Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63999.t1 | XP_013466176.1 | 91.9 | 1081 | 88 | 0 | 1 | 1081 | 1 | 1081 | 0.00E+00 | 1587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63999.t1 | Q0WSY2 | 43.9 | 1099 | 479 | 18 | 1 | 1078 | 1 | 982 | 2.5e-150 | 534.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63999.t1 | A0A072VFI4 | 91.9 | 1081 | 88 | 0 | 1 | 1081 | 1 | 1081 | 0.0e+00 | 1587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051768 | MS.gene63999 | 0.814309 | 1.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63999.t1 | MTR_1g024095 | 98.612 | 1081 | 15 | 0 | 1 | 1081 | 1 | 1081 | 0.0 | 2185 |
| MS.gene63999.t1 | MTR_1g024095 | 98.483 | 923 | 14 | 0 | 1 | 923 | 1 | 923 | 0.0 | 1850 |
| MS.gene63999.t1 | MTR_3g113290 | 70.207 | 1111 | 286 | 9 | 1 | 1081 | 1 | 1096 | 0.0 | 1455 |
| MS.gene63999.t1 | MTR_5g021810 | 49.412 | 510 | 222 | 7 | 1 | 503 | 1 | 481 | 2.11e-125 | 402 |
| MS.gene63999.t1 | MTR_5g021810 | 37.121 | 264 | 143 | 6 | 835 | 1081 | 509 | 766 | 7.59e-35 | 144 |
| MS.gene63999.t1 | MTR_5g021810 | 49.513 | 513 | 218 | 8 | 1 | 503 | 1 | 482 | 3.22e-125 | 401 |
| MS.gene63999.t1 | MTR_5g021810 | 37.121 | 264 | 143 | 6 | 835 | 1081 | 510 | 767 | 7.77e-35 | 144 |
| MS.gene63999.t1 | MTR_4g094848 | 36.255 | 502 | 265 | 8 | 1 | 500 | 1 | 449 | 8.79e-65 | 239 |
| MS.gene63999.t1 | MTR_1g030010 | 42.918 | 233 | 108 | 2 | 67 | 299 | 136 | 343 | 6.56e-42 | 166 |
| MS.gene63999.t1 | MTR_4g094848 | 37.394 | 353 | 204 | 6 | 149 | 500 | 1 | 337 | 1.68e-41 | 166 |
| MS.gene63999.t1 | MTR_8g094760 | 39.216 | 306 | 146 | 7 | 1 | 299 | 1 | 273 | 6.06e-40 | 158 |
| MS.gene63999.t1 | MTR_8g094760 | 41.410 | 227 | 108 | 2 | 74 | 299 | 59 | 261 | 3.23e-36 | 146 |
| MS.gene63999.t1 | MTR_3g096990 | 40.708 | 226 | 111 | 3 | 74 | 299 | 55 | 257 | 2.52e-34 | 140 |
| MS.gene63999.t1 | MTR_3g096990 | 40.708 | 226 | 111 | 3 | 74 | 299 | 55 | 257 | 1.00e-33 | 140 |
| MS.gene63999.t1 | MTR_4g085570 | 31.507 | 365 | 227 | 8 | 142 | 500 | 86 | 433 | 2.30e-28 | 123 |
| MS.gene63999.t1 | MTR_5g016830 | 32.184 | 261 | 147 | 3 | 1 | 260 | 1 | 232 | 3.23e-28 | 123 |
| MS.gene63999.t1 | MTR_4g085570 | 31.507 | 365 | 227 | 8 | 142 | 500 | 86 | 433 | 3.30e-28 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63999.t1 | AT1G19835 | 51.226 | 1101 | 395 | 18 | 1 | 1078 | 1 | 982 | 0.0 | 924 |
| MS.gene63999.t1 | AT1G19835 | 51.226 | 1101 | 395 | 18 | 1 | 1078 | 1 | 982 | 0.0 | 924 |
