AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63561


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63561.t1 MTR_3g037340 98.896 453 2 1 1 450 1 453 0.0 932
MS.gene63561.t1 MTR_4g108940 83.850 452 67 4 1 450 1 448 0.0 777
MS.gene63561.t1 MTR_7g108675 57.301 452 156 5 33 447 10 461 0.0 550
MS.gene63561.t1 MTR_4g119880 58.701 431 153 4 33 438 10 440 0.0 543
MS.gene63561.t1 MTR_8g058553 59.012 405 129 5 33 400 10 414 3.76e-178 509
MS.gene63561.t1 MTR_4g097240 45.430 372 155 7 94 432 75 431 1.72e-111 335
MS.gene63561.t1 MTR_5g015260 40.000 425 206 10 29 414 17 431 2.90e-106 322
MS.gene63561.t1 MTR_4g097230 44.828 348 152 8 110 422 73 415 9.12e-100 305
MS.gene63561.t1 MTR_4g108950 61.417 127 5 1 283 409 1 83 7.39e-44 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63561.t1 AT5G07720 77.024 457 98 3 1 450 1 457 0.0 752
MS.gene63561.t1 AT1G74380 77.511 458 94 5 1 450 1 457 0.0 727
MS.gene63561.t1 AT1G18690 65.226 486 102 5 27 445 26 511 0.0 635
MS.gene63561.t1 AT1G18690 65.226 486 102 5 27 445 26 511 0.0 635
MS.gene63561.t1 AT1G18690 65.226 486 102 5 27 445 26 511 0.0 635
MS.gene63561.t1 AT1G18690 65.226 486 102 5 27 445 26 511 0.0 635
MS.gene63561.t1 AT3G62720 58.257 436 152 5 33 438 10 445 0.0 535
MS.gene63561.t1 AT3G62720 58.257 436 152 5 33 438 10 445 0.0 535
MS.gene63561.t1 AT4G02500 58.581 437 150 5 33 438 10 446 0.0 526
MS.gene63561.t1 AT2G22900 41.176 374 173 8 80 414 66 431 4.27e-95 294
MS.gene63561.t1 AT4G37690 41.570 344 157 5 110 414 76 414 5.26e-95 293
MS.gene63561.t1 AT4G38310 45.192 104 52 3 110 211 17 117 5.52e-24 97.1

Find 131 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTATTTGCATGGTTAT+TGG 0.211134 3.2:-25758579 MS.gene63561:CDS
ACATGGAGCTTGCAGGTTAC+TGG 0.215014 3.2:-25759014 MS.gene63561:CDS
AATCAAGTGCTTAAACTCTA+TGG 0.218743 3.2:-25758382 MS.gene63561:CDS
TTTCTATTTGCATGGTTATT+GGG 0.219207 3.2:-25758578 MS.gene63561:CDS
CCTTCGAATCATGGGCAATT+TGG 0.225308 3.2:+25758990 None:intergenic
GGCTTCCCCTTAACAAAATT+AGG 0.245317 3.2:+25760425 None:intergenic
TTCTCTCAGTATCCCAATTA+AGG 0.247028 3.2:+25760477 None:intergenic
TTGGTCCTAAGATCCTTAAT+TGG 0.264667 3.2:-25760490 MS.gene63561:CDS
CACCAAATCCACTCCACTTC+AGG 0.295318 3.2:+25758952 None:intergenic
CGTTGGATTTGCTTGATGCT+TGG 0.301608 3.2:-25758765 MS.gene63561:CDS
TGTTGTTCGAGCAGAATTCT+TGG 0.311777 3.2:-25758834 MS.gene63561:CDS
TTTCCAGCCTCCTCTCGAAT+TGG 0.317408 3.2:+25758721 None:intergenic
GAAAAGTATCATCCGGGGTT+AGG 0.321720 3.2:-25758523 MS.gene63561:CDS
GTTGGATTTGCTTGATGCTT+GGG 0.326654 3.2:-25758764 MS.gene63561:CDS
GTATCCCAATTAAGGATCTT+AGG 0.329038 3.2:+25760485 None:intergenic
TCCTCTCGAATTGGGCCTTT+CGG 0.333238 3.2:+25758730 None:intergenic
TATTTGCATGGTTATTGGGC+TGG 0.334350 3.2:-25758574 MS.gene63561:CDS
AGAATAAGATTGATTATTGC+AGG 0.335344 3.2:-25760322 MS.gene63561:intron
ATTCAAACTCATAAAAGTTT+CGG 0.342769 3.2:+25760526 None:intergenic
CACTTGGACATGGAGCTTGC+AGG 0.363992 3.2:-25759021 MS.gene63561:CDS
GATTATAATATGGTTATTCA+TGG 0.367610 3.2:-25758868 MS.gene63561:CDS
TTCCAGCCTCCTCTCGAATT+GGG 0.373721 3.2:+25758722 None:intergenic
TAAATATAAAGATTATAATA+TGG 0.375741 3.2:-25758878 MS.gene63561:CDS
AAAAGTATCATCCGGGGTTA+GGG 0.380704 3.2:-25758522 MS.gene63561:CDS
TTGAATGAAACTTATGCTCT+TGG 0.381407 3.2:-25760509 MS.gene63561:CDS
GCTTGATGCTTGGGCTCCCA+TGG 0.388448 3.2:-25758755 MS.gene63561:CDS
AAAAGATAATGATCACCAAT+AGG 0.391177 3.2:+25760356 None:intergenic
TGCTTAAACTCTATGGGTTT+AGG 0.393742 3.2:-25758375 MS.gene63561:CDS
