Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63629.t1 | RHN66402.1 | 92.2 | 269 | 20 | 1 | 1 | 268 | 68 | 336 | 3.60E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63629.t1 | P09444 | 49.3 | 270 | 123 | 4 | 1 | 266 | 1 | 260 | 2.4e-54 | 213.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63629.t1 | G7IZL9 | 92.2 | 269 | 20 | 1 | 1 | 268 | 1 | 269 | 2.6e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050945 | MS.gene63629 | 0.802729 | 4.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63629.t1 | MTR_3g034660 | 92.193 | 269 | 20 | 1 | 1 | 268 | 1 | 269 | 8.10e-168 | 465 |
| MS.gene63629.t1 | MTR_1g072090 | 49.446 | 271 | 124 | 5 | 1 | 268 | 1 | 261 | 4.47e-69 | 214 |
| MS.gene63629.t1 | MTR_1g103620 | 47.566 | 267 | 126 | 5 | 1 | 266 | 1 | 254 | 1.06e-66 | 208 |
| MS.gene63629.t1 | MTR_1g072090 | 50.000 | 214 | 99 | 4 | 1 | 211 | 1 | 209 | 2.87e-57 | 182 |
| MS.gene63629.t1 | MTR_1g081760 | 41.455 | 275 | 116 | 5 | 1 | 267 | 1 | 238 | 1.42e-41 | 143 |
| MS.gene63629.t1 | MTR_2g076230 | 39.416 | 137 | 76 | 3 | 1 | 137 | 43 | 172 | 4.22e-23 | 94.4 |
| MS.gene63629.t1 | MTR_2g076230 | 39.416 | 137 | 76 | 3 | 1 | 137 | 43 | 172 | 7.04e-23 | 94.7 |
| MS.gene63629.t1 | MTR_2g076220 | 40.336 | 119 | 65 | 2 | 1 | 119 | 1 | 113 | 4.33e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63629.t1 | AT3G22500 | 45.489 | 266 | 131 | 5 | 1 | 266 | 1 | 252 | 1.76e-56 | 182 |
| MS.gene63629.t1 | AT3G22490 | 43.173 | 271 | 127 | 5 | 5 | 266 | 6 | 258 | 7.65e-56 | 180 |
| MS.gene63629.t1 | AT1G03120 | 50.382 | 131 | 60 | 1 | 137 | 267 | 56 | 181 | 1.14e-29 | 110 |
| MS.gene63629.t1 | AT5G27980 | 53.465 | 101 | 47 | 0 | 139 | 239 | 68 | 168 | 5.44e-25 | 98.6 |
| MS.gene63629.t1 | AT5G53260 | 41.406 | 128 | 70 | 1 | 140 | 267 | 50 | 172 | 1.25e-17 | 78.6 |
| MS.gene63629.t1 | AT5G53270 | 42.063 | 126 | 68 | 1 | 140 | 265 | 31 | 151 | 1.80e-16 | 75.1 |
| MS.gene63629.t1 | AT1G03120 | 53.333 | 75 | 35 | 0 | 137 | 211 | 56 | 130 | 1.34e-14 | 69.3 |
Find 87 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTTGTGCCTATGAATA+TGG | 0.166083 | 3.2:-23654970 | MS.gene63629:CDS |
| CCATGGTTCTTCATGTTTCC+TGG | 0.238117 | 3.2:+23653286 | None:intergenic |
| GTGTGAGGCCTGGCGGTGTC+GGG | 0.275992 | 3.2:-23654806 | MS.gene63629:CDS |
| TGTGTGAGGCCTGGCGGTGT+CGG | 0.283706 | 3.2:-23654807 | MS.gene63629:CDS |
| ATGGCTGCAGCAGGACTTCC+TGG | 0.305505 | 3.2:+23655170 | None:intergenic |
| CTCTCAACAGCCACGCTAAT+CGG | 0.330105 | 3.2:-23654761 | MS.gene63629:CDS |
| CCATCAGTGCTGCTGAGATT+AGG | 0.336376 | 3.2:-23654845 | MS.gene63629:CDS |
| GCCATGTTAGCGGCCACTTG+TGG | 0.347945 | 3.2:+23655227 | None:intergenic |
| CATCAGTGCTGCTGAGATTA+GGG | 0.357619 | 3.2:-23654844 | MS.gene63629:CDS |
| CCATGTTAGCGGCCACTTGT+GGG | 0.359786 | 3.2:+23655228 | None:intergenic |
