Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63895.t1 | XP_003617738.1 | 89.3 | 391 | 34 | 1 | 1 | 391 | 1 | 383 | 5.80E-109 | 404.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63895.t1 | G7K4I1 | 89.3 | 391 | 34 | 1 | 1 | 391 | 1 | 383 | 4.2e-109 | 404.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056760 | MS.gene63895 | 0.812326 | 4.49E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63895.t1 | MTR_5g094910 | 90.537 | 391 | 29 | 1 | 1 | 391 | 1 | 383 | 0.0 | 656 |
| MS.gene63895.t1 | MTR_5g094920 | 63.764 | 356 | 75 | 6 | 75 | 391 | 197 | 537 | 1.16e-131 | 388 |
| MS.gene63895.t1 | MTR_5g094920 | 50.000 | 246 | 51 | 5 | 1 | 213 | 1 | 207 | 6.38e-56 | 192 |
| MS.gene63895.t1 | MTR_5g094960 | 50.951 | 473 | 143 | 11 | 1 | 390 | 1 | 467 | 1.58e-119 | 355 |
| MS.gene63895.t1 | MTR_5g094990 | 50.316 | 475 | 144 | 13 | 1 | 390 | 1 | 468 | 1.31e-109 | 330 |
| MS.gene63895.t1 | MTR_5g094850 | 44.773 | 507 | 136 | 15 | 3 | 391 | 1 | 481 | 1.53e-89 | 278 |
| MS.gene63895.t1 | MTR_5g094850 | 42.830 | 530 | 136 | 15 | 3 | 391 | 1 | 504 | 9.89e-86 | 269 |
| MS.gene63895.t1 | MTR_5g094950 | 40.714 | 560 | 160 | 14 | 1 | 391 | 1 | 557 | 2.39e-73 | 239 |
| MS.gene63895.t1 | MTR_5g095390 | 39.207 | 454 | 126 | 20 | 3 | 391 | 1 | 369 | 3.23e-53 | 181 |
| MS.gene63895.t1 | MTR_5g094970 | 40.860 | 279 | 94 | 4 | 36 | 243 | 14 | 292 | 5.31e-40 | 145 |
| MS.gene63895.t1 | MTR_5g095050 | 43.243 | 185 | 78 | 4 | 64 | 243 | 220 | 382 | 6.28e-27 | 112 |
| MS.gene63895.t1 | MTR_5g095370 | 36.310 | 168 | 74 | 6 | 1 | 148 | 1 | 155 | 8.98e-14 | 70.5 |
| MS.gene63895.t1 | MTR_5g077500 | 35.000 | 180 | 72 | 4 | 72 | 246 | 98 | 237 | 1.20e-13 | 71.2 |
| MS.gene63895.t1 | MTR_1g071620 | 53.012 | 83 | 29 | 2 | 186 | 258 | 106 | 188 | 2.43e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAATGAATGCTATTTA+TGG | 0.157301 | 5.1:-75960759 | MS.gene63895:CDS |
| TGAATTAGAGTCTGAAATTT+TGG | 0.200999 | 5.1:-75962558 | MS.gene63895:CDS |
| TAAATTAGAGCATGAGATTT+TGG | 0.226147 | 5.1:-75962465 | MS.gene63895:CDS |
| TGATGACCCAGGTTCGATTT+TGG | 0.247518 | 5.1:+75962880 | None:intergenic |
| GGAAACAATGAAGAAGAATT+TGG | 0.272695 | 5.1:-75962312 | MS.gene63895:CDS |
| CGGACGGTTGAGATATTACT+TGG | 0.354529 | 5.1:-75962254 | MS.gene63895:CDS |
| CGTCAGAAACATCCTCTTCC+TGG | 0.357072 | 5.1:+75962156 | None:intergenic |
| GTTAACCGCATTTGCAAACT+TGG | 0.363844 | 5.1:+75960677 | None:intergenic |
| GTAGATGCTCATCGCACTCT+TGG | 0.411937 | 5.1:-75962119 | MS.gene63895:CDS |
| GGGAACAGTGAACATGAAAA+AGG | 0.418775 | 5.1:-75960847 | MS.gene63895:CDS |
| TTCAAGTTTGTTGCTAGGGT+TGG | 0.426251 | 5.1:+75962850 | None:intergenic |
| TATCTTCAAGTTTGTTGCTA+GGG | 0.435539 | 5.1:+75962846 | None:intergenic |