ACCCTGAAGTGGAGTGGATT+TGG 0.394154 3.2:-25758954 MS.gene63561:CDS
ATTGGGCTGGGTTGGTTGAT+CGG 0.403121 3.2:-25758561 MS.gene63561:CDS
GTCCTAAAATCAAGCGGATC+AGG 0.412056 3.2:-25758336 MS.gene63561:CDS
AACTCTATGGGTTTAGGCAC+CGG 0.412162 3.2:-25758369 MS.gene63561:CDS
CAAAGGAAGGCCAGCGTTTG+AGG 0.413207 3.2:-25758680 MS.gene63561:CDS
TTGTGGGGTGTAAGCCTTGT+GGG 0.414516 3.2:-25758471 MS.gene63561:CDS
CTACTAAGGCATCTCTCTAC+TGG 0.417101 3.2:+25758433 None:intergenic
TGTAAGCCTTGTGGGAGTTA+TGG 0.420456 3.2:-25758463 MS.gene63561:CDS
ATAGGATTATCACACGGTTT+CGG 0.428352 3.2:+25760374 None:intergenic
GAGGTTGGTGTTGTTGTTGT+TGG 0.429334 3.2:+25760773 None:intergenic
CATGGAGCTTGCAGGTTACT+GGG 0.431346 3.2:-25759013 MS.gene63561:CDS
TGCTGTCAAAGAAGGACAAA+TGG 0.438378 3.2:-25758627 MS.gene63561:CDS
CTCGTCCTACGTGGCACAAT+CGG 0.441138 3.2:-25760662 MS.gene63561:CDS
ATTTGCATGGTTATTGGGCT+GGG 0.441189 3.2:-25758573 MS.gene63561:CDS
AAACCGTGTGATAATCCTAT+TGG 0.442105 3.2:-25760371 MS.gene63561:CDS
TGGTCCTAAGATCCTTAATT+GGG 0.442563 3.2:-25760489 MS.gene63561:CDS
TGTTGGTAATCCTCCTGTGC+TGG 0.443020 3.2:+25760790 None:intergenic
CTTGATGCTTGGGCTCCCAT+GGG 0.444480 3.2:-25758754 MS.gene63561:CDS
TTCTGCTCGAACAACAAATC+AGG 0.448355 3.2:+25758841 None:intergenic
ATCGGATCTCAGCGAGGATA+CGG 0.453679 3.2:+25760579 None:intergenic
GCATGGTTATTGGGCTGGGT+TGG 0.459215 3.2:-25758569 MS.gene63561:CDS
TAACATGAGCCTTCGAATCA+TGG 0.459737 3.2:+25758981 None:intergenic
AATTGGGCCTTTCGGACCCA+TGG 0.460863 3.2:+25758738 None:intergenic
ATATTTATTGCTGTCAAAGA+AGG 0.460969 3.2:-25758635 MS.gene63561:CDS
TGTGTACAACATGGCTCACT+TGG 0.467982 3.2:-25759037 MS.gene63561:CDS
GTTGCCTTCGTATATCAAAC+TGG 0.478121 3.2:+25758281 None:intergenic
TAACAAAATTAGGATATTCA+CGG 0.478655 3.2:+25760435 None:intergenic
ATAATCTTTATATTTACTCA+TGG 0.485294 3.2:+25758885 None:intergenic
ATCAAGTGCTTAAACTCTAT+GGG 0.487154 3.2:-25758381 MS.gene63561:CDS
GAGAATTCTTTCTATTTGCA+TGG 0.494521 3.2:-25758586 MS.gene63561:CDS
AAGCCCTCTCCATGCTACTA+AGG 0.496820 3.2:+25758419 None:intergenic
GATGATGGAAAAGTATCATC+CGG 0.501280 3.2:-25758530 MS.gene63561:CDS
ACCAAATCCACTCCACTTCA+GGG 0.502114 3.2:+25758953 None:intergenic
CCCACAAAATGTGTCACAAA+CGG 0.510101 3.2:+25758487 None:intergenic
TCGCAATTGCCAGTGGTCGT+TGG 0.510685 3.2:-25758782 MS.gene63561:CDS
ACTCTATGGGTTTAGGCACC+GGG 0.517276 3.2:-25758368 MS.gene63561:CDS
GGCCCAATTCGAGAGGAGGC+TGG 0.523771 3.2:-25758724 MS.gene63561:CDS
AACATGAGCCTTCGAATCAT+GGG 0.527557 3.2:+25758982 None:intergenic
TCGGTCTGATTCCGATCAGA+TGG 0.529115 3.2:+25760545 None:intergenic
GTTTGAGGCTGATGATCAAT+CGG 0.529154 3.2:-25758665 MS.gene63561:CDS
CAAGCAAATCCAACGACCAC+TGG 0.529363 3.2:+25758773 None:intergenic
TGATCATCAGCCTCAAACGC+TGG 0.531307 3.2:+25758670 None:intergenic
TAATCTTTATATTTACTCAT+GGG 0.532867 3.2:+25758886 None:intergenic
AACTGGTCTACAAACTCTAA+AGG 0.539086 3.2:+25758298 None:intergenic
GACGTCCACGTGGCAGTGTA+CGG 0.545246 3.2:+25760744 None:intergenic
ATTGGGCCTTTCGGACCCAT+GGG 0.545353 3.2:+25758739 None:intergenic
ATTATAATATGGTTATTCAT+GGG 0.546527 3.2:-25758867 MS.gene63561:CDS
CGGGGTTAGGGGATGAGAGG+TGG 0.553753 3.2:-25758510 MS.gene63561:CDS
CCAGTAAGAAGCAAAATCCT+TGG 0.555277 3.2:+25760404 None:intergenic
CCAAATTGCCCATGATTCGA+AGG 0.557570 3.2:-25758990 MS.gene63561:CDS
AGAGAGATGCCTTAGTAGCA+TGG 0.561542 3.2:-25758428 MS.gene63561:CDS
GGCACAATCGGCGTTAACCT+CGG 0.562299 3.2:-25760650 MS.gene63561:CDS
TGGGCTCCCATGGGTCCGAA+AGG 0.563049 3.2:-25758745 MS.gene63561:CDS
TGATCGGTATGAAGAGATGA+TGG 0.569190 3.2:-25758545 MS.gene63561:CDS
