Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63492.t1 | RHN68287.1 | 98.5 | 273 | 4 | 0 | 1 | 273 | 1 | 273 | 2.60E-148 | 534.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63492.t1 | Q9LHT0 | 67.4 | 258 | 84 | 0 | 14 | 271 | 6 | 263 | 1.5e-99 | 364.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63492.t1 | A0A396IZB6 | 98.5 | 273 | 4 | 0 | 1 | 273 | 1 | 273 | 1.9e-148 | 534.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052256 | MS.gene63492 | 0.800779 | 1.23E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63492.t1 | MTR_3g068175 | 98.168 | 273 | 5 | 0 | 1 | 273 | 1 | 273 | 0.0 | 550 |
MS.gene63492.t1 | MTR_3g068175 | 96.751 | 277 | 5 | 1 | 1 | 273 | 1 | 277 | 0.0 | 545 |
MS.gene63492.t1 | MTR_3g068155 | 79.779 | 272 | 55 | 0 | 2 | 273 | 4 | 275 | 3.01e-162 | 451 |
MS.gene63492.t1 | MTR_3g068085 | 75.097 | 257 | 64 | 0 | 17 | 273 | 15 | 271 | 8.69e-146 | 409 |
MS.gene63492.t1 | MTR_3g068070 | 73.622 | 254 | 67 | 0 | 13 | 266 | 11 | 264 | 6.10e-142 | 400 |
MS.gene63492.t1 | MTR_3g068065 | 70.588 | 272 | 80 | 0 | 1 | 272 | 1 | 272 | 1.51e-136 | 386 |
MS.gene63492.t1 | MTR_4g064883 | 62.891 | 256 | 95 | 0 | 14 | 269 | 11 | 266 | 3.62e-123 | 352 |
MS.gene63492.t1 | MTR_4g064887 | 62.308 | 260 | 98 | 0 | 5 | 264 | 3 | 262 | 8.41e-121 | 346 |
MS.gene63492.t1 | MTR_7g063320 | 58.268 | 254 | 102 | 1 | 14 | 263 | 12 | 265 | 2.17e-108 | 314 |
MS.gene63492.t1 | MTR_7g063390 | 56.604 | 265 | 111 | 1 | 3 | 263 | 2 | 266 | 1.52e-103 | 302 |
MS.gene63492.t1 | MTR_7g063270 | 56.746 | 252 | 106 | 1 | 14 | 262 | 13 | 264 | 1.29e-102 | 300 |
MS.gene63492.t1 | MTR_7g063330 | 57.540 | 252 | 104 | 1 | 14 | 262 | 12 | 263 | 4.20e-102 | 298 |
MS.gene63492.t1 | MTR_7g063360 | 55.849 | 265 | 113 | 1 | 3 | 263 | 2 | 266 | 1.34e-101 | 297 |
MS.gene63492.t1 | MTR_7g063260 | 55.731 | 253 | 108 | 1 | 14 | 262 | 13 | 265 | 3.59e-100 | 293 |
MS.gene63492.t1 | MTR_4g064887 | 59.903 | 207 | 83 | 0 | 5 | 211 | 3 | 209 | 2.45e-89 | 265 |
MS.gene63492.t1 | MTR_4g064883 | 61.111 | 198 | 77 | 0 | 14 | 211 | 11 | 208 | 5.88e-89 | 263 |
MS.gene63492.t1 | MTR_7g063270 | 48.413 | 252 | 78 | 5 | 14 | 262 | 13 | 215 | 6.01e-76 | 230 |
MS.gene63492.t1 | MTR_4g132850 | 35.772 | 246 | 153 | 4 | 17 | 261 | 7 | 248 | 3.23e-36 | 129 |
MS.gene63492.t1 | MTR_7g094520 | 32.031 | 256 | 156 | 8 | 17 | 261 | 11 | 259 | 2.43e-29 | 112 |
MS.gene63492.t1 | MTR_7g094510 | 33.071 | 254 | 154 | 8 | 17 | 260 | 6 | 253 | 2.83e-29 | 111 |
MS.gene63492.t1 | MTR_3g085740 | 28.731 | 268 | 178 | 6 | 1 | 263 | 61 | 320 | 6.90e-26 | 104 |
MS.gene63492.t1 | MTR_7g071680 | 31.111 | 270 | 158 | 7 | 17 | 262 | 29 | 294 | 1.43e-24 | 100 |
MS.gene63492.t1 | MTR_4g058810 | 31.418 | 261 | 166 | 11 | 16 | 266 | 10 | 267 | 1.73e-24 | 99.4 |
MS.gene63492.t1 | MTR_4g058840 | 31.538 | 260 | 165 | 11 | 17 | 266 | 11 | 267 | 1.17e-22 | 94.4 |
MS.gene63492.t1 | MTR_4g058820 | 31.538 | 260 | 165 | 11 | 17 | 266 | 11 | 267 | 1.17e-22 | 94.4 |
MS.gene63492.t1 | MTR_1g068955 | 29.434 | 265 | 170 | 9 | 12 | 265 | 9 | 267 | 1.51e-21 | 91.7 |
MS.gene63492.t1 | MTR_4g052350 | 29.885 | 261 | 162 | 10 | 17 | 266 | 14 | 264 | 2.05e-21 | 91.3 |
MS.gene63492.t1 | MTR_4g052340 | 28.906 | 256 | 171 | 6 | 17 | 266 | 14 | 264 | 1.22e-20 | 89.0 |
MS.gene63492.t1 | MTR_4g052320 | 28.405 | 257 | 172 | 7 | 17 | 266 | 8 | 259 | 5.77e-20 | 87.0 |
MS.gene63492.t1 | MTR_5g098650 | 78.431 | 51 | 11 | 0 | 223 | 273 | 124 | 174 | 4.23e-19 | 82.8 |
MS.gene63492.t1 | MTR_8g442750 | 29.457 | 258 | 163 | 7 | 17 | 261 | 14 | 265 | 7.68e-19 | 84.7 |
MS.gene63492.t1 | MTR_1196s0010 | 30.769 | 247 | 154 | 7 | 20 | 260 | 277 | 512 | 8.44e-19 | 86.3 |
MS.gene63492.t1 | MTR_7g107670 | 28.077 | 260 | 165 | 7 | 17 | 262 | 33 | 284 | 1.64e-18 | 83.6 |
MS.gene63492.t1 | MTR_4g052300 | 27.692 | 260 | 169 | 8 | 17 | 266 | 8 | 258 | 3.66e-18 | 82.0 |
MS.gene63492.t1 | MTR_4g131740 | 27.907 | 258 | 174 | 6 | 17 | 265 | 40 | 294 | 6.26e-17 | 79.3 |
MS.gene63492.t1 | MTR_7g113650 | 27.626 | 257 | 173 | 7 | 17 | 264 | 40 | 292 | 9.95e-17 | 78.6 |
MS.gene63492.t1 | MTR_7g083870 | 28.090 | 267 | 175 | 9 | 7 | 262 | 27 | 287 | 2.06e-16 | 77.8 |
MS.gene63492.t1 | MTR_1g082760 | 26.357 | 258 | 177 | 7 | 17 | 265 | 40 | 293 | 2.40e-16 | 77.4 |
