AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050945


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050945.t1 MTR_7g112350 98.496 532 8 0 1 532 1 532 0.0 1078
MS.gene050945.t1 MTR_1g083810 88.910 532 59 0 1 532 1 532 0.0 989
MS.gene050945.t1 MTR_2g034900 83.271 532 85 3 1 531 1 529 0.0 910
MS.gene050945.t1 MTR_4g121435 71.985 539 132 6 1 531 1 528 0.0 783
MS.gene050945.t1 MTR_4g131510 77.230 426 97 0 79 504 1 426 0.0 699
MS.gene050945.t1 MTR_4g133040 71.163 430 122 2 70 498 3 431 0.0 635
MS.gene050945.t1 MTR_4g133030 73.005 426 114 1 83 507 2 427 0.0 631
MS.gene050945.t1 MTR_8g027585 71.868 423 118 1 110 532 25 446 0.0 623
MS.gene050945.t1 MTR_4g131000 66.234 462 118 3 79 504 1 460 0.0 603
MS.gene050945.t1 MTR_4g132980 67.290 428 111 2 79 506 1 399 0.0 577
MS.gene050945.t1 MTR_4g127570 58.605 430 107 4 83 511 2 361 9.09e-164 472
MS.gene050945.t1 MTR_1g053470 66.768 328 93 4 208 532 1 315 1.56e-147 426
MS.gene050945.t1 MTR_1g053470 26.047 215 145 6 108 314 30 238 2.93e-11 65.1
MS.gene050945.t1 MTR_7g112150 47.399 519 250 12 1 499 1 516 4.60e-147 432
MS.gene050945.t1 MTR_1g053470 70.000 300 87 3 208 504 1 300 4.55e-143 414
MS.gene050945.t1 MTR_1g053470 26.047 215 145 6 108 314 30 238 2.77e-11 65.1
MS.gene050945.t1 MTR_1g053470 66.563 323 92 4 208 527 1 310 8.86e-143 416
MS.gene050945.t1 MTR_1g053470 26.047 215 145 6 108 314 30 238 9.57e-11 63.9
MS.gene050945.t1 MTR_4g132980 68.403 288 74 1 219 506 1 271 5.11e-134 392
MS.gene050945.t1 MTR_4g013265 50.708 424 96 7 110 532 11 322 2.76e-128 377
MS.gene050945.t1 MTR_7g112160 43.725 510 246 13 14 504 15 502 1.01e-111 342
MS.gene050945.t1 MTR_7g113400 46.489 413 200 10 14 408 15 424 8.01e-102 313
MS.gene050945.t1 MTR_4g132960 63.684 190 52 1 318 507 3 175 1.09e-71 228
MS.gene050945.t1 MTR_4g132967 58.421 190 45 1 318 507 7 162 1.36e-62 204
MS.gene050945.t1 MTR_1g066760 30.116 518 317 15 14 499 10 514 1.25e-53 189
MS.gene050945.t1 MTR_4g124270 33.146 178 82 5 119 290 11 157 7.60e-18 81.6
MS.gene050945.t1 MTR_4g124270 61.017 59 23 0 323 381 64 122 4.68e-15 73.6
MS.gene050945.t1 MTR_7g113402 47.253 91 33 3 420 508 22 99 1.98e-14 69.7
MS.gene050945.t1 MTR_7g059405 27.519 258 180 6 135 392 376 626 5.82e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050945.t1 AT4G16143 80.224 536 99 2 1 531 1 534 0.0 868
MS.gene050945.t1 AT4G16143 80.224 536 99 2 1 531 1 534 0.0 868
MS.gene050945.t1 AT3G06720 79.252 535 105 4 1 532 1 532 0.0 864
MS.gene050945.t1 AT3G06720 79.252 535 105 4 1 532 1 532 0.0 864
MS.gene050945.t1 AT1G09270 73.383 541 130 6 1 531 1 537 0.0 785
MS.gene050945.t1 AT1G09270 73.383 541 130 6 1 531 1 537 0.0 785
MS.gene050945.t1 AT1G02690 69.630 540 152 5 1 531 1 537 0.0 771
MS.gene050945.t1 AT1G02690 69.501 541 152 6 1 531 1 538 0.0 766
MS.gene050945.t1 AT4G02150 70.315 539 143 5 1 531 1 530 0.0 761
MS.gene050945.t1 AT1G09270 77.193 456 99 3 79 531 2 455 0.0 705
MS.gene050945.t1 AT5G49310 63.872 501 174 4 1 501 1 494 0.0 633
MS.gene050945.t1 AT3G05720 64.300 493 157 6 13 497 9 490 0.0 613
MS.gene050945.t1 AT3G05720 64.300 493 157 6 13 497 9 490 0.0 613
MS.gene050945.t1 AT4G02150 71.325 415 106 3 1 408 1 409 0.0 603
MS.gene050945.t1 AT5G52000 52.381 420 187 6 79 497 14 421 1.12e-143 421
MS.gene050945.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene050945.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene050945.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene050945.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene050945.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene050945.t1 AT1G32880 63.265 147 49 3 363 507 40 183 8.39e-56 185
MS.gene050945.t1 AT5G03070 28.958 518 323 12 14 499 10 514 1.24e-51 184

Find 145 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCCTGCCGTGCCTTC+TGG 0.268271 7.1:-3722765 MS.gene050945:CDS
TGGGAACAAGCAACAGATTC+AGG 0.277528 7.1:-3723441 MS.gene050945:intron
GTGATTGATGCCAGTATAAT+TGG 0.305012 7.1:-3723328 MS.gene050945:CDS
CCAGGTGATGCTTCTCAATC+AGG 0.305394 7.1:-3722807 MS.gene050945:CDS
CACCTACCAGCCTTGGTTAC+AGG 0.310563 7.1:-3726168 MS.gene050945:CDS
ATCTAATCTACTCGAGAAAA+AGG 0.313044 7.1:-3726741 MS.gene050945:intron
GATTGACGAAGCTGAGGGTT+TGG 0.332266 7.1:-3722934 MS.gene050945:CDS
AGGGCTTGAAAACATCTTAA+AGG 0.333351 7.1:-3723015 MS.gene050945:CDS
TTTCTTCCCTCCGATTCTTC+CGG 0.351570 7.1:+3726822 None:intergenic
TGCCAGTATAATTGGTCCTT+TGG 0.355834 7.1:-3723320 MS.gene050945:CDS
GTTTCTGAGCATAGAAAGTT+TGG 0.355939 7.1:+3725165 None:intergenic
CAATCAGGGTTCAACTTTGG+TGG 0.368535 7.1:-3722792 MS.gene050945:CDS
TGTCAGGCCGTGTGGGCATT+GGG 0.369223 7.1:-3725277 MS.gene050945:intron
AGACTTCTTCATCATTTGAA+TGG 0.376843 7.1:+3724343 None:intergenic
GCATCAAGAAGGAAGCTTGC+TGG 0.387204 7.1:-3723484 MS.gene050945:CDS
CTGTCAGGCCGTGTGGGCAT+TGG 0.388924 7.1:-3725278 MS.gene050945:intron
GCTTTGACAAATATAGCTTC+TGG 0.398936 7.1:-3725790 MS.gene050945:CDS
CAGCCTTGGTTACAGGAATC+TGG 0.399141 7.1:-3726161 MS.gene050945:CDS
TCGGTTCTCGCGTTTGCGTT+AGG 0.408259 7.1:+3726923 None:intergenic
TGGAGCTTTGCTTCCTCTGT+TGG 0.414916 7.1:-3725206 MS.gene050945:CDS
TAGTGATGATGTTCGTGAAC+AGG 0.421824 7.1:-3725695 MS.gene050945:intron
ATTGTGACAGTTTGTCTTGA+AGG 0.422808 7.1:-3723035 MS.gene050945:CDS
AGATGCCGTGATCTTGTTCT+CGG 0.423165 7.1:-3725232 MS.gene050945:CDS
TTTCGGAAGTTGCTTTCAAT+TGG 0.424061 7.1:-3726099 MS.gene050945:intron
TTGAGGCAACAACTCAGTTT+CGG 0.428701 7.1:-3726116 MS.gene050945:CDS