| GGTTGAAGTTATGAATTTGA+AGG | 0.450314 | 5.1:-75962633 | MS.gene63895:CDS |
| TTGAAGGAGAAACTTGTTGA+TGG | 0.453707 | 5.1:-75962617 | MS.gene63895:CDS |
| GATTAACACTGGTGAATTGA+AGG | 0.456161 | 5.1:-75962333 | MS.gene63895:CDS |
| AATGAACTTGTTGTGCTAAG+AGG | 0.457558 | 5.1:-75962497 | MS.gene63895:CDS |
| ATCTTAACAAGGTCATGAAT+AGG | 0.459377 | 5.1:+75962821 | None:intergenic |
| GACGCTCAAGGTGCATCATC+AGG | 0.460261 | 5.1:-75962065 | MS.gene63895:intron |
| CATCGTTGTTGTCGTTATCA+AGG | 0.462013 | 5.1:+75960808 | None:intergenic |
| GGAGGGTGATAAGAATGATT+TGG | 0.467049 | 5.1:-75962366 | MS.gene63895:CDS |
| TTATCTTCAAGTTTGTTGCT+AGG | 0.469484 | 5.1:+75962845 | None:intergenic |
| ACAAAGCAAGGTTCGTGTAA+TGG | 0.481653 | 5.1:-75962387 | MS.gene63895:CDS |
| ATCCAACCTTGAAACTCTTC+CGG | 0.481888 | 5.1:+75962202 | None:intergenic |
| CTTGCTCTGTAGCTGAGTAC+TGG | 0.490258 | 5.1:+75962088 | None:intergenic |
| AAAATGTATGAGAAAGGTAA+TGG | 0.491795 | 5.1:-75962698 | MS.gene63895:CDS |
| GAGGAAATTAAATGAAAAGA+TGG | 0.502373 | 5.1:-75962531 | MS.gene63895:CDS |
| ATCATCAGAGGAAGAAGAAG+TGG | 0.517134 | 5.1:+75960614 | None:intergenic |
| AGTTTGTTGCTAGGGTTGGT+AGG | 0.527539 | 5.1:+75962854 | None:intergenic |
| GCTAGTGATGAACTTGGAGT+TGG | 0.533733 | 5.1:+75960714 | None:intergenic |
| ATTCAACCCAAAATCGAACC+TGG | 0.539946 | 5.1:-75962887 | MS.gene63895:CDS |
| GACCGGAAGAGTTTCAAGGT+TGG | 0.543274 | 5.1:-75962204 | MS.gene63895:CDS |
| ACGACAACAACGATGATGAA+TGG | 0.543622 | 5.1:-75960800 | MS.gene63895:CDS |
| GTTGTGCTAAGAGGAATGAT+TGG | 0.543890 | 5.1:-75962488 | MS.gene63895:CDS |
| GAATGACCGGAAGAGTTTCA+AGG | 0.546477 | 5.1:-75962208 | MS.gene63895:CDS |
| TTCTTGATAATCTTACAAGA+AGG | 0.548649 | 5.1:-75960584 | MS.gene63895:CDS |
| TGAACTGCTAGTGATGAACT+TGG | 0.561399 | 5.1:+75960708 | None:intergenic |
| ACTCAGAGAGGAGTTTCACT+TGG | 0.562269 | 5.1:-75962768 | MS.gene63895:CDS |
| AGGAACCAAGTTTGCAAATG+CGG | 0.569154 | 5.1:-75960682 | MS.gene63895:CDS |
| ATCAGAGGAAGAAGAAGTGG+AGG | 0.583434 | 5.1:+75960617 | None:intergenic |
| AAGCAAGGTTCGTGTAATGG+AGG | 0.588505 | 5.1:-75962384 | MS.gene63895:CDS |
| GCTGAACTTAAGATTAACAC+TGG | 0.590508 | 5.1:-75962344 | MS.gene63895:CDS |
| ATTAAATGAAAAGATGGCGG+AGG | 0.593503 | 5.1:-75962525 | MS.gene63895:CDS |
| TGGAATTGCTGTGAAGAATG+AGG | 0.597222 | 5.1:-75960739 | MS.gene63895:CDS |
| CTACAGAGCAAGGACGCTCA+AGG | 0.598339 | 5.1:-75962077 | MS.gene63895:CDS |
| TTCACTTGGAAAGACTCTCA+AGG | 0.600450 | 5.1:-75962754 | MS.gene63895:CDS |
| TCATCACTAGCAGTTCAACT+AGG | 0.607456 | 5.1:-75960702 | MS.gene63895:CDS |
| AGCAAGGTTCGTGTAATGGA+GGG | 0.616655 | 5.1:-75962383 | MS.gene63895:CDS |