| AAAACTTTCTGATGTGTTAA+CGG | 0.360481 | 3.2:-23654724 | MS.gene63629:intron |
| GCCGCTTGCATGGCTGCAGC+AGG | 0.364075 | 3.2:+23655161 | None:intergenic |
| CACTTTGTGCCTATGAATAT+GGG | 0.375801 | 3.2:-23654969 | MS.gene63629:CDS |
| GCCTGGCGGTGTCGGGGCGA+CGG | 0.386365 | 3.2:-23654799 | MS.gene63629:CDS |
| GCCGTCGCCCCGACACCGCC+AGG | 0.387638 | 3.2:+23654798 | None:intergenic |
| GAAAACATCACCGTATTTGA+TGG | 0.395353 | 3.2:+23655286 | None:intergenic |
| CGGATAAGCTGGTGGAGGAC+AGG | 0.403743 | 3.2:-23653440 | MS.gene63629:CDS |
| TTTAATCTCTTCTTGAAGCC+TGG | 0.405950 | 3.2:+23655316 | None:intergenic |
| GCGGTTGATGGTCAGATTAT+AGG | 0.409172 | 3.2:-23655014 | MS.gene63629:CDS |
| CTTCTTGAAGCCTGGTTGGT+TGG | 0.415684 | 3.2:+23655324 | None:intergenic |
| GTTGTGACGGAGGCGGTTGA+TGG | 0.427340 | 3.2:-23655026 | MS.gene63629:CDS |
| GAAGCCTGGTTGGTTGGCCA+TGG | 0.430327 | 3.2:+23655330 | None:intergenic |
| GCCTATGAATATGGGCTTTG+CGG | 0.430604 | 3.2:-23654961 | MS.gene63629:CDS |
| GTTAGAAGTGGCGGGGATAT+CGG | 0.431798 | 3.2:-23654904 | MS.gene63629:CDS |
| ATCTCTTCTTGAAGCCTGGT+TGG | 0.447618 | 3.2:+23655320 | None:intergenic |
| ATAGGCACAAAGTGCGCGTC+AGG | 0.451108 | 3.2:+23654978 | None:intergenic |
| GATATCGGTTGGTGATAAAC+CGG | 0.458559 | 3.2:-23654889 | MS.gene63629:CDS |
| GATCATTGCGGCCGCTTGCA+TGG | 0.469213 | 3.2:+23655151 | None:intergenic |
| TCGTCATGGTATAGCAGAAA+TGG | 0.469856 | 3.2:-23655099 | MS.gene63629:CDS |
| GGAGAGAGGTGTGTGAGGCC+TGG | 0.480169 | 3.2:-23654816 | MS.gene63629:CDS |
| CCCACAAGTGGCCGCTAACA+TGG | 0.487849 | 3.2:-23655228 | MS.gene63629:CDS |
| CCTAATCTCAGCAGCACTGA+TGG | 0.492034 | 3.2:+23654845 | None:intergenic |
| ATAGGATGCGGCGGATAAGC+TGG | 0.493945 | 3.2:-23653451 | MS.gene63629:intron |
| TTCTGCTGCAGCCATGTTAG+CGG | 0.499845 | 3.2:+23655217 | None:intergenic |
| TCCTGCTGCAGCCATGCAAG+CGG | 0.501385 | 3.2:-23655162 | MS.gene63629:CDS |
| GCCGCAAAGCCCATATTCAT+AGG | 0.505709 | 3.2:+23654960 | None:intergenic |
| GAGCTTAGCTGTTGTGGCCA+TGG | 0.506595 | 3.2:+23653311 | None:intergenic |
| CAATGGCTCGTTGGTCGTCA+TGG | 0.509926 | 3.2:-23655113 | MS.gene63629:CDS |
| AAACAAGAACCCATCAAATA+CGG | 0.510137 | 3.2:-23655296 | MS.gene63629:CDS |
| GGATAAGCTGGTGGAGGACA+GGG | 0.510419 | 3.2:-23653439 | MS.gene63629:CDS |
| CTGGTTGAGCTTAGCTGTTG+TGG | 0.511900 | 3.2:+23653305 | None:intergenic |
| TGTGAGGCCTGGCGGTGTCG+GGG | 0.521665 | 3.2:-23654805 | MS.gene63629:CDS |
| AAAACATCACCGTATTTGAT+GGG | 0.527182 | 3.2:+23655287 | None:intergenic |
| TGGTGGAATAGCTGCATCCA+TGG | 0.532996 | 3.2:-23653328 | MS.gene63629:CDS |
| GGAGAGGCGTTAGAAGTGGC+GGG | 0.533131 | 3.2:-23654912 | MS.gene63629:CDS |
| AGGCCTCACACACCTCTCTC+CGG | 0.534996 | 3.2:+23654818 | None:intergenic |
