Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63495.t1 | XP_013460725.1 | 86.8 | 479 | 36 | 1 | 330 | 781 | 1 | 479 | 3.70E-216 | 761.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63495.t1 | Q5XET5 | 54.7 | 358 | 161 | 1 | 330 | 687 | 1 | 357 | 2.9e-108 | 394.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63495.t1 | A0A072UY73 | 86.8 | 479 | 36 | 1 | 330 | 781 | 1 | 479 | 2.7e-216 | 761.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene63495 | 0.831859 | 1.31E-55 | -1.69E-46 |
MS.gene050657 | MS.gene63495 | 0.810056 | 1.39E-50 | -1.69E-46 |
MS.gene051021 | MS.gene63495 | 0.800056 | 1.72E-48 | -1.69E-46 |
MS.gene051279 | MS.gene63495 | 0.8123 | 4.54E-51 | -1.69E-46 |
MS.gene051744 | MS.gene63495 | 0.81211 | 5.00E-51 | -1.69E-46 |
MS.gene052020 | MS.gene63495 | 0.800802 | 1.21E-48 | -1.69E-46 |
MS.gene052311 | MS.gene63495 | 0.80362 | 3.20E-49 | -1.69E-46 |
MS.gene052665 | MS.gene63495 | 0.818717 | 1.69E-52 | -1.69E-46 |
MS.gene053144 | MS.gene63495 | 0.838796 | 2.32E-57 | -1.69E-46 |
MS.gene054584 | MS.gene63495 | 0.859631 | 3.62E-63 | -1.69E-46 |
MS.gene056050 | MS.gene63495 | 0.810355 | 1.20E-50 | -1.69E-46 |
MS.gene059154 | MS.gene63495 | 0.832306 | 1.02E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63495.t1 | MTR_3g068215 | 90.605 | 479 | 18 | 1 | 330 | 781 | 1 | 479 | 0.0 | 892 |
MS.gene63495.t1 | MTR_3g068220 | 75.439 | 228 | 37 | 2 | 114 | 322 | 132 | 359 | 8.30e-111 | 342 |
MS.gene63495.t1 | MTR_6g011110 | 61.927 | 218 | 61 | 3 | 114 | 310 | 51 | 267 | 6.25e-86 | 273 |
MS.gene63495.t1 | MTR_6g088340 | 60.829 | 217 | 65 | 3 | 117 | 313 | 210 | 426 | 4.48e-78 | 258 |
MS.gene63495.t1 | MTR_6g088340 | 61.458 | 96 | 34 | 3 | 4 | 98 | 13 | 106 | 1.03e-24 | 108 |
MS.gene63495.t1 | MTR_6g091830 | 59.447 | 217 | 68 | 2 | 117 | 313 | 232 | 448 | 1.48e-77 | 258 |
MS.gene63495.t1 | MTR_6g091830 | 56.667 | 90 | 34 | 4 | 9 | 96 | 12 | 98 | 7.63e-17 | 84.3 |
MS.gene63495.t1 | MTR_6g092140 | 58.525 | 217 | 70 | 2 | 117 | 313 | 232 | 448 | 9.84e-76 | 253 |
MS.gene63495.t1 | MTR_6g092140 | 56.667 | 90 | 34 | 4 | 9 | 96 | 12 | 98 | 7.37e-17 | 84.3 |
MS.gene63495.t1 | MTR_3g086480 | 60.748 | 214 | 61 | 3 | 116 | 312 | 46 | 253 | 3.01e-75 | 244 |
MS.gene63495.t1 | MTR_3g006120 | 57.209 | 215 | 66 | 4 | 119 | 313 | 137 | 345 | 1.49e-64 | 219 |
MS.gene63495.t1 | MTR_3g006180 | 55.814 | 215 | 69 | 4 | 119 | 313 | 124 | 332 | 4.49e-64 | 218 |
MS.gene63495.t1 | MTR_4g133320 | 55.349 | 215 | 68 | 5 | 119 | 313 | 95 | 301 | 5.66e-64 | 216 |
MS.gene63495.t1 | MTR_4g133490 | 54.884 | 215 | 69 | 4 | 119 | 313 | 135 | 341 | 4.59e-63 | 215 |
