Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63561.t1 | XP_013459411.1 | 95.1 | 453 | 19 | 1 | 1 | 450 | 1 | 453 | 4.70E-256 | 893.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63561.t1 | Q9LF80 | 77.0 | 457 | 98 | 3 | 1 | 450 | 1 | 457 | 4.1e-216 | 751.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63561.t1 | A0A072UV09 | 95.1 | 453 | 19 | 1 | 1 | 450 | 1 | 453 | 3.4e-256 | 893.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059007 | MS.gene63561 | 0.802831 | 4.66E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63561.t1 | MTR_3g037340 | 98.896 | 453 | 2 | 1 | 1 | 450 | 1 | 453 | 0.0 | 932 |
MS.gene63561.t1 | MTR_4g108940 | 83.850 | 452 | 67 | 4 | 1 | 450 | 1 | 448 | 0.0 | 777 |
MS.gene63561.t1 | MTR_7g108675 | 57.301 | 452 | 156 | 5 | 33 | 447 | 10 | 461 | 0.0 | 550 |
MS.gene63561.t1 | MTR_4g119880 | 58.701 | 431 | 153 | 4 | 33 | 438 | 10 | 440 | 0.0 | 543 |
MS.gene63561.t1 | MTR_8g058553 | 59.012 | 405 | 129 | 5 | 33 | 400 | 10 | 414 | 3.76e-178 | 509 |
MS.gene63561.t1 | MTR_4g097240 | 45.430 | 372 | 155 | 7 | 94 | 432 | 75 | 431 | 1.72e-111 | 335 |
MS.gene63561.t1 | MTR_5g015260 | 40.000 | 425 | 206 | 10 | 29 | 414 | 17 | 431 | 2.90e-106 | 322 |
MS.gene63561.t1 | MTR_4g097230 | 44.828 | 348 | 152 | 8 | 110 | 422 | 73 | 415 | 9.12e-100 | 305 |
MS.gene63561.t1 | MTR_4g108950 | 61.417 | 127 | 5 | 1 | 283 | 409 | 1 | 83 | 7.39e-44 | 149 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63561.t1 | AT5G07720 | 77.024 | 457 | 98 | 3 | 1 | 450 | 1 | 457 | 0.0 | 752 |
MS.gene63561.t1 | AT1G74380 | 77.511 | 458 | 94 | 5 | 1 | 450 | 1 | 457 | 0.0 | 727 |
MS.gene63561.t1 | AT1G18690 | 65.226 | 486 | 102 | 5 | 27 | 445 | 26 | 511 | 0.0 | 635 |
MS.gene63561.t1 | AT1G18690 | 65.226 | 486 | 102 | 5 | 27 | 445 | 26 | 511 | 0.0 | 635 |
MS.gene63561.t1 | AT1G18690 | 65.226 | 486 | 102 | 5 | 27 | 445 | 26 | 511 | 0.0 | 635 |
MS.gene63561.t1 | AT1G18690 | 65.226 | 486 | 102 | 5 | 27 | 445 | 26 | 511 | 0.0 | 635 |
MS.gene63561.t1 | AT3G62720 | 58.257 | 436 | 152 | 5 | 33 | 438 | 10 | 445 | 0.0 | 535 |
MS.gene63561.t1 | AT3G62720 | 58.257 | 436 | 152 | 5 | 33 | 438 | 10 | 445 | 0.0 | 535 |
MS.gene63561.t1 | AT4G02500 | 58.581 | 437 | 150 | 5 | 33 | 438 | 10 | 446 | 0.0 | 526 |
MS.gene63561.t1 | AT2G22900 | 41.176 | 374 | 173 | 8 | 80 | 414 | 66 | 431 | 4.27e-95 | 294 |
MS.gene63561.t1 | AT4G37690 | 41.570 | 344 | 157 | 5 | 110 | 414 | 76 | 414 | 5.26e-95 | 293 |
MS.gene63561.t1 | AT4G38310 | 45.192 | 104 | 52 | 3 | 110 | 211 | 17 | 117 | 5.52e-24 | 97.1 |
Find 131 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCTATTTGCATGGTTAT+TGG | 0.211134 | 3.2:-25758579 | MS.gene63561:CDS |
ACATGGAGCTTGCAGGTTAC+TGG | 0.215014 | 3.2:-25759014 | MS.gene63561:CDS |
AATCAAGTGCTTAAACTCTA+TGG | 0.218743 | 3.2:-25758382 | MS.gene63561:CDS |
TTTCTATTTGCATGGTTATT+GGG | 0.219207 | 3.2:-25758578 | MS.gene63561:CDS |
CCTTCGAATCATGGGCAATT+TGG | 0.225308 | 3.2:+25758990 | None:intergenic |
GGCTTCCCCTTAACAAAATT+AGG | 0.245317 | 3.2:+25760425 | None:intergenic |
TTCTCTCAGTATCCCAATTA+AGG | 0.247028 | 3.2:+25760477 | None:intergenic |
TTGGTCCTAAGATCCTTAAT+TGG | 0.264667 | 3.2:-25760490 | MS.gene63561:CDS |
CACCAAATCCACTCCACTTC+AGG | 0.295318 | 3.2:+25758952 | None:intergenic |
CGTTGGATTTGCTTGATGCT+TGG | 0.301608 | 3.2:-25758765 | MS.gene63561:CDS |
TGTTGTTCGAGCAGAATTCT+TGG | 0.311777 | 3.2:-25758834 | MS.gene63561:CDS |
TTTCCAGCCTCCTCTCGAAT+TGG | 0.317408 | 3.2:+25758721 | None:intergenic |
GAAAAGTATCATCCGGGGTT+AGG | 0.321720 | 3.2:-25758523 | MS.gene63561:CDS |
GTTGGATTTGCTTGATGCTT+GGG | 0.326654 | 3.2:-25758764 | MS.gene63561:CDS |