| MS.gene63999.t1 | AT1G19835 | 51.226 | 1101 | 395 | 18 | 1 | 1078 | 1 | 982 | 0.0 | 924 |
| MS.gene63999.t1 | AT1G19835 | 51.226 | 1101 | 395 | 18 | 1 | 1078 | 1 | 982 | 0.0 | 924 |
| MS.gene63999.t1 | AT1G19835 | 51.226 | 1101 | 395 | 18 | 1 | 1078 | 1 | 982 | 0.0 | 924 |
| MS.gene63999.t1 | AT1G19835 | 51.226 | 1101 | 395 | 18 | 1 | 1078 | 1 | 982 | 0.0 | 924 |
| MS.gene63999.t1 | AT1G47900 | 48.864 | 1144 | 422 | 23 | 1 | 1076 | 1 | 1049 | 0.0 | 900 |
| MS.gene63999.t1 | AT1G47900 | 48.778 | 1146 | 422 | 24 | 1 | 1076 | 1 | 1051 | 0.0 | 896 |
| MS.gene63999.t1 | AT1G47900 | 48.778 | 1146 | 422 | 24 | 1 | 1076 | 1 | 1051 | 0.0 | 896 |
| MS.gene63999.t1 | AT2G23360 | 35.893 | 521 | 248 | 13 | 1 | 515 | 1 | 441 | 3.33e-65 | 238 |
| MS.gene63999.t1 | AT4G36120 | 31.650 | 515 | 277 | 14 | 573 | 1078 | 544 | 992 | 5.41e-44 | 174 |
| MS.gene63999.t1 | AT4G36120 | 31.650 | 515 | 277 | 14 | 573 | 1078 | 544 | 992 | 5.41e-44 | 174 |
| MS.gene63999.t1 | AT3G05270 | 38.538 | 301 | 138 | 8 | 1 | 299 | 1 | 256 | 1.64e-37 | 150 |
| MS.gene63999.t1 | AT3G05270 | 38.538 | 301 | 138 | 8 | 1 | 299 | 1 | 256 | 1.64e-37 | 150 |
| MS.gene63999.t1 | AT3G05270 | 38.538 | 301 | 138 | 8 | 1 | 299 | 1 | 256 | 1.64e-37 | 150 |
| MS.gene63999.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 58 | 250 | 6.24e-34 | 141 |
| MS.gene63999.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 58 | 250 | 6.24e-34 | 141 |
| MS.gene63999.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 24 | 216 | 6.60e-34 | 139 |
| MS.gene63999.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 24 | 216 | 7.86e-34 | 140 |
| MS.gene63999.t1 | AT1G21810 | 36.190 | 210 | 92 | 1 | 89 | 298 | 13 | 180 | 2.07e-27 | 119 |
| MS.gene63999.t1 | AT1G21810 | 36.190 | 210 | 92 | 1 | 89 | 298 | 13 | 180 | 2.07e-27 | 119 |
| MS.gene63999.t1 | AT2G24470 | 56.338 | 71 | 31 | 0 | 162 | 232 | 22 | 92 | 7.98e-17 | 77.0 |
| MS.gene63999.t1 | AT3G19370 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.73e-15 | 82.0 |
| MS.gene63999.t1 | AT3G19370 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.73e-15 | 82.0 |
| MS.gene63999.t1 | AT3G19370 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.73e-15 | 82.0 |
Find 193 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAAATTCATTATCTTTC+TGG | 0.062149 | 1.4:+911883 | None:intergenic |
| TCAGTTCATGTTCTTCTTTC+AGG | 0.092243 | 1.4:+912477 | None:intergenic |
| TCCACCTGATCCTGCAAATT+TGG | 0.097144 | 1.4:+909596 | None:intergenic |
