Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63982.t1 | XP_003589390.1 | 96.2 | 555 | 19 | 1 | 1 | 553 | 1 | 555 | 1.40E-270 | 941.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63982.t1 | Q04088 | 40.0 | 170 | 98 | 1 | 340 | 509 | 156 | 321 | 1.8e-16 | 89.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63982.t1 | G7I6G4 | 96.2 | 555 | 19 | 1 | 1 | 553 | 1 | 555 | 1.0e-270 | 941.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63982.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057174 | MS.gene63982 | 0.822186 | 2.71E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63982.t1 | MTR_1g023690 | 97.117 | 555 | 14 | 1 | 1 | 553 | 1 | 555 | 0.0 | 1099 |
| MS.gene63982.t1 | MTR_4g072090 | 49.072 | 485 | 179 | 18 | 42 | 504 | 41 | 479 | 2.55e-109 | 336 |
| MS.gene63982.t1 | MTR_4g072090 | 48.444 | 450 | 164 | 18 | 42 | 469 | 41 | 444 | 5.21e-96 | 300 |
| MS.gene63982.t1 | MTR_6g034945 | 47.964 | 221 | 94 | 8 | 301 | 513 | 74 | 281 | 4.10e-44 | 159 |
| MS.gene63982.t1 | MTR_2g099050 | 60.000 | 140 | 53 | 2 | 340 | 477 | 175 | 313 | 3.50e-41 | 154 |
| MS.gene63982.t1 | MTR_3g094020 | 54.777 | 157 | 67 | 2 | 368 | 521 | 91 | 246 | 2.34e-40 | 149 |
| MS.gene63982.t1 | MTR_5g075390 | 56.944 | 144 | 52 | 2 | 340 | 483 | 124 | 257 | 2.93e-39 | 147 |
| MS.gene63982.t1 | MTR_3g467120 | 52.486 | 181 | 78 | 4 | 340 | 518 | 138 | 312 | 3.72e-39 | 147 |
| MS.gene63982.t1 | MTR_2g090900 | 51.020 | 98 | 44 | 2 | 384 | 479 | 190 | 285 | 2.84e-18 | 86.7 |
| MS.gene63982.t1 | MTR_4g079500 | 50.000 | 98 | 45 | 2 | 384 | 479 | 193 | 288 | 3.29e-18 | 86.3 |
| MS.gene63982.t1 | MTR_2g090900 | 51.020 | 98 | 44 | 2 | 384 | 479 | 190 | 285 | 3.34e-18 | 86.7 |
| MS.gene63982.t1 | MTR_0405s0060 | 65.517 | 58 | 20 | 0 | 359 | 416 | 98 | 155 | 9.07e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63982.t1 | AT4G38900 | 44.465 | 533 | 202 | 24 | 19 | 505 | 27 | 511 | 8.23e-99 | 310 |
| MS.gene63982.t1 | AT4G38900 | 44.465 | 533 | 202 | 24 | 19 | 505 | 27 | 511 | 8.23e-99 | 310 |
| MS.gene63982.t1 | AT4G38900 | 43.970 | 539 | 202 | 25 | 19 | 505 | 27 | 517 | 5.86e-96 | 303 |
| MS.gene63982.t1 | AT2G21230 | 41.649 | 461 | 207 | 15 | 79 | 510 | 74 | 501 | 1.05e-79 | 259 |
| MS.gene63982.t1 | AT2G21230 | 41.649 | 461 | 207 | 15 | 79 | 510 | 74 | 501 | 1.05e-79 | 259 |
| MS.gene63982.t1 | AT2G21230 | 40.899 | 467 | 208 | 16 | 79 | 510 | 74 | 507 | 2.26e-76 | 251 |
| MS.gene63982.t1 | AT2G21230 | 42.195 | 410 | 181 | 14 | 79 | 465 | 74 | 450 | 6.17e-72 | 237 |
| MS.gene63982.t1 | AT1G43700 | 47.549 | 204 | 87 | 6 | 300 | 483 | 89 | 292 | 3.28e-42 | 155 |
| MS.gene63982.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 340 | 509 | 156 | 321 | 6.32e-41 | 152 |
| MS.gene63982.t1 | AT2G40620 | 49.505 | 202 | 77 | 4 | 337 | 525 | 112 | 301 | 1.69e-40 | 150 |
| MS.gene63982.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 340 | 509 | 156 | 321 | 2.16e-40 | 151 |
| MS.gene63982.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 340 | 509 | 156 | 321 | 2.16e-40 | 151 |
| MS.gene63982.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 340 | 509 | 156 | 321 | 2.16e-40 | 151 |
| MS.gene63982.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 340 | 509 | 156 | 321 | 2.16e-40 | 151 |
| MS.gene63982.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 340 | 509 | 156 | 321 | 2.16e-40 | 151 |
| MS.gene63982.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 340 | 509 | 156 | 321 | 2.16e-40 | 151 |
| MS.gene63982.t1 | AT1G06070 | 56.494 | 154 | 56 | 3 | 334 | 477 | 150 | 302 | 7.12e-40 | 150 |
| MS.gene63982.t1 | AT1G06850 | 51.634 | 153 | 72 | 1 | 356 | 506 | 117 | 269 | 3.80e-38 | 143 |
| MS.gene63982.t1 | AT2G13150 | 36.788 | 193 | 111 | 5 | 298 | 488 | 71 | 254 | 1.18e-28 | 115 |
| MS.gene63982.t1 | AT2G12940 | 35.676 | 185 | 110 | 4 | 296 | 480 | 68 | 243 | 5.67e-28 | 114 |
| MS.gene63982.t1 | AT2G12900 | 38.760 | 129 | 71 | 1 | 357 | 477 | 80 | 208 | 3.78e-23 | 99.8 |
| MS.gene63982.t1 | AT1G06850 | 60.241 | 83 | 31 | 1 | 356 | 436 | 117 | 199 | 1.47e-21 | 94.0 |
| MS.gene63982.t1 | AT3G58120 | 51.546 | 97 | 43 | 2 | 385 | 479 | 202 | 296 | 7.46e-19 | 88.2 |
| MS.gene63982.t1 | AT2G42380 | 50.515 | 97 | 44 | 2 | 385 | 479 | 186 | 280 | 3.43e-18 | 86.3 |
| MS.gene63982.t1 | AT2G42380 | 51.190 | 84 | 37 | 2 | 385 | 466 | 186 | 267 | 1.00e-15 | 78.2 |
| MS.gene63982.t1 | AT3G58120 | 52.439 | 82 | 35 | 2 | 385 | 464 | 202 | 281 | 2.21e-15 | 77.4 |
| MS.gene63982.t1 | AT2G21235 | 32.995 | 197 | 90 | 5 | 382 | 542 | 356 | 546 | 4.76e-15 | 78.6 |
| MS.gene63982.t1 | AT2G42380 | 46.392 | 97 | 37 | 3 | 385 | 479 | 186 | 269 | 1.52e-12 | 69.3 |