MS.gene63492.t1 | MTR_4g078630 | 28.417 | 278 | 168 | 9 | 4 | 262 | 6 | 271 | 1.14e-15 | 75.5 |
MS.gene63492.t1 | MTR_6g023590 | 28.623 | 276 | 161 | 10 | 5 | 261 | 3 | 261 | 1.14e-15 | 75.1 |
MS.gene63492.t1 | MTR_3g020670 | 32.700 | 263 | 152 | 11 | 17 | 262 | 16 | 270 | 1.28e-15 | 75.5 |
MS.gene63492.t1 | MTR_7g105580 | 27.381 | 252 | 151 | 10 | 17 | 260 | 8 | 235 | 3.50e-15 | 73.6 |
MS.gene63492.t1 | MTR_7g105460 | 26.642 | 274 | 183 | 9 | 8 | 272 | 4 | 268 | 8.39e-15 | 72.8 |
MS.gene63492.t1 | MTR_4g058830 | 31.013 | 158 | 103 | 5 | 114 | 266 | 57 | 213 | 8.99e-15 | 72.0 |
MS.gene63492.t1 | MTR_6g023990 | 28.839 | 267 | 172 | 9 | 6 | 261 | 3 | 262 | 1.41e-14 | 72.0 |
MS.gene63492.t1 | MTR_2g090165 | 29.588 | 267 | 177 | 9 | 12 | 271 | 1 | 263 | 1.83e-14 | 72.0 |
MS.gene63492.t1 | MTR_1579s0020 | 35.227 | 88 | 56 | 1 | 183 | 270 | 1 | 87 | 1.86e-14 | 67.8 |
MS.gene63492.t1 | MTR_6g023610 | 28.413 | 271 | 164 | 9 | 5 | 259 | 3 | 259 | 2.36e-14 | 71.6 |
MS.gene63492.t1 | MTR_6g023910 | 28.077 | 260 | 175 | 7 | 8 | 259 | 4 | 259 | 3.14e-14 | 71.2 |
MS.gene63492.t1 | MTR_8g089575 | 28.241 | 216 | 144 | 5 | 19 | 227 | 47 | 258 | 3.88e-14 | 71.6 |
MS.gene63492.t1 | MTR_3g068075 | 51.471 | 68 | 32 | 1 | 125 | 191 | 1 | 68 | 5.63e-14 | 66.2 |
MS.gene63492.t1 | MTR_1g051165 | 26.236 | 263 | 178 | 10 | 17 | 265 | 14 | 274 | 7.47e-14 | 70.5 |
MS.gene63492.t1 | MTR_6g023950 | 28.205 | 273 | 166 | 9 | 5 | 261 | 3 | 261 | 9.40e-14 | 69.7 |
MS.gene63492.t1 | MTR_7g105590 | 28.495 | 186 | 126 | 5 | 17 | 199 | 8 | 189 | 9.60e-14 | 68.6 |
MS.gene63492.t1 | MTR_7g110130 | 27.547 | 265 | 169 | 7 | 12 | 263 | 1 | 255 | 1.60e-13 | 69.3 |
MS.gene63492.t1 | MTR_7g110160 | 28.302 | 265 | 148 | 6 | 12 | 263 | 1 | 236 | 4.52e-13 | 67.8 |
MS.gene63492.t1 | MTR_6g023600 | 29.104 | 268 | 170 | 10 | 5 | 261 | 3 | 261 | 3.00e-12 | 65.5 |
MS.gene63492.t1 | MTR_7g080410 | 26.289 | 194 | 135 | 5 | 17 | 204 | 38 | 229 | 4.27e-12 | 65.5 |
MS.gene63492.t1 | MTR_7g080410 | 26.289 | 194 | 135 | 5 | 17 | 204 | 38 | 229 | 6.06e-12 | 65.1 |
MS.gene63492.t1 | MTR_6g041980 | 27.843 | 255 | 152 | 8 | 17 | 252 | 64 | 305 | 2.18e-11 | 63.5 |
MS.gene63492.t1 | MTR_4g134660 | 29.231 | 195 | 126 | 5 | 20 | 207 | 9 | 198 | 9.89e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63492.t1 | AT5G06060 | 67.442 | 258 | 84 | 0 | 14 | 271 | 6 | 263 | 9.65e-134 | 379 |
MS.gene63492.t1 | AT1G07440 | 64.591 | 257 | 88 | 2 | 14 | 268 | 9 | 264 | 2.11e-122 | 350 |
MS.gene63492.t1 | AT2G29260 | 61.961 | 255 | 97 | 0 | 14 | 268 | 65 | 319 | 2.74e-119 | 344 |
MS.gene63492.t1 | AT2G29290 | 63.035 | 257 | 93 | 1 | 14 | 268 | 4 | 260 | 2.55e-118 | 340 |
MS.gene63492.t1 | AT2G29340 | 61.776 | 259 | 97 | 1 | 14 | 270 | 4 | 262 | 5.36e-118 | 339 |
MS.gene63492.t1 | AT2G29340 | 62.257 | 257 | 95 | 1 | 14 | 268 | 4 | 260 | 2.18e-117 | 339 |
MS.gene63492.t1 | AT1G07450 | 61.176 | 255 | 98 | 1 | 12 | 266 | 3 | 256 | 5.58e-114 | 328 |
MS.gene63492.t1 | AT2G29330 | 62.257 | 257 | 95 | 1 | 14 | 268 | 4 | 260 | 6.22e-114 | 328 |
MS.gene63492.t1 | AT2G29360 | 61.265 | 253 | 98 | 0 | 14 | 266 | 13 | 265 | 1.69e-113 | 328 |
MS.gene63492.t1 | AT2G30670 | 60.870 | 253 | 99 | 0 | 14 | 266 | 4 | 256 | 2.36e-112 | 324 |
MS.gene63492.t1 | AT2G29320 | 61.868 | 257 | 95 | 2 | 15 | 268 | 11 | 267 | 3.53e-112 | 324 |
MS.gene63492.t1 | AT2G29350 | 60.630 | 254 | 99 | 1 | 13 | 266 | 11 | 263 | 7.34e-112 | 323 |
MS.gene63492.t1 | AT2G29150 | 59.073 | 259 | 105 | 1 | 8 | 266 | 7 | 264 | 1.59e-111 | 323 |
MS.gene63492.t1 | AT2G29310 | 59.289 | 253 | 103 | 0 | 14 | 266 | 4 | 256 | 1.90e-109 | 317 |
MS.gene63492.t1 | AT2G29300 | 59.302 | 258 | 102 | 2 | 14 | 268 | 4 | 261 | 3.91e-109 | 316 |
MS.gene63492.t1 | AT2G29370 | 58.893 | 253 | 104 | 0 | 14 | 266 | 13 | 265 | 3.17e-108 | 314 |
MS.gene63492.t1 | AT2G29290 | 61.765 | 238 | 89 | 1 | 33 | 268 | 6 | 243 | 4.16e-106 | 308 |
MS.gene63492.t1 | AT2G29300 | 59.200 | 250 | 101 | 1 | 14 | 262 | 4 | 253 | 1.08e-105 | 308 |
MS.gene63492.t1 | AT2G29320 | 61.088 | 239 | 90 | 2 | 33 | 268 | 11 | 249 | 5.52e-102 | 298 |
MS.gene63492.t1 | AT2G29310 | 58.120 | 234 | 98 | 0 | 33 | 266 | 21 | 254 | 2.45e-97 | 286 |
MS.gene63492.t1 | AT2G29350 | 59.556 | 225 | 90 | 1 | 42 | 266 | 2 | 225 | 2.17e-96 | 283 |