MS.gene63495.t1 | MTR_3g006100 | 55.814 | 215 | 69 | 4 | 119 | 313 | 137 | 345 | 1.07e-62 | 214 |
MS.gene63495.t1 | MTR_3g006010 | 53.488 | 215 | 74 | 4 | 119 | 313 | 254 | 462 | 1.71e-60 | 212 |
MS.gene63495.t1 | MTR_3g006140 | 51.628 | 215 | 78 | 4 | 119 | 313 | 159 | 367 | 8.69e-60 | 207 |
MS.gene63495.t1 | MTR_1g109340 | 50.704 | 213 | 75 | 5 | 123 | 313 | 144 | 348 | 5.58e-54 | 191 |
MS.gene63495.t1 | MTR_3g045700 | 49.296 | 213 | 76 | 5 | 123 | 313 | 141 | 343 | 9.83e-51 | 181 |
MS.gene63495.t1 | MTR_7g083950 | 50.235 | 213 | 74 | 7 | 123 | 313 | 223 | 425 | 2.61e-49 | 180 |
MS.gene63495.t1 | MTR_7g070100 | 44.292 | 219 | 91 | 5 | 117 | 313 | 134 | 343 | 4.98e-45 | 166 |
MS.gene63495.t1 | MTR_1g100280 | 45.161 | 217 | 89 | 6 | 119 | 313 | 122 | 330 | 1.53e-43 | 161 |
MS.gene63495.t1 | MTR_6g091850 | 64.894 | 94 | 32 | 1 | 221 | 313 | 1 | 94 | 1.22e-37 | 136 |
MS.gene63495.t1 | MTR_3g097090 | 32.188 | 320 | 185 | 9 | 336 | 649 | 46 | 339 | 7.00e-37 | 147 |
MS.gene63495.t1 | MTR_3g085910 | 57.031 | 128 | 29 | 1 | 178 | 279 | 149 | 276 | 2.05e-36 | 139 |
MS.gene63495.t1 | MTR_1g109520 | 47.403 | 154 | 62 | 3 | 177 | 313 | 19 | 170 | 9.91e-32 | 122 |
MS.gene63495.t1 | MTR_1g089620 | 56.522 | 115 | 37 | 1 | 158 | 259 | 34 | 148 | 6.42e-31 | 123 |
MS.gene63495.t1 | MTR_3g097090 | 34.310 | 239 | 130 | 7 | 415 | 649 | 2 | 217 | 1.32e-30 | 126 |
MS.gene63495.t1 | MTR_3g097090 | 27.187 | 320 | 169 | 10 | 336 | 649 | 46 | 307 | 1.76e-20 | 96.3 |
MS.gene63495.t1 | MTR_8g033420 | 26.277 | 274 | 181 | 5 | 382 | 653 | 87 | 341 | 1.80e-19 | 91.7 |
MS.gene63495.t1 | MTR_1g012330 | 58.333 | 84 | 32 | 1 | 119 | 199 | 56 | 139 | 2.44e-19 | 89.0 |
MS.gene63495.t1 | MTR_1g093300 | 46.739 | 92 | 33 | 2 | 161 | 236 | 7 | 98 | 6.76e-15 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63495.t1 | AT2G39740 | 54.749 | 358 | 161 | 1 | 330 | 687 | 1 | 357 | 1.04e-130 | 399 |
MS.gene63495.t1 | AT2G39740 | 54.749 | 358 | 161 | 1 | 330 | 687 | 1 | 357 | 1.04e-130 | 399 |
MS.gene63495.t1 | AT2G39740 | 54.749 | 358 | 161 | 1 | 330 | 687 | 1 | 357 | 1.04e-130 | 399 |
MS.gene63495.t1 | AT3G45750 | 31.832 | 333 | 191 | 11 | 329 | 649 | 34 | 342 | 1.27e-33 | 138 |
MS.gene63495.t1 | AT3G45750 | 33.218 | 289 | 164 | 9 | 366 | 649 | 3 | 267 | 1.11e-30 | 128 |
MS.gene63495.t1 | AT3G45750 | 33.218 | 289 | 164 | 9 | 366 | 649 | 3 | 267 | 1.11e-30 | 128 |
MS.gene63495.t1 | AT3G45750 | 33.213 | 277 | 158 | 8 | 378 | 649 | 8 | 262 | 1.18e-30 | 128 |
MS.gene63495.t1 | AT3G45750 | 29.831 | 295 | 152 | 8 | 388 | 649 | 2 | 274 | 1.16e-24 | 110 |
MS.gene63495.t1 | AT3G45760 | 34.184 | 196 | 117 | 4 | 349 | 536 | 56 | 247 | 3.17e-24 | 107 |