| MS.gene63982.t1 | AT1G58110 | 43.158 | 95 | 49 | 1 | 383 | 477 | 232 | 321 | 8.30e-11 | 64.3 |
| MS.gene63982.t1 | AT1G58110 | 43.158 | 95 | 49 | 1 | 383 | 477 | 232 | 321 | 8.30e-11 | 64.3 |
Find 155 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACTCCATGCTGATTTC+TGG | 0.095023 | 1.4:+1138593 | None:intergenic |
| TGAATTCTCTTCTAGGATTT+TGG | 0.159961 | 1.4:-1138383 | MS.gene63982:intron |
| TTAGGTGATAAACTGGTATT+AGG | 0.185148 | 1.4:+1139484 | None:intergenic |
| ATTTGATTAATTTGATTAAT+AGG | 0.196865 | 1.4:+1139565 | None:intergenic |
| GTTTAGTGCTTACATGAATT+TGG | 0.199161 | 1.4:-1138945 | MS.gene63982:CDS |
| GATCGTCGGAATTTGGTTTC+TGG | 0.214069 | 1.4:-1139094 | MS.gene63982:CDS |
| ATGGAGGATGGCTTGGGTTT+TGG | 0.216775 | 1.4:-1139283 | MS.gene63982:CDS |
| TCTAGCAGTGATTCGCCTTT+AGG | 0.230921 | 1.4:-1139178 | MS.gene63982:CDS |
| GAGATTGTGGAGGCATAAAT+TGG | 0.250520 | 1.4:+1139443 | None:intergenic |
| CATTGTCTTCCGCCTCTTAA+AGG | 0.258260 | 1.4:-1139211 | MS.gene63982:CDS |
| GGCATAGGATTCAATTGAAT+TGG | 0.265815 | 1.4:+1139586 | None:intergenic |
| GATGATACGCACCTGTAATT+TGG | 0.269495 | 1.4:+1138246 | None:intergenic |
| CCTGAAAATCACAAAAGTTC+TGG | 0.271067 | 1.4:-1139535 | MS.gene63982:CDS |
| GTCTGCCCTCTCAGGTCTTA+TGG | 0.290824 | 1.4:-1136972 | MS.gene63982:CDS |
| AATCACAAAAGTTCTGGTTT+TGG | 0.303027 | 1.4:-1139529 | MS.gene63982:CDS |
| TGTCAGTGATCGTCGGAATT+TGG | 0.310184 | 1.4:-1139101 | MS.gene63982:CDS |
| TTGGCTGCTGATGCTGCGCC+TGG | 0.311111 | 1.4:+1136918 | None:intergenic |
| CTAGCAGTGATTCGCCTTTA+GGG | 0.324253 | 1.4:-1139177 | MS.gene63982:CDS |
| GATGAAATACATTTCTGAAT+TGG | 0.329479 | 1.4:-1138323 | MS.gene63982:CDS |
| GACTGTGTTGATGGGTTTAG+AGG | 0.332730 | 1.4:-1139019 | MS.gene63982:CDS |
| TACTCAGTTTACCAAATTAC+AGG | 0.335238 | 1.4:-1138257 | MS.gene63982:intron |
| GATAAACTGGTATTAGGGTT+AGG | 0.348576 | 1.4:+1139490 | None:intergenic |
| TATTAATCAAATTAATCAAA+TGG | 0.352253 | 1.4:-1139563 | MS.gene63982:CDS |
| CCAGAAATCAGCATGGAGTT+TGG | 0.352422 | 1.4:-1138593 | MS.gene63982:CDS |
| CAAATTGAGGCTTCAATCCT+TGG | 0.361103 | 1.4:-1138070 | MS.gene63982:CDS |
| TTCGAACCCGATTCCGAAAA+GGG | 0.372318 | 1.4:+1139316 | None:intergenic |
| GGAGTCAAGAGGAGTTCTAA+TGG | 0.374634 | 1.4:-1138764 | MS.gene63982:CDS |
| GCATAGGATTCAATTGAATT+GGG | 0.375101 | 1.4:+1139587 | None:intergenic |
| TAGTTTCTGTCTGAAGAGTT+TGG | 0.377481 | 1.4:+1138290 | None:intergenic |
| GGGTTCGAAAGATGTTTCTA+TGG | 0.378171 | 1.4:-1139302 | MS.gene63982:CDS |
| GTTTCTATGGAGGATGGCTT+GGG | 0.385643 | 1.4:-1139289 | MS.gene63982:CDS |
| TGAAAATTTCTAAGCTGGTT+TGG | 0.387245 | 1.4:+1136899 | None:intergenic |
| TGATGGTTTAGGTGATAAAC+TGG | 0.388036 | 1.4:+1139477 | None:intergenic |
| CACAATCTCAAACTCATTCC+AGG | 0.390554 | 1.4:-1139429 | MS.gene63982:CDS |
| AAGGATAGGGACTGTGTTGA+TGG | 0.391348 | 1.4:-1139028 | MS.gene63982:CDS |
| GGATAAGGAGATGATGGTTT+AGG | 0.394908 | 1.4:+1139466 | None:intergenic |
| GCCGATTCAGTTGGTGTTGA+AGG | 0.397394 | 1.4:-1139047 | MS.gene63982:CDS |
| GGGTTTGAACTTACATGATA+AGG | 0.398012 | 1.4:+1139337 | None:intergenic |
| CGTGTAAATGTGAAAGGAAT+AGG | 0.399807 | 1.4:-1138830 | MS.gene63982:CDS |
| TTCTTACCTCTTTGCACGCT+TGG | 0.401343 | 1.4:+1138493 | None:intergenic |
| ACAGGAGATGAAGAAAATAA+TGG | 0.405735 | 1.4:-1138552 | MS.gene63982:CDS |
| TCTTACCTCTTTGCACGCTT+GGG | 0.408680 | 1.4:+1138494 | None:intergenic |
| GGTTTGAACTTACATGATAA+GGG | 0.413641 | 1.4:+1139338 | None:intergenic |
| AGATTGTGGAGGCATAAATT+GGG | 0.419988 | 1.4:+1139444 | None:intergenic |
| TATTAACCAACAAATGTTCC+AGG | 0.420194 | 1.4:-1136936 | MS.gene63982:CDS |
| AGAGAATGATGGAGCTGAAA+TGG | 0.422683 | 1.4:-1138975 | MS.gene63982:CDS |
| TGATTCGCCTTTAGGGATAT+CGG | 0.426575 | 1.4:-1139170 | MS.gene63982:CDS |
| ATTGTCTTCCGCCTCTTAAA+GGG | 0.429995 | 1.4:-1139210 | MS.gene63982:CDS |
| ATTAATCAAATTAATCAAAT+GGG | 0.434941 | 1.4:-1139562 | MS.gene63982:CDS |
| TTTCGAACCCGATTCCGAAA+AGG | 0.436816 | 1.4:+1139315 | None:intergenic |
| CATAAGCTTCCTCCTTTACA+AGG | 0.439342 | 1.4:-1138665 | MS.gene63982:CDS |
| TGCCATTCTGATGCTTCGAT+TGG | 0.443341 | 1.4:+1136804 | None:intergenic |
| TTTAGAGGAGAGAGTTTCGA+TGG | 0.447218 | 1.4:-1139004 | MS.gene63982:CDS |
| GCTGCGCCTGGAACATTTGT+TGG | 0.447847 | 1.4:+1136930 | None:intergenic |
| GAGGAGAGAGTTTCGATGGG+AGG | 0.451918 | 1.4:-1139000 | MS.gene63982:CDS |
| TGTTTCTATGGAGGATGGCT+TGG | 0.451973 | 1.4:-1139290 | MS.gene63982:CDS |
| GGCGGAGAGTCTGCCCTCTC+AGG | 0.456637 | 1.4:-1136980 | MS.gene63982:CDS |
| GCCGCAAAACAGCGTCTCTC+AGG | 0.456659 | 1.4:-1136876 | MS.gene63982:CDS |