GTATCCCAATTAAGGATCTT+AGG | 0.329038 | 3.2:+25760485 | None:intergenic |
TCCTCTCGAATTGGGCCTTT+CGG | 0.333238 | 3.2:+25758730 | None:intergenic |
TATTTGCATGGTTATTGGGC+TGG | 0.334350 | 3.2:-25758574 | MS.gene63561:CDS |
AGAATAAGATTGATTATTGC+AGG | 0.335344 | 3.2:-25760322 | MS.gene63561:intron |
ATTCAAACTCATAAAAGTTT+CGG | 0.342769 | 3.2:+25760526 | None:intergenic |
CACTTGGACATGGAGCTTGC+AGG | 0.363992 | 3.2:-25759021 | MS.gene63561:CDS |
GATTATAATATGGTTATTCA+TGG | 0.367610 | 3.2:-25758868 | MS.gene63561:CDS |
TTCCAGCCTCCTCTCGAATT+GGG | 0.373721 | 3.2:+25758722 | None:intergenic |
TAAATATAAAGATTATAATA+TGG | 0.375741 | 3.2:-25758878 | MS.gene63561:CDS |
AAAAGTATCATCCGGGGTTA+GGG | 0.380704 | 3.2:-25758522 | MS.gene63561:CDS |
TTGAATGAAACTTATGCTCT+TGG | 0.381407 | 3.2:-25760509 | MS.gene63561:CDS |
GCTTGATGCTTGGGCTCCCA+TGG | 0.388448 | 3.2:-25758755 | MS.gene63561:CDS |
AAAAGATAATGATCACCAAT+AGG | 0.391177 | 3.2:+25760356 | None:intergenic |
TGCTTAAACTCTATGGGTTT+AGG | 0.393742 | 3.2:-25758375 | MS.gene63561:CDS |
ACCCTGAAGTGGAGTGGATT+TGG | 0.394154 | 3.2:-25758954 | MS.gene63561:CDS |
ATTGGGCTGGGTTGGTTGAT+CGG | 0.403121 | 3.2:-25758561 | MS.gene63561:CDS |
GTCCTAAAATCAAGCGGATC+AGG | 0.412056 | 3.2:-25758336 | MS.gene63561:CDS |
AACTCTATGGGTTTAGGCAC+CGG | 0.412162 | 3.2:-25758369 | MS.gene63561:CDS |
CAAAGGAAGGCCAGCGTTTG+AGG | 0.413207 | 3.2:-25758680 | MS.gene63561:CDS |
TTGTGGGGTGTAAGCCTTGT+GGG | 0.414516 | 3.2:-25758471 | MS.gene63561:CDS |
CTACTAAGGCATCTCTCTAC+TGG | 0.417101 | 3.2:+25758433 | None:intergenic |
TGTAAGCCTTGTGGGAGTTA+TGG | 0.420456 | 3.2:-25758463 | MS.gene63561:CDS |
ATAGGATTATCACACGGTTT+CGG | 0.428352 | 3.2:+25760374 | None:intergenic |
GAGGTTGGTGTTGTTGTTGT+TGG | 0.429334 | 3.2:+25760773 | None:intergenic |
CATGGAGCTTGCAGGTTACT+GGG | 0.431346 | 3.2:-25759013 | MS.gene63561:CDS |
TGCTGTCAAAGAAGGACAAA+TGG | 0.438378 | 3.2:-25758627 | MS.gene63561:CDS |
CTCGTCCTACGTGGCACAAT+CGG | 0.441138 | 3.2:-25760662 | MS.gene63561:CDS |
ATTTGCATGGTTATTGGGCT+GGG | 0.441189 | 3.2:-25758573 | MS.gene63561:CDS |
AAACCGTGTGATAATCCTAT+TGG | 0.442105 | 3.2:-25760371 | MS.gene63561:CDS |
TGGTCCTAAGATCCTTAATT+GGG | 0.442563 | 3.2:-25760489 | MS.gene63561:CDS |
TGTTGGTAATCCTCCTGTGC+TGG | 0.443020 | 3.2:+25760790 | None:intergenic |
CTTGATGCTTGGGCTCCCAT+GGG | 0.444480 | 3.2:-25758754 | MS.gene63561:CDS |
TTCTGCTCGAACAACAAATC+AGG | 0.448355 | 3.2:+25758841 | None:intergenic |
ATCGGATCTCAGCGAGGATA+CGG | 0.453679 | 3.2:+25760579 | None:intergenic |
GCATGGTTATTGGGCTGGGT+TGG | 0.459215 | 3.2:-25758569 | MS.gene63561:CDS |
TAACATGAGCCTTCGAATCA+TGG | 0.459737 | 3.2:+25758981 | None:intergenic |
AATTGGGCCTTTCGGACCCA+TGG | 0.460863 | 3.2:+25758738 | None:intergenic |
ATATTTATTGCTGTCAAAGA+AGG | 0.460969 | 3.2:-25758635 | MS.gene63561:CDS |
TGTGTACAACATGGCTCACT+TGG | 0.467982 | 3.2:-25759037 | MS.gene63561:CDS |
GTTGCCTTCGTATATCAAAC+TGG | 0.478121 | 3.2:+25758281 | None:intergenic |
TAACAAAATTAGGATATTCA+CGG | 0.478655 | 3.2:+25760435 | None:intergenic |
ATAATCTTTATATTTACTCA+TGG | 0.485294 | 3.2:+25758885 | None:intergenic |
ATCAAGTGCTTAAACTCTAT+GGG | 0.487154 | 3.2:-25758381 | MS.gene63561:CDS |
GAGAATTCTTTCTATTTGCA+TGG | 0.494521 | 3.2:-25758586 | MS.gene63561:CDS |
AAGCCCTCTCCATGCTACTA+AGG | 0.496820 | 3.2:+25758419 | None:intergenic |
GATGATGGAAAAGTATCATC+CGG | 0.501280 | 3.2:-25758530 | MS.gene63561:CDS |
ACCAAATCCACTCCACTTCA+GGG | 0.502114 | 3.2:+25758953 | None:intergenic |
CCCACAAAATGTGTCACAAA+CGG | 0.510101 | 3.2:+25758487 | None:intergenic |
TCGCAATTGCCAGTGGTCGT+TGG | 0.510685 | 3.2:-25758782 | MS.gene63561:CDS |