AAGATATGAAAGTGCCCAAC+AGG 0.430566 7.1:+3724311 None:intergenic
TCTCAATCAGGGTTCAACTT+TGG 0.432782 7.1:-3722795 MS.gene050945:CDS
TGAAGATTCTCGAGACATAC+TGG 0.452976 7.1:-3722857 MS.gene050945:CDS
GACCAAAGGACCAATTATAC+TGG 0.463096 7.1:+3723318 None:intergenic
CAACACTGAGATTTATGAAA+AGG 0.463560 7.1:-3722883 MS.gene050945:CDS
CTGGCAAGTGCAGGAAGTGC+AGG 0.465783 7.1:+3724372 None:intergenic
GCACTTTCATATCTTTCTGA+TGG 0.469094 7.1:-3724303 MS.gene050945:CDS
AGTCTTGACTGATGCCTGTT+GGG 0.470829 7.1:-3724325 MS.gene050945:CDS
GTTGTAGTTTGAGGCAGCAT+GGG 0.471388 7.1:-3725812 MS.gene050945:intron
AGACAAACTGTCACAATCCT+AGG 0.471935 7.1:+3723041 None:intergenic
TGGGCATTGGGAAATGTTGC+TGG 0.473260 7.1:-3725265 MS.gene050945:CDS
GGACACTCTCAAACTTCTGC+AGG 0.478892 7.1:-3725135 MS.gene050945:CDS
TTTCCAACTGTGCGTAGAGC+AGG 0.479185 7.1:+3724096 None:intergenic
CGTGATCTTGTTCTCGGTCA+TGG 0.484918 7.1:-3725226 MS.gene050945:CDS
TGATAATAACATGCAGTTTG+AGG 0.493472 7.1:-3726133 MS.gene050945:CDS
TTGTGACAGTTTGTCTTGAA+GGG 0.493627 7.1:-3723034 MS.gene050945:CDS
TACTCACATGTCCTGATCCT+AGG 0.494731 7.1:-3723058 MS.gene050945:CDS
CAGATTCCTGTAACCAAGGC+TGG 0.496109 7.1:+3726162 None:intergenic
ATCATTTGAATGGATGAGAC+TGG 0.497906 7.1:+3724353 None:intergenic
ATCAAGAGGTTCTTAAGAGA+AGG 0.500451 7.1:+3723524 None:intergenic
TTGAAGCTGGTGTCTGTAGC+CGG 0.506023 7.1:-3724254 MS.gene050945:CDS
GCATCACTGATGGCGTGAAT+CGG 0.506234 7.1:-3722968 MS.gene050945:CDS
CAGGTGATGCTTCTCAATCA+GGG 0.510659 7.1:-3722806 MS.gene050945:CDS
TGGTTGAGATCCGGAAGAAT+CGG 0.510945 7.1:-3726832 MS.gene050945:CDS
CTTGAAAACATCTTAAAGGT+AGG 0.512889 7.1:-3723011 MS.gene050945:CDS
AGGATAACTTGGTTGAGATC+CGG 0.514824 7.1:-3726841 MS.gene050945:CDS
TAATGCACCCTTGACTTACC+AGG 0.515624 7.1:+3723096 None:intergenic
GGTGCAAATGACAAAATTCA+AGG 0.516277 7.1:-3724282 MS.gene050945:CDS
CCTGATTGAGAAGCATCACC+TGG 0.519394 7.1:+3722807 None:intergenic
TTGAAAACATCTTAAAGGTA+GGG 0.520099 7.1:-3723010 MS.gene050945:CDS
ACAATTTCGAACATCACAGC+TGG 0.521802 7.1:-3723461 MS.gene050945:CDS
GGAATAAGCACAGAAGGAGA+TGG 0.522068 7.1:+3724117 None:intergenic
AGTCCAGATTCCTGTAACCA+AGG 0.523005 7.1:+3726158 None:intergenic
AAAATTGGTCGACAGGTACC+TGG 0.523379 7.1:-3723114 MS.gene050945:intron
GGCAATCTCAAATGCTACAT+CGG 0.524735 7.1:-3723248 MS.gene050945:CDS
GTGGCGGTTGATGCGGAAGA+AGG 0.528330 7.1:-3726878 MS.gene050945:CDS
AGAACGTAGCCCACCGATTG+AGG 0.529104 7.1:-3725985 MS.gene050945:CDS
ACCTGATCAAAAGCAGGTTG+TGG 0.529289 7.1:+3725106 None:intergenic
GCAATCTCAAATGCTACATC+GGG 0.530239 7.1:-3723247 MS.gene050945:CDS
GCTTGTATAACCTCCTCAAT+CGG 0.530974 7.1:+3725972 None:intergenic
AGATTAGATTGAACTGATGC+AGG 0.532270 7.1:+3726755 None:intergenic
GTTCCTGCCGTGCCTTCTGG+TGG 0.536067 7.1:-3722762 MS.gene050945:CDS
TCTCAGTGTTGTCATGACTC+TGG 0.536088 7.1:+3722895 None:intergenic
TGTTGTAGTTTGAGGCAGCA+TGG 0.536379 7.1:-3725813 MS.gene050945:intron
GATGACGAGGCTATGCCTCC+AGG 0.538922 7.1:-3722825 MS.gene050945:CDS
ACTGTCACAATCCTAGGATC+AGG 0.541962 7.1:+3723047 None:intergenic
GTTGGAACACCTACCAGCCT+TGG 0.541974 7.1:-3726175 MS.gene050945:CDS
AGAACAAGATCACGGCATCT+AGG 0.541982 7.1:+3725235 None:intergenic
CTTTATACCTGATCAAAAGC+AGG 0.544346 7.1:+3725100 None:intergenic
AAACACTAAGGTAGTAATTG+AGG 0.546623 7.1:-3725758 MS.gene050945:CDS
AGAAGGTCGGAGACGGAGAG+AGG 0.547856 7.1:-3726861 MS.gene050945:CDS
TGTGGACTGTCAGGCCGTGT+GGG 0.549793 7.1:-3725284 MS.gene050945:intron
AATCCACCAGAAGGCACGGC+AGG 0.551892 7.1:+3722759 None:intergenic
GTATCGATTCCGACGAACCT+CGG 0.552883 7.1:+3726904 None:intergenic
AGAAGGCACGGCAGGAACAT+CGG 0.557422 7.1:+3722767 None:intergenic
TATCAAGAAGGAAGCAGCCT+GGG 0.559372 7.1:-3723269 MS.gene050945:CDS
GAGACGGAGAGAGGATAACT+TGG 0.560975 7.1:-3726852 MS.gene050945:CDS
ATTCCTGCTCTACGCACAGT+TGG 0.563062 7.1:-3724099 MS.gene050945:CDS
ATTCAAGGCGTAATTGAAGC+TGG 0.564008 7.1:-3724267 MS.gene050945:CDS
ATCTCAAATGCTACATCGGG+TGG 0.565698 7.1:-3723244 MS.gene050945:CDS
TGAAAACATCTTAAAGGTAG+GGG 0.566752 7.1:-3723009 MS.gene050945:CDS
AGAGCAGGAATAAGCACAGA+AGG 0.573010 7.1:+3724111 None:intergenic
ATGCGGAAGAAGGTCGGAGA+CGG 0.573816 7.1:-3726868 MS.gene050945:CDS
ATTGAGGAGGTTATACAAGC+TGG 0.574779 7.1:-3725969 MS.gene050945:CDS
GACAGGTACCTGGTAAGTCA+AGG 0.575549 7.1:-3723104 MS.gene050945:intron
AAGAAAGCTTGCAGAAGAAG+AGG 0.576091 7.1:-3726805 MS.gene050945:CDS
TTGCAGAAGAAGAGGCGTGA+AGG 0.577170 7.1:-3726797 MS.gene050945:CDS
AAGATAATAACCTGCAGCTG+TGG 0.578665 7.1:+3725903 None:intergenic
GACACTCTCAAACTTCTGCA+GGG 0.582716 7.1:-3725134 MS.gene050945:CDS
ATTCACGCCATCAGTGATGC+CGG 0.582855 7.1:+3722971 None:intergenic
GATTCTCGAGACATACTGGT+TGG 0.583097 7.1:-3722853 MS.gene050945:CDS
CGGTTGATGCGGAAGAAGGT+CGG 0.583578 7.1:-3726874 MS.gene050945:CDS
TGTAGCATTTGAGATTGCCC+AGG 0.583736 7.1:+3723252 None:intergenic
AAGTCTTGACTGATGCCTGT+TGG 0.583997 7.1:-3724326 MS.gene050945:CDS
TGGAACATCTGAAAACACTA+AGG 0.585901 7.1:-3725770 MS.gene050945:CDS
TGGATGAGACTGGCAAGTGC+AGG 0.586919 7.1:+3724363 None:intergenic
GTGTGGACTGTCAGGCCGTG+TGG 0.587261 7.1:-3725285 MS.gene050945:intron
ATATCAAGAAGGAAGCAGCC+TGG 0.587274 7.1:-3723270 MS.gene050945:CDS
GTTGAATCCACCAGAAGGCA+CGG 0.589872 7.1:+3722755 None:intergenic
TCTCGAGACATACTGGTTGG+AGG 0.590172 7.1:-3722850 MS.gene050945:CDS
GAATAAGCACAGAAGGAGAT+GGG 0.590390 7.1:+3724118 None:intergenic
ACAGTTGGAAATATTGTCAC+TGG 0.591504 7.1:-3724084 MS.gene050945:CDS