| TAGGTGATAAACTGGTATTA+GGG | 0.460276 | 1.4:+1139485 | None:intergenic |
| GGAGGCATAAATTGGGGATA+AGG | 0.460553 | 1.4:+1139451 | None:intergenic |
| GCGGCTGAAAATTTCTAAGC+TGG | 0.460758 | 1.4:+1136894 | None:intergenic |
| TTCAACCGTCTTCGAACCAC+TGG | 0.466140 | 1.4:+1138877 | None:intergenic |
| TCCTTCAACACCAACTGAAT+CGG | 0.468786 | 1.4:+1139046 | None:intergenic |
| CAGTTGGGACTGTTGTTCCA+AGG | 0.474662 | 1.4:+1138053 | None:intergenic |
| CTACCATCCATTGAATTGCT+AGG | 0.480737 | 1.4:+1138623 | None:intergenic |
| AGACTTTGAATGGCGAAGTC+AGG | 0.481464 | 1.4:-1137030 | MS.gene63982:CDS |
| AATTGGGGATAAGGAGATGA+TGG | 0.483937 | 1.4:+1139460 | None:intergenic |
| ATAAACTGGTATTAGGGTTA+GGG | 0.484174 | 1.4:+1139491 | None:intergenic |
| TGTTAACTCTGTGCCTCAGC+TGG | 0.484237 | 1.4:-1139143 | MS.gene63982:CDS |
| ATCAGCATGGAGTTTGGAAA+TGG | 0.484264 | 1.4:-1138587 | MS.gene63982:CDS |
| TTGCTAGGCGAGTGTTGACC+AGG | 0.493979 | 1.4:+1138638 | None:intergenic |
| TCAGCTGGTGACGTCTCAGC+TGG | 0.501726 | 1.4:-1139128 | MS.gene63982:CDS |
| ACTCAATGGTGGCAAAGAAA+AGG | 0.504888 | 1.4:+1139372 | None:intergenic |
| TTCAGTTGGTGTTGAAGGAT+AGG | 0.505836 | 1.4:-1139042 | MS.gene63982:CDS |
| ATGCATACCATCTTTCAGTT+GGG | 0.510205 | 1.4:+1138038 | None:intergenic |
| ACATAGGAGAAGTTACTCAT+TGG | 0.510819 | 1.4:-1138720 | MS.gene63982:CDS |
| TTAGAGGAGAGAGTTTCGAT+GGG | 0.511374 | 1.4:-1139003 | MS.gene63982:CDS |
| CTGGAATGAGTTTGAGATTG+TGG | 0.518906 | 1.4:+1139430 | None:intergenic |
| GGGGAAGGGGAAGGACTCAA+TGG | 0.522243 | 1.4:+1139358 | None:intergenic |
| TGTGAAAGGAATAGGTGCTA+AGG | 0.524307 | 1.4:-1138822 | MS.gene63982:CDS |
| CATTTCTGAATTGGAGCAGA+AGG | 0.526293 | 1.4:-1138314 | MS.gene63982:CDS |
| AGACACACTGTAGCAGAACT+AGG | 0.526862 | 1.4:-1137001 | MS.gene63982:CDS |
| GGGTGCGAGTTCAAGCTGTT+CGG | 0.530451 | 1.4:-1138801 | MS.gene63982:CDS |
| GGTTAGGCGAAGGTGCATGA+TGG | 0.530722 | 1.4:+1139257 | None:intergenic |
| CATGCATACCATCTTTCAGT+TGG | 0.532496 | 1.4:+1138037 | None:intergenic |
| TCAGTTGGTGTTGAAGGATA+GGG | 0.533089 | 1.4:-1139041 | MS.gene63982:CDS |
| GACCGCCTATGCCCTTTAAG+AGG | 0.533645 | 1.4:+1139199 | None:intergenic |
| CATAGGATTCAATTGAATTG+GGG | 0.534542 | 1.4:+1139588 | None:intergenic |
| GTATTAGGGTTAGGGTATGA+AGG | 0.535303 | 1.4:+1139499 | None:intergenic |
| ACAAATTCCGATATCCCTAA+AGG | 0.537853 | 1.4:+1139163 | None:intergenic |
| GTTAGGCGAAGGTGCATGAT+GGG | 0.538166 | 1.4:+1139258 | None:intergenic |
| AAAGATGTTTCTATGGAGGA+TGG | 0.538942 | 1.4:-1139295 | MS.gene63982:CDS |
| AACTTACATGATAAGGGGAA+GGG | 0.539958 | 1.4:+1139344 | None:intergenic |
| CGCGGTCATGCTGTTCAACA+TGG | 0.545730 | 1.4:-1139235 | MS.gene63982:CDS |
| ACACTCGCCTAGCAATTCAA+TGG | 0.545737 | 1.4:-1138630 | MS.gene63982:CDS |
| CGTCGGAATTTGGTTTCTGG+AGG | 0.548514 | 1.4:-1139091 | MS.gene63982:CDS |
| TGAATTAATGCATGAACGAA+TGG | 0.549104 | 1.4:-1139656 | None:intergenic |
| TTAATTTGATTAATAGGCAT+AGG | 0.556871 | 1.4:+1139571 | None:intergenic |
| GAAGGGGAAGGACTCAATGG+TGG | 0.557252 | 1.4:+1139361 | None:intergenic |
| CCTCCTTTACAAGGTCGACC+TGG | 0.557576 | 1.4:-1138656 | MS.gene63982:CDS |
| CAACAGTCCCAACTGAAAGA+TGG | 0.557734 | 1.4:-1138045 | MS.gene63982:intron |
| TCAATCAGCTGCTCGCTCAA+AGG | 0.558910 | 1.4:-1138353 | MS.gene63982:CDS |
| ACTTCTCCTATGTCGACCAC+TGG | 0.561188 | 1.4:+1138730 | None:intergenic |
| GAACTTACATGATAAGGGGA+AGG | 0.561647 | 1.4:+1139343 | None:intergenic |
| ACTTACATGATAAGGGGAAG+GGG | 0.562315 | 1.4:+1139345 | None:intergenic |
| AGGATAGGGACTGTGTTGAT+GGG | 0.565060 | 1.4:-1139027 | MS.gene63982:CDS |
| AGAGGAGGGAAGGAGTCAAG+AGG | 0.565709 | 1.4:-1138775 | MS.gene63982:CDS |
| GCTCTGAATGAGACTTTGAA+TGG | 0.567061 | 1.4:-1137040 | MS.gene63982:CDS |
| AGCTGAGACGTCACCAGCTG+AGG | 0.567922 | 1.4:+1139130 | None:intergenic |
| TTCCAATCGAAGCATCAGAA+TGG | 0.567958 | 1.4:-1136806 | MS.gene63982:CDS |
| GATTGTGGAGGCATAAATTG+GGG | 0.570685 | 1.4:+1139445 | None:intergenic |
| TTGCTCCCAGTGGTCGACAT+AGG | 0.574211 | 1.4:-1138736 | MS.gene63982:CDS |
| GAGAGTCGTGTAAATGTGAA+AGG | 0.575120 | 1.4:-1138836 | MS.gene63982:CDS |
| AGAATAAAGAGTACAAATTG+AGG | 0.575659 | 1.4:-1138083 | MS.gene63982:CDS |
| GTTTCTGGAGGAGAGAAACC+TGG | 0.577894 | 1.4:-1139079 | MS.gene63982:CDS |
| GCATGACCGCGGTTAGGCGA+AGG | 0.578882 | 1.4:+1139247 | None:intergenic |
| TGTTCGGATGAGAGGAGGGA+AGG | 0.581391 | 1.4:-1138785 | MS.gene63982:CDS |
| TGACCAGGTCGACCTTGTAA+AGG | 0.581765 | 1.4:+1138653 | None:intergenic |
| GTTCAAGCTGTTCGGATGAG+AGG | 0.582599 | 1.4:-1138793 | MS.gene63982:CDS |
| GATGGGAGGAAAGAGAATGA+TGG | 0.583007 | 1.4:-1138986 | MS.gene63982:CDS |
| TTAGGGTTAGGGTATGAAGG+TGG | 0.584414 | 1.4:+1139502 | None:intergenic |