ACTCTATGGGTTTAGGCACC+GGG | 0.517276 | 3.2:-25758368 | MS.gene63561:CDS |
GGCCCAATTCGAGAGGAGGC+TGG | 0.523771 | 3.2:-25758724 | MS.gene63561:CDS |
AACATGAGCCTTCGAATCAT+GGG | 0.527557 | 3.2:+25758982 | None:intergenic |
TCGGTCTGATTCCGATCAGA+TGG | 0.529115 | 3.2:+25760545 | None:intergenic |
GTTTGAGGCTGATGATCAAT+CGG | 0.529154 | 3.2:-25758665 | MS.gene63561:CDS |
CAAGCAAATCCAACGACCAC+TGG | 0.529363 | 3.2:+25758773 | None:intergenic |
TGATCATCAGCCTCAAACGC+TGG | 0.531307 | 3.2:+25758670 | None:intergenic |
TAATCTTTATATTTACTCAT+GGG | 0.532867 | 3.2:+25758886 | None:intergenic |
AACTGGTCTACAAACTCTAA+AGG | 0.539086 | 3.2:+25758298 | None:intergenic |
GACGTCCACGTGGCAGTGTA+CGG | 0.545246 | 3.2:+25760744 | None:intergenic |
ATTGGGCCTTTCGGACCCAT+GGG | 0.545353 | 3.2:+25758739 | None:intergenic |
ATTATAATATGGTTATTCAT+GGG | 0.546527 | 3.2:-25758867 | MS.gene63561:CDS |
CGGGGTTAGGGGATGAGAGG+TGG | 0.553753 | 3.2:-25758510 | MS.gene63561:CDS |
CCAGTAAGAAGCAAAATCCT+TGG | 0.555277 | 3.2:+25760404 | None:intergenic |
CCAAATTGCCCATGATTCGA+AGG | 0.557570 | 3.2:-25758990 | MS.gene63561:CDS |
AGAGAGATGCCTTAGTAGCA+TGG | 0.561542 | 3.2:-25758428 | MS.gene63561:CDS |
GGCACAATCGGCGTTAACCT+CGG | 0.562299 | 3.2:-25760650 | MS.gene63561:CDS |
TGGGCTCCCATGGGTCCGAA+AGG | 0.563049 | 3.2:-25758745 | MS.gene63561:CDS |
TGATCGGTATGAAGAGATGA+TGG | 0.569190 | 3.2:-25758545 | MS.gene63561:CDS |
GGATTATCACACGGTTTCGG+AGG | 0.569607 | 3.2:+25760377 | None:intergenic |
GTCAAAGAAGGACAAATGGA+TGG | 0.573047 | 3.2:-25758623 | MS.gene63561:CDS |
TCTTGGATCGCAATCAACAC+AGG | 0.574658 | 3.2:-25758817 | MS.gene63561:CDS |
CATGTTATCACACCCTGAAG+TGG | 0.577774 | 3.2:-25758965 | MS.gene63561:CDS |
CTGAAGTGGAGTGGATTTGG+TGG | 0.580330 | 3.2:-25758951 | MS.gene63561:CDS |
ATGATGGAAAAGTATCATCC+GGG | 0.583014 | 3.2:-25758529 | MS.gene63561:CDS |
AGTGTACGGTTACGTGAGGT+TGG | 0.583387 | 3.2:+25760758 | None:intergenic |
CAACATGGCTCACTTGGACA+TGG | 0.584694 | 3.2:-25759031 | MS.gene63561:CDS |
GAAGGACAAATGGATGGAGA+AGG | 0.593298 | 3.2:-25758617 | MS.gene63561:CDS |
ATGCCTTAGTAGCATGGAGA+GGG | 0.593651 | 3.2:-25758422 | MS.gene63561:CDS |
CACCTCTCATCCCCTAACCC+CGG | 0.593781 | 3.2:+25758511 | None:intergenic |
TGACGGCAAATCTCAAAGGA+AGG | 0.593858 | 3.2:-25758693 | MS.gene63561:CDS |
TAGACCAGTTTGATATACGA+AGG | 0.595190 | 3.2:-25758285 | MS.gene63561:CDS |
AGTGGAGTGGATTTGGTGGA+TGG | 0.596443 | 3.2:-25758947 | MS.gene63561:CDS |
CTGATTCCGATCAGATGGAT+CGG | 0.599712 | 3.2:+25760550 | None:intergenic |
CGATTGTGCCACGTAGGACG+AGG | 0.603186 | 3.2:+25760663 | None:intergenic |
GATATACGAAGGCAACATGC+AGG | 0.607469 | 3.2:-25758274 | MS.gene63561:CDS |
ATCCGGGGTTAGGGGATGAG+AGG | 0.609923 | 3.2:-25758513 | MS.gene63561:CDS |
AAAAGAACAACCAGCACAGG+AGG | 0.611682 | 3.2:-25760800 | MS.gene63561:CDS |
GGGATACTGAGAGAACAAGT+TGG | 0.615463 | 3.2:-25760469 | MS.gene63561:CDS |
CAGATGGATCGGAATCAGAT+CGG | 0.617890 | 3.2:+25760561 | None:intergenic |
ATATGATACTGCAGGTTGCA+TGG | 0.626424 | 3.2:-25759069 | MS.gene63561:intron |
TCCGAAAGGCCCAATTCGAG+AGG | 0.629140 | 3.2:-25758731 | MS.gene63561:CDS |
CGTCGTTCTGTGATGTGCCG+AGG | 0.629271 | 3.2:+25760633 | None:intergenic |
GAAAGGCCCAATTCGAGAGG+AGG | 0.629628 | 3.2:-25758728 | MS.gene63561:CDS |
AAAGTATCATCCGGGGTTAG+GGG | 0.636823 | 3.2:-25758521 | MS.gene63561:CDS |
CTGATTCCGATCCATCTGAT+CGG | 0.638243 | 3.2:-25760556 | MS.gene63561:CDS |
TTTGTGGGGTGTAAGCCTTG+TGG | 0.644111 | 3.2:-25758472 | MS.gene63561:CDS |
TGTTAAGTCCTAAAATCAAG+CGG | 0.644756 | 3.2:-25758342 | MS.gene63561:CDS |
GATGCCTTAGTAGCATGGAG+AGG | 0.645528 | 3.2:-25758423 | MS.gene63561:CDS |
CTTGGATCGCAATCAACACA+GGG | 0.648132 | 3.2:-25758816 | MS.gene63561:CDS |