GGATTATCACACGGTTTCGG+AGG 0.569607 3.2:+25760377 None:intergenic
GTCAAAGAAGGACAAATGGA+TGG 0.573047 3.2:-25758623 MS.gene63561:CDS
TCTTGGATCGCAATCAACAC+AGG 0.574658 3.2:-25758817 MS.gene63561:CDS
CATGTTATCACACCCTGAAG+TGG 0.577774 3.2:-25758965 MS.gene63561:CDS
CTGAAGTGGAGTGGATTTGG+TGG 0.580330 3.2:-25758951 MS.gene63561:CDS
ATGATGGAAAAGTATCATCC+GGG 0.583014 3.2:-25758529 MS.gene63561:CDS
AGTGTACGGTTACGTGAGGT+TGG 0.583387 3.2:+25760758 None:intergenic
CAACATGGCTCACTTGGACA+TGG 0.584694 3.2:-25759031 MS.gene63561:CDS
GAAGGACAAATGGATGGAGA+AGG 0.593298 3.2:-25758617 MS.gene63561:CDS
ATGCCTTAGTAGCATGGAGA+GGG 0.593651 3.2:-25758422 MS.gene63561:CDS
CACCTCTCATCCCCTAACCC+CGG 0.593781 3.2:+25758511 None:intergenic
TGACGGCAAATCTCAAAGGA+AGG 0.593858 3.2:-25758693 MS.gene63561:CDS
TAGACCAGTTTGATATACGA+AGG 0.595190 3.2:-25758285 MS.gene63561:CDS
AGTGGAGTGGATTTGGTGGA+TGG 0.596443 3.2:-25758947 MS.gene63561:CDS
CTGATTCCGATCAGATGGAT+CGG 0.599712 3.2:+25760550 None:intergenic
CGATTGTGCCACGTAGGACG+AGG 0.603186 3.2:+25760663 None:intergenic
GATATACGAAGGCAACATGC+AGG 0.607469 3.2:-25758274 MS.gene63561:CDS
ATCCGGGGTTAGGGGATGAG+AGG 0.609923 3.2:-25758513 MS.gene63561:CDS
AAAAGAACAACCAGCACAGG+AGG 0.611682 3.2:-25760800 MS.gene63561:CDS
GGGATACTGAGAGAACAAGT+TGG 0.615463 3.2:-25760469 MS.gene63561:CDS
CAGATGGATCGGAATCAGAT+CGG 0.617890 3.2:+25760561 None:intergenic
ATATGATACTGCAGGTTGCA+TGG 0.626424 3.2:-25759069 MS.gene63561:intron
TCCGAAAGGCCCAATTCGAG+AGG 0.629140 3.2:-25758731 MS.gene63561:CDS
CGTCGTTCTGTGATGTGCCG+AGG 0.629271 3.2:+25760633 None:intergenic
GAAAGGCCCAATTCGAGAGG+AGG 0.629628 3.2:-25758728 MS.gene63561:CDS
AAAGTATCATCCGGGGTTAG+GGG 0.636823 3.2:-25758521 MS.gene63561:CDS
CTGATTCCGATCCATCTGAT+CGG 0.638243 3.2:-25760556 MS.gene63561:CDS
TTTGTGGGGTGTAAGCCTTG+TGG 0.644111 3.2:-25758472 MS.gene63561:CDS
TGTTAAGTCCTAAAATCAAG+CGG 0.644756 3.2:-25758342 MS.gene63561:CDS
GATGCCTTAGTAGCATGGAG+AGG 0.645528 3.2:-25758423 MS.gene63561:CDS
CTTGGATCGCAATCAACACA+GGG 0.648132 3.2:-25758816 MS.gene63561:CDS
TATCACACCCTGAAGTGGAG+TGG 0.650624 3.2:-25758960 MS.gene63561:CDS
GTTAGTTTCCTCGATGACAG+CGG 0.666536 3.2:+25760601 None:intergenic
GTAACAATCCTCGTCCTACG+TGG 0.672440 3.2:-25760671 MS.gene63561:CDS
GGATTGTTACGAAACCGCAG+AGG 0.680262 3.2:+25760684 None:intergenic
CTCTATGGGTTTAGGCACCG+GGG 0.680557 3.2:-25758367 MS.gene63561:CDS
CATTGAAATTGTGTACAACA+TGG 0.690436 3.2:-25759046 MS.gene63561:CDS
AATCAGATCGGATCTCAGCG+AGG 0.690802 3.2:+25760573 None:intergenic
CGTAACCGTACACTGCCACG+TGG 0.692950 3.2:-25760749 MS.gene63561:CDS
TGGCAGTGTACGGTTACGTG+AGG 0.694238 3.2:+25760754 None:intergenic
TGATGCATTCTTCACTGACA+TGG 0.695080 3.2:-25758920 MS.gene63561:CDS
TAATCTCCATAACTCCCACA+AGG 0.704992 3.2:+25758457 None:intergenic
GGTTAACGCCGCTGTCATCG+AGG 0.708089 3.2:-25760609 MS.gene63561:CDS
TGATGGAAAAGTATCATCCG+GGG 0.711814 3.2:-25758528 MS.gene63561:CDS
ATAAAGATCACAATCCTCTG+CGG 0.729589 3.2:-25760698 MS.gene63561:CDS
AAGGCAACATGCAGGCACTG+TGG 0.731966 3.2:-25758266 MS.gene63561:CDS
TAACGCCGATTGTGCCACGT+AGG 0.737361 3.2:+25760657 None:intergenic
CGGCACATCACAGAACGACG+CGG 0.749199 3.2:-25760630 MS.gene63561:CDS
TCACCAATAGGATTATCACA+CGG 0.755282 3.2:+25760368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTCAATTTTTATATAA+TGG - chr3.2:25758792-25758811 MS.gene63561:CDS 10.0%
!!! ATTTTTTGTTCAAAAATTTA+CGG - chr3.2:25759501-25759520 MS.gene63561:intron 10.0%
!! ATAATCTTTATATTTACTCA+TGG + chr3.2:25760197-25760216 None:intergenic 15.0%