MS.gene63492.t1 | AT2G29340 | 59.091 | 198 | 81 | 0 | 14 | 211 | 4 | 201 | 3.32e-85 | 253 |
MS.gene63492.t1 | AT2G29340 | 59.091 | 198 | 81 | 0 | 14 | 211 | 4 | 201 | 3.32e-85 | 253 |
MS.gene63492.t1 | AT2G29350 | 61.340 | 194 | 75 | 0 | 13 | 206 | 11 | 204 | 9.40e-84 | 250 |
MS.gene63492.t1 | AT2G29320 | 60.733 | 191 | 74 | 1 | 15 | 204 | 11 | 201 | 2.43e-80 | 241 |
MS.gene63492.t1 | AT2G29310 | 57.576 | 198 | 84 | 0 | 14 | 211 | 4 | 201 | 3.15e-80 | 241 |
MS.gene63492.t1 | AT1G07440 | 64.024 | 164 | 59 | 0 | 14 | 177 | 9 | 172 | 2.56e-74 | 224 |
MS.gene63492.t1 | AT2G29310 | 55.866 | 179 | 79 | 0 | 33 | 211 | 21 | 199 | 4.62e-68 | 209 |
MS.gene63492.t1 | AT2G29170 | 58.252 | 103 | 42 | 1 | 1 | 103 | 1 | 102 | 1.28e-36 | 126 |
MS.gene63492.t1 | AT4G05530 | 33.333 | 246 | 159 | 4 | 17 | 261 | 9 | 250 | 6.40e-33 | 121 |
MS.gene63492.t1 | AT5G18210 | 32.157 | 255 | 162 | 7 | 16 | 261 | 7 | 259 | 7.34e-29 | 110 |
MS.gene63492.t1 | AT3G03980 | 30.370 | 270 | 167 | 8 | 7 | 260 | 4 | 268 | 1.33e-27 | 107 |
MS.gene63492.t1 | AT4G13180 | 32.046 | 259 | 164 | 8 | 13 | 263 | 9 | 263 | 1.57e-27 | 107 |
MS.gene63492.t1 | AT3G04000 | 31.939 | 263 | 153 | 9 | 17 | 260 | 14 | 269 | 9.08e-25 | 100 |
MS.gene63492.t1 | AT5G18210 | 32.068 | 237 | 150 | 7 | 16 | 243 | 7 | 241 | 1.47e-24 | 99.8 |
MS.gene63492.t1 | AT1G24360 | 28.455 | 246 | 165 | 5 | 23 | 263 | 80 | 319 | 1.88e-23 | 97.4 |
MS.gene63492.t1 | AT3G55290 | 28.736 | 261 | 169 | 9 | 17 | 265 | 18 | 273 | 1.14e-22 | 94.7 |
MS.gene63492.t1 | AT3G55290 | 28.736 | 261 | 169 | 9 | 17 | 265 | 17 | 272 | 1.23e-22 | 94.7 |
MS.gene63492.t1 | AT3G26760 | 28.897 | 263 | 170 | 6 | 13 | 262 | 32 | 290 | 2.90e-22 | 94.0 |
MS.gene63492.t1 | AT3G55310 | 28.295 | 258 | 174 | 8 | 17 | 265 | 17 | 272 | 8.57e-22 | 92.4 |
MS.gene63492.t1 | AT1G54870 | 31.008 | 258 | 165 | 7 | 17 | 265 | 84 | 337 | 9.95e-22 | 93.2 |
MS.gene63492.t1 | AT1G54870 | 31.008 | 258 | 165 | 7 | 17 | 265 | 82 | 335 | 1.05e-21 | 93.2 |
MS.gene63492.t1 | AT1G63380 | 28.185 | 259 | 174 | 8 | 17 | 265 | 19 | 275 | 1.48e-21 | 91.7 |
MS.gene63492.t1 | AT1G63380 | 28.185 | 259 | 174 | 8 | 17 | 265 | 17 | 273 | 1.53e-21 | 91.7 |
MS.gene63492.t1 | AT1G63380 | 28.185 | 259 | 174 | 8 | 17 | 265 | 15 | 271 | 1.56e-21 | 91.7 |
MS.gene63492.t1 | AT1G63380 | 28.185 | 259 | 174 | 8 | 17 | 265 | 22 | 278 | 1.74e-21 | 91.7 |
MS.gene63492.t1 | AT1G62610 | 27.413 | 259 | 176 | 8 | 17 | 265 | 13 | 269 | 3.16e-21 | 90.9 |
MS.gene63492.t1 | AT1G62610 | 27.413 | 259 | 176 | 8 | 17 | 265 | 19 | 275 | 3.24e-21 | 90.9 |
MS.gene63492.t1 | AT1G62610 | 27.413 | 259 | 176 | 8 | 17 | 265 | 15 | 271 | 3.40e-21 | 90.9 |
MS.gene63492.t1 | AT1G62610 | 27.413 | 259 | 176 | 8 | 17 | 265 | 14 | 270 | 3.71e-21 | 90.5 |
MS.gene63492.t1 | AT3G46170 | 27.907 | 258 | 175 | 8 | 17 | 265 | 26 | 281 | 3.71e-21 | 90.9 |
MS.gene63492.t1 | AT3G51680 | 28.571 | 266 | 168 | 7 | 17 | 262 | 32 | 295 | 1.81e-20 | 89.4 |
MS.gene63492.t1 | AT3G12800 | 27.586 | 261 | 165 | 8 | 17 | 261 | 10 | 262 | 2.79e-19 | 85.9 |
MS.gene63492.t1 | AT3G05260 | 30.797 | 276 | 172 | 11 | 1 | 264 | 20 | 288 | 4.51e-19 | 85.1 |
MS.gene63492.t1 | AT2G17845 | 26.136 | 264 | 177 | 10 | 17 | 266 | 47 | 306 | 5.02e-17 | 79.7 |
MS.gene63492.t1 | AT2G47120 | 28.788 | 264 | 176 | 10 | 10 | 269 | 2 | 257 | 5.44e-17 | 79.0 |
MS.gene63492.t1 | AT2G47120 | 28.244 | 262 | 178 | 9 | 12 | 269 | 1 | 256 | 1.03e-16 | 78.2 |
MS.gene63492.t1 | AT2G47130 | 27.027 | 259 | 176 | 8 | 12 | 263 | 1 | 253 | 7.59e-15 | 72.8 |
MS.gene63492.t1 | AT3G47350 | 29.858 | 211 | 137 | 6 | 19 | 224 | 46 | 250 | 4.32e-14 | 71.6 |
MS.gene63492.t1 | AT3G47350 | 29.858 | 211 | 137 | 6 | 19 | 224 | 46 | 250 | 5.22e-14 | 71.2 |
MS.gene63492.t1 | AT3G42960 | 27.376 | 263 | 159 | 8 | 20 | 262 | 11 | 261 | 5.59e-14 | 70.5 |
MS.gene63492.t1 | AT3G26770 | 26.894 | 264 | 175 | 7 | 17 | 266 | 41 | 300 | 9.16e-14 | 70.5 |
MS.gene63492.t1 | AT3G03330 | 27.451 | 204 | 139 | 5 | 8 | 204 | 32 | 233 | 1.68e-13 | 69.7 |
MS.gene63492.t1 | AT1G52340 | 29.008 | 262 | 166 | 8 | 17 | 262 | 18 | 275 | 2.13e-13 | 68.9 |
MS.gene63492.t1 | AT3G06060 | 27.228 | 202 | 138 | 3 | 17 | 214 | 37 | 233 | 2.43e-13 | 69.3 |
MS.gene63492.t1 | AT3G06060 | 27.228 | 202 | 138 | 3 | 17 | 214 | 54 | 250 | 2.54e-13 | 69.3 |