| TGCCGACCGTCGTGTTGTGA+CGG | 0.537709 | 3.2:-23655039 | MS.gene63629:CDS |
| TCAGCATCGTTCTGATCCAC+CGG | 0.561215 | 3.2:+23654870 | None:intergenic |
| GCTGCTGAGATTAGGGCTAC+CGG | 0.568023 | 3.2:-23654837 | MS.gene63629:CDS |
| CATGTTAGCGGCCACTTGTG+GGG | 0.571385 | 3.2:+23655229 | None:intergenic |
| CTCCGTCACAACACGACGGT+CGG | 0.572167 | 3.2:+23655037 | None:intergenic |
| CCGTCGTGTTGTGACGGAGG+CGG | 0.578384 | 3.2:-23655033 | MS.gene63629:CDS |
| GCATCTGCACAATGGCTCGT+TGG | 0.578751 | 3.2:-23655122 | MS.gene63629:CDS |
| GATGACGATCCGATCACTAT+CGG | 0.581623 | 3.2:-23654933 | MS.gene63629:CDS |
| AATATTCATCATTTGTTGTG+TGG | 0.590823 | 3.2:+23653359 | None:intergenic |
| CGGAGAGGCGTTAGAAGTGG+CGG | 0.590961 | 3.2:-23654913 | MS.gene63629:CDS |
| AACGCCTCTCCGATAGTGAT+CGG | 0.591968 | 3.2:+23654924 | None:intergenic |
| TGCGGCGGATAAGCTGGTGG+AGG | 0.592783 | 3.2:-23653445 | MS.gene63629:CDS |
| TGAGCCATGGCCAACCAACC+AGG | 0.605511 | 3.2:-23655334 | MS.gene63629:CDS |
| TGAGACAATCTCCCCACAAG+TGG | 0.610093 | 3.2:-23655240 | MS.gene63629:CDS |
| GAAGTGGCGGGGATATCGGT+TGG | 0.611879 | 3.2:-23654900 | MS.gene63629:CDS |
| CACAACAGCTAAGCTCAACC+AGG | 0.614854 | 3.2:-23653304 | MS.gene63629:CDS |
| TATCGGAGAGGCGTTAGAAG+TGG | 0.617007 | 3.2:-23654916 | MS.gene63629:CDS |
| AGATTAGGGCTACCGGAGAG+AGG | 0.625834 | 3.2:-23654830 | MS.gene63629:CDS |
| ATGATGAATATTGCTGAACC+TGG | 0.626149 | 3.2:-23653348 | MS.gene63629:CDS |
| ATGGATGCAGCTATTCCACC+AGG | 0.630413 | 3.2:+23653330 | None:intergenic |
| ATGAATATTGCTGAACCTGG+TGG | 0.635922 | 3.2:-23653345 | MS.gene63629:CDS |
| TAAGCTGGTGGAGGACAGGG+CGG | 0.636080 | 3.2:-23653436 | MS.gene63629:CDS |
| ATCGGTTGGTGATAAACCGG+TGG | 0.639207 | 3.2:-23654886 | MS.gene63629:CDS |
| AAACACAACACAATGAGCCA+TGG | 0.639243 | 3.2:-23655347 | None:intergenic |
| CTACCGGAGAGAGGTGTGTG+AGG | 0.640214 | 3.2:-23654821 | MS.gene63629:CDS |
| TGTATATATATAGGATGCGG+CGG | 0.642444 | 3.2:-23653460 | MS.gene63629:intron |
| ATTAGCGTGGCTGTTGAGAG+CGG | 0.645143 | 3.2:+23654764 | None:intergenic |
| CGACCGTCGTGTTGTGACGG+AGG | 0.646821 | 3.2:-23655036 | MS.gene63629:CDS |
| TCAGATTATAGGACGGCGCG+TGG | 0.654489 | 3.2:-23655003 | MS.gene63629:CDS |
| TCAACGAGGCATCTGCACAA+TGG | 0.666804 | 3.2:-23655130 | MS.gene63629:CDS |
| TCTCTTCAATCCGATTAGCG+TGG | 0.674286 | 3.2:+23654751 | None:intergenic |
| AGAAGCTGTGTATGATGCAG+AGG | 0.680635 | 3.2:-23653397 | MS.gene63629:CDS |
| GAGAGGCGTTAGAAGTGGCG+GGG | 0.680725 | 3.2:-23654911 | MS.gene63629:CDS |
| AGATGCCTCGTTGATCATTG+CGG | 0.682722 | 3.2:+23655139 | None:intergenic |
| TTGATGGTCAGATTATAGGA+CGG | 0.688715 | 3.2:-23655010 | MS.gene63629:CDS |
| GAGAGGTGTGTGAGGCCTGG+CGG | 0.694862 | 3.2:-23654813 | MS.gene63629:CDS |
| GGATGCGGCGGATAAGCTGG+TGG | 0.713312 | 3.2:-23653448 | MS.gene63629:CDS |