MS.gene63495.t1 | AT3G45760 | 31.754 | 211 | 117 | 5 | 349 | 536 | 56 | 262 | 5.36e-21 | 97.4 |
MS.gene63495.t1 | AT2G45620 | 26.480 | 321 | 197 | 11 | 343 | 653 | 441 | 732 | 1.36e-19 | 94.4 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTTAAGATTAAATGTTTC+TGG | 0.128203 | 3.1:+56518997 | None:intergenic |
GTAGTTTACCTTCCCATTTC+TGG | 0.144575 | 3.1:+56517288 | None:intergenic |
GTTGATCCAAAGCAAGAATT+TGG | 0.179756 | 3.1:+56506720 | None:intergenic |
GAAATCTGGAAATGAGTTTC+TGG | 0.230036 | 3.1:-56519180 | MS.gene63495:CDS |
ATTTCAATCCAGTTATTAAA+TGG | 0.239451 | 3.1:-56507394 | MS.gene63495:CDS |
CAAACCATTGTCGTTACTAT+TGG | 0.241497 | 3.1:-56509717 | MS.gene63495:CDS |
GCAGGCCTGACATTATAATT+TGG | 0.250450 | 3.1:+56504635 | None:intergenic |
GCAGGCCTGACATTATAATT+TGG | 0.250450 | 3.1:+56504662 | None:intergenic |
TTTGGCTATGCCATTGGATT+TGG | 0.252709 | 3.1:+56504317 | None:intergenic |
TTATTAAATGGTTCCCATAT+TGG | 0.255975 | 3.1:-56507382 | MS.gene63495:CDS |
GAGTAACCTCCGTTGTAATT+TGG | 0.260290 | 3.1:+56504608 | None:intergenic |
ACGAATATTGCGTAAGTCTT+AGG | 0.260604 | 3.1:+56505032 | None:intergenic |
TTCTCCCAGCAGATCCAATA+TGG | 0.262095 | 3.1:+56507368 | None:intergenic |
GCCATTGGATTTGGAGCCTT+TGG | 0.273300 | 3.1:+56504326 | None:intergenic |
TATGGGAACCATTTAATAAC+TGG | 0.283717 | 3.1:+56507386 | None:intergenic |
ACTTGTAATCTTCCACCTTC+AGG | 0.329990 | 3.1:-56506495 | MS.gene63495:intron |
TGAAATCCAAATTCTTGCTT+TGG | 0.332807 | 3.1:-56506726 | MS.gene63495:CDS |
ACCTCCATGGCAAAGAAATC+TGG | 0.334524 | 3.1:-56519194 | None:intergenic |
TATATCAAGTTGGAAACTTT+GGG | 0.345001 | 3.1:-56516272 | MS.gene63495:CDS |
GGGGCAACTGTTGAACCATT+TGG | 0.345887 | 3.1:-56507460 | MS.gene63495:CDS |
TTCAGTGGTGGTAAAATTGC+AGG | 0.348532 | 3.1:+56505861 | None:intergenic |
TAGTTTACCTTCCCATTTCT+GGG | 0.353539 | 3.1:+56517289 | None:intergenic |
AATTCTTGCTTTGGATCAAC+AGG | 0.354600 | 3.1:-56506717 | MS.gene63495:CDS |
TTATATCAAGTTGGAAACTT+TGG | 0.370975 | 3.1:-56516273 | MS.gene63495:CDS |
AAACCATTGTCGTTACTATT+GGG | 0.372987 | 3.1:-56509716 | MS.gene63495:CDS |
TGAAAATGGCGCTGTGACTT+TGG | 0.373072 | 3.1:+56504536 | None:intergenic |
GAATTCTCCGGTTGCTCAAA+AGG | 0.373262 | 3.1:+56504839 | None:intergenic |
GTCTATCAATCTCGAAATCT+TGG | 0.381218 | 3.1:-56516563 | MS.gene63495:CDS |
GGGCAACTGTTGAACCATTT+GGG | 0.387693 | 3.1:-56507459 | MS.gene63495:CDS |
CCCCTTTGCCCCTGTGGCTG+TGG | 0.388907 | 3.1:+56504572 | None:intergenic |
CTTTGGATCAACAGGATAGA+TGG | 0.392570 | 3.1:-56506709 | MS.gene63495:CDS |
ACCATAGGAAGAATTAATTC+TGG | 0.396073 | 3.1:+56516104 | None:intergenic |
GAAAATGGCGCTGTGACTTT+GGG | 0.396112 | 3.1:+56504537 | None:intergenic |
