Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63826.t1 | XP_003630286.1 | 91.7 | 396 | 22 | 5 | 1 | 391 | 1 | 390 | 1.30E-196 | 695.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63826.t1 | P52424 | 77.9 | 394 | 76 | 5 | 1 | 390 | 1 | 387 | 7.3e-169 | 594.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63826.t1 | B7FJ14 | 91.7 | 396 | 22 | 5 | 1 | 391 | 1 | 390 | 9.1e-197 | 695.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054662 | MS.gene63826 | 0.817527 | 3.15E-52 | -1.69E-46 |
| MS.gene057165 | MS.gene63826 | 0.814868 | 1.24E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63826.t1 | MTR_8g093860 | 91.919 | 396 | 21 | 5 | 1 | 391 | 1 | 390 | 0.0 | 685 |
| MS.gene63826.t1 | MTR_8g093860 | 83.333 | 396 | 21 | 6 | 1 | 391 | 1 | 356 | 0.0 | 598 |
| MS.gene63826.t1 | MTR_5g093890 | 88.596 | 114 | 13 | 0 | 278 | 391 | 109 | 222 | 4.02e-68 | 215 |
| MS.gene63826.t1 | MTR_5g093890 | 61.350 | 163 | 16 | 4 | 44 | 201 | 1 | 121 | 1.56e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63826.t1 | AT3G55010 | 70.419 | 382 | 97 | 4 | 10 | 390 | 22 | 388 | 0.0 | 514 |
| MS.gene63826.t1 | AT3G55010 | 70.419 | 382 | 97 | 4 | 10 | 390 | 22 | 388 | 0.0 | 514 |
Find 94 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTTGCAGAAGCTTTAA+TGG | 0.186823 | 5.3:+76172072 | MS.gene63826:CDS |
| TCTCTTCTTCAGGTTATAAA+AGG | 0.219818 | 5.3:+76170975 | MS.gene63826:intron |
| GTTGCTGTTAAAGCTGAATT+AGG | 0.262432 | 5.3:+76169776 | MS.gene63826:CDS |
| GTGATTGTAGCGGTGCCTTT+AGG | 0.290401 | 5.3:-76169659 | None:intergenic |
| CTGGCATTCATGACACTATT+GGG | 0.307297 | 5.3:+76170684 | MS.gene63826:CDS |
| GTCAATGACATTGTTACTTC+GGG | 0.311408 | 5.3:+76170810 | MS.gene63826:CDS |
| ATAGAAGCACCAAAACCTTC+TGG | 0.347224 | 5.3:-76172299 | None:intergenic |
| ACTGGCATTCATGACACTAT+TGG | 0.351495 | 5.3:+76170683 | MS.gene63826:CDS |
| TGTTTAACATAGATCTTAGT+TGG | 0.359529 | 5.3:-76172097 | None:intergenic |
| GTGATGCTTGCCTTTGAAAC+TGG | 0.364727 | 5.3:+76170665 | MS.gene63826:CDS |
| AAGGGAATTGCCCATGTTAC+TGG | 0.367961 | 5.3:+76172242 | MS.gene63826:CDS |
| ACCAATCCCGGGAGCCATCT+TGG | 0.375081 | 5.3:-76169867 | None:intergenic |
| GTTATAAAAGGAATTGTTGA+TGG | 0.376433 | 5.3:+76170987 | MS.gene63826:CDS |
| AACTAAGATCTATGTTAAAC+AGG | 0.388871 | 5.3:+76172099 | MS.gene63826:CDS |
| TCAAGTGGAGTTCACTCTAA+TGG | 0.393600 | 5.3:+76171901 | MS.gene63826:CDS |
| TTAGAGTGAACTCCACTTGA+TGG | 0.400231 | 5.3:-76171898 | None:intergenic |
| TTCAACAAAGCAATGAGTTT+CGG | 0.405513 | 5.3:+76169590 | None:intergenic |
| GCTCCCGGGATTGGTGGCTT+CGG | 0.417133 | 5.3:+76169875 | MS.gene63826:CDS |
| ACCGCGGGCGACATTCTTAT+CGG | 0.417757 | 5.3:+76171871 | MS.gene63826:CDS |
| GGTGATTCATATCTCGTTGC+TGG | 0.425062 | 5.3:+76170620 | MS.gene63826:intron |
| CAATCTGATTGTGCTCTTCT+CGG | 0.426140 | 5.3:+76171017 | MS.gene63826:CDS |
| ATCTTAGTGGTTGTGCGGTT+GGG | 0.428572 | 5.3:+76171809 | MS.gene63826:CDS |
| TGATGTGGATGTTGCTGAAC+AGG | 0.430758 | 5.3:+76170878 | MS.gene63826:CDS |
| TTCCTAGATTACTTTGCTAC+TGG | 0.434841 | 5.3:+76170849 | MS.gene63826:CDS |
| CCCGGGATTGGTGGCTTCGG+TGG | 0.435733 | 5.3:+76169878 | MS.gene63826:CDS |
| AGTATTCTATTAGCTGCCTC+TGG | 0.440480 | 5.3:-76172557 | None:intergenic |
| ACCACCGAAGCCACCAATCC+CGG | 0.448332 | 5.3:-76169879 | None:intergenic |
| GCCAAGATGGCTCCCGGGAT+TGG | 0.453678 | 5.3:+76169866 | MS.gene63826:CDS |
| GATCTTAGTGGTTGTGCGGT+TGG | 0.461826 | 5.3:+76171808 | MS.gene63826:CDS |
| GACCAGTAGCAAAGTAATCT+AGG | 0.464226 | 5.3:-76170851 | None:intergenic |
| GCAACTGTAGTGCTAGCGCC+AGG | 0.466715 | 5.3:-76172058 | None:intergenic |
| CGTCAATGACATTGTTACTT+CGG | 0.471639 | 5.3:+76170809 | MS.gene63826:CDS |