| TCTTGATCTGTCTCATTTCT+TGG | 0.164294 | 1.4:-910791 | MS.gene63999:CDS |
| AAGGATGATCCTGAAGATTT+TGG | 0.192360 | 1.4:-911051 | MS.gene63999:CDS |
| TTCATATGGATGGGAGATTT+TGG | 0.201783 | 1.4:+911696 | None:intergenic |
| ATTTAATATCCTTGGTTATA+AGG | 0.215009 | 1.4:-910749 | MS.gene63999:CDS |
| GTCTTATTGTTTGAAGTAAA+TGG | 0.215951 | 1.4:+911411 | None:intergenic |
| ACTTAGCAAACTTCAAATTT+TGG | 0.228892 | 1.4:-911757 | MS.gene63999:CDS |
| CAAGCAATTGGACAAGATTA+AGG | 0.237668 | 1.4:-912426 | MS.gene63999:CDS |
| CAGAAAACTCCTCCATCTTT+TGG | 0.257130 | 1.4:+910863 | None:intergenic |
| TTGCTGCATAGCCTGTATTT+TGG | 0.257557 | 1.4:+911655 | None:intergenic |
| ATTGCGAATTTCAAGCTCTT+TGG | 0.257885 | 1.4:+912184 | None:intergenic |
| TTGAAGTTTGCTAAGTGTTT+TGG | 0.260849 | 1.4:+911764 | None:intergenic |
| AATATGACTCTACAGAAATT+TGG | 0.262881 | 1.4:+912896 | None:intergenic |
| TGATACTCCATGTGATAAAA+AGG | 0.263448 | 1.4:-911070 | MS.gene63999:CDS |
| GAAAGTCTTGGCCGAGATTA+TGG | 0.264945 | 1.4:-911996 | MS.gene63999:CDS |
| TTTGGCTGTATATGCTTTCA+TGG | 0.269714 | 1.4:+911673 | None:intergenic |
| TACAAAACATATACCTGTTT+GGG | 0.302469 | 1.4:+913457 | None:intergenic |
| GCTATCAATCCCACGGGGAC+TGG | 0.303633 | 1.4:+911260 | None:intergenic |
| CTACAAAACATATACCTGTT+TGG | 0.304368 | 1.4:+913456 | None:intergenic |
| TGAGAAAGTTGCTGCTGAAT+TGG | 0.315843 | 1.4:-913503 | MS.gene63999:CDS |
| GACTTTGTAGGCTTGTGATT+TGG | 0.317402 | 1.4:+909446 | None:intergenic |
| CTAGAGGTGGAGAAATTTGC+TGG | 0.321649 | 1.4:-911468 | MS.gene63999:CDS |
| CCACCTGATCCTGCAAATTT+GGG | 0.328853 | 1.4:+909597 | None:intergenic |
| TTTAATATCCTTGGTTATAA+GGG | 0.333038 | 1.4:-910748 | MS.gene63999:CDS |
| GGCTCTGTCTAGGTCCTTGC+AGG | 0.333327 | 1.4:-912339 | MS.gene63999:CDS |
| ACTGTCAGTGTTTGAATCTA+TGG | 0.340845 | 1.4:-911208 | MS.gene63999:CDS |
| CTATCAATCCCACGGGGACT+GGG | 0.341097 | 1.4:+911261 | None:intergenic |
| AGAAAAGAATGCTGACGAAT+TGG | 0.344363 | 1.4:-911535 | MS.gene63999:CDS |
| GATGAAGAGGCTGACTTTGT+AGG | 0.345777 | 1.4:+909434 | None:intergenic |
| TAATGAAATTCAGACTAAAA+AGG | 0.347824 | 1.4:-909878 | MS.gene63999:intron |
| GAAACTGAACCAAAATCTTC+AGG | 0.348387 | 1.4:+911042 | None:intergenic |
| CCTTCTGCTGATTACTTGTC+TGG | 0.348966 | 1.4:+911724 | None:intergenic |
| GCATACACTCAGAAGGTTCT+TGG | 0.355846 | 1.4:+910998 | None:intergenic |
| CAGGAAACAATATATCTTCT+TGG | 0.355918 | 1.4:-909722 | MS.gene63999:CDS |