CCTGTTTATGTTGGCAGCAC+AGG | 0.397035 | 3.1:+56505517 | None:intergenic |
TTCAGAGGAATTTGTCTTGG+TGG | 0.398630 | 3.1:-56516615 | MS.gene63495:CDS |
AGCTCATCCACCATATTGTA+AGG | 0.409258 | 3.1:+56505828 | None:intergenic |
CTTGTTAGTGACAACATATA+TGG | 0.410767 | 3.1:+56516484 | None:intergenic |
CTTTGTTTGAATTCTTGAAC+TGG | 0.411879 | 3.1:+56519041 | None:intergenic |
GACAAATACAGAGTGTATAA+AGG | 0.412831 | 3.1:-56516143 | MS.gene63495:CDS |
AGATATATACCCTTACAATA+TGG | 0.416235 | 3.1:-56505838 | MS.gene63495:CDS |
TGTGTAATAAAGGTTATTGC+AGG | 0.416292 | 3.1:-56517368 | MS.gene63495:intron |
CCTGTGCTGCCAACATAAAC+AGG | 0.419476 | 3.1:-56505517 | MS.gene63495:CDS |
CCACTCAGAACAACCCTACT+TGG | 0.419550 | 3.1:-56516051 | MS.gene63495:CDS |
GGTTCCCATATTGGATCTGC+TGG | 0.419616 | 3.1:-56507373 | MS.gene63495:CDS |
AGATGGCCGCTTTCATGATC+TGG | 0.422107 | 3.1:-56506692 | MS.gene63495:CDS |
ATCGGAATTTGCACTTATAG+TGG | 0.425285 | 3.1:-56505092 | MS.gene63495:CDS |
TGATGATCATCGACTGGAAT+TGG | 0.427425 | 3.1:+56518939 | None:intergenic |
ATCTAATCTCTTCACGCGAT+GGG | 0.429598 | 3.1:-56507428 | MS.gene63495:CDS |
TTGTTCTGAGTGGCTTACAC+TGG | 0.429950 | 3.1:+56516061 | None:intergenic |
GCCAGAATTAATTCTTCCTA+TGG | 0.431702 | 3.1:-56516105 | MS.gene63495:CDS |
ATGAATTCACATAGTATGTT+GGG | 0.433132 | 3.1:-56509674 | MS.gene63495:CDS |
AAGATAGCTGAAGCATTTGT+AGG | 0.434109 | 3.1:-56504785 | MS.gene63495:CDS |
GGTCTCCATGCCTGCTGCTG+TGG | 0.439622 | 3.1:+56504347 | None:intergenic |
ACATTATAATTTGGAATGGC+AGG | 0.441132 | 3.1:+56504644 | None:intergenic |
TGACACCCTCACAAGAAGAT+TGG | 0.441842 | 3.1:-56509622 | MS.gene63495:CDS |
GCAAAGTCAACAACCTTCTC+TGG | 0.448936 | 3.1:+56516521 | None:intergenic |
ACATTATAATTTGGAATGAC+AGG | 0.451404 | 3.1:+56504671 | None:intergenic |
ACGTCAAGGTCCACAGCAGC+AGG | 0.452998 | 3.1:-56504357 | MS.gene63495:CDS |
CTCAAAGCTTTGAGGATGAA+AGG | 0.453423 | 3.1:-56507316 | MS.gene63495:intron |
CTGTAGTGTGATCCCAGAAA+TGG | 0.460489 | 3.1:-56517301 | MS.gene63495:CDS |
TTGCTTTGACGTTGAACCGT+TGG | 0.465095 | 3.1:+56504490 | None:intergenic |
ATCAATCTCGAAATCTTGGT+TGG | 0.466791 | 3.1:-56516559 | MS.gene63495:CDS |
TCCACAGCCACAGGGGCAAA+GGG | 0.474201 | 3.1:-56504573 | MS.gene63495:CDS |
AATGAATTCACATAGTATGT+TGG | 0.475354 | 3.1:-56509675 | MS.gene63495:CDS |
ACAGATCTTGCTGAATTCTC+CGG | 0.480099 | 3.1:+56504827 | None:intergenic |
CCCTGTGGCTGTGGATGAGT+TGG | 0.480768 | 3.1:+56504581 | None:intergenic |
ATTTCCAGATTTCTTTGCCA+TGG | 0.480958 | 3.1:+56519190 | None:intergenic |
CTTCACGCGATGGGGTGACT+TGG | 0.482241 | 3.1:-56507419 | MS.gene63495:CDS |
ATGTGTGGAGTCTTATTGCC+AGG | 0.486616 | 3.1:-56504694 | MS.gene63495:CDS |