!! ATTATAATATGGTTATTCAT+GGG - chr3.2:25760212-25760231 MS.gene63561:intron 15.0%
!! TAATCTTTATATTTACTCAT+GGG + chr3.2:25760196-25760215 None:intergenic 15.0%
!!! TGTTTTTATATAAGCTATAT+TGG - chr3.2:25759047-25759066 MS.gene63561:CDS 15.0%
!!! TTATTTTACTTTTTAGGATT+TGG - chr3.2:25759546-25759565 MS.gene63561:intron 15.0%
!!! TTTTTTGTTCAAAAATTTAC+GGG - chr3.2:25759502-25759521 MS.gene63561:intron 15.0%
!! ATTCAAACTCATAAAAGTTT+CGG + chr3.2:25758556-25758575 None:intergenic 20.0%
!! GATTATAATATGGTTATTCA+TGG - chr3.2:25760211-25760230 MS.gene63561:intron 20.0%
!! TAACAAAATTAGGATATTCA+CGG + chr3.2:25758647-25758666 None:intergenic 20.0%
!! TTATCATTTATCATGATAAG+CGG - chr3.2:25758943-25758962 MS.gene63561:CDS 20.0%
!!! AATATCCTAATTTTGTTAAG+GGG - chr3.2:25758649-25758668 MS.gene63561:CDS 20.0%
!!! GAATATCCTAATTTTGTTAA+GGG - chr3.2:25758648-25758667 MS.gene63561:CDS 20.0%
!!! TAGTGGTTATTTTACTTTTT+AGG - chr3.2:25759540-25759559 MS.gene63561:intron 20.0%
!!! TGAATATCCTAATTTTGTTA+AGG - chr3.2:25758647-25758666 MS.gene63561:CDS 20.0%
!!! TTATGTTGTTGAATGTTTTT+TGG + chr3.2:25758365-25758384 None:intergenic 20.0%
! AAAAGATAATGATCACCAAT+AGG + chr3.2:25758726-25758745 None:intergenic 25.0%
! AGAATAAGATTGATTATTGC+AGG - chr3.2:25758757-25758776 MS.gene63561:CDS 25.0%
! ATATTTATTGCTGTCAAAGA+AGG - chr3.2:25760444-25760463 MS.gene63561:CDS 25.0%
! ATTTGCATATAGTATGTGTT+TGG - chr3.2:25759459-25759478 MS.gene63561:intron 25.0%
! GACTTTACAAATAATGTGTT+TGG - chr3.2:25759423-25759442 MS.gene63561:intron 25.0%
! TATCATTTATCATGATAAGC+GGG - chr3.2:25758944-25758963 MS.gene63561:CDS 25.0%
! TTTCTATTTGCATGGTTATT+GGG - chr3.2:25760501-25760520 MS.gene63561:CDS 25.0%
!! TTTTTGTTAGACAACTCAAT+TGG + chr3.2:25759601-25759620 None:intergenic 25.0%
AATCAAGTGCTTAAACTCTA+TGG - chr3.2:25760697-25760716 MS.gene63561:CDS 30.0%
ATAAAAGAGCAGAGTAAAGA+TGG + chr3.2:25759781-25759800 None:intergenic 30.0%
ATCAAGTGCTTAAACTCTAT+GGG - chr3.2:25760698-25760717 MS.gene63561:CDS 30.0%
CAAATAAGTTTCTTCACTTC+AGG + chr3.2:25759903-25759922 None:intergenic 30.0%
CATTGAAATTGTGTACAACA+TGG - chr3.2:25760033-25760052 MS.gene63561:intron 30.0%
CTTTCTATTTGCATGGTTAT+TGG - chr3.2:25760500-25760519 MS.gene63561:CDS 30.0%
GAGAATTCTTTCTATTTGCA+TGG - chr3.2:25760493-25760512 MS.gene63561:CDS 30.0%
GGCAAATGTTAGTAAATTAG+TGG - chr3.2:25759523-25759542 MS.gene63561:intron 30.0%
TGTTAAGTCCTAAAATCAAG+CGG - chr3.2:25760737-25760756 MS.gene63561:CDS 30.0%
TTGAATGAAACTTATGCTCT+TGG - chr3.2:25758570-25758589 MS.gene63561:CDS 30.0%
TTTCCATCTTATGCTTTCAT+CGG - chr3.2:25759844-25759863 MS.gene63561:intron 30.0%
! CCTATAAAAACGAGCTTTAA+AGG + chr3.2:25759206-25759225 None:intergenic 30.0%
! CTTTCATCGGTTATTCAAAA+CGG - chr3.2:25759857-25759876 MS.gene63561:intron 30.0%
!!! ATTAGTTTTGTGAGACTGTT+CGG + chr3.2:25759139-25759158 None:intergenic 30.0%
!!! CCTTTAAAGCTCGTTTTTAT+AGG - chr3.2:25759203-25759222 MS.gene63561:intron 30.0%
AAACCGTGTGATAATCCTAT+TGG - chr3.2:25758708-25758727 MS.gene63561:CDS 35.0%
ATAAAGATCACAATCCTCTG+CGG - chr3.2:25758381-25758400 MS.gene63561:CDS 35.0%
ATAGGATTATCACACGGTTT+CGG + chr3.2:25758708-25758727 None:intergenic 35.0%
GTATCCCAATTAAGGATCTT+AGG + chr3.2:25758597-25758616 None:intergenic 35.0%
TAGACCAGTTTGATATACGA+AGG - chr3.2:25760794-25760813 MS.gene63561:CDS 35.0%
TCAAATAAGCCAATCTGAAC+AGG - chr3.2:25759173-25759192 MS.gene63561:intron 35.0%
TCACCAATAGGATTATCACA+CGG + chr3.2:25758714-25758733 None:intergenic 35.0%