TATCACACCCTGAAGTGGAG+TGG | 0.650624 | 3.2:-25758960 | MS.gene63561:CDS |
GTTAGTTTCCTCGATGACAG+CGG | 0.666536 | 3.2:+25760601 | None:intergenic |
GTAACAATCCTCGTCCTACG+TGG | 0.672440 | 3.2:-25760671 | MS.gene63561:CDS |
GGATTGTTACGAAACCGCAG+AGG | 0.680262 | 3.2:+25760684 | None:intergenic |
CTCTATGGGTTTAGGCACCG+GGG | 0.680557 | 3.2:-25758367 | MS.gene63561:CDS |
CATTGAAATTGTGTACAACA+TGG | 0.690436 | 3.2:-25759046 | MS.gene63561:CDS |
AATCAGATCGGATCTCAGCG+AGG | 0.690802 | 3.2:+25760573 | None:intergenic |
CGTAACCGTACACTGCCACG+TGG | 0.692950 | 3.2:-25760749 | MS.gene63561:CDS |
TGGCAGTGTACGGTTACGTG+AGG | 0.694238 | 3.2:+25760754 | None:intergenic |
TGATGCATTCTTCACTGACA+TGG | 0.695080 | 3.2:-25758920 | MS.gene63561:CDS |
TAATCTCCATAACTCCCACA+AGG | 0.704992 | 3.2:+25758457 | None:intergenic |
GGTTAACGCCGCTGTCATCG+AGG | 0.708089 | 3.2:-25760609 | MS.gene63561:CDS |
TGATGGAAAAGTATCATCCG+GGG | 0.711814 | 3.2:-25758528 | MS.gene63561:CDS |
ATAAAGATCACAATCCTCTG+CGG | 0.729589 | 3.2:-25760698 | MS.gene63561:CDS |
AAGGCAACATGCAGGCACTG+TGG | 0.731966 | 3.2:-25758266 | MS.gene63561:CDS |
TAACGCCGATTGTGCCACGT+AGG | 0.737361 | 3.2:+25760657 | None:intergenic |
CGGCACATCACAGAACGACG+CGG | 0.749199 | 3.2:-25760630 | MS.gene63561:CDS |
TCACCAATAGGATTATCACA+CGG | 0.755282 | 3.2:+25760368 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACATTTCAATTTTTATATAA+TGG | - | chr3.2:25758792-25758811 | MS.gene63561:CDS | 10.0% |
!!! | ATTTTTTGTTCAAAAATTTA+CGG | - | chr3.2:25759501-25759520 | MS.gene63561:intron | 10.0% |
!! | ATAATCTTTATATTTACTCA+TGG | + | chr3.2:25760197-25760216 | None:intergenic | 15.0% |
!! | ATTATAATATGGTTATTCAT+GGG | - | chr3.2:25760212-25760231 | MS.gene63561:intron | 15.0% |
!! | TAATCTTTATATTTACTCAT+GGG | + | chr3.2:25760196-25760215 | None:intergenic | 15.0% |
!!! | TGTTTTTATATAAGCTATAT+TGG | - | chr3.2:25759047-25759066 | MS.gene63561:CDS | 15.0% |
!!! | TTATTTTACTTTTTAGGATT+TGG | - | chr3.2:25759546-25759565 | MS.gene63561:intron | 15.0% |
!!! | TTTTTTGTTCAAAAATTTAC+GGG | - | chr3.2:25759502-25759521 | MS.gene63561:intron | 15.0% |
!! | ATTCAAACTCATAAAAGTTT+CGG | + | chr3.2:25758556-25758575 | None:intergenic | 20.0% |
!! | GATTATAATATGGTTATTCA+TGG | - | chr3.2:25760211-25760230 | MS.gene63561:intron | 20.0% |
!! | TAACAAAATTAGGATATTCA+CGG | + | chr3.2:25758647-25758666 | None:intergenic | 20.0% |
!! | TTATCATTTATCATGATAAG+CGG | - | chr3.2:25758943-25758962 | MS.gene63561:CDS | 20.0% |
!!! | AATATCCTAATTTTGTTAAG+GGG | - | chr3.2:25758649-25758668 | MS.gene63561:CDS | 20.0% |
!!! | GAATATCCTAATTTTGTTAA+GGG | - | chr3.2:25758648-25758667 | MS.gene63561:CDS | 20.0% |
!!! | TAGTGGTTATTTTACTTTTT+AGG | - | chr3.2:25759540-25759559 | MS.gene63561:intron | 20.0% |
!!! | TGAATATCCTAATTTTGTTA+AGG | - | chr3.2:25758647-25758666 | MS.gene63561:CDS | 20.0% |
!!! | TTATGTTGTTGAATGTTTTT+TGG | + | chr3.2:25758365-25758384 | None:intergenic | 20.0% |
! | AAAAGATAATGATCACCAAT+AGG | + | chr3.2:25758726-25758745 | None:intergenic | 25.0% |
! | AGAATAAGATTGATTATTGC+AGG | - | chr3.2:25758757-25758776 | MS.gene63561:CDS | 25.0% |
! | ATATTTATTGCTGTCAAAGA+AGG | - | chr3.2:25760444-25760463 | MS.gene63561:CDS | 25.0% |
! | ATTTGCATATAGTATGTGTT+TGG | - | chr3.2:25759459-25759478 | MS.gene63561:intron | 25.0% |
! | GACTTTACAAATAATGTGTT+TGG | - | chr3.2:25759423-25759442 | MS.gene63561:intron | 25.0% |
! | TATCATTTATCATGATAAGC+GGG | - | chr3.2:25758944-25758963 | MS.gene63561:CDS | 25.0% |
! | TTTCTATTTGCATGGTTATT+GGG | - | chr3.2:25760501-25760520 | MS.gene63561:CDS | 25.0% |
!! | TTTTTGTTAGACAACTCAAT+TGG | + | chr3.2:25759601-25759620 | None:intergenic | 25.0% |