| AAAGAAGAACAATGAACTAG+AGG | 0.622601 | 5.1:-75962654 | MS.gene63895:CDS |
| TCGTGATGAGGTACAAAGCA+AGG | 0.624053 | 5.1:-75962399 | MS.gene63895:CDS |
| CAGTACTCAGCTACAGAGCA+AGG | 0.625882 | 5.1:-75962087 | MS.gene63895:CDS |
| AAGAAACAATGAATCATCAG+AGG | 0.630095 | 5.1:+75960602 | None:intergenic |
| GAAATTAAATGAAAAGATGG+CGG | 0.632116 | 5.1:-75962528 | MS.gene63895:CDS |
| TTGGTAGGTGATGATGACCC+AGG | 0.634407 | 5.1:+75962869 | None:intergenic |
| TTCAACCCAAAATCGAACCT+GGG | 0.641655 | 5.1:-75962886 | MS.gene63895:CDS |
| GGACGGTTGAGATATTACTT+GGG | 0.655123 | 5.1:-75962253 | MS.gene63895:CDS |
| GATGAATGGTGTATGTCTCA+AGG | 0.659079 | 5.1:-75960786 | MS.gene63895:CDS |
| TGGAAACTATAAGTGAGCTG+AGG | 0.672636 | 5.1:-75962292 | MS.gene63895:CDS |
| TGAGGAAAGAAAACGATAAG+CGG | 0.679932 | 5.1:-75962274 | MS.gene63895:CDS |
| AAACACACAAAATCTTAACA+AGG | 0.692804 | 5.1:+75962810 | None:intergenic |
| TAATCTTACAAGAAGGTCTG+CGG | 0.693035 | 5.1:-75960577 | MS.gene63895:CDS |
| GAAAGAAAACGATAAGCGGA+CGG | 0.696193 | 5.1:-75962270 | MS.gene63895:CDS |
| TAGGGATTTGAGACTCAGAG+AGG | 0.711291 | 5.1:-75962780 | MS.gene63895:CDS |
| TGATAGCAATGCTCGTGATG+AGG | 0.725632 | 5.1:-75962411 | MS.gene63895:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTAAATTCAATTTTTTTA+AGG | + | chr5.1:75961460-75961479 | None:intergenic | 10.0% |
| !! | AAAAAGAAACAACTTAAAAA+TGG | + | chr5.1:75962296-75962315 | None:intergenic | 15.0% |
| !! | TATTCAAATGAAAATATAGT+TGG | + | chr5.1:75962475-75962494 | None:intergenic | 15.0% |
| !!! | CAAAATTTTCATATCTTAAT+AGG | + | chr5.1:75961430-75961449 | None:intergenic | 15.0% |
| !!! | TAAATTCAATTTTTTTAAGG+TGG | + | chr5.1:75961457-75961476 | None:intergenic | 15.0% |
| !!! | TAATATATCTCTTTTATGTT+AGG | - | chr5.1:75962568-75962587 | MS.gene63895:CDS | 15.0% |
| !!! | AAGATTTTCACTATATTTCT+TGG | + | chr5.1:75962191-75962210 | None:intergenic | 20.0% |
| !!! | GTTTTTCATTTTTGAGTTTT+GGG | + | chr5.1:75962326-75962345 | None:intergenic | 20.0% |
| !!! | TGAAAATCTTGTTAGATTTT+AGG | - | chr5.1:75962201-75962220 | MS.gene63895:CDS | 20.0% |
| ! | AAAATGTATGAGAAAGGTAA+TGG | - | chr5.1:75960743-75960762 | MS.gene63895:CDS | 25.0% |
| ! | AAACACACAAAATCTTAACA+AGG | + | chr5.1:75960634-75960653 | None:intergenic | 25.0% |
| ! | AGAGAAAAAATGTATGAGAA+AGG | - | chr5.1:75960737-75960756 | MS.gene63895:CDS | 25.0% |
| ! | GAAATTAAATGAAAAGATGG+CGG | - | chr5.1:75960913-75960932 | MS.gene63895:intron | 25.0% |
| ! | GAGGAAATTAAATGAAAAGA+TGG | - | chr5.1:75960910-75960929 | MS.gene63895:intron | 25.0% |
| ! | TCCATAATAACAACTTTCTT+CGG | + | chr5.1:75961971-75961990 | None:intergenic | 25.0% |
| !! | AAGAAAGTTGTTATTATGGA+AGG | - | chr5.1:75961971-75961990 | MS.gene63895:intron | 25.0% |