| ACCTCGGAGCCCAAATTTGC+AGG | 0.363025 | 1.4:-909606 | MS.gene63999:CDS |
| GAGATGGACGGAGCTAGTTT+TGG | 0.363929 | 1.4:-909575 | MS.gene63999:CDS |
| GAACATGTTTAATATCCTTC+AGG | 0.376801 | 1.4:+911160 | None:intergenic |
| CTCGGATATATCATCTTTGC+TGG | 0.377440 | 1.4:+911350 | None:intergenic |
| ATCATTACCATCTTCAGAAA+TGG | 0.383278 | 1.4:+911623 | None:intergenic |
| ATATTCACATCTGACGGGTT+TGG | 0.385175 | 1.4:-912878 | MS.gene63999:CDS |
| TGAGGACTAGAAGGTTTAAC+AGG | 0.386914 | 1.4:+911951 | None:intergenic |
| TGGATGGTGTACAGGAGATA+TGG | 0.388288 | 1.4:+909466 | None:intergenic |
| GATAAATACCAAGGAAGCTT+TGG | 0.391489 | 1.4:-912764 | MS.gene63999:CDS |
| AGCTGAAGTTAAATCACAAT+TGG | 0.392320 | 1.4:-910407 | MS.gene63999:CDS |
| CTTAATCTTGTCCAATTGCT+TGG | 0.394678 | 1.4:+912427 | None:intergenic |
| ACTGCAGCAAACTTGCTTCA+TGG | 0.399033 | 1.4:+910818 | None:intergenic |
| GAAAAGAATGCTGACGAATT+GGG | 0.401808 | 1.4:-911534 | MS.gene63999:CDS |
| ATATGCTTTCATGGTTCATA+TGG | 0.402247 | 1.4:+911682 | None:intergenic |
| ACAGAAATTTGGACATAGTT+CGG | 0.403644 | 1.4:+912907 | None:intergenic |
| GATCCCATTGGTTCTGTTTG+AGG | 0.404007 | 1.4:+909677 | None:intergenic |
| CACGACTTCGTGTTGTTCCT+TGG | 0.413839 | 1.4:-910937 | MS.gene63999:CDS |
| GAGATCTCATGAAGCAGCTT+TGG | 0.414919 | 1.4:-910227 | MS.gene63999:CDS |
| AAAACGTAACAGCGAATTGC+AGG | 0.418739 | 1.4:-911805 | MS.gene63999:CDS |
| TTCATTTGTGCAAGTGCAGC+AGG | 0.425188 | 1.4:+912029 | None:intergenic |
| CTGATAATGCGGCTCTGTCT+AGG | 0.427732 | 1.4:-912349 | MS.gene63999:CDS |
| GAAACTGACTGCTGAGGATC+AGG | 0.428547 | 1.4:-912549 | MS.gene63999:CDS |
| GTTCTCCATGGAGGAATTTG+AGG | 0.432870 | 1.4:-910530 | MS.gene63999:CDS |
| TTCTCTTTCACATGATTCTA+CGG | 0.433391 | 1.4:+912241 | None:intergenic |
| TTTCTGTCTTCATTCGTAGA+TGG | 0.433666 | 1.4:+910278 | None:intergenic |
| GATGTCAAATTTCCATCATC+AGG | 0.434545 | 1.4:+910583 | None:intergenic |
| AGCTGCTAACAAACAGCATA+TGG | 0.437028 | 1.4:-912129 | MS.gene63999:CDS |
| AATCCTGAGGTTCCTGATGA+TGG | 0.437920 | 1.4:-910595 | MS.gene63999:CDS |
| GAATTCAGATTTAATATCCT+TGG | 0.447868 | 1.4:-910757 | MS.gene63999:CDS |
| TGCATCTAATCAACCCAAAC+AGG | 0.451553 | 1.4:-913470 | MS.gene63999:intron |
| AAGTGTTTGTAAAATGCAAA+GGG | 0.452367 | 1.4:+909525 | None:intergenic |
| CGAGAAGTTGTGCCGAGTCT+TGG | 0.454331 | 1.4:-911596 | MS.gene63999:CDS |
| GCAATCTTATCTATGCAATC+AGG | 0.456472 | 1.4:+910703 | None:intergenic |
| CATACACTCAGAAGGTTCTT+GGG | 0.458195 | 1.4:+910999 | None:intergenic |