GGTTCGTCGGAATCGATACA+AGG 0.595021 7.1:-3726900 MS.gene050945:CDS
ACGCGAGAACCGAGGTTCGT+CGG 0.595335 7.1:-3726913 MS.gene050945:CDS
TGTATAACCTCCTCAATCGG+TGG 0.596128 7.1:+3725975 None:intergenic
TGCTGAGTTTGATATCAAGA+AGG 0.598148 7.1:-3723281 MS.gene050945:CDS
CAGTGTTGTCATGACTCTGG+AGG 0.600196 7.1:+3722898 None:intergenic
AACATTTCCCAATGCCCACA+CGG 0.600269 7.1:+3725270 None:intergenic
ATACAAGGTGGCGGTTGATG+CGG 0.609006 7.1:-3726885 MS.gene050945:CDS
GTATAACCTCCTCAATCGGT+GGG 0.609405 7.1:+3725976 None:intergenic
TTGAGATCCGGAAGAATCGG+AGG 0.610209 7.1:-3726829 MS.gene050945:CDS
ACAGTAGAAGCTCAACAAGC+CGG 0.611612 7.1:+3724235 None:intergenic
ACTAAGGTAGTAATTGAGGC+AGG 0.612619 7.1:-3725754 MS.gene050945:CDS
ACTGATGCAGGCATCTGCTG+AGG 0.637302 7.1:+3726767 None:intergenic
CTGGTTGGAGGAAGATGACG+AGG 0.640896 7.1:-3722838 MS.gene050945:CDS
TAAGAGAAGGAAGAACTCGA+TGG 0.641399 7.1:+3723537 None:intergenic
ACAGGTACCTGGTAAGTCAA+GGG 0.643325 7.1:-3723103 MS.gene050945:intron
TGAAATGATTGACGAAGCTG+AGG 0.643868 7.1:-3722940 MS.gene050945:CDS
CAATTTCGAACATCACAGCT+GGG 0.644095 7.1:-3723460 MS.gene050945:CDS
ACATGTGAGTAGATCACACA+AGG 0.644923 7.1:+3723070 None:intergenic
TTCCTGTAACCAAGGCTGGT+AGG 0.648193 7.1:+3726166 None:intergenic
TGGAGATGACTTGCAGACAC+AGG 0.648488 7.1:-3724064 MS.gene050945:intron
CTATGCTCAGAAACGCCACA+TGG 0.649323 7.1:-3725156 MS.gene050945:CDS
TCATTCAATTGCGCCAACAG+AGG 0.649416 7.1:+3725193 None:intergenic
TGTTCACGAACATCATCACT+AGG 0.652458 7.1:+3725697 None:intergenic
CATCATCACTAGGAGAAGCA+AGG 0.654239 7.1:+3725707 None:intergenic
ACACTCTCAAACTTCTGCAG+GGG 0.658228 7.1:-3725133 MS.gene050945:CDS
TTAAAGTTGAATCCACCAGA+AGG 0.661830 7.1:+3722750 None:intergenic
TCGGAATCGATACAAGGTGG+CGG 0.663630 7.1:-3726894 MS.gene050945:CDS
TGAGATCCGGAAGAATCGGA+GGG 0.664863 7.1:-3726828 MS.gene050945:CDS
ACGTAGCCCACCGATTGAGG+AGG 0.667976 7.1:-3725982 MS.gene050945:CDS
CATGACCGAGAACAAGATCA+CGG 0.670358 7.1:+3725227 None:intergenic
TAACGCAAACGCGAGAACCG+AGG 0.690745 7.1:-3726921 MS.gene050945:CDS
TAAGCACAGAAGGAGATGGG+TGG 0.711417 7.1:+3724121 None:intergenic
GAAATGATTGACGAAGCTGA+GGG 0.713200 7.1:-3722939 MS.gene050945:CDS
GATTGAGAAGCATCACCTGG+AGG 0.716664 7.1:+3722810 None:intergenic
ATCAAGAACTCAATAAAACG+AGG 0.733523 7.1:+3725939 None:intergenic
TCGTCGGAATCGATACAAGG+TGG 0.735526 7.1:-3726897 MS.gene050945:CDS
CATGTGAGTAGATCACACAA+GGG 0.757129 7.1:+3723071 None:intergenic
GAAGTTTGAGAGTGTCCATG+TGG 0.759250 7.1:+3725141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATAACTCA+TGG - chr7.1:3723244-3723263 MS.gene050945:CDS 10.0%
!! TAGTTTATATTGAAAAATTA+TGG - chr7.1:3724892-3724911 MS.gene050945:intron 10.0%
!!! TATTATTTTACTTTTGATTT+TGG - chr7.1:3726080-3726099 MS.gene050945:intron 10.0%
!!! TGAAATTCTAATTATTATTT+TGG - chr7.1:3725527-3725546 MS.gene050945:intron 10.0%
!!! TTTTGTATACAATTTTTTAA+GGG - chr7.1:3723643-3723662 MS.gene050945:intron 10.0%
!!! TTTTTGTATACAATTTTTTA+AGG - chr7.1:3723642-3723661 MS.gene050945:intron 10.0%
!! AATAAGAAAATTCAAACAAA+TGG + chr7.1:3724808-3724827 None:intergenic 15.0%
!! CAGATATAAACAAATATTAA+AGG + chr7.1:3724755-3724774 None:intergenic 15.0%
!!! TGTCATAATCTTTTTAAAAT+TGG - chr7.1:3726552-3726571 MS.gene050945:intron 15.0%
!!! TTTTATAACTATTAATCAAG+AGG + chr7.1:3726174-3726193 None:intergenic 15.0%
!! ACAAGGTTTGATTAATATTA+TGG - chr7.1:3723437-3723456 MS.gene050945:intron 20.0%
!! ACTTCATTAACAAAAAAAGA+AGG + chr7.1:3724104-3724123 None:intergenic 20.0%
!! CTATTGCATAAAATAAAACA+AGG + chr7.1:3723804-3723823 None:intergenic 20.0%
!! CTTCATTAACAAAAAAAGAA+GGG + chr7.1:3724103-3724122 None:intergenic 20.0%
!! TGAAATTAAAATTAAACGCA+TGG - chr7.1:3725747-3725766 MS.gene050945:CDS 20.0%
!! TTAAAAAGATTATGACATCT+CGG + chr7.1:3726549-3726568 None:intergenic 20.0%
!!! AATTGAGAAATTGATAATAC+TGG - chr7.1:3723045-3723064 MS.gene050945:CDS 20.0%
!!! ACCATATAAATTTTACTGAT+AGG + chr7.1:3724057-3724076 None:intergenic 20.0%
!!! ATGGTTTCTTACTTTTTATT+GGG - chr7.1:3724072-3724091 MS.gene050945:CDS 20.0%
!!! CAAAATTGATGATAGTAATT+AGG - chr7.1:3723174-3723193 MS.gene050945:intron 20.0%
!!! TATGGTTTCTTACTTTTTAT+TGG - chr7.1:3724071-3724090 MS.gene050945:CDS 20.0%
!!! TGATAATTTTTCAACATACA+AGG + chr7.1:3724853-3724872 None:intergenic 20.0%
!!! TTATAAAAAAAGCATCAAGA+AGG - chr7.1:3726186-3726205 MS.gene050945:intron 20.0%
!!! TTTTTGTTAATGAAGTTAAC+CGG - chr7.1:3724108-3724127 MS.gene050945:CDS 20.0%
! AACGTAGTAAAGTAGAAAAT+CGG + chr7.1:3723004-3723023 None:intergenic 25.0%
! AATTAAAATTAAACGCATGG+AGG - chr7.1:3725750-3725769 MS.gene050945:CDS 25.0%
! ACAACACAGGTTAAATAATA+TGG + chr7.1:3725000-3725019 None:intergenic 25.0%
! ATTTCACATCATAATAACCA+AGG + chr7.1:3725513-3725532 None:intergenic 25.0%
! CGTTGGATAAGTTATTTATT+AGG - chr7.1:3723020-3723039 MS.gene050945:CDS 25.0%
! CTTGATTCTTGAAAATTTAC+AGG - chr7.1:3726328-3726347 MS.gene050945:intron 25.0%
! GCCTATCAGTAAAATTTATA+TGG - chr7.1:3724053-3724072 MS.gene050945:intron 25.0%
! GGTTTGATTAATATTATGGT+AGG - chr7.1:3723441-3723460 MS.gene050945:intron 25.0%
! TATAAAACCAACAAAATCAC+CGG + chr7.1:3726513-3726532 None:intergenic 25.0%
! TGAATCAAAACAACATAAAC+AGG + chr7.1:3723208-3723227 None:intergenic 25.0%
! TTGAAAACATCTTAAAGGTA+GGG - chr7.1:3726671-3726690 MS.gene050945:intron 25.0%
! TTTCACATCATAATAACCAA+GGG + chr7.1:3725512-3725531 None:intergenic 25.0%
!! AAATTTCTTGTTCAAGTTCT+AGG + chr7.1:3724727-3724746 None:intergenic 25.0%