| !! | AGAAAGTTGTTATTATGGAA+GGG | - | chr5.1:75961972-75961991 | MS.gene63895:intron | 25.0% |
| !! | ATCTCTTTTATGTTAGGTAA+GGG | - | chr5.1:75962574-75962593 | MS.gene63895:CDS | 25.0% |
| !! | CATGAAATGAATGCTATTTA+TGG | - | chr5.1:75962682-75962701 | MS.gene63895:CDS | 25.0% |
| !! | TAAATTAGAGCATGAGATTT+TGG | - | chr5.1:75960976-75960995 | MS.gene63895:intron | 25.0% |
| !! | TATCTCTTTTATGTTAGGTA+AGG | - | chr5.1:75962573-75962592 | MS.gene63895:CDS | 25.0% |
| !! | TCTTTTTACAAAAAGTTCAG+AGG | - | chr5.1:75961211-75961230 | MS.gene63895:intron | 25.0% |
| !! | TGTTAAGATTTTGTGTGTTT+TGG | - | chr5.1:75960634-75960653 | MS.gene63895:CDS | 25.0% |
| !! | TTAGACTCATTTTCTTTTCA+TGG | + | chr5.1:75962166-75962185 | None:intergenic | 25.0% |
| !! | TTCTTGATAATCTTACAAGA+AGG | - | chr5.1:75962857-75962876 | MS.gene63895:CDS | 25.0% |
| !! | TTTCTCTTCAAGTTTATCAT+AGG | + | chr5.1:75962136-75962155 | None:intergenic | 25.0% |
| !!! | AACTCATTTTGGTTTTTCTT+AGG | - | chr5.1:75962366-75962385 | MS.gene63895:CDS | 25.0% |
| !!! | CGTTTTTCATTTTTGAGTTT+TGG | + | chr5.1:75962327-75962346 | None:intergenic | 25.0% |
| !!! | TGAATTAGAGTCTGAAATTT+TGG | - | chr5.1:75960883-75960902 | MS.gene63895:intron | 25.0% |
| AAAGAAGAACAATGAACTAG+AGG | - | chr5.1:75960787-75960806 | MS.gene63895:CDS | 30.0% | |
| AAGAAACAATGAATCATCAG+AGG | + | chr5.1:75962842-75962861 | None:intergenic | 30.0% | |
| AAGATGAACATTCAAAGGAT+AGG | - | chr5.1:75962105-75962124 | MS.gene63895:CDS | 30.0% | |
| AAGCAAAAACATGGAAACTA+AGG | + | chr5.1:75962511-75962530 | None:intergenic | 30.0% | |
| ATAACACTCAAGCAAAAACA+TGG | + | chr5.1:75962520-75962539 | None:intergenic | 30.0% | |
| ATCCTTTGAATGTTCATCTT+GGG | + | chr5.1:75962105-75962124 | None:intergenic | 30.0% | |
| ATCTTAACAAGGTCATGAAT+AGG | + | chr5.1:75960623-75960642 | None:intergenic | 30.0% | |
| ATGAAAAACGAAACAAAAGC+AGG | - | chr5.1:75962337-75962356 | MS.gene63895:CDS | 30.0% | |
| CACGTCAAATCAATTCATTA+TGG | + | chr5.1:75961782-75961801 | None:intergenic | 30.0% | |
| GGAAACAATGAAGAAGAATT+TGG | - | chr5.1:75961129-75961148 | MS.gene63895:intron | 30.0% | |
| GGTTGAAGTTATGAATTTGA+AGG | - | chr5.1:75960808-75960827 | MS.gene63895:CDS | 30.0% | |
| GTCAAATCAATTCATTATGG+CGG | + | chr5.1:75961779-75961798 | None:intergenic | 30.0% | |
| GTGATGTTAGTAACTAGAAT+AGG | - | chr5.1:75961865-75961884 | MS.gene63895:intron | 30.0% | |
| TATAACACATTTCCTACTCT+TGG | + | chr5.1:75961483-75961502 | None:intergenic | 30.0% | |
| TATCCTTTGAATGTTCATCT+TGG | + | chr5.1:75962106-75962125 | None:intergenic | 30.0% | |
| TCAAATCAATTCATTATGGC+GGG | + | chr5.1:75961778-75961797 | None:intergenic | 30.0% | |