MS.gene63492.t1 | AT3G47360 | 31.088 | 193 | 120 | 7 | 20 | 206 | 48 | 233 | 1.20e-12 | 67.0 |
MS.gene63492.t1 | AT1G67730 | 30.653 | 199 | 125 | 6 | 19 | 208 | 51 | 245 | 4.30e-12 | 65.5 |
MS.gene63492.t1 | AT5G10050 | 26.984 | 252 | 153 | 8 | 23 | 253 | 11 | 252 | 1.51e-11 | 63.5 |
MS.gene63492.t1 | AT3G03350 | 30.857 | 175 | 103 | 4 | 34 | 204 | 192 | 352 | 3.33e-11 | 63.2 |
MS.gene63492.t1 | AT5G65205 | 29.775 | 178 | 118 | 4 | 23 | 199 | 12 | 183 | 7.44e-11 | 61.6 |
Find 67 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAAGCTCTGATTGGTTTC+TGG | 0.151861 | 3.1:-56451456 | None:intergenic |
GTATTCATTTCCTCTATTGC+TGG | 0.292460 | 3.1:+56452399 | MS.gene63492:CDS |
TGAAGTATATTCAGAAATTA+TGG | 0.318877 | 3.1:+56452299 | MS.gene63492:CDS |
ATATTATGTTATTCTCATAC+TGG | 0.336425 | 3.1:-56454048 | None:intergenic |
GCTTCGCAACAAGCAATATA+TGG | 0.337614 | 3.1:+56453875 | MS.gene63492:CDS |
ATCAGAGCTTAATAATTGTT+TGG | 0.343122 | 3.1:+56451466 | MS.gene63492:CDS |
TTAATAATTGTTTGGATCAA+TGG | 0.343384 | 3.1:+56451474 | MS.gene63492:CDS |
GGACAAGTTATTTGTGTTGA+TGG | 0.347587 | 3.1:+56453999 | MS.gene63492:CDS |
ACGGGTGGAACTCGTGGGAT+TGG | 0.352277 | 3.1:+56451282 | MS.gene63492:CDS |
AACAATTATTAAGCTCTGAT+TGG | 0.364599 | 3.1:-56451463 | None:intergenic |
CGAGAGCAGTCTTTCCTTTG+AGG | 0.365572 | 3.1:-56451257 | None:intergenic |
ACAATGTTGGAGCAAACTTT+AGG | 0.371504 | 3.1:+56452253 | MS.gene63492:CDS |
CCCACATAAATCCTCAACTA+TGG | 0.394568 | 3.1:-56451408 | None:intergenic |
GTTGAGGATTTATGTGGGTT+TGG | 0.399628 | 3.1:+56451413 | MS.gene63492:CDS |
CGGGTGGAACTCGTGGGATT+GGG | 0.415063 | 3.1:+56451283 | MS.gene63492:CDS |
CATCCTCTTCTAAAGGCATC+TGG | 0.416244 | 3.1:+56452363 | MS.gene63492:CDS |
CTCGTCACGGGTGGAACTCG+TGG | 0.454557 | 3.1:+56451276 | MS.gene63492:CDS |
CTTCTAAAGGCATCTGGAAT+GGG | 0.459395 | 3.1:+56452369 | MS.gene63492:CDS |
ATTGCTGGTGTGGTGAGCTT+AGG | 0.459739 | 3.1:+56452414 | MS.gene63492:CDS |
ATGTTGTCTCGAACTCCTCT+TGG | 0.462026 | 3.1:+56453903 | MS.gene63492:CDS |
GATGGAGGATTAACTGTGAA+TGG | 0.465243 | 3.1:+56454017 | MS.gene63492:CDS |
TCATGAAGTTTCGTCGTTGG+TGG | 0.470167 | 3.1:+56453941 | MS.gene63492:CDS |
GCTCACCACACCAGCAATAG+AGG | 0.474512 | 3.1:-56452409 | None:intergenic |
CATTTCCTCTATTGCTGGTG+TGG | 0.475178 | 3.1:+56452404 | MS.gene63492:CDS |
GCCATAGTTGAGGATTTATG+TGG | 0.477068 | 3.1:+56451407 | MS.gene63492:CDS |
TCTTCTAAAGGCATCTGGAA+TGG | 0.496159 | 3.1:+56452368 | MS.gene63492:CDS |
ATCAACACAAATAACTTGTC+CGG | 0.496880 | 3.1:-56453997 | None:intergenic |
ATGTTCAACAAGTGGTGTAT+TGG | 0.502929 | 3.1:-56452656 | None:intergenic |
GAGAGCAGTCTTTCCTTTGA+GGG | 0.504170 | 3.1:-56451256 | None:intergenic |
ATCTCATGAAGTTTCGTCGT+TGG | 0.509818 | 3.1:+56453938 | MS.gene63492:CDS |
TTGGATCAATGGCGTAGTAA+AGG | 0.511663 | 3.1:+56451485 | MS.gene63492:CDS |
AAGTTTACCATTGAAGATTG+AGG | 0.513669 | 3.1:-56451579 | None:intergenic |
AGTGGTGTATTGGTGGTAGC+AGG | 0.515667 | 3.1:-56452646 | None:intergenic |
GAAGTTGCCTCAATCTTCAA+TGG | 0.519512 | 3.1:+56451572 | MS.gene63492:CDS |
TCATCACAGGTGAACAATGT+TGG | 0.527616 | 3.1:+56452240 | MS.gene63492:intron |
GGTGTGGTGAGCTTAGGTAC+TGG | 0.529304 | 3.1:+56452420 | MS.gene63492:CDS |
GTTGAAGAGTACAGTTCCAA+TGG | 0.529689 | 3.1:+56451219 | MS.gene63492:CDS |
AATGGGCAAAAGATGGCATA+AGG | 0.531839 | 3.1:+56452608 | MS.gene63492:CDS |
GGAAAGACTGCTCTCGTCAC+GGG | 0.534561 | 3.1:+56451264 | MS.gene63492:CDS |
GCTTGTGAATGGGCAAAAGA+TGG | 0.538164 | 3.1:+56452601 | MS.gene63492:CDS |
TTAGAAGAGGATGTGTAAGT+TGG | 0.538432 | 3.1:-56452353 | None:intergenic |
ATTCCAGATGCCTTTAGAAG+AGG | 0.541302 | 3.1:-56452366 | None:intergenic |
TCAGCAGTGTACTCAATGGT+TGG | 0.544375 | 3.1:-56452279 | None:intergenic |
ACTTACACATCCTCTTCTAA+AGG | 0.547336 | 3.1:+56452356 | MS.gene63492:CDS |
TGTGTCATCTCGAGAACAAA+GGG | 0.548123 | 3.1:+56451535 | MS.gene63492:CDS |
CAAGTTATTTGTGTTGATGG+AGG | 0.549415 | 3.1:+56454002 | MS.gene63492:CDS |
TTTCAGACATGCCATAGTTG+AGG | 0.554979 | 3.1:+56451397 | MS.gene63492:intron |
AGGAAAGACTGCTCTCGTCA+CGG | 0.557717 | 3.1:+56451263 | MS.gene63492:CDS |
TCAGTCTATGCAGCAAGTAA+AGG | 0.558042 | 3.1:+56452444 | MS.gene63492:CDS |
GGACCATCTTGAGACTCCAT+TGG | 0.559811 | 3.1:-56451235 | None:intergenic |
AACATTACATGTTCAACAAG+TGG | 0.561131 | 3.1:-56452664 | None:intergenic |