!! AGAACTTGAACAAGAAATTT+TGG - chr7.1:3724727-3724746 MS.gene050945:intron 25.0%
!! ATATATTGATAGTAGCGATT+AGG - chr7.1:3723083-3723102 MS.gene050945:CDS 25.0%
!! GAAATTGATAATACTGGATT+AGG - chr7.1:3723051-3723070 MS.gene050945:CDS 25.0%
!! TTTTATTGAGTTCTTGATGA+GGG - chr7.1:3723747-3723766 MS.gene050945:intron 25.0%
!!! ACAATTTTTTAAGGGACATT+TGG - chr7.1:3723651-3723670 MS.gene050945:intron 25.0%
!!! AGCAGTGTTTGTTAATTTTA+AGG - chr7.1:3723323-3723342 MS.gene050945:CDS 25.0%
!!! GCAGTGTTTGTTAATTTTAA+GGG - chr7.1:3723324-3723343 MS.gene050945:CDS 25.0%
!!! GTTCACTTTGATTTTAGATT+TGG - chr7.1:3724163-3724182 MS.gene050945:intron 25.0%
!!! TGATTTTGGTTTGTGTTAAT+GGG - chr7.1:3726094-3726113 MS.gene050945:intron 25.0%
!!! TTGATTTTGGTTTGTGTTAA+TGG - chr7.1:3726093-3726112 MS.gene050945:intron 25.0%
AAACACTAAGGTAGTAATTG+AGG - chr7.1:3723923-3723942 MS.gene050945:intron 30.0%
AAATGAAGCATAACAAGTAG+GGG + chr7.1:3723296-3723315 None:intergenic 30.0%
AACATGTTCATGATATTCAC+TGG - chr7.1:3723374-3723393 MS.gene050945:intron 30.0%
AATAAAGGTGGTCAAATTTG+TGG - chr7.1:3724960-3724979 MS.gene050945:intron 30.0%
AATTGAGAAATTGATACTGC+TGG - chr7.1:3723108-3723127 MS.gene050945:intron 30.0%
ACACAAGTATAAAGTCCATT+TGG - chr7.1:3724672-3724691 MS.gene050945:intron 30.0%
AGACTTCTTCATCATTTGAA+TGG + chr7.1:3725341-3725360 None:intergenic 30.0%
AGAGAAATAGTAATACACAC+TGG - chr7.1:3725706-3725725 MS.gene050945:CDS 30.0%
ATAAAACCAACAAAATCACC+GGG + chr7.1:3726512-3726531 None:intergenic 30.0%
ATCAAGAACTCAATAAAACG+AGG + chr7.1:3723745-3723764 None:intergenic 30.0%
ATCTAATCTACTCGAGAAAA+AGG - chr7.1:3722940-3722959 MS.gene050945:CDS 30.0%
ATCTGTGTTATCTTTGCATT+TGG - chr7.1:3726285-3726304 MS.gene050945:intron 30.0%
CAAATGAAGCATAACAAGTA+GGG + chr7.1:3723297-3723316 None:intergenic 30.0%
CAACACTGAGATTTATGAAA+AGG - chr7.1:3726798-3726817 MS.gene050945:CDS 30.0%
CTTAAATTTACAATGTTCCC+CGG - chr7.1:3726491-3726510 MS.gene050945:intron 30.0%
CTTGAAAACATCTTAAAGGT+AGG - chr7.1:3726670-3726689 MS.gene050945:intron 30.0%
GCGAATTATAATGAGGAAAT+TGG + chr7.1:3725885-3725904 None:intergenic 30.0%
TAGTGGCATCTTGTAAATAA+AGG - chr7.1:3724945-3724964 MS.gene050945:intron 30.0%
TCAAATGAAGCATAACAAGT+AGG + chr7.1:3723298-3723317 None:intergenic 30.0%
TGAAAACATCTTAAAGGTAG+GGG - chr7.1:3726672-3726691 MS.gene050945:intron 30.0%
TGACAAAGCGAATTATAATG+AGG + chr7.1:3725892-3725911 None:intergenic 30.0%
TGATAATAACATGCAGTTTG+AGG - chr7.1:3723548-3723567 MS.gene050945:CDS 30.0%
TTACTGATAGGCAAAAACAA+AGG + chr7.1:3724045-3724064 None:intergenic 30.0%
TTACTGTATGTTGTAGTTTG+AGG - chr7.1:3723860-3723879 MS.gene050945:intron 30.0%
TTCTATTGCTGCTAATCATA+AGG + chr7.1:3726026-3726045 None:intergenic 30.0%
! AATTTGTGGTTTGTATGTGA+AGG - chr7.1:3724974-3724993 MS.gene050945:intron 30.0%
! GATTTTCTACTTTACTACGT+TGG - chr7.1:3723003-3723022 MS.gene050945:CDS 30.0%
!! GTTTTATTGAGTTCTTGATG+AGG - chr7.1:3723746-3723765 MS.gene050945:intron 30.0%
!!! GATTTTGGTTTGTGTTAATG+GGG - chr7.1:3726095-3726114 MS.gene050945:intron 30.0%
!!! TCTTTTTAAAATTGGTCGAC+AGG - chr7.1:3726560-3726579 MS.gene050945:intron 30.0%
AAGTCCATTTGGTACACAAA+TGG - chr7.1:3724683-3724702 MS.gene050945:intron 35.0%
ACAGTTGGAAATATTGTCAC+TGG - chr7.1:3725597-3725616 MS.gene050945:intron 35.0%
AGATTAGATTGAACTGATGC+AGG + chr7.1:3722929-3722948 None:intergenic 35.0%
AGGAAATTTGTGCAATTGGA+CGG + chr7.1:3725948-3725967 None:intergenic 35.0%
AGGGCTTGAAAACATCTTAA+AGG - chr7.1:3726666-3726685 MS.gene050945:intron 35.0%
AGTCAGCAAAACAAAAAGAC+TGG + chr7.1:3725211-3725230 None:intergenic 35.0%
AGTCCATTTGGTACACAAAT+GGG - chr7.1:3724684-3724703 MS.gene050945:intron 35.0%
AGTGCAACAGAATATACACA+TGG + chr7.1:3725985-3726004 None:intergenic 35.0%
ATCAAGAGGTTCTTAAGAGA+AGG + chr7.1:3726160-3726179 None:intergenic 35.0%
ATCATTTGAATGGATGAGAC+TGG + chr7.1:3725331-3725350 None:intergenic 35.0%
ATGAGATAGATCACACTAGA+TGG + chr7.1:3724350-3724369 None:intergenic 35.0%
ATTGTGACAGTTTGTCTTGA+AGG - chr7.1:3726646-3726665 MS.gene050945:intron 35.0%
CAAAAAGACTGGTAAAACCA+AGG + chr7.1:3725200-3725219 None:intergenic 35.0%
CACACAGATGAGTAATTACA+AGG - chr7.1:3724641-3724660 MS.gene050945:intron 35.0%
CGGGGAACATTGTAAATTTA+AGG + chr7.1:3726493-3726512 None:intergenic 35.0%
CTTTATACCTGATCAAAAGC+AGG + chr7.1:3724584-3724603 None:intergenic 35.0%
GAAATTGATACTGCTGGATT+AGG - chr7.1:3723114-3723133 MS.gene050945:intron 35.0%
GCACTTTCATATCTTTCTGA+TGG - chr7.1:3725378-3725397 MS.gene050945:intron 35.0%
GCTTTGACAAATATAGCTTC+TGG - chr7.1:3723891-3723910 MS.gene050945:intron 35.0%
GGTGCAAATGACAAAATTCA+AGG - chr7.1:3725399-3725418 MS.gene050945:intron 35.0%
GTGATTGATGCCAGTATAAT+TGG - chr7.1:3726353-3726372 MS.gene050945:intron 35.0%
GTTTCTGAGCATAGAAAGTT+TGG + chr7.1:3724519-3724538 None:intergenic 35.0%
TAAAACCAACAAAATCACCG+GGG + chr7.1:3726511-3726530 None:intergenic 35.0%
TATTGCTGCTAATCATAAGG+AGG + chr7.1:3726023-3726042 None:intergenic 35.0%
TCTCATGAACAACTCAAGTA+TGG - chr7.1:3726461-3726480 MS.gene050945:intron 35.0%
TGAGAGGAAATTTGTGCAAT+TGG + chr7.1:3725952-3725971 None:intergenic 35.0%
TGCTGAGTTTGATATCAAGA+AGG - chr7.1:3726400-3726419 MS.gene050945:intron 35.0%
TGGAACATCTGAAAACACTA+AGG - chr7.1:3723911-3723930 MS.gene050945:intron 35.0%
TGGCATCTTGTAAATAAAGG+TGG - chr7.1:3724948-3724967 MS.gene050945:intron 35.0%
TGTTGTTATCATTCTGCAGT+TGG - chr7.1:3723488-3723507 MS.gene050945:CDS 35.0%
TTAAAGTTGAATCCACCAGA+AGG + chr7.1:3726934-3726953 None:intergenic 35.0%