| GTCAGCAAAGGAGGGGTAAA+GGG | 0.471923 | 5.3:+76172224 | MS.gene63826:CDS |
| AAGAAAGATTCCGTTATCAA+TGG | 0.474326 | 5.3:+76171838 | MS.gene63826:CDS |
| CTGCCTCTGGAGTGGCTACA+AGG | 0.475001 | 5.3:-76172544 | None:intergenic |
| AGTCAGCAAAGGAGGGGTAA+AGG | 0.475808 | 5.3:+76172223 | MS.gene63826:CDS |
| TGACACTATTGGGATTGATC+TGG | 0.476022 | 5.3:+76170694 | MS.gene63826:CDS |
| TTTCAGACTGCAGAGATGCC+TGG | 0.478402 | 5.3:+76171763 | MS.gene63826:intron |
| AAGATGGCTCCCGGGATTGG+TGG | 0.498402 | 5.3:+76169869 | MS.gene63826:CDS |
| GGTGAAGTTATTAGCGGAAA+GGG | 0.508573 | 5.3:+76172617 | MS.gene63826:CDS |
| AGAATTGCCAAGATGGCTCC+CGG | 0.510784 | 5.3:+76169860 | MS.gene63826:CDS |
| CCACCGAAGCCACCAATCCC+GGG | 0.518062 | 5.3:-76169878 | None:intergenic |
| TTGCTGGTACTGATGGTGTT+GGG | 0.519574 | 5.3:+76170636 | MS.gene63826:CDS |
| ATTGCCCATGTTACTGGTGG+CGG | 0.520423 | 5.3:+76172248 | MS.gene63826:CDS |
| GAAGGTGAGTATGATCTTAG+TGG | 0.521805 | 5.3:+76171796 | MS.gene63826:CDS |
| AGGTCAAGGTCTTACTTACA+AGG | 0.523785 | 5.3:+76169796 | MS.gene63826:CDS |
| TGTTCGAAGAATTGCCAAGA+TGG | 0.524535 | 5.3:+76169853 | MS.gene63826:CDS |
| GTCATGAATGCCAGTTTCAA+AGG | 0.530046 | 5.3:-76170675 | None:intergenic |
| TGCTACTGGTCACCTTGATG+TGG | 0.532410 | 5.3:+76170863 | MS.gene63826:CDS |
| TGAAGCCATTTGAAAACTGC+AGG | 0.535533 | 5.3:-76172344 | None:intergenic |
| TGAAACCGCCACCAGTAACA+TGG | 0.537076 | 5.3:-76172253 | None:intergenic |
| TATCTCGTTGCTGGTACTGA+TGG | 0.539782 | 5.3:+76170629 | MS.gene63826:CDS |
| TCATTGAAAGATAAACTCCC+TGG | 0.543700 | 5.3:+76172040 | MS.gene63826:CDS |
| GTTGCTGGTACTGATGGTGT+TGG | 0.546250 | 5.3:+76170635 | MS.gene63826:CDS |
| GTTGCATCAGTTAAACCTAA+AGG | 0.547245 | 5.3:+76169644 | MS.gene63826:CDS |
| CGCATAGGTGAAGTTATTAG+CGG | 0.554142 | 5.3:+76172611 | MS.gene63826:CDS |
| GTTAAAGCTGAATTAGGTCA+AGG | 0.574891 | 5.3:+76169782 | MS.gene63826:CDS |
| TTCTATATACAAAGACTCGT+GGG | 0.583148 | 5.3:+76172316 | MS.gene63826:CDS |
| AGGTGAAGTTATTAGCGGAA+AGG | 0.587730 | 5.3:+76172616 | MS.gene63826:CDS |
| ATGCCTGGTCTATACAAAGA+AGG | 0.589062 | 5.3:+76171778 | MS.gene63826:CDS |
| GAATTGCCAAGATGGCTCCC+GGG | 0.589431 | 5.3:+76169861 | MS.gene63826:CDS |
| CGCTAATAACTTCACCTATG+CGG | 0.589870 | 5.3:-76172610 | None:intergenic |
| TCTATTAGCTGCCTCTGGAG+TGG | 0.591995 | 5.3:-76172552 | None:intergenic |
| GTTCAGCAACATCCACATCA+AGG | 0.596378 | 5.3:-76170875 | None:intergenic |
| CTTATCGGTTTACCATCAAG+TGG | 0.597195 | 5.3:+76171886 | MS.gene63826:CDS |
| CTTCTATATACAAAGACTCG+TGG | 0.598028 | 5.3:+76172315 | MS.gene63826:CDS |
| CAATGACATTGTTACTTCGG+GGG | 0.601621 | 5.3:+76170812 | MS.gene63826:CDS |
| ACAGAGAAAGCCTACCGCAT+AGG | 0.605304 | 5.3:+76172596 | MS.gene63826:CDS |
| TCACCTTCTTTGTATAGACC+AGG | 0.605966 | 5.3:-76171781 | None:intergenic |
| ACCAGCGTCAATGTCAACTC+CGG | 0.611044 | 5.3:-76169822 | None:intergenic |
| TGATTGCAATGCGCAAAATG+TGG | 0.613652 | 5.3:-76169682 | None:intergenic |
| GATTGCAATGCGCAAAATGT+GGG | 0.614373 | 5.3:-76169681 | None:intergenic |
| TCCGGAGTTGACATTGACGC+TGG | 0.615130 | 5.3:+76169821 | MS.gene63826:CDS |
| AATAACTTCACCTATGCGGT+AGG | 0.617101 | 5.3:-76172606 | None:intergenic |
| CAACTGTAGTGCTAGCGCCA+GGG | 0.619110 | 5.3:-76172057 | None:intergenic |
| TTGACATAGTCAGCAAAGGA+GGG | 0.619945 | 5.3:+76172216 | MS.gene63826:CDS |
| CTTGACATAGTCAGCAAAGG+AGG | 0.620172 | 5.3:+76172215 | MS.gene63826:CDS |
| TTGTGCTCTTCTCGGAGGAG+AGG | 0.621414 | 5.3:+76171025 | MS.gene63826:CDS |
| TCAATGACATTGTTACTTCG+GGG | 0.633382 | 5.3:+76170811 | MS.gene63826:CDS |
| GGTAGAGTACTTGAGAAAAG+CGG | 0.636828 | 5.3:+76172013 | MS.gene63826:intron |
| TGACATAGTCAGCAAAGGAG+GGG | 0.637780 | 5.3:+76172217 | MS.gene63826:CDS |