TCAATCTCGAAATCTTGGTT+GGG | 0.489944 | 3.1:-56516558 | MS.gene63495:CDS |
TCATTCCAAATTATAATGTC+AGG | 0.492163 | 3.1:-56504667 | MS.gene63495:CDS |
GTTTCGATCAATAACCTGTC+GGG | 0.493275 | 3.1:-56506754 | MS.gene63495:CDS |
GACACCCTCACAAGAAGATT+GGG | 0.493660 | 3.1:-56509621 | MS.gene63495:CDS |
CCGTTGTAATTTGGAATGGC+AGG | 0.493742 | 3.1:+56504617 | None:intergenic |
TGTTCTGAGTGGCTTACACT+GGG | 0.494081 | 3.1:+56516062 | None:intergenic |
TAGAATGGGAACTCTTGCAC+TGG | 0.495619 | 3.1:+56506813 | None:intergenic |
TTCCAACTTGATATAATCCA+TGG | 0.495903 | 3.1:+56516280 | None:intergenic |
CATCACAAGATATGCCTTGT+CGG | 0.498345 | 3.1:+56506776 | None:intergenic |
TCCAACTCATCCACAGCCAC+AGG | 0.499353 | 3.1:-56504582 | MS.gene63495:CDS |
AGTTTGCTCAGATCGATGAA+TGG | 0.499446 | 3.1:-56505124 | MS.gene63495:CDS |
CCATTCCAAATTATAATGTC+AGG | 0.499895 | 3.1:-56504640 | MS.gene63495:CDS |
AGTTCAAGAATTCAAACAAA+GGG | 0.501785 | 3.1:-56519039 | MS.gene63495:CDS |
GGACCTTGACGTGCTTTAGC+AGG | 0.501971 | 3.1:+56504368 | None:intergenic |
GATGAATGGGCCTCAGAGAT+CGG | 0.505210 | 3.1:-56505110 | MS.gene63495:CDS |
GTTTGCTCAGATCGATGAAT+GGG | 0.505286 | 3.1:-56505123 | MS.gene63495:CDS |
TGGATTTCATCAAGCCCGAC+AGG | 0.505327 | 3.1:+56506740 | None:intergenic |
AACCATGGATTATATCAAGT+TGG | 0.507282 | 3.1:-56516282 | MS.gene63495:CDS |
CAGAACAACCCTACTTGGAT+TGG | 0.510426 | 3.1:-56516046 | MS.gene63495:CDS |
ATAAGACTCCACACATGTGC+TGG | 0.513868 | 3.1:+56504701 | None:intergenic |
CACAAGAAGATTGGGAGATA+CGG | 0.514003 | 3.1:-56509613 | MS.gene63495:CDS |
TATCTAATCTCTTCACGCGA+TGG | 0.514198 | 3.1:-56507429 | MS.gene63495:CDS |
TCTCCCAGCAGATCCAATAT+GGG | 0.515355 | 3.1:+56507369 | None:intergenic |
AAAATCAATAACTCTAAGAC+TGG | 0.521420 | 3.1:-56506545 | MS.gene63495:CDS |
TTAATTCTTCCTATGGTACC+TGG | 0.531656 | 3.1:-56516098 | MS.gene63495:CDS |
ATCCACAGCCACAGGGGCAA+AGG | 0.533541 | 3.1:-56504574 | MS.gene63495:CDS |
AACACGCCCCTTTGCCCCTG+TGG | 0.533905 | 3.1:+56504566 | None:intergenic |
ATGTTCAGAGGAATTTGTCT+TGG | 0.537503 | 3.1:-56516618 | MS.gene63495:CDS |
TATCTCCCAATCTTCTTGTG+AGG | 0.539767 | 3.1:+56509616 | None:intergenic |
ATCTCCCAATCTTCTTGTGA+GGG | 0.540615 | 3.1:+56509617 | None:intergenic |
TCTAAAACACCAATCCAAGT+AGG | 0.541155 | 3.1:+56516037 | None:intergenic |
CCTGACATTATAATTTGGAA+TGG | 0.541392 | 3.1:+56504640 | None:intergenic |
GTCACTAACAAGGCCAACAT+AGG | 0.541798 | 3.1:-56516473 | MS.gene63495:CDS |
AGATAGCTGAAGCATTTGTA+GGG | 0.542347 | 3.1:-56504784 | MS.gene63495:CDS |
ACCTCCGTTGTAATTTGGAA+TGG | 0.548068 | 3.1:+56504613 | None:intergenic |
TACTTATTCGACACCAGAGA+AGG | 0.548475 | 3.1:-56516534 | MS.gene63495:CDS |