TTGTGACAGTTTGTCTTGAA+GGG - chr7.1:3726647-3726666 MS.gene050945:intron 35.0%
TTGTTAATGAAGTTAACCGG+AGG - chr7.1:3724111-3724130 MS.gene050945:CDS 35.0%
! ACAAAGGCACAAATTGCATA+TGG + chr7.1:3724029-3724048 None:intergenic 35.0%
! TTTCGGAAGTTGCTTTCAAT+TGG - chr7.1:3723582-3723601 MS.gene050945:intron 35.0%
!! GTATGCTGTTTCTAGATTCT+AGG - chr7.1:3724189-3724208 MS.gene050945:intron 35.0%
!! TTTCAACATACAAGGTGTTG+AGG + chr7.1:3724845-3724864 None:intergenic 35.0%
!!! TTTTGAAGCAAGTTGACCAA+AGG + chr7.1:3726380-3726399 None:intergenic 35.0%
AACAGCCTCTTGTGTATAAC+AGG - chr7.1:3725055-3725074 MS.gene050945:intron 40.0%
AACATCTTTCCTGTGTTGTG+TGG - chr7.1:3724379-3724398 MS.gene050945:CDS 40.0%
AAGAAAGCTTGCAGAAGAAG+AGG - chr7.1:3722876-3722895 MS.gene050945:CDS 40.0%
AAGACTGGTAAAACCAAGGA+TGG + chr7.1:3725196-3725215 None:intergenic 40.0%
AAGATAATAACCTGCAGCTG+TGG + chr7.1:3723781-3723800 None:intergenic 40.0%
AAGCCCATTTGTGTACCAAA+TGG + chr7.1:3724690-3724709 None:intergenic 40.0%
ACAATTTCGAACATCACAGC+TGG - chr7.1:3726220-3726239 MS.gene050945:intron 40.0%
ACAGCCTCTTGTGTATAACA+GGG - chr7.1:3725056-3725075 MS.gene050945:intron 40.0%
ACATGTGAGTAGATCACACA+AGG + chr7.1:3726614-3726633 None:intergenic 40.0%
ACATTGCCTTGCAATAGTGT+TGG - chr7.1:3724323-3724342 MS.gene050945:CDS 40.0%
ACCTTGTAGCTACATACAGA+TGG + chr7.1:3723424-3723443 None:intergenic 40.0%
ACTAAGGTAGTAATTGAGGC+AGG - chr7.1:3723927-3723946 MS.gene050945:intron 40.0%
AGAAACTGTGAAGGAGATAG+TGG + chr7.1:3725922-3725941 None:intergenic 40.0%
AGACAAACTGTCACAATCCT+AGG + chr7.1:3726643-3726662 None:intergenic 40.0%
AGGATAACTTGGTTGAGATC+CGG - chr7.1:3722840-3722859 MS.gene050945:CDS 40.0%
AGTCAAGCTAAACATTCCTC+CGG + chr7.1:3724130-3724149 None:intergenic 40.0%
ATCAAGCACATGATTCGTGA+TGG + chr7.1:3726060-3726079 None:intergenic 40.0%
ATTCAAGGCGTAATTGAAGC+TGG - chr7.1:3725414-3725433 MS.gene050945:intron 40.0%
ATTGAGGAGGTTATACAAGC+TGG - chr7.1:3723712-3723731 MS.gene050945:intron 40.0%
CAATTTCGAACATCACAGCT+GGG - chr7.1:3726221-3726240 MS.gene050945:intron 40.0%
CACTATTATGCATGCAAGTG+AGG - chr7.1:3724227-3724246 MS.gene050945:intron 40.0%
CATGTGAGTAGATCACACAA+GGG + chr7.1:3726613-3726632 None:intergenic 40.0%
CCTTGTAGCTACATACAGAT+GGG + chr7.1:3723423-3723442 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr7.1:3725087-3725106 MS.gene050945:intron 40.0%
CTAATTGTTAGCTCCATCCT+TGG - chr7.1:3725180-3725199 MS.gene050945:CDS 40.0%
GAAACTGTGAAGGAGATAGT+GGG + chr7.1:3725921-3725940 None:intergenic 40.0%
GAATAAGCACAGAAGGAGAT+GGG + chr7.1:3725566-3725585 None:intergenic 40.0%
GACCAAAGGACCAATTATAC+TGG + chr7.1:3726366-3726385 None:intergenic 40.0%
GCAAGGAGCTTCACAAAAAT+TGG + chr7.1:3723960-3723979 None:intergenic 40.0%
GCAATCTCAAATGCTACATC+GGG - chr7.1:3726434-3726453 MS.gene050945:intron 40.0%
GCAGCTATGTTGTTCTTTAG+TGG - chr7.1:3724928-3724947 MS.gene050945:intron 40.0%
GCTTGTATAACCTCCTCAAT+CGG + chr7.1:3723712-3723731 None:intergenic 40.0%
GGCAATCTCAAATGCTACAT+CGG - chr7.1:3726433-3726452 MS.gene050945:intron 40.0%
TAAGAGAAGGAAGAACTCGA+TGG + chr7.1:3726147-3726166 None:intergenic 40.0%
TCATAAGGAGGAAAGAGACA+TGG + chr7.1:3726011-3726030 None:intergenic 40.0%
TCTCAATCAGGGTTCAACTT+TGG - chr7.1:3726886-3726905 MS.gene050945:CDS 40.0%
TGAAGATTCTCGAGACATAC+TGG - chr7.1:3726824-3726843 MS.gene050945:CDS 40.0%
TGCCAGTATAATTGGTCCTT+TGG - chr7.1:3726361-3726380 MS.gene050945:intron 40.0%
TGTGTTGTCATGTGACTGAA+AGG - chr7.1:3725012-3725031 MS.gene050945:intron 40.0%
TGTTCACGAACATCATCACT+AGG + chr7.1:3723987-3724006 None:intergenic 40.0%
TTGAGGCAACAACTCAGTTT+CGG - chr7.1:3723565-3723584 MS.gene050945:intron 40.0%
TTTCAGTCACATGACAACAC+AGG + chr7.1:3725013-3725032 None:intergenic 40.0%
! ACAGATTCAGGTTTGTGCAT+TGG - chr7.1:3726252-3726271 MS.gene050945:intron 40.0%
! CAGATTCAGGTTTGTGCATT+GGG - chr7.1:3726253-3726272 MS.gene050945:intron 40.0%
! CTGTTCAAAGTTGTTTCCCT+TGG - chr7.1:3725493-3725512 MS.gene050945:intron 40.0%
! TAGTGATGATGTTCGTGAAC+AGG - chr7.1:3723986-3724005 MS.gene050945:intron 40.0%
!! AAGATATGAAAGTGCCCAAC+AGG + chr7.1:3725373-3725392 None:intergenic 40.0%
AAAAATGCCGGCATCACTGA+TGG - chr7.1:3726703-3726722 MS.gene050945:intron 45.0%
AAAATTGGTCGACAGGTACC+TGG - chr7.1:3726567-3726586 MS.gene050945:intron 45.0%
AACATTTCCCAATGCCCACA+CGG + chr7.1:3724414-3724433 None:intergenic 45.0%
AAGTCTTGACTGATGCCTGT+TGG - chr7.1:3725355-3725374 MS.gene050945:intron 45.0%
ACACTCTCAAACTTCTGCAG+GGG - chr7.1:3724548-3724567 MS.gene050945:intron 45.0%
ACAGGTACCTGGTAAGTCAA+GGG - chr7.1:3726578-3726597 MS.gene050945:intron 45.0%
ACAGTAGAAGCTCAACAAGC+CGG + chr7.1:3725449-3725468 None:intergenic 45.0%
ACATGGCTGCAAGATATGAG+AGG + chr7.1:3725968-3725987 None:intergenic 45.0%
ACCTGATCAAAAGCAGGTTG+TGG + chr7.1:3724578-3724597 None:intergenic 45.0%
ACTGTCACAATCCTAGGATC+AGG + chr7.1:3726637-3726656 None:intergenic 45.0%
AGAACAAGATCACGGCATCT+AGG + chr7.1:3724449-3724468 None:intergenic 45.0%
AGAGCAGGAATAAGCACAGA+AGG + chr7.1:3725573-3725592 None:intergenic 45.0%
AGATGCCGTGATCTTGTTCT+CGG - chr7.1:3724449-3724468 MS.gene050945:intron 45.0%
AGCATGAAAAAGGGACAACC+CGG + chr7.1:3725153-3725172 None:intergenic 45.0%
AGCTCTGCGAGCATGAAAAA+GGG + chr7.1:3725162-3725181 None:intergenic 45.0%
AGTCCAGATTCCTGTAACCA+AGG + chr7.1:3723526-3723545 None:intergenic 45.0%
AGTCTTGACTGATGCCTGTT+GGG - chr7.1:3725356-3725375 MS.gene050945:intron 45.0%