TACTTCAGCAGTGTACTCAA+TGG | 0.562176 | 3.1:-56452283 | None:intergenic |
TATTATGTTATTCTCATACT+GGG | 0.566252 | 3.1:-56454047 | None:intergenic |
GTCTCAAGATGGTCCCTCAA+AGG | 0.567774 | 3.1:+56451243 | MS.gene63492:CDS |
TTCAACAAGTGGTGTATTGG+TGG | 0.587074 | 3.1:-56452653 | None:intergenic |
CCAGCTGCGTCTTACATCAC+CGG | 0.589405 | 3.1:+56453978 | MS.gene63492:CDS |
CCGGTGATGTAAGACGCAGC+TGG | 0.590374 | 3.1:-56453978 | None:intergenic |
GTTCCAATGGAGTCTCAAGA+TGG | 0.594672 | 3.1:+56451232 | MS.gene63492:CDS |
TCGTCACGGGTGGAACTCGT+GGG | 0.601801 | 3.1:+56451277 | MS.gene63492:CDS |
ATGTGTCATCTCGAGAACAA+AGG | 0.607640 | 3.1:+56451534 | MS.gene63492:CDS |
CCATAGTTGAGGATTTATGT+GGG | 0.612692 | 3.1:+56451408 | MS.gene63492:CDS |
ATTGGTTTCTGGAACAAGTG+TGG | 0.617496 | 3.1:-56451445 | None:intergenic |
AAGACGCAGCTGGCAGACAA+AGG | 0.618321 | 3.1:-56453968 | None:intergenic |
AAGACTGCTCTCGTCACGGG+TGG | 0.622343 | 3.1:+56451267 | MS.gene63492:CDS |
GATTCTGCGATGCGTCCAAG+AGG | 0.660666 | 3.1:-56453918 | None:intergenic |
GTTTCTGGAACAAGTGTGGA+CGG | 0.672033 | 3.1:-56451441 | None:intergenic |
TCTGGAACAAGTGTGGACGG+TGG | 0.739178 | 3.1:-56451438 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTCATAATATGAAATAAAA+GGG | - | chr3.1:56453034-56453053 | None:intergenic | 10.0% |
!! | CAAAATAAATGAATAAATAA+AGG | - | chr3.1:56452697-56452716 | None:intergenic | 10.0% |
!! | TATTCATAATATGAAATAAA+AGG | - | chr3.1:56453035-56453054 | None:intergenic | 10.0% |
!! | TTTAGTATTAAATTTATTAG+TGG | + | chr3.1:56453096-56453115 | MS.gene63492:intron | 10.0% |
!!! | ATTAAAACACATTATTTTAA+TGG | + | chr3.1:56451850-56451869 | MS.gene63492:intron | 10.0% |
!!! | CTTTATTTATTCATTTATTT+TGG | + | chr3.1:56452695-56452714 | MS.gene63492:intron | 10.0% |
!!! | TTAAAACACATTATTTTAAT+GGG | + | chr3.1:56451851-56451870 | MS.gene63492:intron | 10.0% |
!!! | TTTTATGATGAATTTATAAA+CGG | + | chr3.1:56453344-56453363 | MS.gene63492:intron | 10.0% |
!! | TTGTACTATTTGTATATAAT+TGG | + | chr3.1:56452983-56453002 | MS.gene63492:intron | 15.0% |
!! | TTTATGATGAATTTATAAAC+GGG | + | chr3.1:56453345-56453364 | MS.gene63492:intron | 15.0% |
!! | ATCAAAAATGTTGTATCATT+AGG | - | chr3.1:56453781-56453800 | None:intergenic | 20.0% |
!! | ATGTGTAAAATCTATTTACA+CGG | + | chr3.1:56452069-56452088 | MS.gene63492:intron | 20.0% |
!! | CATAATTCAAATTGAAAGAA+AGG | - | chr3.1:56451338-56451357 | None:intergenic | 20.0% |
!! | CTTTCTTTCAATTTGAATTA+TGG | + | chr3.1:56451336-56451355 | MS.gene63492:intron | 20.0% |
!! | TGAAGTATATTCAGAAATTA+TGG | + | chr3.1:56452299-56452318 | MS.gene63492:CDS | 20.0% |
!! | TTAATAATTGTTTGGATCAA+TGG | + | chr3.1:56451474-56451493 | MS.gene63492:CDS | 20.0% |
!! | TTAGACAAAATTAGAAACTT+TGG | - | chr3.1:56451364-56451383 | None:intergenic | 20.0% |
!! | TTGTTATGATACTATATGAT+TGG | - | chr3.1:56451984-56452003 | None:intergenic | 20.0% |
!! | TTTGAAGAAATAAACTTTGT+TGG | - | chr3.1:56453285-56453304 | None:intergenic | 20.0% |
!!! | GTTATTGTTTTACTATTGAT+AGG | - | chr3.1:56452963-56452982 | None:intergenic | 20.0% |
! | AATTATAGTACATTGTAGAG+AGG | + | chr3.1:56452170-56452189 | MS.gene63492:intron | 25.0% |
! | AGTTGAACAAGTAATTAGTA+TGG | - | chr3.1:56452488-56452507 | None:intergenic | 25.0% |
! | ATCAGAGCTTAATAATTGTT+TGG | + | chr3.1:56451466-56451485 | MS.gene63492:CDS | 25.0% |
! | GATTTATGTTGGAGAAAAAT+AGG | + | chr3.1:56452783-56452802 | MS.gene63492:intron | 25.0% |
! | GTTAGTTAAAAGCTATTTAC+CGG | + | chr3.1:56451642-56451661 | MS.gene63492:intron | 25.0% |
! | GTTCATCTGCATTATAAATA+GGG | - | chr3.1:56453683-56453702 | None:intergenic | 25.0% |
! | TAGGTCAAAGATAATATAGT+TGG | + | chr3.1:56452802-56452821 | MS.gene63492:intron | 25.0% |
! | TGCATTATAAATAGGGAAAA+AGG | - | chr3.1:56453676-56453695 | None:intergenic | 25.0% |
! | TGTTCATCTGCATTATAAAT+AGG | - | chr3.1:56453684-56453703 | None:intergenic | 25.0% |
!! | AACAATTATTAAGCTCTGAT+TGG | - | chr3.1:56451466-56451485 | None:intergenic | 25.0% |
!!! | AAAAAATTTGGCTTGTGAAT+GGG | + | chr3.1:56452591-56452610 | MS.gene63492:CDS | 25.0% |
AACATTACATGTTCAACAAG+TGG | - | chr3.1:56452667-56452686 | None:intergenic | 30.0% | |
AACTTGACTTAAAGTTGCTA+TGG | + | chr3.1:56453703-56453722 | MS.gene63492:intron | 30.0% | |
AAGTAATAATAGAGGATTGG+AGG | - | chr3.1:56453562-56453581 | None:intergenic | 30.0% | |