| AATGGAAAAGACATTACCGC+GGG | 0.638544 | 5.3:+76171856 | MS.gene63826:CDS |
| GTGCTTGACATAGTCAGCAA+AGG | 0.639899 | 5.3:+76172212 | MS.gene63826:CDS |
| GGTCTTACTTACAAGGACTC+CGG | 0.645432 | 5.3:+76169803 | MS.gene63826:CDS |
| TACTGATGGTGTTGGGACGA+AGG | 0.646206 | 5.3:+76170643 | MS.gene63826:CDS |
| CAAAATGTGGGTGATTGTAG+CGG | 0.661076 | 5.3:-76169669 | None:intergenic |
| GAAACCGCCACCAGTAACAT+GGG | 0.662266 | 5.3:-76172252 | None:intergenic |
| GGTCCTTGTAGCCACTCCAG+AGG | 0.662924 | 5.3:+76172541 | MS.gene63826:CDS |
| TCTGATTGTGCTCTTCTCGG+AGG | 0.665825 | 5.3:+76171020 | MS.gene63826:CDS |
| GGAATTGCCCATGTTACTGG+TGG | 0.666992 | 5.3:+76172245 | MS.gene63826:CDS |
| TTGCGCATTGCAATCATCGG+CGG | 0.671382 | 5.3:+76169689 | MS.gene63826:CDS |
| ACCGATAAGAATGTCGCCCG+CGG | 0.680506 | 5.3:-76171872 | None:intergenic |
| GTATGATCTTAGTGGTTGTG+CGG | 0.694362 | 5.3:+76171804 | MS.gene63826:CDS |
| CAATGGAAAAGACATTACCG+CGG | 0.734778 | 5.3:+76171855 | MS.gene63826:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTATAAAATTAT+TGG | + | chr5.3:76171964-76171983 | MS.gene63826:intron | 0.0% |
| !!! | TGAAATATATCAATATATTT+TGG | + | chr5.3:76171992-76172011 | MS.gene63826:intron | 10.0% |
| !! | AAAAGAATCTTTAAATTACA+AGG | - | chr5.3:76170322-76170341 | None:intergenic | 15.0% |
| !! | AAGTAATCTAGGAAAAATAA+AGG | - | chr5.3:76170843-76170862 | None:intergenic | 20.0% |
| !! | AAGTGTATAAAACTAATTAG+AGG | - | chr5.3:76171744-76171763 | None:intergenic | 20.0% |
| !! | ACATCAAATTTCAGAATTAA+AGG | + | chr5.3:76170358-76170377 | MS.gene63826:intron | 20.0% |
| !! | CAAAGAATCTTTAAATTACA+AGG | + | chr5.3:76170466-76170485 | MS.gene63826:intron | 20.0% |
| !! | CAAATCAATATCCAATAAAA+AGG | - | chr5.3:76170586-76170605 | None:intergenic | 20.0% |
| !! | TGTTTGAATAAAATGTCAAT+AGG | - | chr5.3:76171563-76171582 | None:intergenic | 20.0% |
| !!! | AATTTGATCTTCAAATCTTT+TGG | + | chr5.3:76172424-76172443 | MS.gene63826:intron | 20.0% |
| !!! | TAAATGGTTTTATTGGAATT+TGG | + | chr5.3:76171393-76171412 | MS.gene63826:intron | 20.0% |
| !!! | TTTGTTTAGTTCCTTTTTAT+TGG | + | chr5.3:76170572-76170591 | MS.gene63826:intron | 20.0% |
| ! | AAAAAGGAACTAAACAAACA+AGG | - | chr5.3:76170570-76170589 | None:intergenic | 25.0% |
| ! | AAAAGAAAAATGAGTTACCA+AGG | - | chr5.3:76169913-76169932 | None:intergenic | 25.0% |
| ! | AAAAGGAACTAAACAAACAA+GGG | - | chr5.3:76170569-76170588 | None:intergenic | 25.0% |
| ! | AAAGAAAAATGAGTTACCAA+GGG | - | chr5.3:76169912-76169931 | None:intergenic | 25.0% |
| ! | AACTAAGATCTATGTTAAAC+AGG | + | chr5.3:76172099-76172118 | MS.gene63826:CDS | 25.0% |
| ! | AAGTCGTAATTCTTCTTATT+AGG | + | chr5.3:76171439-76171458 | MS.gene63826:intron | 25.0% |
| ! | AATCAATTCTACATGCAAAA+TGG | - | chr5.3:76169951-76169970 | None:intergenic | 25.0% |
| ! | ACAAAATAAATGATGTGGTA+GGG | - | chr5.3:76170418-76170437 | None:intergenic | 25.0% |
| ! | ACCCTAAATTTATTATGAGT+TGG | - | chr5.3:76171110-76171129 | None:intergenic | 25.0% |
| ! | ACTGTACAAAATAAATGATG+TGG | - | chr5.3:76170423-76170442 | None:intergenic | 25.0% |
| ! | ATAAGATTGCAATAAGCTAA+TGG | - | chr5.3:76171586-76171605 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | + | chr5.3:76170470-76170489 | MS.gene63826:intron | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | - | chr5.3:76170489-76170470 | None:intergenic | 25.0% |
| ! | GCCAACTCATAATAAATTTA+GGG | + | chr5.3:76171106-76171125 | MS.gene63826:intron | 25.0% |
| ! | GTTATAAAAGGAATTGTTGA+TGG | + | chr5.3:76170987-76171006 | MS.gene63826:CDS | 25.0% |
| ! | TACAAAATAAATGATGTGGT+AGG | - | chr5.3:76170419-76170438 | None:intergenic | 25.0% |
| ! | TGCCAACTCATAATAAATTT+AGG | + | chr5.3:76171105-76171124 | MS.gene63826:intron | 25.0% |