| CGCCTCTTAAAGGGCATAGG+CGG | 0.584555 | 1.4:-1139201 | MS.gene63982:CDS |
| TGAACAGCATGACCGCGGTT+AGG | 0.587550 | 1.4:+1139241 | None:intergenic |
| ACATGATAAGGGGAAGGGGA+AGG | 0.589634 | 1.4:+1139349 | None:intergenic |
| GTGAAAGGAATAGGTGCTAA+GGG | 0.589966 | 1.4:-1138821 | MS.gene63982:CDS |
| CGCCTATGCCCTTTAAGAGG+CGG | 0.592185 | 1.4:+1139202 | None:intergenic |
| CAAGCTGTTCGGATGAGAGG+AGG | 0.593383 | 1.4:-1138790 | MS.gene63982:CDS |
| AGTAGGTTGTGACAAAGACC+TGG | 0.598554 | 1.4:+1139411 | None:intergenic |
| TCGCCTAGCAATTCAATGGA+TGG | 0.602631 | 1.4:-1138626 | MS.gene63982:CDS |
| AAATGGTGAATTCAGCTCAC+AGG | 0.605226 | 1.4:-1138570 | MS.gene63982:CDS |
| TCGAACCCGATTCCGAAAAG+GGG | 0.606202 | 1.4:+1139317 | None:intergenic |
| TTATGAGAAGCCGATTCAGT+TGG | 0.606692 | 1.4:-1139056 | MS.gene63982:CDS |
| TTCGAAAGATGTTTCTATGG+AGG | 0.608243 | 1.4:-1139299 | MS.gene63982:CDS |
| TGAATCGGCTTCTCATAACC+AGG | 0.610622 | 1.4:+1139061 | None:intergenic |
| GTTTGAACTTACATGATAAG+GGG | 0.611900 | 1.4:+1139339 | None:intergenic |
| CAGCTGCTCGCTCAAAGGAG+CGG | 0.613324 | 1.4:-1138348 | MS.gene63982:CDS |
| CTTCTCCTATGTCGACCACT+GGG | 0.616721 | 1.4:+1138731 | None:intergenic |
| TCGAGCCATAAGACCTGAGA+GGG | 0.619641 | 1.4:+1136967 | None:intergenic |
| AAGCTGTTCGGATGAGAGGA+GGG | 0.619898 | 1.4:-1138789 | MS.gene63982:CDS |
| CCAGGTCGACCTTGTAAAGG+AGG | 0.621909 | 1.4:+1138656 | None:intergenic |
| TGGTGAGTGTCAGTGATCGT+CGG | 0.625242 | 1.4:-1139108 | MS.gene63982:CDS |
| CAGAACCAGTGGTTCGAAGA+CGG | 0.626425 | 1.4:-1138882 | MS.gene63982:CDS |
| ATAGGATTCAATTGAATTGG+GGG | 0.630004 | 1.4:+1139589 | None:intergenic |
| TTACTGCAAACATTATGCAG+TGG | 0.632905 | 1.4:+1136778 | None:intergenic |
| TTCCGCCTCTTAAAGGGCAT+AGG | 0.636814 | 1.4:-1139204 | MS.gene63982:CDS |
| TAAAACACCAGAAATCAGCA+TGG | 0.660292 | 1.4:-1138600 | MS.gene63982:CDS |
| ATGGAAGATAGCAGAACCAG+TGG | 0.676860 | 1.4:-1138893 | MS.gene63982:CDS |
| CTGATCCCAAGCGTGCAAAG+AGG | 0.685194 | 1.4:-1138499 | MS.gene63982:intron |
| CATGCACCTTCGCCTAACCG+CGG | 0.696591 | 1.4:-1139253 | MS.gene63982:CDS |
| TAAACTTGCTGAAATTGCTG+CGG | 0.696854 | 1.4:-1138522 | MS.gene63982:CDS |
| GAATGAGTTTGAGATTGTGG+AGG | 0.705083 | 1.4:+1139433 | None:intergenic |
| GTCGAGCCATAAGACCTGAG+AGG | 0.706228 | 1.4:+1136966 | None:intergenic |
| AATGGAGATATTGCTCCCAG+TGG | 0.710736 | 1.4:-1138746 | MS.gene63982:CDS |
| CATGTTGAACAGCATGACCG+CGG | 0.717359 | 1.4:+1139236 | None:intergenic |
| CACACTGTAGCAGAACTAGG+CGG | 0.776415 | 1.4:-1136998 | MS.gene63982:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATCAAATTAATCAAAT+GGG | - | chr1.4:1136877-1136896 | MS.gene63982:CDS | 10.0% |
| !! | TATTAATCAAATTAATCAAA+TGG | - | chr1.4:1136876-1136895 | MS.gene63982:CDS | 10.0% |
| !!! | ATTTGATTAATTTGATTAAT+AGG | + | chr1.4:1136877-1136896 | None:intergenic | 10.0% |
| !!! | TTCAATATTAAAATTTTCAA+TGG | + | chr1.4:1137751-1137770 | None:intergenic | 10.0% |
| !!! | GAATATAGTAATTCAAATTT+TGG | - | chr1.4:1138640-1138659 | MS.gene63982:CDS | 15.0% |
| !! | AATTCACAAACTTAAGAAAA+AGG | + | chr1.4:1138236-1138255 | None:intergenic | 20.0% |
| !! | GAATCAATAGATAAAAAAGT+AGG | + | chr1.4:1137048-1137067 | None:intergenic | 20.0% |
| !! | TAACTAGAACATAAAGTAAA+AGG | + | chr1.4:1138436-1138455 | None:intergenic | 20.0% |
| !! | TGAATACATAGCTAAATATT+TGG | + | chr1.4:1139359-1139378 | None:intergenic | 20.0% |
| !!! | ATATACTGTATGACAAATTT+TGG | - | chr1.4:1138612-1138631 | MS.gene63982:CDS | 20.0% |
| !!! | ATATTTAGATGGATTTTATG+TGG | - | chr1.4:1138573-1138592 | MS.gene63982:CDS | 20.0% |
| !!! | CATTTTAGTATCATGTATTA+AGG | - | chr1.4:1138929-1138948 | MS.gene63982:CDS | 20.0% |
| !!! | TGTGATTTTCTATATTTAGA+TGG | - | chr1.4:1138562-1138581 | MS.gene63982:CDS | 20.0% |
| !!! | TTAATTTGATTAATAGGCAT+AGG | + | chr1.4:1136871-1136890 | None:intergenic | 20.0% |
| ! | AAGATCAAAAAATATGTTGC+TGG | + | chr1.4:1139249-1139268 | None:intergenic | 25.0% |
| ! | CAAACTGTTTGAATGTAATA+TGG | - | chr1.4:1138813-1138832 | MS.gene63982:CDS | 25.0% |
| ! | GATGAAATACATTTCTGAAT+TGG | - | chr1.4:1138116-1138135 | MS.gene63982:intron | 25.0% |
| ! | TAAATGTTGAATTCTCTTCT+AGG | - | chr1.4:1138049-1138068 | MS.gene63982:CDS | 25.0% |
| !! | AGAATAAAGAGTACAAATTG+AGG | - | chr1.4:1138356-1138375 | MS.gene63982:CDS | 25.0% |
| !! | TATGCACAATATGAGTTTTT+CGG | - | chr1.4:1137521-1137540 | MS.gene63982:intron | 25.0% |
| !! | TTCCAAAAAAATAGTTTGCA+AGG | + | chr1.4:1138471-1138490 | None:intergenic | 25.0% |
| !!! | TTCCTTGCAAACTATTTTTT+TGG | - | chr1.4:1138466-1138485 | MS.gene63982:intron | 25.0% |