| CGATCCGATCACTATCGGAG+AGG | 0.731692 | 3.2:-23654928 | MS.gene63629:CDS |
| AGCGGCCGCAATGATCAACG+AGG | 0.739216 | 3.2:-23655144 | MS.gene63629:CDS |
| CCGCCTCCGTCACAACACGA+CGG | 0.744880 | 3.2:+23655033 | None:intergenic |
| TGTTCGTGTGACAGAAACAA+CGG | 0.764152 | 3.2:-23655063 | MS.gene63629:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGTGAAATTGTAATA+TGG | - | chr3.2:23654859-23654878 | MS.gene63629:CDS | 15.0% |
| !! | ATACAAGATTATAATTGATT+AGG | - | chr3.2:23653985-23654004 | MS.gene63629:intron | 15.0% |
| !! | TAACTAAAATATATGTTGAA+GGG | - | chr3.2:23654884-23654903 | MS.gene63629:CDS | 15.0% |
| !! | TTAACTAAAATATATGTTGA+AGG | - | chr3.2:23654883-23654902 | MS.gene63629:CDS | 15.0% |
| !! | TTTAACTAACTAATCAAAAA+AGG | + | chr3.2:23654012-23654031 | None:intergenic | 15.0% |
| !!! | CATGTTATTATTATGTTTTT+TGG | - | chr3.2:23654218-23654237 | MS.gene63629:intron | 15.0% |
| !! | TGTAGAATTGAAATTTCATT+TGG | - | chr3.2:23654997-23655016 | MS.gene63629:CDS | 20.0% |
| !!! | AAATATTACAAAGTACTCAT+TGG | + | chr3.2:23655141-23655160 | None:intergenic | 20.0% |
| !!! | GAGTACTTTGTAATATTTTT+TGG | - | chr3.2:23655143-23655162 | MS.gene63629:CDS | 20.0% |
| !!! | TACTTTGTAATATTTTTTGG+TGG | - | chr3.2:23655146-23655165 | MS.gene63629:CDS | 20.0% |
| !!! | TGATTAGTTAGTTAAATACT+TGG | - | chr3.2:23654016-23654035 | MS.gene63629:intron | 20.0% |
| !!! | TTTATTTTTTAGTGTGTGTT+TGG | - | chr3.2:23654372-23654391 | MS.gene63629:intron | 20.0% |
| ! | AAAACTTTCTGATGTGTTAA+CGG | - | chr3.2:23653907-23653926 | MS.gene63629:intron | 25.0% |
| ! | CCATATATAAAGCTACAAAT+TGG | - | chr3.2:23654283-23654302 | MS.gene63629:intron | 25.0% |
| ! | TGTTTGGTATTATGGATTTA+CGG | - | chr3.2:23654388-23654407 | MS.gene63629:intron | 25.0% |
| ! | TTAGTTAGTTAAATACTTGG+AGG | - | chr3.2:23654019-23654038 | MS.gene63629:intron | 25.0% |
| ! | TTGATGAGCAAAATTGATAT+AGG | - | chr3.2:23654827-23654846 | MS.gene63629:CDS | 25.0% |
| !!! | AATATTCATCATTTGTTGTG+TGG | + | chr3.2:23655275-23655294 | None:intergenic | 25.0% |
| !!! | CCAATTTGTAGCTTTATATA+TGG | + | chr3.2:23654286-23654305 | None:intergenic | 25.0% |
| AAAACATCACCGTATTTGAT+GGG | + | chr3.2:23653347-23653366 | None:intergenic | 30.0% | |
| AAACAAGAACCCATCAAATA+CGG | - | chr3.2:23653335-23653354 | MS.gene63629:CDS | 30.0% | |
| AAGCACTTATAGTGAATGTA+AGG | - | chr3.2:23654052-23654071 | MS.gene63629:intron | 30.0% | |
| ATGAGCAAAATTGATATAGG+TGG | - | chr3.2:23654830-23654849 | MS.gene63629:CDS | 30.0% | |
| GAAACCATATATAAGCAACT+CGG | - | chr3.2:23654596-23654615 | MS.gene63629:intron | 30.0% | |
| GATATATAATAACGTGCGTT+TGG | + | chr3.2:23654318-23654337 | None:intergenic | 30.0% | |
| GTAGTGTTTGTTTGGTATTA+CGG | - | chr3.2:23654656-23654675 | MS.gene63629:intron | 30.0% | |