| ! | TGTTTAACATAGATCTTAGT+TGG | - | chr5.3:76172100-76172119 | None:intergenic | 25.0% |
| !! | AATGTCTTTTCCATTGATAA+CGG | - | chr5.3:76171851-76171870 | None:intergenic | 25.0% |
| !! | CAATAAAACCATTTAGAATG+AGG | - | chr5.3:76171388-76171407 | None:intergenic | 25.0% |
| !! | GCAAAAAACATTTTTACAGT+GGG | - | chr5.3:76170291-76170310 | None:intergenic | 25.0% |
| !! | TAGAATTGATTCTAACGTAA+CGG | + | chr5.3:76169960-76169979 | MS.gene63826:intron | 25.0% |
| !! | TGCAAAAAACATTTTTACAG+TGG | - | chr5.3:76170292-76170311 | None:intergenic | 25.0% |
| !!! | AGAGGTATTGAAATATTTTG+TGG | + | chr5.3:76171043-76171062 | MS.gene63826:intron | 25.0% |
| !!! | CTCATTCTAAATGGTTTTAT+TGG | + | chr5.3:76171386-76171405 | MS.gene63826:intron | 25.0% |
| !!! | TAATTCTGAAATTTGATGTC+AGG | - | chr5.3:76170357-76170376 | None:intergenic | 25.0% |
| !!! | TTCAGAATTAAAGGTACTTT+TGG | + | chr5.3:76170367-76170386 | MS.gene63826:intron | 25.0% |
| !!! | TTTTGATTGTTTTTCTCTCT+AGG | + | chr5.3:76170776-76170795 | MS.gene63826:intron | 25.0% |
| AAGAAAAATGAGTTACCAAG+GGG | - | chr5.3:76169911-76169930 | None:intergenic | 30.0% | |
| AAGAAAGATTCCGTTATCAA+TGG | + | chr5.3:76171838-76171857 | MS.gene63826:CDS | 30.0% | |
| AGAAAACCACAATAGAACAA+AGG | + | chr5.3:76171281-76171300 | MS.gene63826:intron | 30.0% | |
| AGACAACTTCAAGATCAAAA+GGG | - | chr5.3:76172174-76172193 | None:intergenic | 30.0% | |
| ATAGAAGACCTCATTCTAAA+TGG | + | chr5.3:76171377-76171396 | MS.gene63826:intron | 30.0% | |
| ATTCTACATGCAAAATGGAA+TGG | - | chr5.3:76169946-76169965 | None:intergenic | 30.0% | |
| ATTGCTAGTATCTGATATTG+AGG | + | chr5.3:76171190-76171209 | MS.gene63826:intron | 30.0% | |
| GAAGAAGAGAAAATCAAATG+AGG | - | chr5.3:76170965-76170984 | None:intergenic | 30.0% | |
| GACATGTTCAATTGCTTATT+TGG | + | chr5.3:76171466-76171485 | MS.gene63826:intron | 30.0% | |
| GAGAAAATCAAATGAGGAAT+AGG | - | chr5.3:76170959-76170978 | None:intergenic | 30.0% | |
| GTTCAATTGCTTATTTGGAT+AGG | + | chr5.3:76171471-76171490 | MS.gene63826:intron | 30.0% | |
| TACTAATTACCTCTCACATT+AGG | + | chr5.3:76172463-76172482 | MS.gene63826:intron | 30.0% | |
| TCAAACAAGGAAATTACAGA+CGG | + | chr5.3:76170497-76170516 | MS.gene63826:intron | 30.0% | |
| TGTGGTTTATTCTTTCCAAT+TGG | + | chr5.3:76171061-76171080 | MS.gene63826:intron | 30.0% | |
| TTAAGCGCTTATAGCATAAA+CGG | - | chr5.3:76170147-76170166 | None:intergenic | 30.0% | |
| TTCTATATACAAAGACTCGT+GGG | + | chr5.3:76172316-76172335 | MS.gene63826:CDS | 30.0% | |
| TTGCTAGTATCTGATATTGA+GGG | + | chr5.3:76171191-76171210 | MS.gene63826:intron | 30.0% | |
| ! | AGTTTGAGGTATACTTATTG+AGG | + | chr5.3:76171241-76171260 | MS.gene63826:intron | 30.0% |
| ! | ATGATGCGCACTTTTAATAT+GGG | + | chr5.3:76172509-76172528 | MS.gene63826:CDS | 30.0% |
| ! | GATTGATCTGGTAAACATTT+TGG | + | chr5.3:76170706-76170725 | MS.gene63826:intron | 30.0% |
| ! | TCTCTTCTTCAGGTTATAAA+AGG | + | chr5.3:76170975-76170994 | MS.gene63826:intron | 30.0% |
| ! | TTGAGTGTTTCTGTTACTTA+GGG | + | chr5.3:76170747-76170766 | MS.gene63826:intron | 30.0% |
| ! | TTTGAGTGTTTCTGTTACTT+AGG | + | chr5.3:76170746-76170765 | MS.gene63826:intron | 30.0% |
| !! | ATGGTTTTTCACTTGTTAGA+AGG | + | chr5.3:76171920-76171939 | MS.gene63826:CDS | 30.0% |
| !! | CATTTGATTTTCTCTTCTTC+AGG | + | chr5.3:76170965-76170984 | MS.gene63826:intron | 30.0% |
| !! | TTTTTCACTTGTTAGAAGGT+TGG | + | chr5.3:76171924-76171943 | MS.gene63826:intron | 30.0% |
| !!! | GTCTCTTGTCTTTTTGAAAT+AGG | + | chr5.3:76172190-76172209 | MS.gene63826:intron | 30.0% |
| AAATAAATGATGTGGTAGGG+AGG | - | chr5.3:76170415-76170434 | None:intergenic | 35.0% | |
| AGAAAAATGAGTTACCAAGG+GGG | - | chr5.3:76169910-76169929 | None:intergenic | 35.0% | |