| AGAACATGAACTGAAAATAC+AGG | 0.458759 | 1.4:-912468 | MS.gene63999:CDS |
| GCTTTCATGGTTCATATGGA+TGG | 0.462160 | 1.4:+911686 | None:intergenic |
| TATCCTTGGTTATAAGGGTA+TGG | 0.463385 | 1.4:-910743 | MS.gene63999:CDS |
| AGCATATACAGCCAAAATAC+AGG | 0.468052 | 1.4:-911666 | MS.gene63999:CDS |
| AGTGAAGACATATGAAGAAA+AGG | 0.470909 | 1.4:-912848 | MS.gene63999:CDS |
| AGCCAAGAGTCTCCTGCTGC+AGG | 0.471852 | 1.4:-911294 | MS.gene63999:CDS |
| TGAAAAGTTAGCCGAGTGTC+AGG | 0.477083 | 1.4:-909741 | MS.gene63999:CDS |
| AAAGGCAGAAGCAGAAGCTT+TGG | 0.478071 | 1.4:-912606 | MS.gene63999:CDS |
| ATCCTGCAGCAGGAGACTCT+TGG | 0.481478 | 1.4:+911292 | None:intergenic |
| AAATTCTCCAGGCTGGGAAA+AGG | 0.482919 | 1.4:-912624 | MS.gene63999:intron |
| TTTCCATCATCAGGAACCTC+AGG | 0.483685 | 1.4:+910592 | None:intergenic |
| TATCAATCCCACGGGGACTG+GGG | 0.484881 | 1.4:+911262 | None:intergenic |
| AAGCAATTGGACAAGATTAA+GGG | 0.485157 | 1.4:-912425 | MS.gene63999:CDS |
| AACTTCAGCTAGAAGTTGCT+CGG | 0.486763 | 1.4:+910420 | None:intergenic |
| GAATTTCAGCTACAGAGTCT+TGG | 0.486988 | 1.4:+911112 | None:intergenic |
| ACTTTGAACAGGAACTTCTC+AGG | 0.487308 | 1.4:-912379 | MS.gene63999:CDS |
| GGGGCTGGTGATCCTGCAGC+AGG | 0.488978 | 1.4:+911282 | None:intergenic |
| GCTGCTGAATTGGACTCTGC+TGG | 0.489054 | 1.4:-913493 | MS.gene63999:CDS |
| ATGATCTCCATTTCTGAAGA+TGG | 0.489920 | 1.4:-911630 | MS.gene63999:CDS |
| GAGCCCAAATTTGCAGGATC+AGG | 0.490198 | 1.4:-909600 | MS.gene63999:CDS |
| GGAGAGAAATGAGGACTAGA+AGG | 0.495341 | 1.4:+911942 | None:intergenic |
| TTGTGATTTGGATGGTGTAC+AGG | 0.497419 | 1.4:+909458 | None:intergenic |
| ATATTCTCGAGGGAGAAATC+AGG | 0.498205 | 1.4:+911915 | None:intergenic |
| TCAGAAGCTGGCACATCGAC+GGG | 0.504799 | 1.4:+911090 | None:intergenic |
| TTCTAGTCCTCATTTCTCTC+CGG | 0.504915 | 1.4:-911940 | MS.gene63999:CDS |
| GTAGCTGAAGAGGCTGTCTC+AGG | 0.506912 | 1.4:-912724 | MS.gene63999:intron |
| TTAGTTCAAGAAAATTCGTC+GGG | 0.507234 | 1.4:-910664 | MS.gene63999:CDS |
| ATATGGATAGAAGATGGCCT+TGG | 0.509231 | 1.4:-913555 | MS.gene63999:CDS |
| AAAGTGTTTGTAAAATGCAA+AGG | 0.511679 | 1.4:+909524 | None:intergenic |
| TAGGATACGGAACTTTGAAC+AGG | 0.511809 | 1.4:-912390 | MS.gene63999:CDS |
| GGAGACTCTTGGCTTTGCAA+TGG | 0.513807 | 1.4:+911303 | None:intergenic |
| TTCACATCTGACGGGTTTGG+AGG | 0.515273 | 1.4:-912875 | MS.gene63999:CDS |
| ATCACTTGAAACACGTGCAC+AGG | 0.515281 | 1.4:-910320 | MS.gene63999:CDS |