ATAATTTGGAATGACAGGCC+TGG | 0.551278 | 3.1:+56504676 | None:intergenic |
AGAATGGGAACTCTTGCACT+GGG | 0.553145 | 3.1:+56506814 | None:intergenic |
CTTTCATGATCTGGTTGTAG+TGG | 0.556570 | 3.1:-56506683 | MS.gene63495:intron |
TTTCATAACCCCACATGCGC+GGG | 0.556737 | 3.1:+56516198 | None:intergenic |
AGGCAAGGTGCAAGCTCCAA+CGG | 0.557349 | 3.1:-56504506 | MS.gene63495:CDS |
TGGCGCTGTGACTTTGGGTG+TGG | 0.559483 | 3.1:+56504542 | None:intergenic |
CTAAAACACCAATCCAAGTA+GGG | 0.562198 | 3.1:+56516038 | None:intergenic |
CTATGAGCAACCCGCGCATG+TGG | 0.563384 | 3.1:-56516208 | MS.gene63495:CDS |
GGTTCATATCAAACAAGTCC+AGG | 0.565404 | 3.1:-56505496 | MS.gene63495:CDS |
TTAGATACAACTGACCCAAA+TGG | 0.566089 | 3.1:+56507445 | None:intergenic |
CAAGCTAAGTATCCCTATGT+TGG | 0.567537 | 3.1:+56516460 | None:intergenic |
CGTTGTTGATGATCATCGAC+TGG | 0.568542 | 3.1:+56518933 | None:intergenic |
AAGGTCCACAGCAGCAGGCA+TGG | 0.568937 | 3.1:-56504352 | MS.gene63495:CDS |
TACAAGTAAACTGAGCGTAA+AGG | 0.573483 | 3.1:+56506511 | None:intergenic |
TGTAGTGTGATCCCAGAAAT+GGG | 0.578367 | 3.1:-56517300 | MS.gene63495:CDS |
AACGGTTCAACGTCAAAGCA+AGG | 0.580256 | 3.1:-56504488 | MS.gene63495:CDS |
TGATATGAACCTGTTTATGT+TGG | 0.580786 | 3.1:+56505508 | None:intergenic |
TATGAGCAACCCGCGCATGT+GGG | 0.582197 | 3.1:-56516207 | MS.gene63495:CDS |
AGTAGAGAGGTACCTGAAGG+TGG | 0.582878 | 3.1:+56506483 | None:intergenic |
CAACAACGAGGTCACAAGAC+CGG | 0.584460 | 3.1:-56518918 | MS.gene63495:intron |
GAGAATTCAGCAAGATCTGT+CGG | 0.588586 | 3.1:-56504824 | MS.gene63495:CDS |
TGTTTCGATCAATAACCTGT+CGG | 0.592217 | 3.1:-56506755 | MS.gene63495:CDS |
TCGATGATCATCCTTCATGC+AGG | 0.592282 | 3.1:+56519076 | None:intergenic |
AGATAAAGAACAACATGAGA+TGG | 0.594320 | 3.1:-56505058 | MS.gene63495:CDS |
TTGCACTTATAGTGGACAGT+GGG | 0.595106 | 3.1:-56505084 | MS.gene63495:CDS |
TATATACCCTTACAATATGG+TGG | 0.595530 | 3.1:-56505835 | MS.gene63495:CDS |
CAGTTCAAGAATTCAAACAA+AGG | 0.597402 | 3.1:-56519040 | MS.gene63495:CDS |
TTTACCTCTCAGACTCTCCA+CGG | 0.597748 | 3.1:+56509553 | None:intergenic |
ATGAGCAACCCGCGCATGTG+GGG | 0.604736 | 3.1:-56516206 | MS.gene63495:CDS |
AGATTACGTCCAGGTACCAT+AGG | 0.605564 | 3.1:+56516089 | None:intergenic |
ACCAAAGGCTCCAAATCCAA+TGG | 0.605670 | 3.1:-56504327 | MS.gene63495:CDS |
GGCTTGTGTAGGTGAAGGAG+TGG | 0.608531 | 3.1:-56506580 | MS.gene63495:intron |
CTGGGATGTAGATTACGTCC+AGG | 0.609589 | 3.1:+56516080 | None:intergenic |
TCACTAACAAGGCCAACATA+GGG | 0.609840 | 3.1:-56516472 | MS.gene63495:CDS |
GGCGCTGTGACTTTGGGTGT+GGG | 0.610172 | 3.1:+56504543 | None:intergenic |
TTTAACTGATATACTTCGGA+CGG | 0.611571 | 3.1:-56509645 | MS.gene63495:CDS |