| TCTTAGGTAACATGGAATAA+AGG | + | chr5.1:75961641-75961660 | None:intergenic | 30.0% | |
| TGAGGAAGTTGAAGAAAAAA+TGG | - | chr5.1:75961002-75961021 | MS.gene63895:intron | 30.0% | |
| TGGATAAGAATGGTTATGTA+GGG | - | chr5.1:75962037-75962056 | MS.gene63895:intron | 30.0% | |
| TTGGATAAGAATGGTTATGT+AGG | - | chr5.1:75962036-75962055 | MS.gene63895:intron | 30.0% | |
| ! | ACTCATTTTCTTTTCATGGA+GGG | + | chr5.1:75962162-75962181 | None:intergenic | 30.0% |
| ! | GTGTTATATTTTCTTTGAGC+TGG | - | chr5.1:75961495-75961514 | MS.gene63895:intron | 30.0% |
| ! | TTGAATTTAAAGCCAAGAGT+AGG | - | chr5.1:75961468-75961487 | MS.gene63895:intron | 30.0% |
| !! | GAAAGAGTATTGGATAAGAA+TGG | - | chr5.1:75962027-75962046 | MS.gene63895:intron | 30.0% |
| !! | TACTAATTTTCAAGAGAACC+AGG | - | chr5.1:75961267-75961286 | MS.gene63895:intron | 30.0% |
| !! | TATCTTCAAGTTTGTTGCTA+GGG | + | chr5.1:75960598-75960617 | None:intergenic | 30.0% |
| !! | TGAATTGATTTGACGTGTAT+TGG | - | chr5.1:75961785-75961804 | MS.gene63895:intron | 30.0% |
| !! | TTATCTTCAAGTTTGTTGCT+AGG | + | chr5.1:75960599-75960618 | None:intergenic | 30.0% |
| !! | TTGTAGAACAAACTTGTTGA+GGG | - | chr5.1:75961813-75961832 | MS.gene63895:intron | 30.0% |
| AAAAAGTTCAGAGGAATGAC+CGG | - | chr5.1:75961220-75961239 | MS.gene63895:intron | 35.0% | |
| AACAACACTCATGACACAAT+TGG | + | chr5.1:75961920-75961939 | None:intergenic | 35.0% | |
| AACCCAAGATGAACATTCAA+AGG | - | chr5.1:75962100-75962119 | MS.gene63895:CDS | 35.0% | |
| ACATGGAATAAAGGTAAAGC+CGG | + | chr5.1:75961632-75961651 | None:intergenic | 35.0% | |
| CAAATCAATTCATTATGGCG+GGG | + | chr5.1:75961777-75961796 | None:intergenic | 35.0% | |
| CTTGTTTGTCTTAGGTAACA+TGG | + | chr5.1:75961649-75961668 | None:intergenic | 35.0% | |
| GATTAACACTGGTGAATTGA+AGG | - | chr5.1:75961108-75961127 | MS.gene63895:intron | 35.0% | |
| GCTGAACTTAAGATTAACAC+TGG | - | chr5.1:75961097-75961116 | MS.gene63895:intron | 35.0% | |
| GGAAAATCACATACAGCTAA+AGG | + | chr5.1:75961683-75961702 | None:intergenic | 35.0% | |
| GGATAAGAATGGTTATGTAG+GGG | - | chr5.1:75962038-75962057 | MS.gene63895:intron | 35.0% | |
| TAATCTTACAAGAAGGTCTG+CGG | - | chr5.1:75962864-75962883 | MS.gene63895:CDS | 35.0% | |
| TCTTAGGTAAACATGATCAC+AGG | - | chr5.1:75962382-75962401 | MS.gene63895:CDS | 35.0% | |
| TGAGGAAAGAAAACGATAAG+CGG | - | chr5.1:75961167-75961186 | MS.gene63895:intron | 35.0% | |
| TGCTTGAGTGTTATCATGTT+TGG | - | chr5.1:75962526-75962545 | MS.gene63895:CDS | 35.0% | |
| ! | AATGCTGCTTCTATTTCCAT+TGG | + | chr5.1:75961704-75961723 | None:intergenic | 35.0% |
| ! | AGCTGTATGTGATTTTCCAA+TGG | - | chr5.1:75961685-75961704 | MS.gene63895:intron | 35.0% |
| ! | ATTAAATGAAAAGATGGCGG+AGG | - | chr5.1:75960916-75960935 | MS.gene63895:intron | 35.0% |