| GTATCAATTTGTCAGAATCT+CGG | + | chr3.2:23654763-23654782 | None:intergenic | 30.0% | |
| GTGTGTATATATATAGGATG+CGG | - | chr3.2:23655168-23655187 | MS.gene63629:CDS | 30.0% | |
| TCTTAGTGTGTTTGGTATTA+TGG | - | chr3.2:23654510-23654529 | MS.gene63629:intron | 30.0% | |
| TTAGTGTGTGTTTGGTATTA+TGG | - | chr3.2:23654380-23654399 | MS.gene63629:intron | 30.0% | |
| !! | GTGTAGCTTTTGAAAAATCA+CGG | - | chr3.2:23654730-23654749 | MS.gene63629:CDS | 30.0% |
| !! | TTGGTGGTGTGTATATATAT+AGG | - | chr3.2:23655162-23655181 | MS.gene63629:CDS | 30.0% |
| AAGCAAAGCTAGAATCAAAG+TGG | + | chr3.2:23654785-23654804 | None:intergenic | 35.0% | |
| AGTGTGTTTGGTATTATGGT+AGG | - | chr3.2:23654514-23654533 | MS.gene63629:intron | 35.0% | |
| ATGATGAATATTGCTGAACC+TGG | - | chr3.2:23655283-23655302 | MS.gene63629:CDS | 35.0% | |
| CACTTTGTGCCTATGAATAT+GGG | - | chr3.2:23653662-23653681 | MS.gene63629:intron | 35.0% | |
| GAAAACATCACCGTATTTGA+TGG | + | chr3.2:23653348-23653367 | None:intergenic | 35.0% | |
| GTGTAGCTTCTACAATATCA+CGG | + | chr3.2:23654441-23654460 | None:intergenic | 35.0% | |
| GTTTGGTATCTTAGTGTGTT+TGG | - | chr3.2:23654502-23654521 | MS.gene63629:intron | 35.0% | |
| TAATCAACTTAGTGCGTGTT+TGG | - | chr3.2:23654485-23654504 | MS.gene63629:intron | 35.0% | |
| TCTCTGCTGGAAAATGTAAT+TGG | + | chr3.2:23655059-23655078 | None:intergenic | 35.0% | |
| TGGTATTATGGATTTACGGT+GGG | - | chr3.2:23654392-23654411 | MS.gene63629:intron | 35.0% | |
| TGTATATATATAGGATGCGG+CGG | - | chr3.2:23655171-23655190 | MS.gene63629:CDS | 35.0% | |
| TGTTTGGTACTCAGTGTATT+TGG | - | chr3.2:23654629-23654648 | MS.gene63629:intron | 35.0% | |
| TTGGTATCGTAGTGTTTGTT+TGG | - | chr3.2:23654648-23654667 | MS.gene63629:intron | 35.0% | |
| TTGGTATTATGGATTTACGG+TGG | - | chr3.2:23654391-23654410 | MS.gene63629:intron | 35.0% | |
| TTTAATCTCTTCTTGAAGCC+TGG | + | chr3.2:23653318-23653337 | None:intergenic | 35.0% | |
| ! | ACCTAGTTAGTACTCTTTTG+CGG | + | chr3.2:23655096-23655115 | None:intergenic | 35.0% |
| ! | CAGCAGAATTCAACGTTTTA+GGG | - | chr3.2:23653429-23653448 | MS.gene63629:CDS | 35.0% |
| ! | TAAGTGTCTGTTCGTTTTAG+TGG | + | chr3.2:23654344-23654363 | None:intergenic | 35.0% |
| ! | TTGATGGTCAGATTATAGGA+CGG | - | chr3.2:23653621-23653640 | MS.gene63629:intron | 35.0% |
| !! | ATATATAAGCAACTCGGTGT+CGG | - | chr3.2:23654602-23654621 | MS.gene63629:intron | 35.0% |
| ACGACAGATAACTGTGATTC+TGG | + | chr3.2:23654690-23654709 | None:intergenic | 40.0% | |
| ACGGTAGATGACCGTAATTA+TGG | + | chr3.2:23654422-23654441 | None:intergenic | 40.0% | |
| ATGAATATTGCTGAACCTGG+TGG | - | chr3.2:23655286-23655305 | MS.gene63629:CDS | 40.0% | |
| CGGTGGGTATACCATAATTA+CGG | - | chr3.2:23654408-23654427 | MS.gene63629:intron | 40.0% | |
| CTTTCATGACTAATCTCTGC+TGG | + | chr3.2:23655072-23655091 | None:intergenic | 40.0% | |