| !!! | TTGTATATGCAGTTTTAAAG+AGG | + | chr1.4:1138796-1138815 | None:intergenic | 25.0% |
| !!! | TTTTTTCCAAAAGAAAGACA+CGG | + | chr1.4:1137995-1138014 | None:intergenic | 25.0% |
| AAAAGAAAGACACGGAAATA+TGG | + | chr1.4:1137987-1138006 | None:intergenic | 30.0% | |
| AAAGAAAGACACGGAAATAT+GGG | + | chr1.4:1137986-1138005 | None:intergenic | 30.0% | |
| ACAGGAGATGAAGAAAATAA+TGG | - | chr1.4:1137887-1137906 | MS.gene63982:intron | 30.0% | |
| ATAAACTGGTATTAGGGTTA+GGG | + | chr1.4:1136951-1136970 | None:intergenic | 30.0% | |
| ATAGCAGCATACATGATATA+TGG | + | chr1.4:1138270-1138289 | None:intergenic | 30.0% | |
| ATAGGATTCAATTGAATTGG+GGG | + | chr1.4:1136853-1136872 | None:intergenic | 30.0% | |
| ATGCTGATAAAGAGATTCAT+AGG | + | chr1.4:1139164-1139183 | None:intergenic | 30.0% | |
| CAGAAAAAAGTTCATGCATT+TGG | - | chr1.4:1136817-1136836 | MS.gene63982:CDS | 30.0% | |
| CATAGGATTCAATTGAATTG+GGG | + | chr1.4:1136854-1136873 | None:intergenic | 30.0% | |
| GCATAGGATTCAATTGAATT+GGG | + | chr1.4:1136855-1136874 | None:intergenic | 30.0% | |
| GGTTTGAACTTACATGATAA+GGG | + | chr1.4:1137104-1137123 | None:intergenic | 30.0% | |
| GTTTAGTGCTTACATGAATT+TGG | - | chr1.4:1137494-1137513 | MS.gene63982:intron | 30.0% | |
| GTTTGAACTTACATGATAAG+GGG | + | chr1.4:1137103-1137122 | None:intergenic | 30.0% | |
| TACTCAGTTTACCAAATTAC+AGG | - | chr1.4:1138182-1138201 | MS.gene63982:intron | 30.0% | |
| TAGGTGATAAACTGGTATTA+GGG | + | chr1.4:1136957-1136976 | None:intergenic | 30.0% | |
| TATTAACCAACAAATGTTCC+AGG | - | chr1.4:1139503-1139522 | MS.gene63982:CDS | 30.0% | |
| TGAAAATTTCTAAGCTGGTT+TGG | + | chr1.4:1139543-1139562 | None:intergenic | 30.0% | |
| TTAGGTGATAAACTGGTATT+AGG | + | chr1.4:1136958-1136977 | None:intergenic | 30.0% | |
| ! | ATATTTCCGTGTCTTTCTTT+TGG | - | chr1.4:1137986-1138005 | MS.gene63982:intron | 30.0% |
| ! | ATGCACAATATGAGTTTTTC+GGG | - | chr1.4:1137522-1137541 | MS.gene63982:intron | 30.0% |
| ! | TCTATAAAGTTGATCCCATA+AGG | + | chr1.4:1138888-1138907 | None:intergenic | 30.0% |
| !! | AAAACCAAAAGTACTATGTC+AGG | + | chr1.4:1138724-1138743 | None:intergenic | 30.0% |
| !!! | AATCACAAAAGTTCTGGTTT+TGG | - | chr1.4:1136910-1136929 | MS.gene63982:CDS | 30.0% |
| !!! | GACATAGTACTTTTGGTTTT+TGG | - | chr1.4:1138724-1138743 | MS.gene63982:CDS | 30.0% |
| !!! | TGAATTCTCTTCTAGGATTT+TGG | - | chr1.4:1138056-1138075 | MS.gene63982:CDS | 30.0% |
| AAAGCCTTAGTCTACCTTAT+GGG | - | chr1.4:1138871-1138890 | MS.gene63982:CDS | 35.0% | |
| AACTTACATGATAAGGGGAA+GGG | + | chr1.4:1137098-1137117 | None:intergenic | 35.0% | |
| ACAAATTCCGATATCCCTAA+AGG | + | chr1.4:1137279-1137298 | None:intergenic | 35.0% | |
| ACATAGGAGAAGTTACTCAT+TGG | - | chr1.4:1137719-1137738 | MS.gene63982:intron | 35.0% | |
| ATGCATACCATCTTTCAGTT+GGG | + | chr1.4:1138404-1138423 | None:intergenic | 35.0% | |
| ATTCAGTACAATACGGTACT+TGG | + | chr1.4:1138753-1138772 | None:intergenic | 35.0% | |
| ATTCTGCTATGCTATAGTGT+CGG | - | chr1.4:1139119-1139138 | MS.gene63982:CDS | 35.0% | |
| CAGAGATCATTGAACAAGAT+TGG | + | chr1.4:1138674-1138693 | None:intergenic | 35.0% | |
| CATATTGTCCTGTCAAATAG+CGG | + | chr1.4:1139051-1139070 | None:intergenic | 35.0% | |
| CCAAGAGATTCAGTACAATA+CGG | + | chr1.4:1138760-1138779 | None:intergenic | 35.0% | |
| CCTGAAAATCACAAAAGTTC+TGG | - | chr1.4:1136904-1136923 | MS.gene63982:CDS | 35.0% | |
| CGTGTAAATGTGAAAGGAAT+AGG | - | chr1.4:1137609-1137628 | MS.gene63982:intron | 35.0% | |
| GATAAACTGGTATTAGGGTT+AGG | + | chr1.4:1136952-1136971 | None:intergenic | 35.0% | |
| GGCATAGGATTCAATTGAAT+TGG | + | chr1.4:1136856-1136875 | None:intergenic | 35.0% | |
| GGGTTTGAACTTACATGATA+AGG | + | chr1.4:1137105-1137124 | None:intergenic | 35.0% | |
| TAAAACACCAGAAATCAGCA+TGG | - | chr1.4:1137839-1137858 | MS.gene63982:intron | 35.0% | |
| TAGTTTCTGTCTGAAGAGTT+TGG | + | chr1.4:1138152-1138171 | None:intergenic | 35.0% | |
| TGATGGTTTAGGTGATAAAC+TGG | + | chr1.4:1136965-1136984 | None:intergenic | 35.0% | |
| TTATTGCACTTGTCTACAGA+TGG | - | chr1.4:1138312-1138331 | MS.gene63982:CDS | 35.0% | |
| TTCAGTACAATACGGTACTT+GGG | + | chr1.4:1138752-1138771 | None:intergenic | 35.0% | |
| ! | AAAGATGTTTCTATGGAGGA+TGG | - | chr1.4:1137144-1137163 | MS.gene63982:intron | 35.0% |
| ! | AGATTGTGGAGGCATAAATT+GGG | + | chr1.4:1136998-1137017 | None:intergenic | 35.0% |
| ! | CCAGAACTTTTGTGATTTTC+AGG | + | chr1.4:1136907-1136926 | None:intergenic | 35.0% |
| ! | TGTAAGTTCAAACCCCTTTT+CGG | - | chr1.4:1137110-1137129 | MS.gene63982:intron | 35.0% |
| ! | TTCAATTGAATTGGGGGTTT+TGG | + | chr1.4:1136847-1136866 | None:intergenic | 35.0% |
| ! | TTCGAAAGATGTTTCTATGG+AGG | - | chr1.4:1137140-1137159 | MS.gene63982:intron | 35.0% |