TGCTTAAACTCTATGGGTTT+AGG - chr3.2:25760704-25760723 MS.gene63561:CDS 35.0%
TGGTCCTAAGATCCTTAATT+GGG - chr3.2:25758590-25758609 MS.gene63561:CDS 35.0%
TTCTCTCAGTATCCCAATTA+AGG + chr3.2:25758605-25758624 None:intergenic 35.0%
TTGGTCCTAAGATCCTTAAT+TGG - chr3.2:25758589-25758608 MS.gene63561:CDS 35.0%
! AACTGGTCTACAAACTCTAA+AGG + chr3.2:25760784-25760803 None:intergenic 35.0%
! ATTGGTGATCTAAGAGTTGA+AGG + chr3.2:25759583-25759602 None:intergenic 35.0%
! TAACCGATGAAAGCATAAGA+TGG + chr3.2:25759850-25759869 None:intergenic 35.0%
!! ATGATGGAAAAGTATCATCC+GGG - chr3.2:25760550-25760569 MS.gene63561:CDS 35.0%
!! ATTTTGACGGCAAATCTCAA+AGG - chr3.2:25760382-25760401 MS.gene63561:CDS 35.0%
!! GATGATGGAAAAGTATCATC+CGG - chr3.2:25760549-25760568 MS.gene63561:CDS 35.0%
!!! TGTGCTGGTTGTTCTTTTTT+GGG + chr3.2:25758277-25758296 None:intergenic 35.0%
!!! TTTTAGGACTTAACAATCCC+CGG + chr3.2:25760732-25760751 None:intergenic 35.0%
AACATGAGCCTTCGAATCAT+GGG + chr3.2:25760100-25760119 None:intergenic 40.0%
AGACTGTTCGGTAGAACTTT+CGG + chr3.2:25759127-25759146 None:intergenic 40.0%
AGCAGAGTAAAGATGGAGTT+TGG + chr3.2:25759774-25759793 None:intergenic 40.0%
ATATGATACTGCAGGTTGCA+TGG - chr3.2:25760010-25760029 MS.gene63561:intron 40.0%
ATTTGCATGGTTATTGGGCT+GGG - chr3.2:25760506-25760525 MS.gene63561:CDS 40.0%
CAAAAAAGAACAACCAGCAC+AGG - chr3.2:25758276-25758295 MS.gene63561:CDS 40.0%
CAGTCTCACAAAACTAATGC+TGG - chr3.2:25759141-25759160 MS.gene63561:intron 40.0%
CCAGTAAGAAGCAAAATCCT+TGG + chr3.2:25758678-25758697 None:intergenic 40.0%
CCCACAAAATGTGTCACAAA+CGG + chr3.2:25760595-25760614 None:intergenic 40.0%
GATCTGTCATATGATACTGC+AGG - chr3.2:25760002-25760021 MS.gene63561:intron 40.0%
GCAGAGTAAAGATGGAGTTT+GGG + chr3.2:25759773-25759792 None:intergenic 40.0%
GCATAAGATGGAAAAGCAGT+AGG + chr3.2:25759838-25759857 None:intergenic 40.0%
GGCTTCCCCTTAACAAAATT+AGG + chr3.2:25758657-25758676 None:intergenic 40.0%
GTATGTGTTTGGTTGTTGTG+TGG - chr3.2:25759470-25759489 MS.gene63561:intron 40.0%
GTCAAAGAAGGACAAATGGA+TGG - chr3.2:25760456-25760475 MS.gene63561:CDS 40.0%
GTTGCCTTCGTATATCAAAC+TGG + chr3.2:25760801-25760820 None:intergenic 40.0%
TAACATGAGCCTTCGAATCA+TGG + chr3.2:25760101-25760120 None:intergenic 40.0%
TAATCTCCATAACTCCCACA+AGG + chr3.2:25760625-25760644 None:intergenic 40.0%
TATTTGCATGGTTATTGGGC+TGG - chr3.2:25760505-25760524 MS.gene63561:CDS 40.0%
TGATCGGTATGAAGAGATGA+TGG - chr3.2:25760534-25760553 MS.gene63561:CDS 40.0%
TGATGCATTCTTCACTGACA+TGG - chr3.2:25760159-25760178 MS.gene63561:intron 40.0%
TGCTGTCAAAGAAGGACAAA+TGG - chr3.2:25760452-25760471 MS.gene63561:CDS 40.0%
TGTTGTTCGAGCAGAATTCT+TGG - chr3.2:25760245-25760264 MS.gene63561:intron 40.0%
TTCTGCTCGAACAACAAATC+AGG + chr3.2:25760241-25760260 None:intergenic 40.0%
! ATTTTGTTAAGGGGAAGCCA+AGG - chr3.2:25758658-25758677 MS.gene63561:CDS 40.0%
! CCAAGGATTTTGCTTCTTAC+TGG - chr3.2:25758675-25758694 MS.gene63561:CDS 40.0%
! CCGTTTGTGACACATTTTGT+GGG - chr3.2:25760592-25760611 MS.gene63561:CDS 40.0%
! CGTTTGTGACACATTTTGTG+GGG - chr3.2:25760593-25760612 MS.gene63561:CDS 40.0%
! GTTGGATTTGCTTGATGCTT+GGG - chr3.2:25760315-25760334 MS.gene63561:intron 40.0%
! GTTTGAGGCTGATGATCAAT+CGG - chr3.2:25760414-25760433 MS.gene63561:CDS 40.0%
! TTCCTGATCCGCTTGATTTT+AGG + chr3.2:25760748-25760767 None:intergenic 40.0%
!! AAAAGTATCATCCGGGGTTA+GGG - chr3.2:25760557-25760576 MS.gene63561:CDS 40.0%
!! TGATGGAAAAGTATCATCCG+GGG - chr3.2:25760551-25760570 MS.gene63561:CDS 40.0%
!! TTTTGTTTCGCAATTGCCAG+TGG - chr3.2:25760290-25760309 MS.gene63561:intron 40.0%