| ! | CTCAAACAAATCTTGGTTCT+GGG | - | chr5.1:75961741-75961760 | MS.gene63895:intron | 35.0% |
| ! | GACTCATTTTCTTTTCATGG+AGG | + | chr5.1:75962163-75962182 | None:intergenic | 35.0% |
| ! | GCAGGTAACAAAACTCATTT+TGG | - | chr5.1:75962355-75962374 | MS.gene63895:CDS | 35.0% |
| ! | GCCGAAGAAAGTTGTTATTA+TGG | - | chr5.1:75961967-75961986 | MS.gene63895:intron | 35.0% |
| ! | GTTGATTTCGTTGCATACTT+TGG | + | chr5.1:75962083-75962102 | None:intergenic | 35.0% |
| !! | AATGAACTTGTTGTGCTAAG+AGG | - | chr5.1:75960944-75960963 | MS.gene63895:intron | 35.0% |
| !! | GTTGTAGAACAAACTTGTTG+AGG | - | chr5.1:75961812-75961831 | MS.gene63895:intron | 35.0% |
| !! | TCAAACAAATCTTGGTTCTG+GGG | - | chr5.1:75961742-75961761 | MS.gene63895:intron | 35.0% |
| !! | TTGAAGGAGAAACTTGTTGA+TGG | - | chr5.1:75960824-75960843 | MS.gene63895:CDS | 35.0% |
| !!! | AGTCTGAAATTTTGGAGTTG+AGG | - | chr5.1:75960891-75960910 | MS.gene63895:intron | 35.0% |
| !!! | TTTGTGTGTTTTGGAGAGTA+GGG | - | chr5.1:75960643-75960662 | MS.gene63895:CDS | 35.0% |
| !!! | TTTTGTGTGTTTTGGAGAGT+AGG | - | chr5.1:75960642-75960661 | MS.gene63895:CDS | 35.0% |
| ACAAAGCAAGGTTCGTGTAA+TGG | - | chr5.1:75961054-75961073 | MS.gene63895:intron | 40.0% | |
| ACGACAACAACGATGATGAA+TGG | - | chr5.1:75962641-75962660 | MS.gene63895:CDS | 40.0% | |
| AGGAACCAAGTTTGCAAATG+CGG | - | chr5.1:75962759-75962778 | MS.gene63895:CDS | 40.0% | |
| ATAGAAACTCGACTAGCACT+AGG | - | chr5.1:75961557-75961576 | MS.gene63895:intron | 40.0% | |
| ATCACATACAGCTAAAGGAG+AGG | + | chr5.1:75961678-75961697 | None:intergenic | 40.0% | |
| ATCATCAGAGGAAGAAGAAG+TGG | + | chr5.1:75962830-75962849 | None:intergenic | 40.0% | |
| ATCCAACCTTGAAACTCTTC+CGG | + | chr5.1:75961242-75961261 | None:intergenic | 40.0% | |
| ATTCAACCCAAAATCGAACC+TGG | - | chr5.1:75960554-75960573 | MS.gene63895:CDS | 40.0% | |
| CATCGTTGTTGTCGTTATCA+AGG | + | chr5.1:75962636-75962655 | None:intergenic | 40.0% | |
| CATGGAATAAAGGTAAAGCC+GGG | + | chr5.1:75961631-75961650 | None:intergenic | 40.0% | |
| CCTCAAACAAATCTTGGTTC+TGG | - | chr5.1:75961740-75961759 | MS.gene63895:intron | 40.0% | |
| CGACTAGCACTAGGATATTA+TGG | - | chr5.1:75961566-75961585 | MS.gene63895:intron | 40.0% | |
| GAAAGAAAACGATAAGCGGA+CGG | - | chr5.1:75961171-75961190 | MS.gene63895:intron | 40.0% | |
| GATGAATGGTGTATGTCTCA+AGG | - | chr5.1:75962655-75962674 | MS.gene63895:CDS | 40.0% | |
| GGACGGTTGAGATATTACTT+GGG | - | chr5.1:75961188-75961207 | MS.gene63895:intron | 40.0% | |
| GGAGGGTGATAAGAATGATT+TGG | - | chr5.1:75961075-75961094 | MS.gene63895:intron | 40.0% | |
| GGGAACAGTGAACATGAAAA+AGG | - | chr5.1:75962594-75962613 | MS.gene63895:CDS | 40.0% | |