ATATCAAGAAGGAAGCAGCC+TGG - chr7.1:3726411-3726430 MS.gene050945:intron 45.0%
ATCTCAAATGCTACATCGGG+TGG - chr7.1:3726437-3726456 MS.gene050945:intron 45.0%
CAATCAGGGTTCAACTTTGG+TGG - chr7.1:3726889-3726908 MS.gene050945:CDS 45.0%
CAGGTGATGCTTCTCAATCA+GGG - chr7.1:3726875-3726894 MS.gene050945:CDS 45.0%
CATCATCACTAGGAGAAGCA+AGG + chr7.1:3723977-3723996 None:intergenic 45.0%
CATGACCGAGAACAAGATCA+CGG + chr7.1:3724457-3724476 None:intergenic 45.0%
CCCATCTGTATGTAGCTACA+AGG - chr7.1:3723420-3723439 MS.gene050945:intron 45.0%
CTCTTGTGTATAACAGGGCA+AGG - chr7.1:3725061-3725080 MS.gene050945:intron 45.0%
CTTGCCCTGTTATACACAAG+AGG + chr7.1:3725063-3725082 None:intergenic 45.0%
GACACTCTCAAACTTCTGCA+GGG - chr7.1:3724547-3724566 MS.gene050945:intron 45.0%
GATGGTCCAACACTATTGCA+AGG + chr7.1:3724332-3724351 None:intergenic 45.0%
GATTCTCGAGACATACTGGT+TGG - chr7.1:3726828-3726847 MS.gene050945:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr7.1:3725086-3725105 MS.gene050945:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr7.1:3725083-3725102 MS.gene050945:intron 45.0%
GGAATAAGCACAGAAGGAGA+TGG + chr7.1:3725567-3725586 None:intergenic 45.0%
GGGGAAGCTGATAAAAATGC+CGG - chr7.1:3726691-3726710 MS.gene050945:intron 45.0%
GTATAACCTCCTCAATCGGT+GGG + chr7.1:3723708-3723727 None:intergenic 45.0%
TAATGCACCCTTGACTTACC+AGG + chr7.1:3726588-3726607 None:intergenic 45.0%
TACTCACATGTCCTGATCCT+AGG - chr7.1:3726623-3726642 MS.gene050945:intron 45.0%
TATCAAGAAGGAAGCAGCCT+GGG - chr7.1:3726412-3726431 MS.gene050945:intron 45.0%
TCATTCAATTGCGCCAACAG+AGG + chr7.1:3724491-3724510 None:intergenic 45.0%
TCTCAGTGTTGTCATGACTC+TGG + chr7.1:3726789-3726808 None:intergenic 45.0%
TGCAGGTTTAACCTGTAAGC+AGG + chr7.1:3725295-3725314 None:intergenic 45.0%
TGGGAACAAGCAACAGATTC+AGG - chr7.1:3726240-3726259 MS.gene050945:intron 45.0%
TGGTAGCTTAAGAACTGAGC+CGG + chr7.1:3725865-3725884 None:intergenic 45.0%
TGGTTGAGATCCGGAAGAAT+CGG - chr7.1:3722849-3722868 MS.gene050945:CDS 45.0%
TGTATAACCTCCTCAATCGG+TGG + chr7.1:3723709-3723728 None:intergenic 45.0%
TTTCTTCCCTCCGATTCTTC+CGG + chr7.1:3722862-3722881 None:intergenic 45.0%
! AACTAGCAGAGCTGATTCAC+CGG - chr7.1:3725843-3725862 MS.gene050945:intron 45.0%
! ATACACAAGAGGCTGTTTCC+AGG + chr7.1:3725052-3725071 None:intergenic 45.0%
! ATGTTCCCCGGTGATTTTGT+TGG - chr7.1:3726503-3726522 MS.gene050945:intron 45.0%
! GCTTGTTGAGCTTCTACTGT+GGG - chr7.1:3725449-3725468 MS.gene050945:intron 45.0%
! GTAGGGGTGTGCATAAAAAC+TGG + chr7.1:3723280-3723299 None:intergenic 45.0%
! GTTGTAGTTTGAGGCAGCAT+GGG - chr7.1:3723869-3723888 MS.gene050945:intron 45.0%
! TAGCTCTGCGAGCATGAAAA+AGG + chr7.1:3725163-3725182 None:intergenic 45.0%
! TGTAGCATTTGAGATTGCCC+AGG + chr7.1:3726432-3726451 None:intergenic 45.0%
! TGTTGTAGTTTGAGGCAGCA+TGG - chr7.1:3723868-3723887 MS.gene050945:intron 45.0%
!! GAAGTTTGAGAGTGTCCATG+TGG + chr7.1:3724543-3724562 None:intergenic 45.0%
!! GTGAAGGAGATAGTGGGAAA+TGG + chr7.1:3725915-3725934 None:intergenic 45.0%
!! GTGTTAATGGGGTGCTTTTC+TGG - chr7.1:3726106-3726125 MS.gene050945:CDS 45.0%
AAGGTCACGTGTTCAAGTCC+TGG - chr7.1:3725031-3725050 MS.gene050945:intron 50.0%
ATTCACGCCATCAGTGATGC+CGG + chr7.1:3726713-3726732 None:intergenic 50.0%
ATTCCTGCTCTACGCACAGT+TGG - chr7.1:3725582-3725601 MS.gene050945:intron 50.0%
CAGATTCCTGTAACCAAGGC+TGG + chr7.1:3723522-3723541 None:intergenic 50.0%
CAGCCTTGGTTACAGGAATC+TGG - chr7.1:3723520-3723539 MS.gene050945:CDS 50.0%
CAGTGTTGTCATGACTCTGG+AGG + chr7.1:3726786-3726805 None:intergenic 50.0%
CCAGGTGATGCTTCTCAATC+AGG - chr7.1:3726874-3726893 MS.gene050945:CDS 50.0%
CGTGATCTTGTTCTCGGTCA+TGG - chr7.1:3724455-3724474 MS.gene050945:intron 50.0%
CTATGCTCAGAAACGCCACA+TGG - chr7.1:3724525-3724544 MS.gene050945:intron 50.0%
GACAGGTACCTGGTAAGTCA+AGG - chr7.1:3726577-3726596 MS.gene050945:intron 50.0%
GAGACGGAGAGAGGATAACT+TGG - chr7.1:3722829-3722848 MS.gene050945:CDS 50.0%
GATTGACGAAGCTGAGGGTT+TGG - chr7.1:3726747-3726766 MS.gene050945:CDS 50.0%
GCATCAAGAAGGAAGCTTGC+TGG - chr7.1:3726197-3726216 MS.gene050945:intron 50.0%
GCATGGAGGAAATCGTCTGT+AGG - chr7.1:3725764-3725783 MS.gene050945:CDS 50.0%
GGACACTCTCAAACTTCTGC+AGG - chr7.1:3724546-3724565 MS.gene050945:intron 50.0%
GGACGGCATAGAAACTGTGA+AGG + chr7.1:3725931-3725950 None:intergenic 50.0%
GGTTCGTCGGAATCGATACA+AGG - chr7.1:3722781-3722800 MS.gene050945:CDS 50.0%
GGTTTAACCTGTAAGCAGGC+AGG + chr7.1:3725291-3725310 None:intergenic 50.0%
GTTGAATCCACCAGAAGGCA+CGG + chr7.1:3726929-3726948 None:intergenic 50.0%
TAACCTGTAAGCAGGCAGGA+TGG + chr7.1:3725287-3725306 None:intergenic 50.0%
TAAGCACAGAAGGAGATGGG+TGG + chr7.1:3725563-3725582 None:intergenic 50.0%
TCGGAATCGATACAAGGTGG+CGG - chr7.1:3722787-3722806 MS.gene050945:CDS 50.0%
TCGTCGGAATCGATACAAGG+TGG - chr7.1:3722784-3722803 MS.gene050945:CDS 50.0%
TGAGATCCGGAAGAATCGGA+GGG - chr7.1:3722853-3722872 MS.gene050945:CDS 50.0%
TGGAGCTTTGCTTCCTCTGT+TGG - chr7.1:3724475-3724494 MS.gene050945:intron 50.0%
TTCCTGTAACCAAGGCTGGT+AGG + chr7.1:3723518-3723537 None:intergenic 50.0%
TTGAAGCTGGTGTCTGTAGC+CGG - chr7.1:3725427-3725446 MS.gene050945:intron 50.0%
TTGAGATCCGGAAGAATCGG+AGG - chr7.1:3722852-3722871 MS.gene050945:CDS 50.0%
TTTCCAACTGTGCGTAGAGC+AGG + chr7.1:3725588-3725607 None:intergenic 50.0%
! ATACAAGGTGGCGGTTGATG+CGG - chr7.1:3722796-3722815 MS.gene050945:CDS 50.0%
! GCATCACTGATGGCGTGAAT+CGG - chr7.1:3726713-3726732 MS.gene050945:intron 50.0%