AATCAAGTGCTTAAACTCTA+TGG | - | chr3.2:25760697-25760716 | MS.gene63561:CDS | 30.0% | |
ATAAAAGAGCAGAGTAAAGA+TGG | + | chr3.2:25759781-25759800 | None:intergenic | 30.0% | |
ATCAAGTGCTTAAACTCTAT+GGG | - | chr3.2:25760698-25760717 | MS.gene63561:CDS | 30.0% | |
CAAATAAGTTTCTTCACTTC+AGG | + | chr3.2:25759903-25759922 | None:intergenic | 30.0% | |
CATTGAAATTGTGTACAACA+TGG | - | chr3.2:25760033-25760052 | MS.gene63561:intron | 30.0% | |
CTTTCTATTTGCATGGTTAT+TGG | - | chr3.2:25760500-25760519 | MS.gene63561:CDS | 30.0% | |
GAGAATTCTTTCTATTTGCA+TGG | - | chr3.2:25760493-25760512 | MS.gene63561:CDS | 30.0% | |
GGCAAATGTTAGTAAATTAG+TGG | - | chr3.2:25759523-25759542 | MS.gene63561:intron | 30.0% | |
TGTTAAGTCCTAAAATCAAG+CGG | - | chr3.2:25760737-25760756 | MS.gene63561:CDS | 30.0% | |
TTGAATGAAACTTATGCTCT+TGG | - | chr3.2:25758570-25758589 | MS.gene63561:CDS | 30.0% | |
TTTCCATCTTATGCTTTCAT+CGG | - | chr3.2:25759844-25759863 | MS.gene63561:intron | 30.0% | |
! | CCTATAAAAACGAGCTTTAA+AGG | + | chr3.2:25759206-25759225 | None:intergenic | 30.0% |
! | CTTTCATCGGTTATTCAAAA+CGG | - | chr3.2:25759857-25759876 | MS.gene63561:intron | 30.0% |
!!! | ATTAGTTTTGTGAGACTGTT+CGG | + | chr3.2:25759139-25759158 | None:intergenic | 30.0% |
!!! | CCTTTAAAGCTCGTTTTTAT+AGG | - | chr3.2:25759203-25759222 | MS.gene63561:intron | 30.0% |
AAACCGTGTGATAATCCTAT+TGG | - | chr3.2:25758708-25758727 | MS.gene63561:CDS | 35.0% | |
ATAAAGATCACAATCCTCTG+CGG | - | chr3.2:25758381-25758400 | MS.gene63561:CDS | 35.0% | |
ATAGGATTATCACACGGTTT+CGG | + | chr3.2:25758708-25758727 | None:intergenic | 35.0% | |
GTATCCCAATTAAGGATCTT+AGG | + | chr3.2:25758597-25758616 | None:intergenic | 35.0% | |
TAGACCAGTTTGATATACGA+AGG | - | chr3.2:25760794-25760813 | MS.gene63561:CDS | 35.0% | |
TCAAATAAGCCAATCTGAAC+AGG | - | chr3.2:25759173-25759192 | MS.gene63561:intron | 35.0% | |
TCACCAATAGGATTATCACA+CGG | + | chr3.2:25758714-25758733 | None:intergenic | 35.0% | |
TGCTTAAACTCTATGGGTTT+AGG | - | chr3.2:25760704-25760723 | MS.gene63561:CDS | 35.0% | |
TGGTCCTAAGATCCTTAATT+GGG | - | chr3.2:25758590-25758609 | MS.gene63561:CDS | 35.0% | |
TTCTCTCAGTATCCCAATTA+AGG | + | chr3.2:25758605-25758624 | None:intergenic | 35.0% | |
TTGGTCCTAAGATCCTTAAT+TGG | - | chr3.2:25758589-25758608 | MS.gene63561:CDS | 35.0% | |
! | AACTGGTCTACAAACTCTAA+AGG | + | chr3.2:25760784-25760803 | None:intergenic | 35.0% |
! | ATTGGTGATCTAAGAGTTGA+AGG | + | chr3.2:25759583-25759602 | None:intergenic | 35.0% |
! | TAACCGATGAAAGCATAAGA+TGG | + | chr3.2:25759850-25759869 | None:intergenic | 35.0% |
!! | ATGATGGAAAAGTATCATCC+GGG | - | chr3.2:25760550-25760569 | MS.gene63561:CDS | 35.0% |
!! | ATTTTGACGGCAAATCTCAA+AGG | - | chr3.2:25760382-25760401 | MS.gene63561:CDS | 35.0% |
!! | GATGATGGAAAAGTATCATC+CGG | - | chr3.2:25760549-25760568 | MS.gene63561:CDS | 35.0% |
!!! | TGTGCTGGTTGTTCTTTTTT+GGG | + | chr3.2:25758277-25758296 | None:intergenic | 35.0% |
!!! | TTTTAGGACTTAACAATCCC+CGG | + | chr3.2:25760732-25760751 | None:intergenic | 35.0% |
AACATGAGCCTTCGAATCAT+GGG | + | chr3.2:25760100-25760119 | None:intergenic | 40.0% | |
AGACTGTTCGGTAGAACTTT+CGG | + | chr3.2:25759127-25759146 | None:intergenic | 40.0% | |
AGCAGAGTAAAGATGGAGTT+TGG | + | chr3.2:25759774-25759793 | None:intergenic | 40.0% | |
ATATGATACTGCAGGTTGCA+TGG | - | chr3.2:25760010-25760029 | MS.gene63561:intron | 40.0% | |
ATTTGCATGGTTATTGGGCT+GGG | - | chr3.2:25760506-25760525 | MS.gene63561:CDS | 40.0% | |
CAAAAAAGAACAACCAGCAC+AGG | - | chr3.2:25758276-25758295 | MS.gene63561:CDS | 40.0% | |