| GACACCGAGTTGCTTATATA+TGG | + | chr3.2:23654603-23654622 | None:intergenic | 40.0% | |
| GAGTACTAACTAGGTTGTCT+AGG | - | chr3.2:23655101-23655120 | MS.gene63629:CDS | 40.0% | |
| GCACTTTGTGCCTATGAATA+TGG | - | chr3.2:23653661-23653680 | MS.gene63629:intron | 40.0% | |
| TCGTCATGGTATAGCAGAAA+TGG | - | chr3.2:23653532-23653551 | MS.gene63629:intron | 40.0% | |
| TGTTCGTGTGACAGAAACAA+CGG | - | chr3.2:23653568-23653587 | MS.gene63629:intron | 40.0% | |
| ! | GCAGCAGAATTCAACGTTTT+AGG | - | chr3.2:23653428-23653447 | MS.gene63629:CDS | 40.0% |
| !! | GATATCGGTTGGTGATAAAC+CGG | - | chr3.2:23653742-23653761 | MS.gene63629:intron | 40.0% |
| !! | TCCGCAAAAGAGTACTAACT+AGG | - | chr3.2:23655092-23655111 | MS.gene63629:CDS | 40.0% |
| !! | TGTCTGTTCGTTTTAGTGGT+AGG | + | chr3.2:23654340-23654359 | None:intergenic | 40.0% |
| AGAAGCTGTGTATGATGCAG+AGG | - | chr3.2:23655234-23655253 | MS.gene63629:CDS | 45.0% | |
| AGATGCCTCGTTGATCATTG+CGG | + | chr3.2:23653495-23653514 | None:intergenic | 45.0% | |
| ATCTCTTCTTGAAGCCTGGT+TGG | + | chr3.2:23653314-23653333 | None:intergenic | 45.0% | |
| GATGACGATCCGATCACTAT+CGG | - | chr3.2:23653698-23653717 | MS.gene63629:intron | 45.0% | |
| GCCTATGAATATGGGCTTTG+CGG | - | chr3.2:23653670-23653689 | MS.gene63629:intron | 45.0% | |
| TCTCTTCAATCCGATTAGCG+TGG | + | chr3.2:23653883-23653902 | None:intergenic | 45.0% | |
| TGGTAGGTATGCCAGAATCA+CGG | - | chr3.2:23654530-23654549 | MS.gene63629:intron | 45.0% | |
| ! | CATCAGTGCTGCTGAGATTA+GGG | - | chr3.2:23653787-23653806 | MS.gene63629:intron | 45.0% |
| ! | GGTGATGTTTTCAACGTCTC+TGG | - | chr3.2:23653356-23653375 | MS.gene63629:CDS | 45.0% |
| !! | GCGGTTGATGGTCAGATTAT+AGG | - | chr3.2:23653617-23653636 | MS.gene63629:intron | 45.0% |
| AACGCCTCTCCGATAGTGAT+CGG | + | chr3.2:23653710-23653729 | None:intergenic | 50.0% | |
| ACGACAGATGACCGTGATTC+TGG | + | chr3.2:23654544-23654563 | None:intergenic | 50.0% | |
| ATGGATGCAGCTATTCCACC+AGG | + | chr3.2:23655304-23655323 | None:intergenic | 50.0% | |
| ATTAGCGTGGCTGTTGAGAG+CGG | + | chr3.2:23653870-23653889 | None:intergenic | 50.0% | |
| CACAACAGCTAAGCTCAACC+AGG | - | chr3.2:23655327-23655346 | MS.gene63629:CDS | 50.0% | |
| CTCTCAACAGCCACGCTAAT+CGG | - | chr3.2:23653870-23653889 | MS.gene63629:intron | 50.0% | |
| CTGGTTGAGCTTAGCTGTTG+TGG | + | chr3.2:23655329-23655348 | None:intergenic | 50.0% | |
| CTTCTTGAAGCCTGGTTGGT+TGG | + | chr3.2:23653310-23653329 | None:intergenic | 50.0% | |
| GCCGCAAAGCCCATATTCAT+AGG | + | chr3.2:23653674-23653693 | None:intergenic | 50.0% | |
| TCAGCATCGTTCTGATCCAC+CGG | + | chr3.2:23653764-23653783 | None:intergenic | 50.0% | |
| TGAGACAATCTCCCCACAAG+TGG | - | chr3.2:23653391-23653410 | MS.gene63629:CDS | 50.0% | |