| ATATATGCGGGAAAAGTTTG+AGG | + | chr5.3:76171227-76171246 | MS.gene63826:intron | 35.0% | |
| CAAACAAGGAAATTACAGAC+GGG | + | chr5.3:76170498-76170517 | MS.gene63826:intron | 35.0% | |
| CATTTAGATAAGCTTGAGTC+GGG | + | chr5.3:76171307-76171326 | MS.gene63826:intron | 35.0% | |
| CTTCTATATACAAAGACTCG+TGG | + | chr5.3:76172315-76172334 | MS.gene63826:CDS | 35.0% | |
| GACAACTTCAAGATCAAAAG+GGG | - | chr5.3:76172173-76172192 | None:intergenic | 35.0% | |
| GACTTGAATAGATCATTGCA+TGG | - | chr5.3:76171424-76171443 | None:intergenic | 35.0% | |
| GAGACAACTTCAAGATCAAA+AGG | - | chr5.3:76172175-76172194 | None:intergenic | 35.0% | |
| GCATAGCATGAAATATATGC+GGG | + | chr5.3:76171215-76171234 | MS.gene63826:intron | 35.0% | |
| GCATTTAGATAAGCTTGAGT+CGG | + | chr5.3:76171306-76171325 | MS.gene63826:intron | 35.0% | |
| GGCATAGCATGAAATATATG+CGG | + | chr5.3:76171214-76171233 | MS.gene63826:intron | 35.0% | |
| GTTAAAGCTGAATTAGGTCA+AGG | + | chr5.3:76169782-76169801 | MS.gene63826:CDS | 35.0% | |
| GTTGCATCAGTTAAACCTAA+AGG | + | chr5.3:76169644-76169663 | MS.gene63826:CDS | 35.0% | |
| TCATTGAAAGATAAACTCCC+TGG | + | chr5.3:76172040-76172059 | MS.gene63826:CDS | 35.0% | |
| TGCTAGTATCTGATATTGAG+GGG | + | chr5.3:76171192-76171211 | MS.gene63826:intron | 35.0% | |
| TGGATTTCGATCAAATGTCA+GGG | + | chr5.3:76170526-76170545 | MS.gene63826:intron | 35.0% | |
| TTCCTAGATTACTTTGCTAC+TGG | + | chr5.3:76170849-76170868 | MS.gene63826:CDS | 35.0% | |
| ! | AAATGCCTGCAGTTTTCAAA+TGG | + | chr5.3:76172339-76172358 | MS.gene63826:CDS | 35.0% |
| ! | ATTTTGCGCATTGCAATCAT+CGG | + | chr5.3:76169686-76169705 | MS.gene63826:CDS | 35.0% |
| ! | CGTCAATGACATTGTTACTT+CGG | + | chr5.3:76170809-76170828 | MS.gene63826:CDS | 35.0% |
| ! | CTCATTTTCATGAGTTCACT+AGG | + | chr5.3:76170022-76170041 | MS.gene63826:intron | 35.0% |
| ! | GATGATGCGCACTTTTAATA+TGG | + | chr5.3:76172508-76172527 | MS.gene63826:CDS | 35.0% |
| ! | GCACTTTTAATATGGGCATT+GGG | + | chr5.3:76172516-76172535 | MS.gene63826:CDS | 35.0% |
| ! | GTCAATGACATTGTTACTTC+GGG | + | chr5.3:76170810-76170829 | MS.gene63826:CDS | 35.0% |
| ! | GTTGCTGTTAAAGCTGAATT+AGG | + | chr5.3:76169776-76169795 | MS.gene63826:CDS | 35.0% |
| ! | TACAGTTGCAGAAGCTTTAA+TGG | + | chr5.3:76172072-76172091 | MS.gene63826:CDS | 35.0% |
| ! | TCAATGACATTGTTACTTCG+GGG | + | chr5.3:76170811-76170830 | MS.gene63826:CDS | 35.0% |
| ! | TCTGAAATTTGATGTCAGGA+AGG | - | chr5.3:76170353-76170372 | None:intergenic | 35.0% |
| !!! | TGATTTGACTTGTTTTGCGT+AGG | + | chr5.3:76170599-76170618 | MS.gene63826:intron | 35.0% |
| !!! | TTTTAATATGGGCATTGGGA+TGG | + | chr5.3:76172520-76172539 | MS.gene63826:CDS | 35.0% |
| AAGCTATGAATCTCAGCTTG+AGG | - | chr5.3:76170193-76170212 | None:intergenic | 40.0% | |
| AATAACTTCACCTATGCGGT+AGG | - | chr5.3:76172609-76172628 | None:intergenic | 40.0% | |
| AATGGAAAAGACATTACCGC+GGG | + | chr5.3:76171856-76171875 | MS.gene63826:CDS | 40.0% | |
| AATTACCTCTCACATTAGGC+TGG | + | chr5.3:76172467-76172486 | MS.gene63826:intron | 40.0% | |
| ACTGGCATTCATGACACTAT+TGG | + | chr5.3:76170683-76170702 | MS.gene63826:CDS | 40.0% | |
| AGGTCAAGGTCTTACTTACA+AGG | + | chr5.3:76169796-76169815 | MS.gene63826:CDS | 40.0% | |
| AGGTGAAGTTATTAGCGGAA+AGG | + | chr5.3:76172616-76172635 | MS.gene63826:CDS | 40.0% | |
| AGTATTCTATTAGCTGCCTC+TGG | - | chr5.3:76172560-76172579 | None:intergenic | 40.0% | |
| ATGCAGCCTTTGTTCTATTG+TGG | - | chr5.3:76171290-76171309 | None:intergenic | 40.0% | |
| ATGCCTGGTCTATACAAAGA+AGG | + | chr5.3:76171778-76171797 | MS.gene63826:CDS | 40.0% | |
| ATTACCTCTCACATTAGGCT+GGG | + | chr5.3:76172468-76172487 | MS.gene63826:intron | 40.0% | |