AAGTTTACCATTGAAGATTG+AGG | - | chr3.1:56451582-56451601 | None:intergenic | 30.0% | |
CACAAGTAATAATAGAGGAT+TGG | - | chr3.1:56453565-56453584 | None:intergenic | 30.0% | |
CACTACACAAGTAATAATAG+AGG | - | chr3.1:56453570-56453589 | None:intergenic | 30.0% | |
CACTCAGCTTACAAAAAATT+TGG | + | chr3.1:56452579-56452598 | MS.gene63492:CDS | 30.0% | |
CTAAAGACACCAAATAGTAA+AGG | - | chr3.1:56451821-56451840 | None:intergenic | 30.0% | |
CTCTAGATTGAATCTAAACA+TGG | + | chr3.1:56453218-56453237 | MS.gene63492:intron | 30.0% | |
GACACAGTGTATACAAAATT+AGG | - | chr3.1:56453616-56453635 | None:intergenic | 30.0% | |
TATCTATGCCAAGATATAGA+CGG | - | chr3.1:56452203-56452222 | None:intergenic | 30.0% | |
! | AATTTTGTATACACTGTGTC+TGG | + | chr3.1:56453616-56453635 | MS.gene63492:intron | 30.0% |
! | ATCAACACAAATAACTTGTC+CGG | - | chr3.1:56454000-56454019 | None:intergenic | 30.0% |
! | ATGTCTGAAATTGAACAACA+TGG | - | chr3.1:56451387-56451406 | None:intergenic | 30.0% |
! | GACAAAAAAGTGTAGCTATT+TGG | - | chr3.1:56453810-56453829 | None:intergenic | 30.0% |
! | GGCAATTTATGATTTTTGTG+TGG | + | chr3.1:56453366-56453385 | MS.gene63492:intron | 30.0% |
! | TCAACTTGCTTGTAGTAAAA+GGG | + | chr3.1:56452502-56452521 | MS.gene63492:intron | 30.0% |
! | TTCAACTTGCTTGTAGTAAA+AGG | + | chr3.1:56452501-56452520 | MS.gene63492:intron | 30.0% |
!! | CAAAAAATTTGGCTTGTGAA+TGG | + | chr3.1:56452590-56452609 | MS.gene63492:CDS | 30.0% |
!! | CTTTACTATTTGGTGTCTTT+AGG | + | chr3.1:56451819-56451838 | MS.gene63492:intron | 30.0% |
AAGACACCAAATAGTAAAGG+TGG | - | chr3.1:56451818-56451837 | None:intergenic | 35.0% | |
AATAATAGAGGATTGGAGGA+TGG | - | chr3.1:56453558-56453577 | None:intergenic | 35.0% | |
AATCGTCCACCTTTACTATT+TGG | + | chr3.1:56451809-56451828 | MS.gene63492:intron | 35.0% | |
ACAATGTTGGAGCAAACTTT+AGG | + | chr3.1:56452253-56452272 | MS.gene63492:CDS | 35.0% | |
ACCTTTCTAACGTTTAATGC+CGG | - | chr3.1:56451664-56451683 | None:intergenic | 35.0% | |
ACTTACACATCCTCTTCTAA+AGG | + | chr3.1:56452356-56452375 | MS.gene63492:CDS | 35.0% | |
ATGTTCAACAAGTGGTGTAT+TGG | - | chr3.1:56452659-56452678 | None:intergenic | 35.0% | |
ATTGCAGCTGAAAACATCAT+TGG | - | chr3.1:56452559-56452578 | None:intergenic | 35.0% | |
CCATAGTTGAGGATTTATGT+GGG | + | chr3.1:56451408-56451427 | MS.gene63492:CDS | 35.0% | |
CTCAAACAGATGTACTAAGA+GGG | + | chr3.1:56453526-56453545 | MS.gene63492:intron | 35.0% | |
CTGATATCAGTGTCTATACT+AGG | + | chr3.1:56451781-56451800 | MS.gene63492:intron | 35.0% | |
GATCCTACTGAGATTTATGT+TGG | + | chr3.1:56452772-56452791 | MS.gene63492:intron | 35.0% | |
GCAAGATATTTGTGAAACAG+AGG | - | chr3.1:56453322-56453341 | None:intergenic | 35.0% | |
GGACAAGTTATTTGTGTTGA+TGG | + | chr3.1:56453999-56454018 | MS.gene63492:CDS | 35.0% | |
GTATTCATTTCCTCTATTGC+TGG | + | chr3.1:56452399-56452418 | MS.gene63492:CDS | 35.0% | |
GTTTCATACCGTCTATATCT+TGG | + | chr3.1:56452192-56452211 | MS.gene63492:intron | 35.0% | |
TAGATCTCTGTTGTCAAAAG+CGG | + | chr3.1:56452839-56452858 | MS.gene63492:intron | 35.0% | |
TAGGAATACAAAAGTTCAGC+AGG | - | chr3.1:56453762-56453781 | None:intergenic | 35.0% | |
TCTCAAACAGATGTACTAAG+AGG | + | chr3.1:56453525-56453544 | MS.gene63492:intron | 35.0% | |
TCTCCAACATAAATCTCAGT+AGG | - | chr3.1:56452778-56452797 | None:intergenic | 35.0% | |
TGTTTGATTGATCTCATCAC+AGG | + | chr3.1:56452227-56452246 | MS.gene63492:intron | 35.0% | |
TTAATGGGAGAGAGAATGAT+CGG | + | chr3.1:56451866-56451885 | MS.gene63492:intron | 35.0% | |
TTAGAAGAGGATGTGTAAGT+TGG | - | chr3.1:56452356-56452375 | None:intergenic | 35.0% | |
! | AGATTGTGCTCAACATTTTG+AGG | + | chr3.1:56453496-56453515 | MS.gene63492:intron | 35.0% |
! | CAAGTTATTTGTGTTGATGG+AGG | + | chr3.1:56454002-56454021 | MS.gene63492:CDS | 35.0% |
! | GAGTTAGTTGCATTCCTTTT+GGG | + | chr3.1:56452717-56452736 | MS.gene63492:intron | 35.0% |
! | TAAACGTTAGAAAGGTGTGT+CGG | + | chr3.1:56451668-56451687 | MS.gene63492:intron | 35.0% |
! | TAAGAGAGAGATCGATTCAA+AGG | + | chr3.1:56451890-56451909 | MS.gene63492:intron | 35.0% |
!! | ATTAAGCTCTGATTGGTTTC+TGG | - | chr3.1:56451459-56451478 | None:intergenic | 35.0% |
!!! | AGTAAAGGCTTTTTGGTTTC+TGG | + | chr3.1:56451500-56451519 | MS.gene63492:CDS | 35.0% |
AATGGGCAAAAGATGGCATA+AGG | + | chr3.1:56452608-56452627 | MS.gene63492:CDS | 40.0% | |