| TGGTGGAATAGCTGCATCCA+TGG | - | chr3.2:23655303-23655322 | MS.gene63629:CDS | 50.0% | |
| TTCTGCTGCAGCCATGTTAG+CGG | + | chr3.2:23653417-23653436 | None:intergenic | 50.0% | |
| ! | CCATCAGTGCTGCTGAGATT+AGG | - | chr3.2:23653786-23653805 | MS.gene63629:intron | 50.0% |
| ! | CCTAATCTCAGCAGCACTGA+TGG | + | chr3.2:23653789-23653808 | None:intergenic | 50.0% |
| ! | GTTAGAAGTGGCGGGGATAT+CGG | - | chr3.2:23653727-23653746 | MS.gene63629:intron | 50.0% |
| ! | TCAACGAGGCATCTGCACAA+TGG | - | chr3.2:23653501-23653520 | MS.gene63629:intron | 50.0% |
| !! | ATCGGTTGGTGATAAACCGG+TGG | - | chr3.2:23653745-23653764 | MS.gene63629:intron | 50.0% |
| !! | TATCGGAGAGGCGTTAGAAG+TGG | - | chr3.2:23653715-23653734 | MS.gene63629:intron | 50.0% |
| !!! | GTTTTAGGGCATGCACAACC+AGG | - | chr3.2:23653443-23653462 | MS.gene63629:CDS | 50.0% |
| AGATTAGGGCTACCGGAGAG+AGG | - | chr3.2:23653801-23653820 | MS.gene63629:intron | 55.0% | |
| ATAGGATGCGGCGGATAAGC+TGG | - | chr3.2:23655180-23655199 | MS.gene63629:CDS | 55.0% | |
| ATAGGCACAAAGTGCGCGTC+AGG | + | chr3.2:23653656-23653675 | None:intergenic | 55.0% | |
| CAATGGCTCGTTGGTCGTCA+TGG | - | chr3.2:23653518-23653537 | MS.gene63629:intron | 55.0% | |
| CATGTTAGCGGCCACTTGTG+GGG | + | chr3.2:23653405-23653424 | None:intergenic | 55.0% | |
| CCATGTTAGCGGCCACTTGT+GGG | + | chr3.2:23653406-23653425 | None:intergenic | 55.0% | |
| CGATCCGATCACTATCGGAG+AGG | - | chr3.2:23653703-23653722 | MS.gene63629:intron | 55.0% | |
| GAGCTTAGCTGTTGTGGCCA+TGG | + | chr3.2:23655323-23655342 | None:intergenic | 55.0% | |
| GCATCTGCACAATGGCTCGT+TGG | - | chr3.2:23653509-23653528 | MS.gene63629:intron | 55.0% | |
| GCTGCTGAGATTAGGGCTAC+CGG | - | chr3.2:23653794-23653813 | MS.gene63629:intron | 55.0% | |
| GGATAAGCTGGTGGAGGACA+GGG | - | chr3.2:23655192-23655211 | MS.gene63629:CDS | 55.0% | |
| TCAGATTATAGGACGGCGCG+TGG | - | chr3.2:23653628-23653647 | MS.gene63629:intron | 55.0% | |
| !! | ACTCGGTGTCGGTGTGTGTT+TGG | - | chr3.2:23654613-23654632 | MS.gene63629:intron | 55.0% |
| AGCGGCCGCAATGATCAACG+AGG | - | chr3.2:23653487-23653506 | MS.gene63629:intron | 60.0% | |
| AGGCCTCACACACCTCTCTC+CGG | + | chr3.2:23653816-23653835 | None:intergenic | 60.0% | |
| ATGGCTGCAGCAGGACTTCC+TGG | + | chr3.2:23653464-23653483 | None:intergenic | 60.0% | |
| CCCACAAGTGGCCGCTAACA+TGG | - | chr3.2:23653403-23653422 | MS.gene63629:CDS | 60.0% | |
| CGGATAAGCTGGTGGAGGAC+AGG | - | chr3.2:23655191-23655210 | MS.gene63629:CDS | 60.0% | |
| CTCCGTCACAACACGACGGT+CGG | + | chr3.2:23653597-23653616 | None:intergenic | 60.0% | |
| GATCATTGCGGCCGCTTGCA+TGG | + | chr3.2:23653483-23653502 | None:intergenic | 60.0% | |
| GCCATGTTAGCGGCCACTTG+TGG | + | chr3.2:23653407-23653426 | None:intergenic | 60.0% | |
| TAAGCTGGTGGAGGACAGGG+CGG | - | chr3.2:23655195-23655214 | MS.gene63629:CDS | 60.0% | |