| !! | TAAACTTGCTGAAATTGCTG+CGG | - | chr1.4:1137917-1137936 | MS.gene63982:intron | 35.0% |
| !! | TTATCAGCATTTTTCAGCAC+TGG | - | chr1.4:1139174-1139193 | MS.gene63982:CDS | 35.0% |
| !!! | CAATATGAGTTTTTCGGGTA+TGG | - | chr1.4:1137527-1137546 | MS.gene63982:intron | 35.0% |
| AAATGGTGAATTCAGCTCAC+AGG | - | chr1.4:1137869-1137888 | MS.gene63982:intron | 40.0% | |
| AATTGGGGATAAGGAGATGA+TGG | + | chr1.4:1136982-1137001 | None:intergenic | 40.0% | |
| ACTCAATGGTGGCAAAGAAA+AGG | + | chr1.4:1137070-1137089 | None:intergenic | 40.0% | |
| ACTTACATGATAAGGGGAAG+GGG | + | chr1.4:1137097-1137116 | None:intergenic | 40.0% | |
| AGGAATTACAGTGCTTCTGA+AGG | + | chr1.4:1139302-1139321 | None:intergenic | 40.0% | |
| ATCAGCATGGAGTTTGGAAA+TGG | - | chr1.4:1137852-1137871 | MS.gene63982:intron | 40.0% | |
| ATTGTCTTCCGCCTCTTAAA+GGG | - | chr1.4:1137229-1137248 | MS.gene63982:intron | 40.0% | |
| CAAAGCCTTAGTCTACCTTA+TGG | - | chr1.4:1138870-1138889 | MS.gene63982:CDS | 40.0% | |
| CAAATTGAGGCTTCAATCCT+TGG | - | chr1.4:1138369-1138388 | MS.gene63982:CDS | 40.0% | |
| CACAATCTCAAACTCATTCC+AGG | - | chr1.4:1137010-1137029 | MS.gene63982:CDS | 40.0% | |
| CATAAGCTTCCTCCTTTACA+AGG | - | chr1.4:1137774-1137793 | MS.gene63982:intron | 40.0% | |
| CATAAGGTAGACTAAGGCTT+TGG | + | chr1.4:1138872-1138891 | None:intergenic | 40.0% | |
| CATGCATACCATCTTTCAGT+TGG | + | chr1.4:1138405-1138424 | None:intergenic | 40.0% | |
| CATTTCTGAATTGGAGCAGA+AGG | - | chr1.4:1138125-1138144 | MS.gene63982:intron | 40.0% | |
| CCGTATTGTACTGAATCTCT+TGG | - | chr1.4:1138757-1138776 | MS.gene63982:CDS | 40.0% | |
| CTACCATCCATTGAATTGCT+AGG | + | chr1.4:1137819-1137838 | None:intergenic | 40.0% | |
| GAACTTACATGATAAGGGGA+AGG | + | chr1.4:1137099-1137118 | None:intergenic | 40.0% | |
| GAGAGTCGTGTAAATGTGAA+AGG | - | chr1.4:1137603-1137622 | MS.gene63982:intron | 40.0% | |
| GATGATACGCACCTGTAATT+TGG | + | chr1.4:1138196-1138215 | None:intergenic | 40.0% | |
| GGAATTACAGTGCTTCTGAA+GGG | + | chr1.4:1139301-1139320 | None:intergenic | 40.0% | |
| GTATTAGGGTTAGGGTATGA+AGG | + | chr1.4:1136943-1136962 | None:intergenic | 40.0% | |
| GTCAGGCAGGAAGATTTAAA+AGG | + | chr1.4:1138707-1138726 | None:intergenic | 40.0% | |
| GTGAAAGGAATAGGTGCTAA+GGG | - | chr1.4:1137618-1137637 | MS.gene63982:intron | 40.0% | |
| TACTATAGCCGCTATTTGAC+AGG | - | chr1.4:1139040-1139059 | MS.gene63982:CDS | 40.0% | |
| TCAATTGCAGCACACAATCA+AGG | + | chr1.4:1139322-1139341 | None:intergenic | 40.0% | |
| TCCTTCAACACCAACTGAAT+CGG | + | chr1.4:1137396-1137415 | None:intergenic | 40.0% | |
| TGATCCCATAAGGTAGACTA+AGG | + | chr1.4:1138878-1138897 | None:intergenic | 40.0% | |
| TGTGAAAGGAATAGGTGCTA+AGG | - | chr1.4:1137617-1137636 | MS.gene63982:intron | 40.0% | |
| TTAGAGGAGAGAGTTTCGAT+GGG | - | chr1.4:1137436-1137455 | MS.gene63982:intron | 40.0% | |
| TTCAGTGTTGTCAATCACAG+CGG | - | chr1.4:1138970-1138989 | MS.gene63982:CDS | 40.0% | |
| TTTAGAGGAGAGAGTTTCGA+TGG | - | chr1.4:1137435-1137454 | MS.gene63982:intron | 40.0% | |
| ! | AGAGAATGATGGAGCTGAAA+TGG | - | chr1.4:1137464-1137483 | MS.gene63982:intron | 40.0% |
| ! | CTGGAATGAGTTTGAGATTG+TGG | + | chr1.4:1137012-1137031 | None:intergenic | 40.0% |
| ! | GAATGAGTTTGAGATTGTGG+AGG | + | chr1.4:1137009-1137028 | None:intergenic | 40.0% |
| ! | GAGATTGTGGAGGCATAAAT+TGG | + | chr1.4:1136999-1137018 | None:intergenic | 40.0% |
| ! | GATTGTGGAGGCATAAATTG+GGG | + | chr1.4:1136997-1137016 | None:intergenic | 40.0% |
| ! | GCTCTGAATGAGACTTTGAA+TGG | - | chr1.4:1139399-1139418 | MS.gene63982:CDS | 40.0% |
| ! | GGATAAGGAGATGATGGTTT+AGG | + | chr1.4:1136976-1136995 | None:intergenic | 40.0% |
| ! | GGGTTCGAAAGATGTTTCTA+TGG | - | chr1.4:1137137-1137156 | MS.gene63982:intron | 40.0% |
| ! | TGATTCGCCTTTAGGGATAT+CGG | - | chr1.4:1137269-1137288 | MS.gene63982:intron | 40.0% |
| ! | TTATGAGAAGCCGATTCAGT+TGG | - | chr1.4:1137383-1137402 | MS.gene63982:intron | 40.0% |
| ! | TTCAAACCCCTTTTCGGAAT+CGG | - | chr1.4:1137116-1137135 | MS.gene63982:intron | 40.0% |
| ! | TTCCAATCGAAGCATCAGAA+TGG | - | chr1.4:1139633-1139652 | MS.gene63982:CDS | 40.0% |
| !! | TCAGTTGGTGTTGAAGGATA+GGG | - | chr1.4:1137398-1137417 | MS.gene63982:intron | 40.0% |
| !! | TTCAGTTGGTGTTGAAGGAT+AGG | - | chr1.4:1137397-1137416 | MS.gene63982:intron | 40.0% |
| AAGGATAGGGACTGTGTTGA+TGG | - | chr1.4:1137411-1137430 | MS.gene63982:intron | 45.0% | |
| AATGGAGATATTGCTCCCAG+TGG | - | chr1.4:1137693-1137712 | MS.gene63982:intron | 45.0% | |
| ACACTCGCCTAGCAATTCAA+TGG | - | chr1.4:1137809-1137828 | MS.gene63982:intron | 45.0% | |