ACCGGCATTAAACGTTAGAA+AGG | + | chr3.1:56451660-56451679 | MS.gene63492:intron | 40.0% | |
ACGTGTAACGAGCGTTATTT+CGG | - | chr3.1:56453130-56453149 | None:intergenic | 40.0% | |
ATCTCATGAAGTTTCGTCGT+TGG | + | chr3.1:56453938-56453957 | MS.gene63492:CDS | 40.0% | |
ATGTGTCATCTCGAGAACAA+AGG | + | chr3.1:56451534-56451553 | MS.gene63492:CDS | 40.0% | |
CATTGAATCCTTCACCCAAA+AGG | - | chr3.1:56452734-56452753 | None:intergenic | 40.0% | |
CCCACATAAATCCTCAACTA+TGG | - | chr3.1:56451411-56451430 | None:intergenic | 40.0% | |
GAAGTTGCCTCAATCTTCAA+TGG | + | chr3.1:56451572-56451591 | MS.gene63492:CDS | 40.0% | |
GATGGAGGATTAACTGTGAA+TGG | + | chr3.1:56454017-56454036 | MS.gene63492:CDS | 40.0% | |
GCCATAGTTGAGGATTTATG+TGG | + | chr3.1:56451407-56451426 | MS.gene63492:CDS | 40.0% | |
GCTTCGCAACAAGCAATATA+TGG | + | chr3.1:56453875-56453894 | MS.gene63492:CDS | 40.0% | |
GTTGAGGATTTATGTGGGTT+TGG | + | chr3.1:56451413-56451432 | MS.gene63492:CDS | 40.0% | |
TACTTCAGCAGTGTACTCAA+TGG | - | chr3.1:56452286-56452305 | None:intergenic | 40.0% | |
TCAGTCTATGCAGCAAGTAA+AGG | + | chr3.1:56452444-56452463 | MS.gene63492:CDS | 40.0% | |
TCATCACAGGTGAACAATGT+TGG | + | chr3.1:56452240-56452259 | MS.gene63492:intron | 40.0% | |
TCTATGCAGCAAGTAAAGGT+AGG | + | chr3.1:56452448-56452467 | MS.gene63492:intron | 40.0% | |
TGGGTGAAGGATTCAATGAT+AGG | + | chr3.1:56452736-56452755 | MS.gene63492:intron | 40.0% | |
TGTGTCATCTCGAGAACAAA+GGG | + | chr3.1:56451535-56451554 | MS.gene63492:CDS | 40.0% | |
TTCAACAAGTGGTGTATTGG+TGG | - | chr3.1:56452656-56452675 | None:intergenic | 40.0% | |
TTGGATCAATGGCGTAGTAA+AGG | + | chr3.1:56451485-56451504 | MS.gene63492:CDS | 40.0% | |
TTTCAGACATGCCATAGTTG+AGG | + | chr3.1:56451397-56451416 | MS.gene63492:intron | 40.0% | |
! | AAACGTTAGAAAGGTGTGTC+GGG | + | chr3.1:56451669-56451688 | MS.gene63492:intron | 40.0% |
! | ATGGCGTAGTAAAGGCTTTT+TGG | + | chr3.1:56451493-56451512 | MS.gene63492:CDS | 40.0% |
! | ATTCCAGATGCCTTTAGAAG+AGG | - | chr3.1:56452369-56452388 | None:intergenic | 40.0% |
! | GGAGTTAGTTGCATTCCTTT+TGG | + | chr3.1:56452716-56452735 | MS.gene63492:intron | 40.0% |
! | GTTGAAGAGTACAGTTCCAA+TGG | + | chr3.1:56451219-56451238 | MS.gene63492:CDS | 40.0% |
!! | ATTGGTTTCTGGAACAAGTG+TGG | - | chr3.1:56451448-56451467 | None:intergenic | 40.0% |
!! | CTTCTAAAGGCATCTGGAAT+GGG | + | chr3.1:56452369-56452388 | MS.gene63492:CDS | 40.0% |
!! | TCTTCTAAAGGCATCTGGAA+TGG | + | chr3.1:56452368-56452387 | MS.gene63492:CDS | 40.0% |
AAGTGGAAAGCGGTCAAAAG+CGG | + | chr3.1:56452936-56452955 | MS.gene63492:intron | 45.0% | |
ATGTTGTCTCGAACTCCTCT+TGG | + | chr3.1:56453903-56453922 | MS.gene63492:CDS | 45.0% | |
CATTTCCTCTATTGCTGGTG+TGG | + | chr3.1:56452404-56452423 | MS.gene63492:CDS | 45.0% | |
GAGAGCAGTCTTTCCTTTGA+GGG | - | chr3.1:56451259-56451278 | None:intergenic | 45.0% | |
GCTTGTGAATGGGCAAAAGA+TGG | + | chr3.1:56452601-56452620 | MS.gene63492:CDS | 45.0% | |
GGCATGGCCAACTCAAAAAT+TGG | - | chr3.1:56453170-56453189 | None:intergenic | 45.0% | |
GTCTTCATGTCTCAGCTCAT+TGG | + | chr3.1:56453404-56453423 | MS.gene63492:intron | 45.0% | |
GTTCCAATGGAGTCTCAAGA+TGG | + | chr3.1:56451232-56451251 | MS.gene63492:CDS | 45.0% | |
TCAGCAGTGTACTCAATGGT+TGG | - | chr3.1:56452282-56452301 | None:intergenic | 45.0% | |
TCATGAAGTTTCGTCGTTGG+TGG | + | chr3.1:56453941-56453960 | MS.gene63492:CDS | 45.0% | |
TGCATGTCAGAAGTGGAAAG+CGG | + | chr3.1:56452926-56452945 | MS.gene63492:intron | 45.0% | |
! | TGTAACGAGCGTTATTTCGG+TGG | - | chr3.1:56453127-56453146 | None:intergenic | 45.0% |
!! | CATCCTCTTCTAAAGGCATC+TGG | + | chr3.1:56452363-56452382 | MS.gene63492:CDS | 45.0% |
!! | GTTGCATTCCTTTTGGGTGA+AGG | + | chr3.1:56452723-56452742 | MS.gene63492:intron | 45.0% |
!! | GTTTCTGGAACAAGTGTGGA+CGG | - | chr3.1:56451444-56451463 | None:intergenic | 45.0% |
ACTCAAAAATTGGCGTGGCG+CGG | - | chr3.1:56453160-56453179 | None:intergenic | 50.0% | |
AGGAAAGACTGCTCTCGTCA+CGG | + | chr3.1:56451263-56451282 | MS.gene63492:CDS | 50.0% | |
ATTGCTGGTGTGGTGAGCTT+AGG | + | chr3.1:56452414-56452433 | MS.gene63492:CDS | 50.0% | |
CGAGAGCAGTCTTTCCTTTG+AGG | - | chr3.1:56451260-56451279 | None:intergenic | 50.0% | |
CTAGAGCTCTGCTGTCAATG+CGG | - | chr3.1:56453204-56453223 | None:intergenic | 50.0% | |
