3.1:56411339-56411358 | MS.gene63486:CDS | 45.0% | |
| GTTACGATCATAGGCGAAGA+TGG | + | chr3.1:56412144-56412163 | MS.gene63486:CDS | 45.0% | |
| TCACCTTGATCAATTGCACC+CGG | + | chr3.1:56412031-56412050 | MS.gene63486:CDS | 45.0% | |
| TCGTCCGGCTTCAAATTCTT+TGG | - | chr3.1:56411410-56411429 | None:intergenic | 45.0% | |
| TGCTGCAACTTTATGGATGG+AGG | + | chr3.1:56412913-56412932 | MS.gene63486:CDS | 45.0% | |
| TGGGCCTGTGTAAACGAATT+AGG | + | chr3.1:56411812-56411831 | MS.gene63486:CDS | 45.0% | |
| TTTCCTGGATCAGGTTAGCA+AGG | + | chr3.1:56412340-56412359 | MS.gene63486:CDS | 45.0% | |
| TTTGCTGCACTATCCTTGCA+GGG | - | chr3.1:56412118-56412137 | None:intergenic | 45.0% | |
| ! | AAGAAGTGCAAGAGAGCAGA+TGG | + | chr3.1:56412413-56412432 | MS.gene63486:CDS | 45.0% |
| ! | GATGGAGGAAGCATAAAGGA+TGG | + | chr3.1:56412928-56412947 | MS.gene63486:CDS | 45.0% |
| !! | TCGCTGGTTCATCGAAAATG+TGG | + | chr3.1:56411309-56411328 | MS.gene63486:CDS | 45.0% |
| AAAGTGAGAGAGAGGGAGAG+AGG | - | chr3.1:56412504-56412523 | None:intergenic | 50.0% | |
| AAGTGAGAGAGAGGGAGAGA+GGG | - | chr3.1:56412503-56412522 | None:intergenic | 50.0% | |
| AAGTTGCAGCATTGCCTACG+TGG | - | chr3.1:56412904-56412923 | None:intergenic | 50.0% | |
| ACACCGGGTGCAATTGATCA+AGG | - | chr3.1:56412037-56412056 | None:intergenic | 50.0% | |
| ACATGGCGAAGTTCGAGTGA+TGG | + | chr3.1:56412257-56412276 | MS.gene63486:CDS | 50.0% | |
| CATCTGCAGTTCGGATATCG+CGG | + | chr3.1:56411489-56411508 | MS.gene63486:CDS | 50.0% | |
| CATTCGCTAAACCAGACCGA+TGG | + | chr3.1:56411192-56411211 | MS.gene63486:CDS | 50.0% | |
| CTTTGCTGCACTATCCTTGC+AGG | - | chr3.1:56412119-56412138 | None:intergenic | 50.0% | |
| TCAATTGCACCCGGTGTTTC+CGG | + | chr3.1:56412040-56412059 | MS.gene63486:CDS | 50.0% | |
| TGACTTTGGTCCGGAAACAC+CGG | - | chr3.1:56412053-56412072 | None:intergenic | 50.0% | |
| TGCACTCTGCATCTGCAGTT+CGG | + | chr3.1:56411480-56411499 | MS.gene63486:CDS | 50.0% | |
| TGCGCGGCTAAAAGACCATA+TGG | - | chr3.1:56411984-56412003 | None:intergenic | 50.0% | |
| TGGAATCCAACTGCTTGCAG+AGG | + | chr3.1:56411362-56411381 | MS.gene63486:CDS | 50.0% | |
| ! | GCAACTACAGCAAGCTTTGG+TGG | + | chr3.1:56411342-56411361 | MS.gene63486:CDS | 50.0% |
| ! | TGGTGGGAATTCTGAGAGTG+TGG | + | chr3.1:56411646-56411665 | MS.gene63486:CDS | 50.0% |
| !! | AGGTGATGGAGTGACACAAG+CGG | - | chr3.1:56412017-56412036 | None:intergenic | 50.0% |
| !! | CACAGGGATGGACTAAGTTC+AGG | + | chr3.1:56411453-56411472 | MS.gene63486:CDS | 50.0% |
| !! | CTGCTTGCAGAGGTTTTGTC+TGG | + | chr3.1:56411372-56411391 | MS.gene63486:CDS | 50.0% |
| !! | GCTCCGGTAATGGAAACCAT+CGG | - | chr3.1:56411211-56411230 | None:intergenic | 50.0% |
| !! | GGTAATGGAAACCATCGGTC+TGG | - | chr3.1:56411206-56411225 | None:intergenic | 50.0% |
| !!! | GATATGGCTTTTGGTGGTGG+TGG | + | chr3.1:56411692-56411711 | MS.gene63486:CDS | 50.0% |
| ATGGCTGCTGGCATACGTCA+GGG | - | chr3.1:56412313-56412332 | None:intergenic | 55.0% | |
| CATACGACCTTGACCCTGCA+AGG | + | chr3.1:56412102-56412121 | MS.gene63486:CDS | 55.0% | |
| GACTTTGGTCCGGAAACACC+GGG | - | chr3.1:56412052-56412071 | None:intergenic | 55.0% | |
| GCACTATCCTTGCAGGGTCA+AGG | - | chr3.1:56412112-56412131 | None:intergenic | 55.0% | |
| TCGCCTTGCTAACCTGATCC+AGG | - | chr3.1:56412346-56412365 | None:intergenic | 55.0% | |
| TGGATCAGGTTAGCAAGGCG+AGG | + | chr3.1:56412345-56412364 | MS.gene63486:CDS | 55.0% | |
| CAGGTTAGCAAGGCGAGGAC+TGG | + | chr3.1:56412350-56412369 | MS.gene63486:CDS | 60.0% | |
| GATGGCTGCTGGCATACGTC+AGG | - | chr3.1:56412314-56412333 | None:intergenic | 60.0% | |
| ! | AGTGACACAAGCGGTGCCAG+AGG | - | chr3.1:56412008-56412027 | None:intergenic | 60.0% |
| ! | GTGACACAAGCGGTGCCAGA+GGG | - | chr3.1:56412007-56412026 | None:intergenic | 60.0% |
| ! | TCTTTTAGCCGCGCACCCTC+TGG | + | chr3.1:56411989-56412008 | MS.gene63486:CDS | 60.0% |
| ! | AAGCGGTGCCAGAGGGTGCG+CGG | - | chr3.1:56412000-56412019 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 56411038 | 56413005 | 56411038 | ID=MS.gene63486 |
| chr3.1 | mRNA | 56411038 | 56413005 | 56411038 | ID=MS.gene63486.t1;Parent=MS.gene63486 |
| chr3.1 | exon | 56411038 | 56411868 | 56411038 | ID=MS.gene63486.t1.exon1;Parent=MS.gene63486.t1 |
| chr3.1 | CDS | 56411038 | 56411868 | 56411038 | ID=cds.MS.gene63486.t1;Parent=MS.gene63486.t1 |
| chr3.1 | exon | 56411963 | 56412493 | 56411963 | ID=MS.gene63486.t1.exon2;Parent=MS.gene63486.t1 |
| chr3.1 | CDS | 56411963 | 56412493 | 56411963 | ID=cds.MS.gene63486.t1;Parent=MS.gene63486.t1 |
| chr3.1 | exon | 56412898 | 56413005 | 56412898 | ID=MS.gene63486.t1.exon3;Parent=MS.gene63486.t1 |
| chr3.1 | CDS | 56412898 | 56413005 | 56412898 | ID=cds.MS.gene63486.t1;Parent=MS.gene63486.t1 |
| Gene Sequence |
| Protein sequence |