| AGACACACTGTAGCAGAACT+AGG | - | chr1.4:1139438-1139457 | MS.gene63982:CDS | 45.0% | |
| AGACTTTGAATGGCGAAGTC+AGG | - | chr1.4:1139409-1139428 | MS.gene63982:CDS | 45.0% | |
| AGTAGGTTGTGACAAAGACC+TGG | + | chr1.4:1137031-1137050 | None:intergenic | 45.0% | |
| ATGGAAGATAGCAGAACCAG+TGG | - | chr1.4:1137546-1137565 | MS.gene63982:intron | 45.0% | |
| CAACAGTCCCAACTGAAAGA+TGG | - | chr1.4:1138394-1138413 | MS.gene63982:intron | 45.0% | |
| CAATCACAGCGGAAAGTAGT+GGG | - | chr1.4:1138981-1139000 | MS.gene63982:CDS | 45.0% | |
| CATTGTCTTCCGCCTCTTAA+AGG | - | chr1.4:1137228-1137247 | MS.gene63982:intron | 45.0% | |
| CCAGAAATCAGCATGGAGTT+TGG | - | chr1.4:1137846-1137865 | MS.gene63982:intron | 45.0% | |
| CCTATAGCACTGTAGCATAG+CGG | + | chr1.4:1139018-1139037 | None:intergenic | 45.0% | |
| CGCTATGCTACAGTGCTATA+GGG | - | chr1.4:1139016-1139035 | MS.gene63982:CDS | 45.0% | |
| CTAGCAGTGATTCGCCTTTA+GGG | - | chr1.4:1137262-1137281 | MS.gene63982:intron | 45.0% | |
| GATGGGAGGAAAGAGAATGA+TGG | - | chr1.4:1137453-1137472 | MS.gene63982:intron | 45.0% | |
| GCGGCTGAAAATTTCTAAGC+TGG | + | chr1.4:1139548-1139567 | None:intergenic | 45.0% | |
| GCTGTGATTGACAACACTGA+AGG | + | chr1.4:1138971-1138990 | None:intergenic | 45.0% | |
| GTTTCTATGGAGGATGGCTT+GGG | - | chr1.4:1137150-1137169 | MS.gene63982:intron | 45.0% | |
| TCAATCACAGCGGAAAGTAG+TGG | - | chr1.4:1138980-1138999 | MS.gene63982:CDS | 45.0% | |
| TCGCCTAGCAATTCAATGGA+TGG | - | chr1.4:1137813-1137832 | MS.gene63982:intron | 45.0% | |
| TCTAGCAGTGATTCGCCTTT+AGG | - | chr1.4:1137261-1137280 | MS.gene63982:intron | 45.0% | |
| TCTTACCTCTTTGCACGCTT+GGG | + | chr1.4:1137948-1137967 | None:intergenic | 45.0% | |
| TGCCATTCTGATGCTTCGAT+TGG | + | chr1.4:1139638-1139657 | None:intergenic | 45.0% | |
| TGTCAGTGATCGTCGGAATT+TGG | - | chr1.4:1137338-1137357 | MS.gene63982:intron | 45.0% | |
| TTAGGGTTAGGGTATGAAGG+TGG | + | chr1.4:1136940-1136959 | None:intergenic | 45.0% | |
| TTCGAACCCGATTCCGAAAA+GGG | + | chr1.4:1137126-1137145 | None:intergenic | 45.0% | |
| TTCTTACCTCTTTGCACGCT+TGG | + | chr1.4:1137949-1137968 | None:intergenic | 45.0% | |
| TTTCGAACCCGATTCCGAAA+AGG | + | chr1.4:1137127-1137146 | None:intergenic | 45.0% | |
| ! | AGGATAGGGACTGTGTTGAT+GGG | - | chr1.4:1137412-1137431 | MS.gene63982:intron | 45.0% |
| ! | CCTGCCTGACATAGTACTTT+TGG | - | chr1.4:1138717-1138736 | MS.gene63982:CDS | 45.0% |
| ! | GATCGTCGGAATTTGGTTTC+TGG | - | chr1.4:1137345-1137364 | MS.gene63982:intron | 45.0% |
| ! | GGAGGCATAAATTGGGGATA+AGG | + | chr1.4:1136991-1137010 | None:intergenic | 45.0% |
| ! | GGAGTCAAGAGGAGTTCTAA+TGG | - | chr1.4:1137675-1137694 | MS.gene63982:intron | 45.0% |
| ! | TCAAACCCCTTTTCGGAATC+GGG | - | chr1.4:1137117-1137136 | MS.gene63982:intron | 45.0% |
| ! | TGAATCGGCTTCTCATAACC+AGG | + | chr1.4:1137381-1137400 | None:intergenic | 45.0% |
| ! | TGTTTCTATGGAGGATGGCT+TGG | - | chr1.4:1137149-1137168 | MS.gene63982:intron | 45.0% |
| ! | TTACAGTGCTTCTGAAGGGA+TGG | + | chr1.4:1139297-1139316 | None:intergenic | 45.0% |
| !! | CCAAAAGTACTATGTCAGGC+AGG | + | chr1.4:1138720-1138739 | None:intergenic | 45.0% |
| !! | CCAAACTCCATGCTGATTTC+TGG | + | chr1.4:1137849-1137868 | None:intergenic | 45.0% |
| !! | GACTGTGTTGATGGGTTTAG+AGG | - | chr1.4:1137420-1137439 | MS.gene63982:intron | 45.0% |
| AAGCTGTTCGGATGAGAGGA+GGG | - | chr1.4:1137650-1137669 | MS.gene63982:intron | 50.0% | |
| ACATGATAAGGGGAAGGGGA+AGG | + | chr1.4:1137093-1137112 | None:intergenic | 50.0% | |
| ACTTCTCCTATGTCGACCAC+TGG | + | chr1.4:1137712-1137731 | None:intergenic | 50.0% | |
| CACACTGTAGCAGAACTAGG+CGG | - | chr1.4:1139441-1139460 | MS.gene63982:CDS | 50.0% | |
| CAGAACCAGTGGTTCGAAGA+CGG | - | chr1.4:1137557-1137576 | MS.gene63982:intron | 50.0% | |
| CAGTTGGGACTGTTGTTCCA+AGG | + | chr1.4:1138389-1138408 | None:intergenic | 50.0% | |
| CATGTTGAACAGCATGACCG+CGG | + | chr1.4:1137206-1137225 | None:intergenic | 50.0% | |
| CCGCTATGCTACAGTGCTAT+AGG | - | chr1.4:1139015-1139034 | MS.gene63982:CDS | 50.0% | |
| CTTCTCCTATGTCGACCACT+GGG | + | chr1.4:1137711-1137730 | None:intergenic | 50.0% | |
| GTTCAAGCTGTTCGGATGAG+AGG | - | chr1.4:1137646-1137665 | MS.gene63982:intron | 50.0% | |
| TCAATCAGCTGCTCGCTCAA+AGG | - | chr1.4:1138086-1138105 | MS.gene63982:CDS | 50.0% | |
| TCGAACCCGATTCCGAAAAG+GGG | + | chr1.4:1137125-1137144 | None:intergenic | 50.0% | |
| TCGAGCCATAAGACCTGAGA+GGG | + | chr1.4:1139475-1139494 | None:intergenic | 50.0% | |
| TGACCAGGTCGACCTTGTAA+AGG | + | chr1.4:1137789-1137808 | None:intergenic | 50.0% | |
| TGGTGAGTGTCAGTGATCGT+CGG | - | chr1.4:1137331-1137350 | MS.gene63982:intron | 50.0% | |