CATATATGTTGTCACTAACA+AGG | 0.612944 | 3.1:-56516483 | MS.gene63495:CDS |
GATTCGATAATGCTTCATGT+AGG | 0.613411 | 3.1:+56518968 | None:intergenic |
TAAGGGTATATATCTTTCAG+TGG | 0.614153 | 3.1:+56505846 | None:intergenic |
CCAAGTAGGGTTGTTCTGAG+TGG | 0.614871 | 3.1:+56516051 | None:intergenic |
GCGAAGCGCTGCTGAATCCG+TGG | 0.618401 | 3.1:-56509570 | MS.gene63495:CDS |
TGATTTCAAGACCTGCATGA+AGG | 0.618425 | 3.1:-56519087 | MS.gene63495:CDS |
GTGTTTCATGATGATAAGAG+TGG | 0.622010 | 3.1:-56519140 | MS.gene63495:CDS |
ATCTGGAAATGAGTTTCTGG+AGG | 0.622936 | 3.1:-56519177 | MS.gene63495:CDS |
CAAGATAGACTTATCAACCA+TGG | 0.627651 | 3.1:-56516297 | MS.gene63495:CDS |
GTTCCCATATTGGATCTGCT+GGG | 0.628264 | 3.1:-56507372 | MS.gene63495:CDS |
GCTCATCCACCATATTGTAA+GGG | 0.628670 | 3.1:+56505829 | None:intergenic |
GTGTGATCCCAGAAATGGGA+AGG | 0.632651 | 3.1:-56517296 | MS.gene63495:intron |
CCACAGCCACAGGGGCAAAG+GGG | 0.634379 | 3.1:-56504572 | MS.gene63495:CDS |
TCTAATCTCTTCACGCGATG+GGG | 0.638369 | 3.1:-56507427 | MS.gene63495:CDS |
CCAACTCATCCACAGCCACA+GGG | 0.638903 | 3.1:-56504581 | MS.gene63495:CDS |
GCCATTCCAAATTACAACGG+AGG | 0.642837 | 3.1:-56504614 | MS.gene63495:CDS |
GGGTATATATCTTTCAGTGG+TGG | 0.645534 | 3.1:+56505849 | None:intergenic |
AGGGTGAATGATGTACTCAA+AGG | 0.654608 | 3.1:-56519020 | MS.gene63495:CDS |
AAGCAAGGAGCAAACTCCAA+CGG | 0.656235 | 3.1:-56504473 | MS.gene63495:intron |
GCAGCAGGCATGGAGACCAA+AGG | 0.664174 | 3.1:-56504342 | MS.gene63495:CDS |
CTACAACCAGATCATGAAAG+CGG | 0.665942 | 3.1:+56506686 | None:intergenic |
AGTTAGCACCAGCACATGTG+TGG | 0.666847 | 3.1:-56504709 | MS.gene63495:CDS |
TTTGCACTTATAGTGGACAG+TGG | 0.675119 | 3.1:-56505085 | MS.gene63495:CDS |
GTACCTGCTAAAGCACGTCA+AGG | 0.675311 | 3.1:-56504371 | MS.gene63495:CDS |
GAATGGGAACTCTTGCACTG+GGG | 0.677287 | 3.1:+56506815 | None:intergenic |
GCTTGTGTAGGTGAAGGAGT+GGG | 0.679102 | 3.1:-56506579 | MS.gene63495:intron |
AAATTTAAAAGTGTCCGACA+AGG | 0.680098 | 3.1:-56506790 | MS.gene63495:CDS |
GAATCCGTGGAGAGTCTGAG+AGG | 0.687013 | 3.1:-56509557 | MS.gene63495:intron |
ACTCCCAATAGTAACGACAA+TGG | 0.703130 | 3.1:+56509713 | None:intergenic |
CAACTCATCCACAGCCACAG+GGG | 0.708530 | 3.1:-56504580 | MS.gene63495:CDS |
CCTGCCATTCCAAATTACAA+CGG | 0.708652 | 3.1:-56504617 | MS.gene63495:CDS |
AGTGCAAATTCCGATCTCTG+AGG | 0.715212 | 3.1:+56505100 | None:intergenic |
AATATGGTGGATGAGCTGAG+AGG | 0.762740 | 3.1:-56505822 | MS.gene63495:intron |
GTCGATGATCATCAACAACG+AGG | 0.778656 | 3.1:-56518930 | MS.gene63495:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 56504322 | 56519210 | 56504322 | ID=MS.gene63495 |
chr3.1 | mRNA | 56504322 | 56519210 | 56504322 | ID=MS.gene63495.t1;Parent=MS.gene63495 |