GGACCATCTTGAGACTCCAT+TGG | - | chr3.1:56451238-56451257 | None:intergenic | 50.0% | |
GGCCAACTCAAAAATTGGCG+TGG | - | chr3.1:56453165-56453184 | None:intergenic | 50.0% | |
GTCTCAAGATGGTCCCTCAA+AGG | + | chr3.1:56451243-56451262 | MS.gene63492:CDS | 50.0% | |
! | AGTGGTGTATTGGTGGTAGC+AGG | - | chr3.1:56452649-56452668 | None:intergenic | 50.0% |
!!! | CGCCACGCCAATTTTTGAGT+TGG | + | chr3.1:56453160-56453179 | MS.gene63492:intron | 50.0% |
AAGACGCAGCTGGCAGACAA+AGG | - | chr3.1:56453971-56453990 | None:intergenic | 55.0% | |
CCAGCTGCGTCTTACATCAC+CGG | + | chr3.1:56453978-56453997 | MS.gene63492:CDS | 55.0% | |
CTCAAAAATTGGCGTGGCGC+GGG | - | chr3.1:56453159-56453178 | None:intergenic | 55.0% | |
GATTCTGCGATGCGTCCAAG+AGG | - | chr3.1:56453921-56453940 | None:intergenic | 55.0% | |
GCTCACCACACCAGCAATAG+AGG | - | chr3.1:56452412-56452431 | None:intergenic | 55.0% | |
GGAAAGACTGCTCTCGTCAC+GGG | + | chr3.1:56451264-56451283 | MS.gene63492:CDS | 55.0% | |
GGTGTGGTGAGCTTAGGTAC+TGG | + | chr3.1:56452420-56452439 | MS.gene63492:CDS | 55.0% | |
GTCAATGCGGAAATGCAGCG+CGG | - | chr3.1:56453191-56453210 | None:intergenic | 55.0% | |
! | GTGTCGGTGCATGTCAGAAG+TGG | + | chr3.1:56452919-56452938 | MS.gene63492:intron | 55.0% |
! | TCTGGAACAAGTGTGGACGG+TGG | - | chr3.1:56451441-56451460 | None:intergenic | 55.0% |
AAAATCAGGACCACCGCGCC+AGG | + | chr3.1:56452894-56452913 | MS.gene63492:intron | 60.0% | |
AAGACTGCTCTCGTCACGGG+TGG | + | chr3.1:56451267-56451286 | MS.gene63492:CDS | 60.0% | |
ACGGGTGGAACTCGTGGGAT+TGG | + | chr3.1:56451282-56451301 | MS.gene63492:CDS | 60.0% | |
CCGGTGATGTAAGACGCAGC+TGG | - | chr3.1:56453981-56454000 | None:intergenic | 60.0% | |
CGGGTGGAACTCGTGGGATT+GGG | + | chr3.1:56451283-56451302 | MS.gene63492:CDS | 60.0% | |
TCGTCACGGGTGGAACTCGT+GGG | + | chr3.1:56451277-56451296 | MS.gene63492:CDS | 60.0% | |
! | CGGAGCGTGGCGGAAAAATC+AGG | + | chr3.1:56452880-56452899 | MS.gene63492:intron | 60.0% |
! | TGACATGCACCGACACGTCC+TGG | - | chr3.1:56452915-56452934 | None:intergenic | 60.0% |
AAATTGGCGTGGCGCGGGAG+CGG | - | chr3.1:56453154-56453173 | None:intergenic | 65.0% | |
CTCGTCACGGGTGGAACTCG+TGG | + | chr3.1:56451276-56451295 | MS.gene63492:CDS | 65.0% | |
TCCGCCACGCTCCGCTATAG+CGG | - | chr3.1:56452874-56452893 | None:intergenic | 65.0% | |
TGCGGAAATGCAGCGCGGCA+TGG | - | chr3.1:56453186-56453205 | None:intergenic | 65.0% | |
AATTGGCGTGGCGCGGGAGC+GGG | - | chr3.1:56453153-56453172 | None:intergenic | 70.0% | |
ACCACCGCGCCAGGACGTGT+CGG | + | chr3.1:56452903-56452922 | MS.gene63492:intron | 70.0% | |
CCACGCTCCGCTATAGCGGC+TGG | - | chr3.1:56452870-56452889 | None:intergenic | 70.0% | |
GGCTGCGCCAGCCGCTATAG+CGG | + | chr3.1:56452860-56452879 | MS.gene63492:intron | 70.0% | |
! | CCAGCCGCTATAGCGGAGCG+TGG | + | chr3.1:56452867-56452886 | MS.gene63492:intron | 70.0% |
! | GCCGCTATAGCGGAGCGTGG+CGG | + | chr3.1:56452870-56452889 | MS.gene63492:intron | 70.0% |
! | TGCACCGACACGTCCTGGCG+CGG | - | chr3.1:56452910-56452929 | None:intergenic | 70.0% |
ACCGACACGTCCTGGCGCGG+TGG | - | chr3.1:56452907-56452926 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 56451210 | 56454067 | 56451210 | ID=MS.gene63492 |
chr3.1 | mRNA | 56451210 | 56454067 | 56451210 | ID=MS.gene63492.t1;Parent=MS.gene63492 |
chr3.1 | exon | 56451210 | 56451304 | 56451210 | ID=MS.gene63492.t1.exon1;Parent=MS.gene63492.t1 |
chr3.1 | CDS | 56451210 | 56451304 | 56451210 | ID=cds.MS.gene63492.t1;Parent=MS.gene63492.t1 |
chr3.1 | exon | 56451403 | 56451610 | 56451403 | ID=MS.gene63492.t1.exon2;Parent=MS.gene63492.t1 |
chr3.1 | CDS | 56451403 | 56451610 | 56451403 | ID=cds.MS.gene63492.t1;Parent=MS.gene63492.t1 |
chr3.1 | exon | 56452249 | 56452465 | 56452249 | ID=MS.gene63492.t1.exon3;Parent=MS.gene63492.t1 |
chr3.1 | CDS | 56452249 | 56452465 | 56452249 | ID=cds.MS.gene63492.t1;Parent=MS.gene63492.t1 |
chr3.1 | exon | 56452572 | 56452678 | 56452572 | ID=MS.gene63492.t1.exon4;Parent=MS.gene63492.t1 |
chr3.1 | CDS | 56452572 | 56452678 | 56452572 | ID=cds.MS.gene63492.t1;Parent=MS.gene63492.t1 |
chr3.1 | exon | 56453873 | 56454067 | 56453873 | ID=MS.gene63492.t1.exon5;Parent=MS.gene63492.t1 |
chr3.1 | CDS | 56453873 | 56454067 | 56453873 | ID=cds.MS.gene63492.t1;Parent=MS.gene63492.t1 |
Gene Sequence |
Protein sequence |