| CAAAATGTGGGTGATTGTAG+CGG | - | chr5.3:76169672-76169691 | None:intergenic | 40.0% | |
| CAAGGTTGGAATCTCAAACA+AGG | + | chr5.3:76170484-76170503 | MS.gene63826:intron | 40.0% | |
| CAATCTGATTGTGCTCTTCT+CGG | + | chr5.3:76171017-76171036 | MS.gene63826:CDS | 40.0% | |
| CAATGGAAAAGACATTACCG+CGG | + | chr5.3:76171855-76171874 | MS.gene63826:CDS | 40.0% | |
| CGCATAGGTGAAGTTATTAG+CGG | + | chr5.3:76172611-76172630 | MS.gene63826:CDS | 40.0% | |
| CGCTAATAACTTCACCTATG+CGG | - | chr5.3:76172613-76172632 | None:intergenic | 40.0% | |
| CTGGATTTCGATCAAATGTC+AGG | + | chr5.3:76170525-76170544 | MS.gene63826:intron | 40.0% | |
| CTGGCATTCATGACACTATT+GGG | + | chr5.3:76170684-76170703 | MS.gene63826:CDS | 40.0% | |
| GAAGGTGAGTATGATCTTAG+TGG | + | chr5.3:76171796-76171815 | MS.gene63826:CDS | 40.0% | |
| GACCAGTAGCAAAGTAATCT+AGG | - | chr5.3:76170854-76170873 | None:intergenic | 40.0% | |
| GATTGCAATGCGCAAAATGT+GGG | - | chr5.3:76169684-76169703 | None:intergenic | 40.0% | |
| GATTTCGATCAAATGTCAGG+GGG | + | chr5.3:76170528-76170547 | MS.gene63826:intron | 40.0% | |
| GCTAGTATCTGATATTGAGG+GGG | + | chr5.3:76171193-76171212 | MS.gene63826:intron | 40.0% | |
| GGATTTCGATCAAATGTCAG+GGG | + | chr5.3:76170527-76170546 | MS.gene63826:intron | 40.0% | |
| GGTGAAGTTATTAGCGGAAA+GGG | + | chr5.3:76172617-76172636 | MS.gene63826:CDS | 40.0% | |
| GTATGATCTTAGTGGTTGTG+CGG | + | chr5.3:76171804-76171823 | MS.gene63826:CDS | 40.0% | |
| GTCATGAATGCCAGTTTCAA+AGG | - | chr5.3:76170678-76170697 | None:intergenic | 40.0% | |
| TCAAGTGGAGTTCACTCTAA+TGG | + | chr5.3:76171901-76171920 | MS.gene63826:CDS | 40.0% | |
| TCACCTTCTTTGTATAGACC+AGG | - | chr5.3:76171784-76171803 | None:intergenic | 40.0% | |
| TGAAGCCATTTGAAAACTGC+AGG | - | chr5.3:76172347-76172366 | None:intergenic | 40.0% | |
| TGACACTATTGGGATTGATC+TGG | + | chr5.3:76170694-76170713 | MS.gene63826:CDS | 40.0% | |
| TGATTGCAATGCGCAAAATG+TGG | - | chr5.3:76169685-76169704 | None:intergenic | 40.0% | |
| TGTTCGAAGAATTGCCAAGA+TGG | + | chr5.3:76169853-76169872 | MS.gene63826:CDS | 40.0% | |
| TTAGAGTGAACTCCACTTGA+TGG | - | chr5.3:76171901-76171920 | None:intergenic | 40.0% | |
| TTGACATAGTCAGCAAAGGA+GGG | + | chr5.3:76172216-76172235 | MS.gene63826:CDS | 40.0% | |
| ! | AAACCTTCTGGAAAAACTCG+AGG | - | chr5.3:76172290-76172309 | None:intergenic | 40.0% |
| ! | AGGTGATTTTCCCAAATGAC+AGG | - | chr5.3:76170395-76170414 | None:intergenic | 40.0% |
| ! | AGTTTTCAAATGGCTTCAGC+AGG | + | chr5.3:76172349-76172368 | MS.gene63826:CDS | 40.0% |
| ! | ATTCCTCGAGTTTTTCCAGA+AGG | + | chr5.3:76172284-76172303 | MS.gene63826:CDS | 40.0% |
| ! | CAATGACATTGTTACTTCGG+GGG | + | chr5.3:76170812-76170831 | MS.gene63826:CDS | 40.0% |
| ! | CGAGTTTTTCCAGAAGGTTT+TGG | + | chr5.3:76172290-76172309 | MS.gene63826:CDS | 40.0% |
| ! | CGCACTTTTAATATGGGCAT+TGG | + | chr5.3:76172515-76172534 | MS.gene63826:CDS | 40.0% |
| ! | GGTAGAGTACTTGAGAAAAG+CGG | + | chr5.3:76172013-76172032 | MS.gene63826:intron | 40.0% |
| ! | GGTGATTTTCCCAAATGACA+GGG | - | chr5.3:76170394-76170413 | None:intergenic | 40.0% |
| ! | GTGATTTTCCCAAATGACAG+GGG | - | chr5.3:76170393-76170412 | None:intergenic | 40.0% |
| ! | TATTTTCCAACATACCCCAG+TGG | + | chr5.3:76170265-76170284 | MS.gene63826:intron | 40.0% |
| !! | ATAGAAGCACCAAAACCTTC+TGG | - | chr5.3:76172302-76172321 | None:intergenic | 40.0% |
| !! | CTTATCGGTTTACCATCAAG+TGG | + | chr5.3:76171886-76171905 | MS.gene63826:CDS | 40.0% |
| AAGGGAATTGCCCATGTTAC+TGG | + | chr5.3:76172242-76172261 | MS.gene63826:CDS | 45.0% | |
| AGTTGTGCGTGTGTGAGAAA+AGG | - | chr5.3:76171674-76171693 | None:intergenic | 45.0% | |
| ATCTTAGTGGTTGTGCGGTT+GGG | + | chr5.3:76171809-76171828 | MS.gene63826:CDS | 45.0% | |