| GTGGAACCTCAAACAAATCT+TGG | - | chr5.1:75961734-75961753 | MS.gene63895:intron | 40.0% | |
| GTTAACCGCATTTGCAAACT+TGG | + | chr5.1:75962767-75962786 | None:intergenic | 40.0% | |
| GTTATGTAGGGGAGGTTAAA+TGG | - | chr5.1:75962049-75962068 | MS.gene63895:intron | 40.0% | |
| GTTATTATGGAAGGGTCTAG+TGG | - | chr5.1:75961980-75961999 | MS.gene63895:intron | 40.0% | |
| GTTGTGCTAAGAGGAATGAT+TGG | - | chr5.1:75960953-75960972 | MS.gene63895:intron | 40.0% | |
| TAAGAATGGTTATGTAGGGG+AGG | - | chr5.1:75962041-75962060 | MS.gene63895:intron | 40.0% | |
| TCATCACTAGCAGTTCAACT+AGG | - | chr5.1:75962739-75962758 | MS.gene63895:CDS | 40.0% | |
| TGAACTGCTAGTGATGAACT+TGG | + | chr5.1:75962736-75962755 | None:intergenic | 40.0% | |
| TGGAAACTATAAGTGAGCTG+AGG | - | chr5.1:75961149-75961168 | MS.gene63895:intron | 40.0% | |
| TGGAATTGCTGTGAAGAATG+AGG | - | chr5.1:75962702-75962721 | MS.gene63895:CDS | 40.0% | |
| TTCAACCCAAAATCGAACCT+GGG | - | chr5.1:75960555-75960574 | MS.gene63895:CDS | 40.0% | |
| TTCACTTGGAAAGACTCTCA+AGG | - | chr5.1:75960687-75960706 | MS.gene63895:CDS | 40.0% | |
| ! | AGTGTTGTTCAAAGGTTGGA+TGG | - | chr5.1:75961931-75961950 | MS.gene63895:intron | 40.0% |
| ! | CATGAGTGTTGTTCAAAGGT+TGG | - | chr5.1:75961927-75961946 | MS.gene63895:intron | 40.0% |
| ! | CCAGAACCAAGATTTGTTTG+AGG | + | chr5.1:75961743-75961762 | None:intergenic | 40.0% |
| ! | GTGTCATGAGTGTTGTTCAA+AGG | - | chr5.1:75961923-75961942 | MS.gene63895:intron | 40.0% |
| !! | GGCAATAGCTTGTTTGTCTT+AGG | + | chr5.1:75961657-75961676 | None:intergenic | 40.0% |
| !! | TTCAAGTTTGTTGCTAGGGT+TGG | + | chr5.1:75960594-75960613 | None:intergenic | 40.0% |
| !! | TTTTCAAGAGAACCAGGAAG+AGG | - | chr5.1:75961273-75961292 | MS.gene63895:intron | 40.0% |
| !!! | AGCATGAGATTTTGGAGTTG+AGG | - | chr5.1:75960984-75961003 | MS.gene63895:intron | 40.0% |
| AAGCAAGGTTCGTGTAATGG+AGG | - | chr5.1:75961057-75961076 | MS.gene63895:intron | 45.0% | |
| AATAAAGGTAAAGCCGGGAG+AGG | + | chr5.1:75961626-75961645 | None:intergenic | 45.0% | |
| ACTCAGAGAGGAGTTTCACT+TGG | - | chr5.1:75960673-75960692 | MS.gene63895:CDS | 45.0% | |
| ATCAGAGGAAGAAGAAGTGG+AGG | + | chr5.1:75962827-75962846 | None:intergenic | 45.0% | |
| CGGACGGTTGAGATATTACT+TGG | - | chr5.1:75961187-75961206 | MS.gene63895:intron | 45.0% | |
| GAATGACCGGAAGAGTTTCA+AGG | - | chr5.1:75961233-75961252 | MS.gene63895:intron | 45.0% | |
| GCTAGTGATGAACTTGGAGT+TGG | + | chr5.1:75962730-75962749 | None:intergenic | 45.0% | |
| GGATTGTCCTAGAAATGTCG+CGG | - | chr5.1:75962446-75962465 | MS.gene63895:CDS | 45.0% | |
| GTTGGATGGTATGAGCAAGA+AGG | - | chr5.1:75961945-75961964 | MS.gene63895:intron | 45.0% | |