CAGTCTCACAAAACTAATGC+TGG | - | chr3.2:25759141-25759160 | MS.gene63561:intron | 40.0% | |
CCAGTAAGAAGCAAAATCCT+TGG | + | chr3.2:25758678-25758697 | None:intergenic | 40.0% | |
CCCACAAAATGTGTCACAAA+CGG | + | chr3.2:25760595-25760614 | None:intergenic | 40.0% | |
GATCTGTCATATGATACTGC+AGG | - | chr3.2:25760002-25760021 | MS.gene63561:intron | 40.0% | |
GCAGAGTAAAGATGGAGTTT+GGG | + | chr3.2:25759773-25759792 | None:intergenic | 40.0% | |
GCATAAGATGGAAAAGCAGT+AGG | + | chr3.2:25759838-25759857 | None:intergenic | 40.0% | |
GGCTTCCCCTTAACAAAATT+AGG | + | chr3.2:25758657-25758676 | None:intergenic | 40.0% | |
GTATGTGTTTGGTTGTTGTG+TGG | - | chr3.2:25759470-25759489 | MS.gene63561:intron | 40.0% | |
GTCAAAGAAGGACAAATGGA+TGG | - | chr3.2:25760456-25760475 | MS.gene63561:CDS | 40.0% | |
GTTGCCTTCGTATATCAAAC+TGG | + | chr3.2:25760801-25760820 | None:intergenic | 40.0% | |
TAACATGAGCCTTCGAATCA+TGG | + | chr3.2:25760101-25760120 | None:intergenic | 40.0% | |
TAATCTCCATAACTCCCACA+AGG | + | chr3.2:25760625-25760644 | None:intergenic | 40.0% | |
TATTTGCATGGTTATTGGGC+TGG | - | chr3.2:25760505-25760524 | MS.gene63561:CDS | 40.0% | |
TGATCGGTATGAAGAGATGA+TGG | - | chr3.2:25760534-25760553 | MS.gene63561:CDS | 40.0% | |
TGATGCATTCTTCACTGACA+TGG | - | chr3.2:25760159-25760178 | MS.gene63561:intron | 40.0% | |
TGCTGTCAAAGAAGGACAAA+TGG | - | chr3.2:25760452-25760471 | MS.gene63561:CDS | 40.0% | |
TGTTGTTCGAGCAGAATTCT+TGG | - | chr3.2:25760245-25760264 | MS.gene63561:intron | 40.0% | |
TTCTGCTCGAACAACAAATC+AGG | + | chr3.2:25760241-25760260 | None:intergenic | 40.0% | |
! | ATTTTGTTAAGGGGAAGCCA+AGG | - | chr3.2:25758658-25758677 | MS.gene63561:CDS | 40.0% |
! | CCAAGGATTTTGCTTCTTAC+TGG | - | chr3.2:25758675-25758694 | MS.gene63561:CDS | 40.0% |
! | CCGTTTGTGACACATTTTGT+GGG | - | chr3.2:25760592-25760611 | MS.gene63561:CDS | 40.0% |
! | CGTTTGTGACACATTTTGTG+GGG | - | chr3.2:25760593-25760612 | MS.gene63561:CDS | 40.0% |
! | GTTGGATTTGCTTGATGCTT+GGG | - | chr3.2:25760315-25760334 | MS.gene63561:intron | 40.0% |
! | GTTTGAGGCTGATGATCAAT+CGG | - | chr3.2:25760414-25760433 | MS.gene63561:CDS | 40.0% |
! | TTCCTGATCCGCTTGATTTT+AGG | + | chr3.2:25760748-25760767 | None:intergenic | 40.0% |
!! | AAAAGTATCATCCGGGGTTA+GGG | - | chr3.2:25760557-25760576 | MS.gene63561:CDS | 40.0% |
!! | TGATGGAAAAGTATCATCCG+GGG | - | chr3.2:25760551-25760570 | MS.gene63561:CDS | 40.0% |
!! | TTTTGTTTCGCAATTGCCAG+TGG | - | chr3.2:25760290-25760309 | MS.gene63561:intron | 40.0% |
!!! | CTGTGCTGGTTGTTCTTTTT+TGG | + | chr3.2:25758278-25758297 | None:intergenic | 40.0% |
AAAAGAACAACCAGCACAGG+AGG | - | chr3.2:25758279-25758298 | MS.gene63561:CDS | 45.0% | |
AACTCTATGGGTTTAGGCAC+CGG | - | chr3.2:25760710-25760729 | MS.gene63561:CDS | 45.0% | |
ACCAAATCCACTCCACTTCA+GGG | + | chr3.2:25760129-25760148 | None:intergenic | 45.0% | |
AGAGAGATGCCTTAGTAGCA+TGG | - | chr3.2:25760651-25760670 | MS.gene63561:CDS | 45.0% | |
ATGCCTTAGTAGCATGGAGA+GGG | - | chr3.2:25760657-25760676 | MS.gene63561:CDS | 45.0% | |
ATGGAGTTTGGGTGAGCAAT+TGG | + | chr3.2:25759762-25759781 | None:intergenic | 45.0% | |
CAGATGGATCGGAATCAGAT+CGG | + | chr3.2:25758521-25758540 | None:intergenic | 45.0% | |
CATGTTATCACACCCTGAAG+TGG | - | chr3.2:25760114-25760133 | MS.gene63561:intron | 45.0% | |
CCAAATTGCCCATGATTCGA+AGG | - | chr3.2:25760089-25760108 | MS.gene63561:intron | 45.0% | |
CCTTCGAATCATGGGCAATT+TGG | + | chr3.2:25760092-25760111 | None:intergenic | 45.0% | |
CTGATTCCGATCAGATGGAT+CGG | + | chr3.2:25758532-25758551 | None:intergenic | 45.0% | |
CTGATTCCGATCCATCTGAT+CGG | - | chr3.2:25758523-25758542 | MS.gene63561:CDS | 45.0% | |