| CTTGACATAGTCAGCAAAGG+AGG | + | chr5.3:76172215-76172234 | MS.gene63826:CDS | 45.0% | |
| GAAATTACAGACGGGCAAAC+TGG | + | chr5.3:76170506-76170525 | MS.gene63826:intron | 45.0% | |
| GGATGTTGCTGAACAGGTAA+TGG | + | chr5.3:76170884-76170903 | MS.gene63826:intron | 45.0% | |
| GGTCTTACTTACAAGGACTC+CGG | + | chr5.3:76169803-76169822 | MS.gene63826:CDS | 45.0% | |
| GGTGATTCATATCTCGTTGC+TGG | + | chr5.3:76170620-76170639 | MS.gene63826:intron | 45.0% | |
| GTGCTTGACATAGTCAGCAA+AGG | + | chr5.3:76172212-76172231 | MS.gene63826:CDS | 45.0% | |
| GTTCAGCAACATCCACATCA+AGG | - | chr5.3:76170878-76170897 | None:intergenic | 45.0% | |
| GTTGGCAAGAATAGACGAGA+CGG | - | chr5.3:76171092-76171111 | None:intergenic | 45.0% | |
| TCTCAGCTTGAGGTCTTGAT+AGG | - | chr5.3:76170183-76170202 | None:intergenic | 45.0% | |
| TGACATAGTCAGCAAAGGAG+GGG | + | chr5.3:76172217-76172236 | MS.gene63826:CDS | 45.0% | |
| TGATGTGGATGTTGCTGAAC+AGG | + | chr5.3:76170878-76170897 | MS.gene63826:CDS | 45.0% | |
| ! | ACATTTTTACAGTGGGCCAC+TGG | - | chr5.3:76170284-76170303 | None:intergenic | 45.0% |
| ! | ATTTTTACAGTGGGCCACTG+GGG | - | chr5.3:76170282-76170301 | None:intergenic | 45.0% |
| ! | CATTTTTACAGTGGGCCACT+GGG | - | chr5.3:76170283-76170302 | None:intergenic | 45.0% |
| ! | TACTTTTGGCCCCTGTCATT+TGG | + | chr5.3:76170381-76170400 | MS.gene63826:intron | 45.0% |
| ! | TATCTCGTTGCTGGTACTGA+TGG | + | chr5.3:76170629-76170648 | MS.gene63826:CDS | 45.0% |
| !! | ACTTTTGGCCCCTGTCATTT+GGG | + | chr5.3:76170382-76170401 | MS.gene63826:intron | 45.0% |
| !! | GTAATGGATGTGCTTCTAGC+TGG | + | chr5.3:76170900-76170919 | MS.gene63826:intron | 45.0% |
| !! | GTGATGCTTGCCTTTGAAAC+TGG | + | chr5.3:76170665-76170684 | MS.gene63826:CDS | 45.0% |
| !! | TTGCTGGTACTGATGGTGTT+GGG | + | chr5.3:76170636-76170655 | MS.gene63826:CDS | 45.0% |
| ACAGAGAAAGCCTACCGCAT+AGG | + | chr5.3:76172596-76172615 | MS.gene63826:CDS | 50.0% | |
| ACCAGCGTCAATGTCAACTC+CGG | - | chr5.3:76169825-76169844 | None:intergenic | 50.0% | |
| AGAATTGCCAAGATGGCTCC+CGG | + | chr5.3:76169860-76169879 | MS.gene63826:CDS | 50.0% | |
| AGTCAGCAAAGGAGGGGTAA+AGG | + | chr5.3:76172223-76172242 | MS.gene63826:CDS | 50.0% | |
| ATTGCCCATGTTACTGGTGG+CGG | + | chr5.3:76172248-76172267 | MS.gene63826:CDS | 50.0% | |
| GAAACCGCCACCAGTAACAT+GGG | - | chr5.3:76172255-76172274 | None:intergenic | 50.0% | |
| GACGAGACGGCAAATCCAAT+TGG | - | chr5.3:76171079-76171098 | None:intergenic | 50.0% | |
| GATAAGCTTGAGTCGGGTAG+AGG | + | chr5.3:76171313-76171332 | MS.gene63826:intron | 50.0% | |
| GATCTTAGTGGTTGTGCGGT+TGG | + | chr5.3:76171808-76171827 | MS.gene63826:CDS | 50.0% | |
| GGAATTGCCCATGTTACTGG+TGG | + | chr5.3:76172245-76172264 | MS.gene63826:CDS | 50.0% | |
| GTCAGCAAAGGAGGGGTAAA+GGG | + | chr5.3:76172224-76172243 | MS.gene63826:CDS | 50.0% | |
| GTGATTGTAGCGGTGCCTTT+AGG | - | chr5.3:76169662-76169681 | None:intergenic | 50.0% | |
| TCTGATTGTGCTCTTCTCGG+AGG | + | chr5.3:76171020-76171039 | MS.gene63826:CDS | 50.0% | |
| TCTTCCCAGCCTAATGTGAG+AGG | - | chr5.3:76172475-76172494 | None:intergenic | 50.0% | |
| TGAAACCGCCACCAGTAACA+TGG | - | chr5.3:76172256-76172275 | None:intergenic | 50.0% | |
| TGCTACTGGTCACCTTGATG+TGG | + | chr5.3:76170863-76170882 | MS.gene63826:CDS | 50.0% | |
| TTCGGTGGTTTATTCCCCCT+TGG | + | chr5.3:76169893-76169912 | MS.gene63826:CDS | 50.0% | |
| TTGCGCATTGCAATCATCGG+CGG | + | chr5.3:76169689-76169708 | MS.gene63826:CDS | 50.0% | |
| TTTCAGACTGCAGAGATGCC+TGG | + | chr5.3:76171763-76171782 | MS.gene63826:intron | 50.0% | |
| ! | GGATGTGCTTCTAGCTGGTT+TGG | + | chr5.3:76170905-76170924 | MS.gene63826:intron | 50.0% |