| TCAAGGTGCATCATCAGGTA+CGG | - | chr5.1:75961381-75961400 | MS.gene63895:intron | 45.0% | |
| TCGTGATGAGGTACAAAGCA+AGG | - | chr5.1:75961042-75961061 | MS.gene63895:intron | 45.0% | |
| TGATAGCAATGCTCGTGATG+AGG | - | chr5.1:75961030-75961049 | MS.gene63895:intron | 45.0% | |
| ! | AGCAAGGTTCGTGTAATGGA+GGG | - | chr5.1:75961058-75961077 | MS.gene63895:intron | 45.0% |
| ! | GATGACCCAGGTTCGATTTT+GGG | + | chr5.1:75960563-75960582 | None:intergenic | 45.0% |
| ! | GTAGCGTCGAGAAAGAGTAT+TGG | - | chr5.1:75962017-75962036 | MS.gene63895:intron | 45.0% |
| ! | TAGGGATTTGAGACTCAGAG+AGG | - | chr5.1:75960661-75960680 | MS.gene63895:CDS | 45.0% |
| ! | TGATGACCCAGGTTCGATTT+TGG | + | chr5.1:75960564-75960583 | None:intergenic | 45.0% |
| !! | AGCAGCATTGACAAGAACTG+TGG | - | chr5.1:75961715-75961734 | MS.gene63895:intron | 45.0% |
| !! | AGTTTGTTGCTAGGGTTGGT+AGG | + | chr5.1:75960590-75960609 | None:intergenic | 45.0% |
| !!! | TCATATATATATATATATTT+TGG | - | chr5.1:75962425-75962444 | MS.gene63895:CDS | 5.0% |
| AAGCCTGTTCATTCCTCTCC+CGG | - | chr5.1:75961610-75961629 | MS.gene63895:intron | 50.0% | |
| CAGTACTCAGCTACAGAGCA+AGG | - | chr5.1:75961354-75961373 | MS.gene63895:intron | 50.0% | |
| CGTCAGAAACATCCTCTTCC+TGG | + | chr5.1:75961288-75961307 | None:intergenic | 50.0% | |
| CTTGCTCTGTAGCTGAGTAC+TGG | + | chr5.1:75961356-75961375 | None:intergenic | 50.0% | |
| GACCGGAAGAGTTTCAAGGT+TGG | - | chr5.1:75961237-75961256 | MS.gene63895:intron | 50.0% | |
| GTAGATGCTCATCGCACTCT+TGG | - | chr5.1:75961322-75961341 | MS.gene63895:intron | 50.0% | |
| TTGGTTGCCGCGACATTTCT+AGG | + | chr5.1:75962456-75962475 | None:intergenic | 50.0% | |
| ! | TTGGTAGGTGATGATGACCC+AGG | + | chr5.1:75960575-75960594 | None:intergenic | 50.0% |
| AAGCCGGGAGAGGAATGAAC+AGG | + | chr5.1:75961616-75961635 | None:intergenic | 55.0% | |
| CTACAGAGCAAGGACGCTCA+AGG | - | chr5.1:75961364-75961383 | MS.gene63895:intron | 55.0% | |
| GACGCTCAAGGTGCATCATC+AGG | - | chr5.1:75961376-75961395 | MS.gene63895:intron | 55.0% | |
| GGGAGAGGAATGAACAGGCT+TGG | + | chr5.1:75961611-75961630 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 75960548 | 75962915 | 75960548 | ID=MS.gene63895 |
| chr5.1 | mRNA | 75960548 | 75962915 | 75960548 | ID=MS.gene63895.t1;Parent=MS.gene63895 |
| chr5.1 | exon | 75962066 | 75962915 | 75962066 | ID=MS.gene63895.t1.exon1;Parent=MS.gene63895.t1 |
| chr5.1 | CDS | 75962066 | 75962915 | 75962066 | ID=cds.MS.gene63895.t1;Parent=MS.gene63895.t1 |
| chr5.1 | exon | 75960548 | 75960873 | 75960548 | ID=MS.gene63895.t1.exon2;Parent=MS.gene63895.t1 |
| chr5.1 | CDS | 75960548 | 75960873 | 75960548 | ID=cds.MS.gene63895.t1;Parent=MS.gene63895.t1 |
| Gene Sequence |
| Protein sequence |