!!! CTGTGCTGGTTGTTCTTTTT+TGG + chr3.2:25758278-25758297 None:intergenic 40.0%
AAAAGAACAACCAGCACAGG+AGG - chr3.2:25758279-25758298 MS.gene63561:CDS 45.0%
AACTCTATGGGTTTAGGCAC+CGG - chr3.2:25760710-25760729 MS.gene63561:CDS 45.0%
ACCAAATCCACTCCACTTCA+GGG + chr3.2:25760129-25760148 None:intergenic 45.0%
AGAGAGATGCCTTAGTAGCA+TGG - chr3.2:25760651-25760670 MS.gene63561:CDS 45.0%
ATGCCTTAGTAGCATGGAGA+GGG - chr3.2:25760657-25760676 MS.gene63561:CDS 45.0%
ATGGAGTTTGGGTGAGCAAT+TGG + chr3.2:25759762-25759781 None:intergenic 45.0%
CAGATGGATCGGAATCAGAT+CGG + chr3.2:25758521-25758540 None:intergenic 45.0%
CATGTTATCACACCCTGAAG+TGG - chr3.2:25760114-25760133 MS.gene63561:intron 45.0%
CCAAATTGCCCATGATTCGA+AGG - chr3.2:25760089-25760108 MS.gene63561:intron 45.0%
CCTTCGAATCATGGGCAATT+TGG + chr3.2:25760092-25760111 None:intergenic 45.0%
CTGATTCCGATCAGATGGAT+CGG + chr3.2:25758532-25758551 None:intergenic 45.0%
CTGATTCCGATCCATCTGAT+CGG - chr3.2:25758523-25758542 MS.gene63561:CDS 45.0%
CTTGGATCGCAATCAACACA+GGG - chr3.2:25760263-25760282 MS.gene63561:intron 45.0%
GAAGGACAAATGGATGGAGA+AGG - chr3.2:25760462-25760481 MS.gene63561:CDS 45.0%
GATATACGAAGGCAACATGC+AGG - chr3.2:25760805-25760824 MS.gene63561:CDS 45.0%
GGGATACTGAGAGAACAAGT+TGG - chr3.2:25758610-25758629 MS.gene63561:CDS 45.0%
GTCCTAAAATCAAGCGGATC+AGG - chr3.2:25760743-25760762 MS.gene63561:CDS 45.0%
TCTTGGATCGCAATCAACAC+AGG - chr3.2:25760262-25760281 MS.gene63561:intron 45.0%
TGACGGCAAATCTCAAAGGA+AGG - chr3.2:25760386-25760405 MS.gene63561:CDS 45.0%
TGTGTACAACATGGCTCACT+TGG - chr3.2:25760042-25760061 MS.gene63561:intron 45.0%
! AAAGTATCATCCGGGGTTAG+GGG - chr3.2:25760558-25760577 MS.gene63561:CDS 45.0%
! CGTTGGATTTGCTTGATGCT+TGG - chr3.2:25760314-25760333 MS.gene63561:intron 45.0%
! CTACTAAGGCATCTCTCTAC+TGG + chr3.2:25760649-25760668 None:intergenic 45.0%
! GCCGTTTGTGACACATTTTG+TGG - chr3.2:25760591-25760610 MS.gene63561:CDS 45.0%
! GGAGAGGGCTTTCAATTTTG+CGG - chr3.2:25760672-25760691 MS.gene63561:CDS 45.0%
! GGAGGCTGGAAAGATTTTGA+CGG - chr3.2:25760369-25760388 MS.gene63561:CDS 45.0%
! GTTAGTTTCCTCGATGACAG+CGG + chr3.2:25758481-25758500 None:intergenic 45.0%
! TGTAAGCCTTGTGGGAGTTA+TGG - chr3.2:25760616-25760635 MS.gene63561:CDS 45.0%
!! GAAAAGTATCATCCGGGGTT+AGG - chr3.2:25760556-25760575 MS.gene63561:CDS 45.0%
!! GAGGTTGGTGTTGTTGTTGT+TGG + chr3.2:25758309-25758328 None:intergenic 45.0%
!! TAAATATAAAGATTATAATA+TGG - chr3.2:25760201-25760220 MS.gene63561:intron 5.0%
AAGCCCTCTCCATGCTACTA+AGG + chr3.2:25760663-25760682 None:intergenic 50.0%
AATCAGATCGGATCTCAGCG+AGG + chr3.2:25758509-25758528 None:intergenic 50.0%
ACATGGAGCTTGCAGGTTAC+TGG - chr3.2:25760065-25760084 MS.gene63561:intron 50.0%
ACTCTATGGGTTTAGGCACC+GGG - chr3.2:25760711-25760730 MS.gene63561:CDS 50.0%
AGTGTACGGTTACGTGAGGT+TGG + chr3.2:25758324-25758343 None:intergenic 50.0%
ATCGGATCTCAGCGAGGATA+CGG + chr3.2:25758503-25758522 None:intergenic 50.0%
CAACATGGCTCACTTGGACA+TGG - chr3.2:25760048-25760067 MS.gene63561:intron 50.0%
CAAGCAAATCCAACGACCAC+TGG + chr3.2:25760309-25760328 None:intergenic 50.0%
CACCAAATCCACTCCACTTC+AGG + chr3.2:25760130-25760149 None:intergenic 50.0%
CATGGAGCTTGCAGGTTACT+GGG - chr3.2:25760066-25760085 MS.gene63561:intron 50.0%
GATGCCTTAGTAGCATGGAG+AGG - chr3.2:25760656-25760675 MS.gene63561:CDS 50.0%
GGATTATCACACGGTTTCGG+AGG + chr3.2:25758705-25758724 None:intergenic 50.0%
GGATTGTTACGAAACCGCAG+AGG + chr3.2:25758398-25758417 None:intergenic 50.0%