| TCCTGCTGCAGCCATGCAAG+CGG | - | chr3.2:23653469-23653488 | MS.gene63629:intron | 60.0% | |
| TGAGCCATGGCCAACCAACC+AGG | - | chr3.2:23653297-23653316 | MS.gene63629:CDS | 60.0% | |
| TGCCGACCGTCGTGTTGTGA+CGG | - | chr3.2:23653592-23653611 | MS.gene63629:intron | 60.0% | |
| ! | CTACCGGAGAGAGGTGTGTG+AGG | - | chr3.2:23653810-23653829 | MS.gene63629:intron | 60.0% |
| ! | GAAGCCTGGTTGGTTGGCCA+TGG | + | chr3.2:23653304-23653323 | None:intergenic | 60.0% |
| ! | GAAGTGGCGGGGATATCGGT+TGG | - | chr3.2:23653731-23653750 | MS.gene63629:intron | 60.0% |
| ! | GTTGTGACGGAGGCGGTTGA+TGG | - | chr3.2:23653605-23653624 | MS.gene63629:intron | 60.0% |
| !! | CGGAGAGGCGTTAGAAGTGG+CGG | - | chr3.2:23653718-23653737 | MS.gene63629:intron | 60.0% |
| !! | GAGAGGCGTTAGAAGTGGCG+GGG | - | chr3.2:23653720-23653739 | MS.gene63629:intron | 60.0% |
| !! | GGAGAGGCGTTAGAAGTGGC+GGG | - | chr3.2:23653719-23653738 | MS.gene63629:intron | 60.0% |
| CCGCCTCCGTCACAACACGA+CGG | + | chr3.2:23653601-23653620 | None:intergenic | 65.0% | |
| CGACCGTCGTGTTGTGACGG+AGG | - | chr3.2:23653595-23653614 | MS.gene63629:intron | 65.0% | |
| GGATGCGGCGGATAAGCTGG+TGG | - | chr3.2:23655183-23655202 | MS.gene63629:CDS | 65.0% | |
| TGCGGCGGATAAGCTGGTGG+AGG | - | chr3.2:23655186-23655205 | MS.gene63629:CDS | 65.0% | |
| TGTGTGAGGCCTGGCGGTGT+CGG | - | chr3.2:23653824-23653843 | MS.gene63629:intron | 65.0% | |
| ! | CCGTCGTGTTGTGACGGAGG+CGG | - | chr3.2:23653598-23653617 | MS.gene63629:intron | 65.0% |
| ! | GAGAGGTGTGTGAGGCCTGG+CGG | - | chr3.2:23653818-23653837 | MS.gene63629:intron | 65.0% |
| ! | GGAGAGAGGTGTGTGAGGCC+TGG | - | chr3.2:23653815-23653834 | MS.gene63629:intron | 65.0% |
| GCCGCTTGCATGGCTGCAGC+AGG | + | chr3.2:23653473-23653492 | None:intergenic | 70.0% | |
| GTGTGAGGCCTGGCGGTGTC+GGG | - | chr3.2:23653825-23653844 | MS.gene63629:intron | 70.0% | |
| ! | TGTGAGGCCTGGCGGTGTCG+GGG | - | chr3.2:23653826-23653845 | MS.gene63629:intron | 70.0% |
| !! | GCCTGGCGGTGTCGGGGCGA+CGG | - | chr3.2:23653832-23653851 | MS.gene63629:intron | 80.0% |
| ! | GCCGTCGCCCCGACACCGCC+AGG | + | chr3.2:23653836-23653855 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 23653296 | 23655357 | 23653296 | ID=MS.gene63629 |
| chr3.2 | mRNA | 23653296 | 23655357 | 23653296 | ID=MS.gene63629.t1;Parent=MS.gene63629 |
| chr3.2 | exon | 23654725 | 23655357 | 23654725 | ID=MS.gene63629.t1.exon1;Parent=MS.gene63629.t1 |
| chr3.2 | CDS | 23654725 | 23655357 | 23654725 | ID=cds.MS.gene63629.t1;Parent=MS.gene63629.t1 |
| chr3.2 | exon | 23653296 | 23653469 | 23653296 | ID=MS.gene63629.t1.exon2;Parent=MS.gene63629.t1 |
| chr3.2 | CDS | 23653296 | 23653469 | 23653296 | ID=cds.MS.gene63629.t1;Parent=MS.gene63629.t1 |
| Gene Sequence |
| Protein sequence |