CTTGGATCGCAATCAACACA+GGG | - | chr3.2:25760263-25760282 | MS.gene63561:intron | 45.0% | |
GAAGGACAAATGGATGGAGA+AGG | - | chr3.2:25760462-25760481 | MS.gene63561:CDS | 45.0% | |
GATATACGAAGGCAACATGC+AGG | - | chr3.2:25760805-25760824 | MS.gene63561:CDS | 45.0% | |
GGGATACTGAGAGAACAAGT+TGG | - | chr3.2:25758610-25758629 | MS.gene63561:CDS | 45.0% | |
GTCCTAAAATCAAGCGGATC+AGG | - | chr3.2:25760743-25760762 | MS.gene63561:CDS | 45.0% | |
TCTTGGATCGCAATCAACAC+AGG | - | chr3.2:25760262-25760281 | MS.gene63561:intron | 45.0% | |
TGACGGCAAATCTCAAAGGA+AGG | - | chr3.2:25760386-25760405 | MS.gene63561:CDS | 45.0% | |
TGTGTACAACATGGCTCACT+TGG | - | chr3.2:25760042-25760061 | MS.gene63561:intron | 45.0% | |
! | AAAGTATCATCCGGGGTTAG+GGG | - | chr3.2:25760558-25760577 | MS.gene63561:CDS | 45.0% |
! | CGTTGGATTTGCTTGATGCT+TGG | - | chr3.2:25760314-25760333 | MS.gene63561:intron | 45.0% |
! | CTACTAAGGCATCTCTCTAC+TGG | + | chr3.2:25760649-25760668 | None:intergenic | 45.0% |
! | GCCGTTTGTGACACATTTTG+TGG | - | chr3.2:25760591-25760610 | MS.gene63561:CDS | 45.0% |
! | GGAGAGGGCTTTCAATTTTG+CGG | - | chr3.2:25760672-25760691 | MS.gene63561:CDS | 45.0% |
! | GGAGGCTGGAAAGATTTTGA+CGG | - | chr3.2:25760369-25760388 | MS.gene63561:CDS | 45.0% |
! | GTTAGTTTCCTCGATGACAG+CGG | + | chr3.2:25758481-25758500 | None:intergenic | 45.0% |
! | TGTAAGCCTTGTGGGAGTTA+TGG | - | chr3.2:25760616-25760635 | MS.gene63561:CDS | 45.0% |
!! | GAAAAGTATCATCCGGGGTT+AGG | - | chr3.2:25760556-25760575 | MS.gene63561:CDS | 45.0% |
!! | GAGGTTGGTGTTGTTGTTGT+TGG | + | chr3.2:25758309-25758328 | None:intergenic | 45.0% |
!! | TAAATATAAAGATTATAATA+TGG | - | chr3.2:25760201-25760220 | MS.gene63561:intron | 5.0% |
AAGCCCTCTCCATGCTACTA+AGG | + | chr3.2:25760663-25760682 | None:intergenic | 50.0% | |
AATCAGATCGGATCTCAGCG+AGG | + | chr3.2:25758509-25758528 | None:intergenic | 50.0% | |
ACATGGAGCTTGCAGGTTAC+TGG | - | chr3.2:25760065-25760084 | MS.gene63561:intron | 50.0% | |
ACTCTATGGGTTTAGGCACC+GGG | - | chr3.2:25760711-25760730 | MS.gene63561:CDS | 50.0% | |
AGTGTACGGTTACGTGAGGT+TGG | + | chr3.2:25758324-25758343 | None:intergenic | 50.0% | |
ATCGGATCTCAGCGAGGATA+CGG | + | chr3.2:25758503-25758522 | None:intergenic | 50.0% | |
CAACATGGCTCACTTGGACA+TGG | - | chr3.2:25760048-25760067 | MS.gene63561:intron | 50.0% | |
CAAGCAAATCCAACGACCAC+TGG | + | chr3.2:25760309-25760328 | None:intergenic | 50.0% | |
CACCAAATCCACTCCACTTC+AGG | + | chr3.2:25760130-25760149 | None:intergenic | 50.0% | |
CATGGAGCTTGCAGGTTACT+GGG | - | chr3.2:25760066-25760085 | MS.gene63561:intron | 50.0% | |
GATGCCTTAGTAGCATGGAG+AGG | - | chr3.2:25760656-25760675 | MS.gene63561:CDS | 50.0% | |
GGATTATCACACGGTTTCGG+AGG | + | chr3.2:25758705-25758724 | None:intergenic | 50.0% | |
GGATTGTTACGAAACCGCAG+AGG | + | chr3.2:25758398-25758417 | None:intergenic | 50.0% | |
GTAACAATCCTCGTCCTACG+TGG | - | chr3.2:25758408-25758427 | MS.gene63561:CDS | 50.0% | |
TATCACACCCTGAAGTGGAG+TGG | - | chr3.2:25760119-25760138 | MS.gene63561:intron | 50.0% | |
TCCTCTCGAATTGGGCCTTT+CGG | + | chr3.2:25760352-25760371 | None:intergenic | 50.0% | |
TCGGTCTGATTCCGATCAGA+TGG | + | chr3.2:25758537-25758556 | None:intergenic | 50.0% | |
TGATCATCAGCCTCAAACGC+TGG | + | chr3.2:25760412-25760431 | None:intergenic | 50.0% | |
TTCCAGCCTCCTCTCGAATT+GGG | + | chr3.2:25760360-25760379 | None:intergenic | 50.0% | |
TTTCCAGCCTCCTCTCGAAT+TGG | + | chr3.2:25760361-25760380 | None:intergenic | 50.0% | |
TTTGTGGGGTGTAAGCCTTG+TGG | - | chr3.2:25760607-25760626 | MS.gene63561:CDS | 50.0% | |
! | ACCCTGAAGTGGAGTGGATT+TGG | - | chr3.2:25760125-25760144 | MS.gene63561:intron | 50.0% |