chr3.1 | exon | 56518919 | 56519210 | 56518919 | ID=MS.gene63495.t1.exon1;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56518919 | 56519210 | 56518919 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56517297 | 56517378 | 56517297 | ID=MS.gene63495.t1.exon2;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56517297 | 56517378 | 56517297 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56516391 | 56516640 | 56516391 | ID=MS.gene63495.t1.exon3;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56516391 | 56516640 | 56516391 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56516022 | 56516336 | 56516022 | ID=MS.gene63495.t1.exon4;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56516022 | 56516336 | 56516022 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56509558 | 56509744 | 56509558 | ID=MS.gene63495.t1.exon5;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56509558 | 56509744 | 56509558 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56507317 | 56507481 | 56507317 | ID=MS.gene63495.t1.exon6;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56507317 | 56507481 | 56507317 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56506684 | 56506862 | 56506684 | ID=MS.gene63495.t1.exon7;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56506684 | 56506862 | 56506684 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56506496 | 56506591 | 56506496 | ID=MS.gene63495.t1.exon8;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56506496 | 56506591 | 56506496 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56505823 | 56505892 | 56505823 | ID=MS.gene63495.t1.exon9;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56505823 | 56505892 | 56505823 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56505445 | 56505575 | 56505445 | ID=MS.gene63495.t1.exon10;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56505445 | 56505575 | 56505445 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56505034 | 56505144 | 56505034 | ID=MS.gene63495.t1.exon11;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56505034 | 56505144 | 56505034 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56504474 | 56504870 | 56504474 | ID=MS.gene63495.t1.exon12;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56504474 | 56504870 | 56504474 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
chr3.1 | exon | 56504322 | 56504392 | 56504322 | ID=MS.gene63495.t1.exon13;Parent=MS.gene63495.t1 |
chr3.1 | CDS | 56504322 | 56504392 | 56504322 | ID=cds.MS.gene63495.t1;Parent=MS.gene63495.t1 |
Gene Sequence |
Protein sequence |