| ! | TACTGATGGTGTTGGGACGA+AGG | + | chr5.3:76170643-76170662 | MS.gene63826:CDS | 50.0% |
| ! | TCTATTAGCTGCCTCTGGAG+TGG | - | chr5.3:76172555-76172574 | None:intergenic | 50.0% |
| !! | GTTGCTGGTACTGATGGTGT+TGG | + | chr5.3:76170635-76170654 | MS.gene63826:CDS | 50.0% |
| ACCGATAAGAATGTCGCCCG+CGG | - | chr5.3:76171875-76171894 | None:intergenic | 55.0% | |
| ACCGCGGGCGACATTCTTAT+CGG | + | chr5.3:76171871-76171890 | MS.gene63826:CDS | 55.0% | |
| CAACTGTAGTGCTAGCGCCA+GGG | - | chr5.3:76172060-76172079 | None:intergenic | 55.0% | |
| GAATTGCCAAGATGGCTCCC+GGG | + | chr5.3:76169861-76169880 | MS.gene63826:CDS | 55.0% | |
| TCCGGAGTTGACATTGACGC+TGG | + | chr5.3:76169821-76169840 | MS.gene63826:CDS | 55.0% | |
| TTGTGCTCTTCTCGGAGGAG+AGG | + | chr5.3:76171025-76171044 | MS.gene63826:CDS | 55.0% | |
| AAGATGGCTCCCGGGATTGG+TGG | + | chr5.3:76169869-76169888 | MS.gene63826:CDS | 60.0% | |
| ACCAATCCCGGGAGCCATCT+TGG | - | chr5.3:76169870-76169889 | None:intergenic | 60.0% | |
| ACCACCGAAGCCACCAATCC+CGG | - | chr5.3:76169882-76169901 | None:intergenic | 60.0% | |
| AGTGGGCCACTGGGGTATGT+TGG | - | chr5.3:76170274-76170293 | None:intergenic | 60.0% | |
| GCAACTGTAGTGCTAGCGCC+AGG | - | chr5.3:76172061-76172080 | None:intergenic | 60.0% | |
| GGTCCTTGTAGCCACTCCAG+AGG | + | chr5.3:76172541-76172560 | MS.gene63826:CDS | 60.0% | |
| !! | CTGCCTCTGGAGTGGCTACA+AGG | - | chr5.3:76172547-76172566 | None:intergenic | 60.0% |
| CCACCGAAGCCACCAATCCC+GGG | - | chr5.3:76169881-76169900 | None:intergenic | 65.0% | |
| GCCAAGATGGCTCCCGGGAT+TGG | + | chr5.3:76169866-76169885 | MS.gene63826:CDS | 65.0% | |
| ! | GCTCCCGGGATTGGTGGCTT+CGG | + | chr5.3:76169875-76169894 | MS.gene63826:CDS | 65.0% |
| ! | CCCGGGATTGGTGGCTTCGG+TGG | + | chr5.3:76169878-76169897 | MS.gene63826:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 76169602 | 76172655 | 76169602 | ID=MS.gene63826 |
| chr5.3 | mRNA | 76169602 | 76172655 | 76169602 | ID=MS.gene63826.t1;Parent=MS.gene63826 |
| chr5.3 | exon | 76169602 | 76169914 | 76169602 | ID=MS.gene63826.t1.exon1;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76169602 | 76169914 | 76169602 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| chr5.3 | exon | 76170621 | 76170715 | 76170621 | ID=MS.gene63826.t1.exon2;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76170621 | 76170715 | 76170621 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| chr5.3 | exon | 76170798 | 76170899 | 76170798 | ID=MS.gene63826.t1.exon3;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76170798 | 76170899 | 76170798 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| chr5.3 | exon | 76170987 | 76171046 | 76170987 | ID=MS.gene63826.t1.exon4;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76170987 | 76171046 | 76170987 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| chr5.3 | exon | 76171769 | 76171941 | 76171769 | ID=MS.gene63826.t1.exon5;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76171769 | 76171941 | 76171769 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| chr5.3 | exon | 76172018 | 76172120 | 76172018 | ID=MS.gene63826.t1.exon6;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76172018 | 76172120 | 76172018 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| chr5.3 | exon | 76172212 | 76172370 | 76172212 | ID=MS.gene63826.t1.exon7;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76172212 | 76172370 | 76172212 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| chr5.3 | exon | 76172485 | 76172655 | 76172485 | ID=MS.gene63826.t1.exon8;Parent=MS.gene63826.t1 |
| chr5.3 | CDS | 76172485 | 76172655 | 76172485 | ID=cds.MS.gene63826.t1;Parent=MS.gene63826.t1 |
| Gene Sequence |
| Protein sequence |