! | CTGAAGTGGAGTGGATTTGG+TGG | - | chr3.2:25760128-25760147 | MS.gene63561:intron | 50.0% |
! | GGCAAAGTGCCTGTTCAGAT+TGG | + | chr3.2:25759185-25759204 | None:intergenic | 50.0% |
! | TTGTGGGGTGTAAGCCTTGT+GGG | - | chr3.2:25760608-25760627 | MS.gene63561:CDS | 50.0% |
! | TTTTGGATCTGACGTCCACG+TGG | + | chr3.2:25758348-25758367 | None:intergenic | 50.0% |
!! | AGTGGAGTGGATTTGGTGGA+TGG | - | chr3.2:25760132-25760151 | MS.gene63561:intron | 50.0% |
!! | ATTGGGCTGGGTTGGTTGAT+CGG | - | chr3.2:25760518-25760537 | MS.gene63561:CDS | 50.0% |
!! | TGTTGGTAATCCTCCTGTGC+TGG | + | chr3.2:25758292-25758311 | None:intergenic | 50.0% |
AATTGGGCCTTTCGGACCCA+TGG | + | chr3.2:25760344-25760363 | None:intergenic | 55.0% | |
ATTGGGCCTTTCGGACCCAT+GGG | + | chr3.2:25760343-25760362 | None:intergenic | 55.0% | |
CAAAGGAAGGCCAGCGTTTG+AGG | - | chr3.2:25760399-25760418 | MS.gene63561:CDS | 55.0% | |
CACTTGGACATGGAGCTTGC+AGG | - | chr3.2:25760058-25760077 | MS.gene63561:intron | 55.0% | |
CTCGTCCTACGTGGCACAAT+CGG | - | chr3.2:25758417-25758436 | MS.gene63561:CDS | 55.0% | |
CTTGATGCTTGGGCTCCCAT+GGG | - | chr3.2:25760325-25760344 | MS.gene63561:CDS | 55.0% | |
GAAAGGCCCAATTCGAGAGG+AGG | - | chr3.2:25760351-25760370 | MS.gene63561:CDS | 55.0% | |
GGCACAATCGGCGTTAACCT+CGG | - | chr3.2:25758429-25758448 | MS.gene63561:CDS | 55.0% | |
TCCGAAAGGCCCAATTCGAG+AGG | - | chr3.2:25760348-25760367 | MS.gene63561:CDS | 55.0% | |
TCGCAATTGCCAGTGGTCGT+TGG | - | chr3.2:25760297-25760316 | MS.gene63561:intron | 55.0% | |
TGGCAGTGTACGGTTACGTG+AGG | + | chr3.2:25758328-25758347 | None:intergenic | 55.0% | |
! | AAGGCAACATGCAGGCACTG+TGG | - | chr3.2:25760813-25760832 | MS.gene63561:CDS | 55.0% |
! | CTCTATGGGTTTAGGCACCG+GGG | - | chr3.2:25760712-25760731 | MS.gene63561:CDS | 55.0% |
! | GCATGGTTATTGGGCTGGGT+TGG | - | chr3.2:25760510-25760529 | MS.gene63561:CDS | 55.0% |
! | TAACGCCGATTGTGCCACGT+AGG | + | chr3.2:25758425-25758444 | None:intergenic | 55.0% |
ATCCGGGGTTAGGGGATGAG+AGG | - | chr3.2:25760566-25760585 | MS.gene63561:CDS | 60.0% | |
CACCTCTCATCCCCTAACCC+CGG | + | chr3.2:25760571-25760590 | None:intergenic | 60.0% | |
CGATTGTGCCACGTAGGACG+AGG | + | chr3.2:25758419-25758438 | None:intergenic | 60.0% | |
CGGCACATCACAGAACGACG+CGG | - | chr3.2:25758449-25758468 | MS.gene63561:CDS | 60.0% | |
CGTAACCGTACACTGCCACG+TGG | - | chr3.2:25758330-25758349 | MS.gene63561:CDS | 60.0% | |
CGTCGTTCTGTGATGTGCCG+AGG | + | chr3.2:25758449-25758468 | None:intergenic | 60.0% | |
GACGTCCACGTGGCAGTGTA+CGG | + | chr3.2:25758338-25758357 | None:intergenic | 60.0% | |
GCTTGATGCTTGGGCTCCCA+TGG | - | chr3.2:25760324-25760343 | MS.gene63561:CDS | 60.0% | |
GGTTAACGCCGCTGTCATCG+AGG | - | chr3.2:25758470-25758489 | MS.gene63561:CDS | 60.0% | |
CGGGGTTAGGGGATGAGAGG+TGG | - | chr3.2:25760569-25760588 | MS.gene63561:CDS | 65.0% | |
GGCCCAATTCGAGAGGAGGC+TGG | - | chr3.2:25760355-25760374 | MS.gene63561:CDS | 65.0% | |
TGGGCTCCCATGGGTCCGAA+AGG | - | chr3.2:25760334-25760353 | MS.gene63561:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 25758252 | 25760849 | 25758252 | ID=MS.gene63561 |
chr3.2 | mRNA | 25758252 | 25760849 | 25758252 | ID=MS.gene63561.t1;Parent=MS.gene63561 |
chr3.2 | exon | 25760323 | 25760849 | 25760323 | ID=MS.gene63561.t1.exon1;Parent=MS.gene63561.t1 |
chr3.2 | CDS | 25760323 | 25760849 | 25760323 | ID=cds.MS.gene63561.t1;Parent=MS.gene63561.t1 |
chr3.2 | exon | 25758252 | 25759077 | 25758252 | ID=MS.gene63561.t1.exon2;Parent=MS.gene63561.t1 |
chr3.2 | CDS | 25758252 | 25759077 | 25758252 | ID=cds.MS.gene63561.t1;Parent=MS.gene63561.t1 |
Gene Sequence |
Protein sequence |