| TGTTAACTCTGTGCCTCAGC+TGG | - | chr1.4:1137296-1137315 | MS.gene63982:intron | 50.0% | |
| TTCAACCGTCTTCGAACCAC+TGG | + | chr1.4:1137565-1137584 | None:intergenic | 50.0% | |
| ! | CGTCGGAATTTGGTTTCTGG+AGG | - | chr1.4:1137348-1137367 | MS.gene63982:intron | 50.0% |
| ! | GCACTGTAGCATAGCGGAAT+TGG | + | chr1.4:1139012-1139031 | None:intergenic | 50.0% |
| ! | GTTAGGCGAAGGTGCATGAT+GGG | + | chr1.4:1137184-1137203 | None:intergenic | 50.0% |
| ! | GTTTCTGGAGGAGAGAAACC+TGG | - | chr1.4:1137360-1137379 | MS.gene63982:intron | 50.0% |
| ! | TTCCGCCTCTTAAAGGGCAT+AGG | - | chr1.4:1137235-1137254 | MS.gene63982:intron | 50.0% |
| !! | ATGGAGGATGGCTTGGGTTT+TGG | - | chr1.4:1137156-1137175 | MS.gene63982:intron | 50.0% |
| !! | GCCGATTCAGTTGGTGTTGA+AGG | - | chr1.4:1137392-1137411 | MS.gene63982:intron | 50.0% |
| !! | TCCTGAGAGACGCTGTTTTG+CGG | + | chr1.4:1139567-1139586 | None:intergenic | 50.0% |
| AGAGGAGGGAAGGAGTCAAG+AGG | - | chr1.4:1137664-1137683 | MS.gene63982:intron | 55.0% | |
| CAAGCTGTTCGGATGAGAGG+AGG | - | chr1.4:1137649-1137668 | MS.gene63982:intron | 55.0% | |
| CCAGGTCGACCTTGTAAAGG+AGG | + | chr1.4:1137786-1137805 | None:intergenic | 55.0% | |
| CCTCCTTTACAAGGTCGACC+TGG | - | chr1.4:1137783-1137802 | MS.gene63982:intron | 55.0% | |
| CGCGGTCATGCTGTTCAACA+TGG | - | chr1.4:1137204-1137223 | MS.gene63982:intron | 55.0% | |
| CTGATCCCAAGCGTGCAAAG+AGG | - | chr1.4:1137940-1137959 | MS.gene63982:intron | 55.0% | |
| GAAGGGGAAGGACTCAATGG+TGG | + | chr1.4:1137081-1137100 | None:intergenic | 55.0% | |
| GACCGCCTATGCCCTTTAAG+AGG | + | chr1.4:1137243-1137262 | None:intergenic | 55.0% | |
| GAGGAGAGAGTTTCGATGGG+AGG | - | chr1.4:1137439-1137458 | MS.gene63982:intron | 55.0% | |
| GCTGCGCCTGGAACATTTGT+TGG | + | chr1.4:1139512-1139531 | None:intergenic | 55.0% | |
| GGGTGCGAGTTCAAGCTGTT+CGG | - | chr1.4:1137638-1137657 | MS.gene63982:intron | 55.0% | |
| GTCGAGCCATAAGACCTGAG+AGG | + | chr1.4:1139476-1139495 | None:intergenic | 55.0% | |
| GTCTGCCCTCTCAGGTCTTA+TGG | - | chr1.4:1139467-1139486 | MS.gene63982:CDS | 55.0% | |
| TGAACAGCATGACCGCGGTT+AGG | + | chr1.4:1137201-1137220 | None:intergenic | 55.0% | |
| TGTTCGGATGAGAGGAGGGA+AGG | - | chr1.4:1137654-1137673 | MS.gene63982:intron | 55.0% | |
| TTGCTCCCAGTGGTCGACAT+AGG | - | chr1.4:1137703-1137722 | MS.gene63982:intron | 55.0% | |
| ! | CAGTGCTTCTGAAGGGATGG+TGG | + | chr1.4:1139294-1139313 | None:intergenic | 55.0% |
| ! | CGCCTATGCCCTTTAAGAGG+CGG | + | chr1.4:1137240-1137259 | None:intergenic | 55.0% |
| ! | CGCCTCTTAAAGGGCATAGG+CGG | - | chr1.4:1137238-1137257 | MS.gene63982:intron | 55.0% |
| ! | GGTTAGGCGAAGGTGCATGA+TGG | + | chr1.4:1137185-1137204 | None:intergenic | 55.0% |
| ! | TGCTTCTGAAGGGATGGTGG+TGG | + | chr1.4:1139291-1139310 | None:intergenic | 55.0% |
| !! | TTGCTAGGCGAGTGTTGACC+AGG | + | chr1.4:1137804-1137823 | None:intergenic | 55.0% |
| AGCTGAGACGTCACCAGCTG+AGG | + | chr1.4:1137312-1137331 | None:intergenic | 60.0% | |
| CAGCTGCTCGCTCAAAGGAG+CGG | - | chr1.4:1138091-1138110 | MS.gene63982:CDS | 60.0% | |
| CATGCACCTTCGCCTAACCG+CGG | - | chr1.4:1137186-1137205 | MS.gene63982:intron | 60.0% | |
| GCCGCAAAACAGCGTCTCTC+AGG | - | chr1.4:1139563-1139582 | MS.gene63982:CDS | 60.0% | |
| GGGGAAGGGGAAGGACTCAA+TGG | + | chr1.4:1137084-1137103 | None:intergenic | 60.0% | |
| ! | TCAGCTGGTGACGTCTCAGC+TGG | - | chr1.4:1137311-1137330 | MS.gene63982:intron | 60.0% |
| GCATGACCGCGGTTAGGCGA+AGG | + | chr1.4:1137195-1137214 | None:intergenic | 65.0% | |
| TTGGCTGCTGATGCTGCGCC+TGG | + | chr1.4:1139524-1139543 | None:intergenic | 65.0% | |
| GGCGGAGAGTCTGCCCTCTC+AGG | - | chr1.4:1139459-1139478 | MS.gene63982:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1136790 | 1139671 | 1136790 | ID=MS.gene63982 |
| chr1.4 | mRNA | 1136790 | 1139671 | 1136790 | ID=MS.gene63982.t1;Parent=MS.gene63982 |
| chr1.4 | exon | 1138500 | 1139671 | 1138500 | ID=MS.gene63982.t1.exon1;Parent=MS.gene63982.t1 |
| chr1.4 | CDS | 1138500 | 1139671 | 1138500 | ID=cds.MS.gene63982.t1;Parent=MS.gene63982.t1 |
| chr1.4 | exon | 1138258 | 1138390 | 1138258 | ID=MS.gene63982.t1.exon2;Parent=MS.gene63982.t1 |
| chr1.4 | CDS | 1138258 | 1138390 | 1138258 | ID=cds.MS.gene63982.t1;Parent=MS.gene63982.t1 |
| chr1.4 | exon | 1138046 | 1138130 | 1138046 | ID=MS.gene63982.t1.exon3;Parent=MS.gene63982.t1 |
| chr1.4 | CDS | 1138046 | 1138130 | 1138046 | ID=cds.MS.gene63982.t1;Parent=MS.gene63982.t1 |
| chr1.4 | exon | 1136790 | 1137061 | 1136790 | ID=MS.gene63982.t1.exon4;Parent=MS.gene63982.t1 |
| chr1.4 | CDS | 1136790 | 1137061 | 1136790 | ID=cds.MS.gene63982.t1;Parent=MS.gene63982.t1 |
| Gene Sequence |
| Protein sequence |