! GGAAGATTTTCCACAGCTGC+AGG - chr7.1:3723768-3723787 MS.gene050945:intron 50.0%
! TCTCGAGACATACTGGTTGG+AGG - chr7.1:3726831-3726850 MS.gene050945:CDS 50.0%
! TGGAGATGACTTGCAGACAC+AGG - chr7.1:3725617-3725636 MS.gene050945:intron 50.0%
! TTGCAGAAGAAGAGGCGTGA+AGG - chr7.1:3722884-3722903 MS.gene050945:CDS 50.0%
!! CCTGATTGAGAAGCATCACC+TGG + chr7.1:3726877-3726896 None:intergenic 50.0%
!! CTCGATGGTTGATGATGACC+TGG + chr7.1:3726132-3726151 None:intergenic 50.0%
!! GATTGAGAAGCATCACCTGG+AGG + chr7.1:3726874-3726893 None:intergenic 50.0%
!! GCCACAACCTGCTTTTGATC+AGG - chr7.1:3724574-3724593 MS.gene050945:intron 50.0%
!! GGCTTGTTGAGCTTCTACTG+TGG - chr7.1:3725448-3725467 MS.gene050945:intron 50.0%
!! GTATCGATTCCGACGAACCT+CGG + chr7.1:3722780-3722799 None:intergenic 50.0%
!! TGGGCATTGGGAAATGTTGC+TGG - chr7.1:3724416-3724435 MS.gene050945:intron 50.0%
ACTGATGCAGGCATCTGCTG+AGG + chr7.1:3722917-3722936 None:intergenic 55.0%
ACTTGAGCTCCCGCATATGC+AGG + chr7.1:3725127-3725146 None:intergenic 55.0%
ATGCGGAAGAAGGTCGGAGA+CGG - chr7.1:3722813-3722832 MS.gene050945:CDS 55.0%
CACCTACCAGCCTTGGTTAC+AGG - chr7.1:3723513-3723532 MS.gene050945:CDS 55.0%
CCTGACAGTCCACACAACAC+AGG + chr7.1:3724391-3724410 None:intergenic 55.0%
CTACCATCCTGCCTGCTTAC+AGG - chr7.1:3725281-3725300 MS.gene050945:intron 55.0%
CTGGTTGGAGGAAGATGACG+AGG - chr7.1:3726843-3726862 MS.gene050945:CDS 55.0%
CTTGAGCTCCCGCATATGCA+GGG + chr7.1:3725126-3725145 None:intergenic 55.0%
GTTGGAACACCTACCAGCCT+TGG - chr7.1:3723506-3723525 MS.gene050945:CDS 55.0%
TAACGCAAACGCGAGAACCG+AGG - chr7.1:3722760-3722779 MS.gene050945:CDS 55.0%
TCGGTTCTCGCGTTTGCGTT+AGG + chr7.1:3722761-3722780 None:intergenic 55.0%
TGGATGAGACTGGCAAGTGC+AGG + chr7.1:3725321-3725340 None:intergenic 55.0%
! AGAACGTAGCCCACCGATTG+AGG - chr7.1:3723696-3723715 MS.gene050945:intron 55.0%
! AGAAGGCACGGCAGGAACAT+CGG + chr7.1:3726917-3726936 None:intergenic 55.0%
! CCTGTGTTGTGTGGACTGTC+AGG - chr7.1:3724388-3724407 MS.gene050945:intron 55.0%
! CGGTTGATGCGGAAGAAGGT+CGG - chr7.1:3722807-3722826 MS.gene050945:CDS 55.0%
!! AATGGGGTGCTTTTCTGGCC+AGG - chr7.1:3726111-3726130 MS.gene050945:CDS 55.0%
!! TCAATCGGTGGGCTACGTTC+TGG + chr7.1:3723697-3723716 None:intergenic 55.0%
ACGCGAGAACCGAGGTTCGT+CGG - chr7.1:3722768-3722787 MS.gene050945:CDS 60.0%
AGAAGGTCGGAGACGGAGAG+AGG - chr7.1:3722820-3722839 MS.gene050945:CDS 60.0%
ATGCGGGAGCTCAAGTGCAC+CGG - chr7.1:3725131-3725150 MS.gene050945:CDS 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr7.1:3725114-3725133 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr7.1:3725114-3725133 MS.gene050945:CDS 60.0%
GATGACGAGGCTATGCCTCC+AGG - chr7.1:3726856-3726875 MS.gene050945:CDS 60.0%
GATGTTCCTGCCGTGCCTTC+TGG - chr7.1:3726916-3726935 MS.gene050945:CDS 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr7.1:3725115-3725134 None:intergenic 60.0%
TGTCAGGCCGTGTGGGCATT+GGG - chr7.1:3724404-3724423 MS.gene050945:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr7.1:3725115-3725134 MS.gene050945:CDS 60.0%
! AATCCACCAGAAGGCACGGC+AGG + chr7.1:3726925-3726944 None:intergenic 60.0%
! ACGTAGCCCACCGATTGAGG+AGG - chr7.1:3723699-3723718 MS.gene050945:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr7.1:3725099-3725118 MS.gene050945:intron 60.0%
! CTGGCAAGTGCAGGAAGTGC+AGG + chr7.1:3725312-3725331 None:intergenic 60.0%
! GTGGCGGTTGATGCGGAAGA+AGG - chr7.1:3722803-3722822 MS.gene050945:CDS 60.0%
! TGTGGACTGTCAGGCCGTGT+GGG - chr7.1:3724397-3724416 MS.gene050945:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG + chr7.1:3725116-3725135 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr7.1:3725101-3725120 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr7.1:3725120-3725139 None:intergenic 65.0%
CTGTCAGGCCGTGTGGGCAT+TGG - chr7.1:3724403-3724422 MS.gene050945:intron 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr7.1:3725121-3725140 None:intergenic 65.0%
GTTCCTGCCGTGCCTTCTGG+TGG - chr7.1:3726919-3726938 MS.gene050945:CDS 65.0%
TGCGGGAGCTCAAGTGCACC+GGG - chr7.1:3725132-3725151 MS.gene050945:CDS 65.0%
! GTGTGGACTGTCAGGCCGTG+TGG - chr7.1:3724396-3724415 MS.gene050945:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 3722746 3726957 3722746 ID=MS.gene050945
chr7.1 mRNA 3722746 3726957 3722746 ID=MS.gene050945.t1;Parent=MS.gene050945
chr7.1 exon 3726742 3726957 3726742 ID=MS.gene050945.t1.exon1;Parent=MS.gene050945.t1
chr7.1 CDS 3726742 3726957 3726742 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3726100 3726196 3726100 ID=MS.gene050945.t1.exon2;Parent=MS.gene050945.t1
chr7.1 CDS 3726100 3726196 3726100 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3725914 3726005 3725914 ID=MS.gene050945.t1.exon3;Parent=MS.gene050945.t1
chr7.1 CDS 3725914 3726005 3725914 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3725696 3725827 3725696 ID=MS.gene050945.t1.exon4;Parent=MS.gene050945.t1
chr7.1 CDS 3725696 3725827 3725696 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3725108 3725293 3725108 ID=MS.gene050945.t1.exon5;Parent=MS.gene050945.t1
chr7.1 CDS 3725108 3725293 3725108 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3724237 3724400 3724237 ID=MS.gene050945.t1.exon6;Parent=MS.gene050945.t1
chr7.1 CDS 3724237 3724400 3724237 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3724065 3724143 3724065 ID=MS.gene050945.t1.exon7;Parent=MS.gene050945.t1