GTAACAATCCTCGTCCTACG+TGG - chr3.2:25758408-25758427 MS.gene63561:CDS 50.0%
TATCACACCCTGAAGTGGAG+TGG - chr3.2:25760119-25760138 MS.gene63561:intron 50.0%
TCCTCTCGAATTGGGCCTTT+CGG + chr3.2:25760352-25760371 None:intergenic 50.0%
TCGGTCTGATTCCGATCAGA+TGG + chr3.2:25758537-25758556 None:intergenic 50.0%
TGATCATCAGCCTCAAACGC+TGG + chr3.2:25760412-25760431 None:intergenic 50.0%
TTCCAGCCTCCTCTCGAATT+GGG + chr3.2:25760360-25760379 None:intergenic 50.0%
TTTCCAGCCTCCTCTCGAAT+TGG + chr3.2:25760361-25760380 None:intergenic 50.0%
TTTGTGGGGTGTAAGCCTTG+TGG - chr3.2:25760607-25760626 MS.gene63561:CDS 50.0%
! ACCCTGAAGTGGAGTGGATT+TGG - chr3.2:25760125-25760144 MS.gene63561:intron 50.0%
! CTGAAGTGGAGTGGATTTGG+TGG - chr3.2:25760128-25760147 MS.gene63561:intron 50.0%
! GGCAAAGTGCCTGTTCAGAT+TGG + chr3.2:25759185-25759204 None:intergenic 50.0%
! TTGTGGGGTGTAAGCCTTGT+GGG - chr3.2:25760608-25760627 MS.gene63561:CDS 50.0%
! TTTTGGATCTGACGTCCACG+TGG + chr3.2:25758348-25758367 None:intergenic 50.0%
!! AGTGGAGTGGATTTGGTGGA+TGG - chr3.2:25760132-25760151 MS.gene63561:intron 50.0%
!! ATTGGGCTGGGTTGGTTGAT+CGG - chr3.2:25760518-25760537 MS.gene63561:CDS 50.0%
!! TGTTGGTAATCCTCCTGTGC+TGG + chr3.2:25758292-25758311 None:intergenic 50.0%
AATTGGGCCTTTCGGACCCA+TGG + chr3.2:25760344-25760363 None:intergenic 55.0%
ATTGGGCCTTTCGGACCCAT+GGG + chr3.2:25760343-25760362 None:intergenic 55.0%
CAAAGGAAGGCCAGCGTTTG+AGG - chr3.2:25760399-25760418 MS.gene63561:CDS 55.0%
CACTTGGACATGGAGCTTGC+AGG - chr3.2:25760058-25760077 MS.gene63561:intron 55.0%
CTCGTCCTACGTGGCACAAT+CGG - chr3.2:25758417-25758436 MS.gene63561:CDS 55.0%
CTTGATGCTTGGGCTCCCAT+GGG - chr3.2:25760325-25760344 MS.gene63561:CDS 55.0%
GAAAGGCCCAATTCGAGAGG+AGG - chr3.2:25760351-25760370 MS.gene63561:CDS 55.0%
GGCACAATCGGCGTTAACCT+CGG - chr3.2:25758429-25758448 MS.gene63561:CDS 55.0%
TCCGAAAGGCCCAATTCGAG+AGG - chr3.2:25760348-25760367 MS.gene63561:CDS 55.0%
TCGCAATTGCCAGTGGTCGT+TGG - chr3.2:25760297-25760316 MS.gene63561:intron 55.0%
TGGCAGTGTACGGTTACGTG+AGG + chr3.2:25758328-25758347 None:intergenic 55.0%
! AAGGCAACATGCAGGCACTG+TGG - chr3.2:25760813-25760832 MS.gene63561:CDS 55.0%
! CTCTATGGGTTTAGGCACCG+GGG - chr3.2:25760712-25760731 MS.gene63561:CDS 55.0%
! GCATGGTTATTGGGCTGGGT+TGG - chr3.2:25760510-25760529 MS.gene63561:CDS 55.0%
! TAACGCCGATTGTGCCACGT+AGG + chr3.2:25758425-25758444 None:intergenic 55.0%
ATCCGGGGTTAGGGGATGAG+AGG - chr3.2:25760566-25760585 MS.gene63561:CDS 60.0%
CACCTCTCATCCCCTAACCC+CGG + chr3.2:25760571-25760590 None:intergenic 60.0%
CGATTGTGCCACGTAGGACG+AGG + chr3.2:25758419-25758438 None:intergenic 60.0%
CGGCACATCACAGAACGACG+CGG - chr3.2:25758449-25758468 MS.gene63561:CDS 60.0%
CGTAACCGTACACTGCCACG+TGG - chr3.2:25758330-25758349 MS.gene63561:CDS 60.0%
CGTCGTTCTGTGATGTGCCG+AGG + chr3.2:25758449-25758468 None:intergenic 60.0%
GACGTCCACGTGGCAGTGTA+CGG + chr3.2:25758338-25758357 None:intergenic 60.0%
GCTTGATGCTTGGGCTCCCA+TGG - chr3.2:25760324-25760343 MS.gene63561:CDS 60.0%
GGTTAACGCCGCTGTCATCG+AGG - chr3.2:25758470-25758489 MS.gene63561:CDS 60.0%
CGGGGTTAGGGGATGAGAGG+TGG - chr3.2:25760569-25760588 MS.gene63561:CDS 65.0%
GGCCCAATTCGAGAGGAGGC+TGG - chr3.2:25760355-25760374 MS.gene63561:CDS 65.0%
TGGGCTCCCATGGGTCCGAA+AGG - chr3.2:25760334-25760353 MS.gene63561:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 25758252 25760849 25758252 ID=MS.gene63561
chr3.2 mRNA 25758252 25760849 25758252 ID=MS.gene63561.t1;Parent=MS.gene63561