chr7.1 CDS 3724065 3724143 3724065 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3723442 3723570 3723442 ID=MS.gene050945.t1.exon8;Parent=MS.gene050945.t1
chr7.1 CDS 3723442 3723570 3723442 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3723226 3723353 3723226 ID=MS.gene050945.t1.exon9;Parent=MS.gene050945.t1
chr7.1 CDS 3723226 3723353 3723226 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
chr7.1 exon 3722746 3723121 3722746 ID=MS.gene050945.t1.exon10;Parent=MS.gene050945.t1
chr7.1 CDS 3722746 3723121 3722746 ID=cds.MS.gene050945.t1;Parent=MS.gene050945.t1
Gene Sequence

>MS.gene050945

ATGTCGTATCGTCCTAACGCAAACGCGAGAACCGAGGTTCGTCGGAATCGATACAAGGTGGCGGTTGATGCGGAAGAAGGTCGGAGACGGAGAGAGGATAACTTGGTTGAGATCCGGAAGAATCGGAGGGAAGAAAGCTTGCAGAAGAAGAGGCGTGAAGGACTTCAACCTCAGCAGATGCCTGCATCAGTTCAATCTAATCTACTCGAGAAAAAGGTTAAGATTCTCTTGATCTCACTACTTTACTTGTTCTTTCCGATTTTCTACTTTACTACGTTGGATAAGTTATTTATTAGGTTAATTGAGAAATTGATAATACTGGATTAGGTTAATTGCAATATATTGATAGTAGCGATTAGGTTAATTGAGAAATTGATACTGCTGGATTAGGTTAATTGCAATATTGATAGTAGTGATTAGTTTAATTGCAAAATTGATGATAGTAATTAGGTTAATTTTCCTGTTTATGTTGTTTTGATTCATTTGAATATTATTATTATTATTATTATTATAACTCATGGTTCTTGTGATCCAGTTTTTATGCACACCCCTACTTGTTATGCTTCATTTGAGATTTAGCAGTGTTTGTTAATTTTAAGGGTTATAATATGATTATTATTATGATTCAAACATGTTCATGATATTCACTGGTTATATGCTGTGACTGTGTCTTTCCCATCTGTATGTAGCTACAAGGTTTGATTAATATTATGGTAGGTTATGAACTTGAAGTTTACTGAATTGTTGTTATCATTCTGCAGTTGGAACACCTACCAGCCTTGGTTACAGGAATCTGGACTGATGATAATAACATGCAGTTTGAGGCAACAACTCAGTTTCGGAAGTTGCTTTCAATTGGTTAGATATTGTTCTACGTAACTTTATTTTCATTCATTTTTTTGTATACAATTTTTTAAGGGACATTTGGTTAACAACTTTTATGTCTTACCAGAACGTAGCCCACCGATTGAGGAGGTTATACAAGCTGGTGTAGTTCCTCGTTTTATTGAGTTCTTGATGAGGGAAGATTTTCCACAGCTGCAGGTTATTATCTTCCTTGTTTTATTTTATGCAATAGATATTTATATTTATTTGTACATTGCACTGATTTTGTTTACTGTATGTTGTAGTTTGAGGCAGCATGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTAGTAATTGAGGCAGGTGCTGTACCAATTTTTGTGAAGCTCCTTGCTTCTCCTAGTGATGATGTTCGTGAACAGGTATGTTTACTTTATATACCATATGCAATTTGTGCCTTTGTTTTTGCCTATCAGTAAAATTTATATGGTTTCTTACTTTTTATTGGGAGACACCCTTCTTTTTTTGTTAATGAAGTTAACCGGAGGAATGTTTAGCTTGACTAGACAACTTACTTGTTCACTTTGATTTTAGATTTGGTTTGTATGCTGTTTCTAGATTCTAGGTGTGATGTTTGCATGCACTATTATGCATGCAAGTGAGGTTGAGCTAAATGCATTTGCTTTGAGTTTATTTTTTTCTTTAACTTGTTGCTGAAGCTATGCACAAAAATGACGACATTGCCTTGCAATAGTGTTGGACCATCTAGTGTGATCTATCTCATCTGAAGTTTAACATCTTTCCTGTGTTGTGTGGACTGTCAGGCCGTGTGGGCATTGGGAAATGTTGCTGGAGATTCACCTAGATGCCGTGATCTTGTTCTCGGTCATGGAGCTTTGCTTCCTCTGTTGGCGCAATTGAATGAGCATGCCAAACTTTCTATGCTCAGAAACGCCACATGGACACTCTCAAACTTCTGCAGGGGAAAGCCACAACCTGCTTTTGATCAGGTATAAAGTTATGCATAATATTTCTAAAATAAGATTCATTACTTACACACAGATGAGTAATTACAAGGCTCTATATACACAAGTATAAAGTCCATTTGGTACACAAATGGGCTTATATATGCACGATACCTAGAACTTGAACAAGAAATTTTGGCACCTTTAATATTTGTTTATATCTGCTATTGTGAAATGAATTTTTTTTACTTGCTCCATTTGTTTGAATTTTCTTATTGCTATGTCTGCTTTCCTCAACACCTTGTATGTTGAAAAATTATCAAATTGCTTAATCTATGCTATAGTTTATATTGAAAAATTATGGTATTGCAGTGTGTGCAGCTATGTTGTTCTTTAGTGGCATCTTGTAAATAAAGGTGGTCAAATTTGTGGTTTGTATGTGAAGGCCATATTATTTAACCTGTGTTGTCATGTGACTGAAAGGTCACGTGTTCAAGTCCTGGAAACAGCCTCTTGTGTATAACAGGGCAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTCAAGTGCACCGGGTTGTCCCTTTTTCATGCTCGCAGAGCTAATTGTTAGCTCCATCCTTGGTTTTACCAGTCTTTTTGTTTTGCTGACTCTACTATTTGAATGAGTAATAATTGATTCTTAATATCAGAGTTTATAACTCTACCATCCTGCCTGCTTACAGGTTAAACCTGCACTTCCTGCACTTGCCAGTCTCATCCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTGCAAATGACAAAATTCAAGGCGTAATTGAAGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTACTGTGGGTATTCTGAATATCAAATTTAGCTGTTCAAAGTTGTTTCCCTTGGTTATTATGATGTGAAATTCTAATTATTATTTTGGTTTTGTTCAGCCACCCATCTCCTTCTGTGCTTATTCCTGCTCTACGCACAGTTGGAAATATTGTCACTGGAGATGACTTGCAGACACAGGTATTAAGTTCAAGAGTTTATTCTTTCATCTCTTATATACAGTAGTTAATTCTGCGATTTTGCACTAAGAGAAATAGTAATACACACTGGAGCTAGTGATTTAAGTTCTGAAATTAAAATTAAACGCATGGAGGAAATCGTCTGTAGGAAAAAACTGTTACACAAGTATATGAAATTCAGAAAATGCAGAAGTAGCAAGAGATAAACTAGCAGAGCTGATTCACCGGCTCAGTTCTTAAGCTACCAATTTCCTCATTATAATTCGCTTTGTCACCATTTCCCACTATCTCCTTCACAGTTTCTATGCCGTCCAATTGCACAAATTTCCTCTCATATCTTGCAGCCATGTGTATATTCTGTTGCACTCTTCCATGTCTCTTTCCTCCTTATGATTAGCAGCAATAGAATTGATATAATGCCATCACGAATCATGTGCTTGATTATTATTTTACTTTTGATTTTGGTTTGTGTTAATGGGGTGCTTTTCTGGCCAGGTCATCATCAACCATCGAGTTCTTCCTTCTCTTAAGAACCTCTTGATTAATAGTTATAAAAAAAGCATCAAGAAGGAAGCTTGCTGGACAATTTCGAACATCACAGCTGGGAACAAGCAACAGATTCAGGTTTGTGCATTGGGATAATTAAAATCTGTGTTATCTTTGCATTTGGAGTACTTAATTTATATTTCTCTTGATTCTTGAAAATTTACAGGATGTGATTGATGCCAGTATAATTGGTCCTTTGGTCAACTTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCAGCCTGGGCAATCTCAAATGCTACATCGGGTGGATCTCATGAACAACTCAAGTATGGAGAGATCCTTAAATTTACAATGTTCCCCGGTGATTTTGTTGGTTTTATAGCATTTTTTTTTTCCGAGATGTCATAATCTTTTTAAAATTGGTCGACAGGTACCTGGTAAGTCAAGGGTGCATTAAGCCCTTGTGTGATCTACTCACATGTCCTGATCCTAGGATTGTGACAGTTTGTCTTGAAGGGCTTGAAAACATCTTAAAGGTAGGGGAAGCTGATAAAAATGCCGGCATCACTGATGGCGTGAATCGGTATGCTGAAATGATTGACGAAGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACTGAGATTTATGAAAAGGCTGTGAAGATTCTCGAGACATACTGGTTGGAGGAAGATGACGAGGCTATGCCTCCAGGTGATGCTTCTCAATCAGGGTTCAACTTTGGTGGCTCCGATGTTCCTGCCGTGCCTTCTGGTGGATTCAACTTTAACTAG

Protein sequence

>MS.gene050945.t1

MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQPQQMPASVQSNLLEKKLEHLPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIEAGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGANDKIQGVIEAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQVIINHRVLPSLKNLLINSYKKSIKKEACWTISNITAGNKQQIQDVIDASIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLTCPDPRIVTVCLEGLENILKVGEADKNAGITDGVNRYAEMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDEAMPPGDASQSGFNFGGSDVPAVPSGGFNFN