chr3.2 exon 25760323 25760849 25760323 ID=MS.gene63561.t1.exon1;Parent=MS.gene63561.t1
chr3.2 CDS 25760323 25760849 25760323 ID=cds.MS.gene63561.t1;Parent=MS.gene63561.t1
chr3.2 exon 25758252 25759077 25758252 ID=MS.gene63561.t1.exon2;Parent=MS.gene63561.t1
chr3.2 CDS 25758252 25759077 25758252 ID=cds.MS.gene63561.t1;Parent=MS.gene63561.t1
Gene Sequence

>MS.gene63561

ATGGGACAAGAAAACAACTTAACCCAAAAAAGAACAACCAGCACAGGAGGATTACCAACAACAACAACACCAACCTCACGTAACCGTACACTGCCACGTGGACGTCAGATCCAAAAAACATTCAACAACATAAAGATCACAATCCTCTGCGGTTTCGTAACAATCCTCGTCCTACGTGGCACAATCGGCGTTAACCTCGGCACATCACAGAACGACGCGGTTAACGCCGCTGTCATCGAGGAAACTAACCGTATCCTCGCTGAGATCCGATCTGATTCCGATCCATCTGATCGGAATCAGACCGAAACTTTTATGAGTTTGAATGAAACTTATGCTCTTGGTCCTAAGATCCTTAATTGGGATACTGAGAGAACAAGTTGGTTAGATAAGAACCGTGAATATCCTAATTTTGTTAAGGGGAAGCCAAGGATTTTGCTTCTTACTGGTTCGCCTCCGAAACCGTGTGATAATCCTATTGGTGATCATTATCTTTTGAAATCTATCAAGAATAAGATTGATTATTGCAGGTTAGTGTTATAAACATTTCAATTTTTATATAATGGAATTGAAATTTTGTGTTGTAATGTGTAGTGTAAATTATTCAGTTGTGTTAGTTTAGATATAGTTTATGTTTAATTTCTATCAGTACATTTAGTTTGTGTTTGATTTCTACAGTTTATAACATAAGCGCTTATCATTTATCATGATAAGCGGGCTTATGTGTAAGCTTGCATAAGCTTTTTTTTAGATCAAATGATAAAATAATATTAAAGTGTTTTTCTCTATGATATAAGTTGTTTTTATATAAGCTATATTGGAGAACTTATGAAAATAAGTTGAAAAATGCTTATGAAAATTGTCATAAGCTGTTTCCGAAAGTTCTACCGAACAGTCTCACAAAACTAATGCTGGTTGATAAGCTCAAATAAGCCAATCTGAACAGGCACTTTGCCTTTAAAGCTCGTTTTTATAGGCAAATTTATAATATATTAGTGCATATATTAAAGAGTAACTTTTGTGTTATCTTAAAGAAAGTTTCGAAGTTTAACACACTTTAGACTAACAATGTAGCATAAATTAATAATTACTTCACTTTGAAACTCAATTTTAACTCTGAATTTTGTAAATCAAGCTCACTCAAAATCGAGTTTACAAATGCTTGCTCAAAGTTGACTTTACAAATAATGTGTTTGGTTTCTATGATTGCATTTGCATATAGTATGTGTTTGGTTGTTGTGTGGTTAAATTGATTTTTTGTTCAAAAATTTACGGGCAAATGTTAGTAAATTAGTGGTTATTTTACTTTTTAGGATTTGGTGATGAGAATTCCTTCAACTCTTAGATCACCAATTGAGTTGTCTAACAAAAAATAGCTTCTGTGATAGCTTGAAAACTGTTTACGAAGTTTCACACACTTTAGAGTAAAAGCATAACGTAAATTACTTCACTTGAAGCTCTACTTCAACTCGATCAATTTTGTAAATCAAGCTAATTCAAATTTGAGTTTCCAATTGCTCACCCAAACTCCATCTTTACTCTGCTCTTTTATATTTGATTTCACTTTCAGTTTAATGCAATTAAATCCTACTGCTTTTCCATCTTATGCTTTCATCGGTTATTCAAAACGGCTCAGTTTACAGAAATATTGCCTGAAGTGAAGAAACTTATTTGCTCTATAAAGTTTGAATTTGACTTGAGCTGATTCTGAATACATCTGAATTAACATTATAAAGCTTGTCTATTATATTCTGATCTGTCATATGATACTGCAGGTTGCATGGCATTGAAATTGTGTACAACATGGCTCACTTGGACATGGAGCTTGCAGGTTACTGGGCCAAATTGCCCATGATTCGAAGGCTCATGTTATCACACCCTGAAGTGGAGTGGATTTGGTGGATGGACAGTGATGCATTCTTCACTGACATGGTGTTTGAGCTTCCCATGAGTAAATATAAAGATTATAATATGGTTATTCATGGGTATCCTGATTTGTTGTTCGAGCAGAATTCTTGGATCGCAATCAACACAGGGAGCTTTTTGTTTCGCAATTGCCAGTGGTCGTTGGATTTGCTTGATGCTTGGGCTCCCATGGGTCCGAAAGGCCCAATTCGAGAGGAGGCTGGAAAGATTTTGACGGCAAATCTCAAAGGAAGGCCAGCGTTTGAGGCTGATGATCAATCGGCGTTGATATATTTATTGCTGTCAAAGAAGGACAAATGGATGGAGAAGGTATTTCTTGAGAATTCTTTCTATTTGCATGGTTATTGGGCTGGGTTGGTTGATCGGTATGAAGAGATGATGGAAAAGTATCATCCGGGGTTAGGGGATGAGAGGTGGCCGTTTGTGACACATTTTGTGGGGTGTAAGCCTTGTGGGAGTTATGGAGATTATCCAGTAGAGAGATGCCTTAGTAGCATGGAGAGGGCTTTCAATTTTGCGGATAATCAAGTGCTTAAACTCTATGGGTTTAGGCACCGGGGATTGTTAAGTCCTAAAATCAAGCGGATCAGGAACGAGACGATTACTCCTTTAGAGTTTGTAGACCAGTTTGATATACGAAGGCAACATGCAGGCACTGTGGAACCAAAAAATTAG

Protein sequence

>MS.gene63561.t1

MGQENNLTQKRTTSTGGLPTTTTPTSRNRTLPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNLGTSQNDAVNAAVIEETNRILAEIRSDSDPSDRNQTETFMSLNETYALGPKILNWDTERTSWLDKNREYPNFVKGKPRILLLTGSPPKPCDNPIGDHYLLKSIKNKIDYCRLHGIEIVYNMAHLDMELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAFFTDMVFELPMSKYKDYNMVIHGYPDLLFEQNSWIAINTGSFLFRNCQWSLDLLDAWAPMGPKGPIREEAGKILTANLKGRPAFEADDQSALIYLLLSKKDKWMEKVFLENSFYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLKLYGFRHRGLLSPKIKRIRNETITPLEFVDQFDIRRQHAGTVEPKN