| CACAATTGGCTTCTGCTCAA+AGG | 0.517000 | 1.4:-910393 | MS.gene63999:CDS |
| CCCAAATTTGCAGGATCAGG+TGG | 0.517045 | 1.4:-909597 | MS.gene63999:CDS |
| ATTCTTGATTGAAGATCTGC+TGG | 0.518048 | 1.4:+911231 | None:intergenic |
| CTTTCATGGTTCATATGGAT+GGG | 0.519994 | 1.4:+911687 | None:intergenic |
| AAGTTTGAGTCATTATCTGA+TGG | 0.520066 | 1.4:+909494 | None:intergenic |
| CAGCAAATTTCTCCACCTCT+AGG | 0.522984 | 1.4:+911469 | None:intergenic |
| ATCAATCCCACGGGGACTGG+GGG | 0.524378 | 1.4:+911263 | None:intergenic |
| AGAGAAAGAGAAGGCAATTG+TGG | 0.526170 | 1.4:-910497 | MS.gene63999:CDS |
| ATCGAGTTTCGCCATAATCT+CGG | 0.528105 | 1.4:+911985 | None:intergenic |
| TTGTAGGCTTGTGATTTGGA+TGG | 0.529818 | 1.4:+909450 | None:intergenic |
| AGGAACCTCAGGATTAGAGC+AGG | 0.530360 | 1.4:+910603 | None:intergenic |
| AGCTTCTTCCACTCCTACAC+CGG | 0.531327 | 1.4:-909411 | MS.gene63999:CDS |
| GGAATTTCTGTATATTCTCG+AGG | 0.533704 | 1.4:+911904 | None:intergenic |
| TGCACTTGCACAAATGAAGC+TGG | 0.533816 | 1.4:-912024 | MS.gene63999:CDS |
| TCGGGAGAGAGATATCAAAA+TGG | 0.535384 | 1.4:-910646 | MS.gene63999:CDS |
| AGATGGTATAAGCCAAAAGA+TGG | 0.536768 | 1.4:-910875 | MS.gene63999:CDS |
| ATCAGAAGCTGGCACATCGA+CGG | 0.537438 | 1.4:+911089 | None:intergenic |
| ACTGACTTCAGATACATCAT+TGG | 0.542121 | 1.4:+911374 | None:intergenic |
| AGTGGAAGAAGCTGATGAAG+AGG | 0.542780 | 1.4:+909421 | None:intergenic |
| TTTGCAGGATCAGGTGGAGA+TGG | 0.543626 | 1.4:-909591 | MS.gene63999:CDS |
| GTTCATGATATATCTTCTGA+TGG | 0.544329 | 1.4:-910898 | MS.gene63999:CDS |
| AATTAGAGGCTGAGTGTCAA+AGG | 0.544913 | 1.4:-912085 | MS.gene63999:CDS |
| AAAGGTTACGTGGTCTAGTA+CGG | 0.546735 | 1.4:-912067 | MS.gene63999:CDS |
| AAGAAAAGAACATGAGTATG+AGG | 0.546898 | 1.4:-912160 | MS.gene63999:CDS |
| GCATCCTCAAACAGAACCAA+TGG | 0.547812 | 1.4:-909681 | MS.gene63999:CDS |
| CATGCATTTGAGTTGAGTCT+CGG | 0.550144 | 1.4:+910357 | None:intergenic |
| TACAGAGCGCTTATTGACAA+TGG | 0.550529 | 1.4:-911862 | MS.gene63999:CDS |
| ATTGAGATTAGAGAAAGAGA+AGG | 0.551379 | 1.4:-910506 | MS.gene63999:CDS |
| ACATGCTAAAGTAGCTGAAG+AGG | 0.551814 | 1.4:-912734 | MS.gene63999:CDS |
| GTTAGTTCAAGAAAATTCGT+CGG | 0.552800 | 1.4:-910665 | MS.gene63999:CDS |
| CAATTCCTCAAATTCCTCCA+TGG | 0.553870 | 1.4:+910525 | None:intergenic |
| CCAGACAAGTAATCAGCAGA+AGG | 0.556259 | 1.4:-911724 | MS.gene63999:CDS |
| CTGTCATTGCTTCTCTGCCA+AGG | 0.558008 | 1.4:+910920 | None:intergenic |
| GTGATCTTGAGGCTAGGATA+CGG | 0.560014 | 1.4:-912403 | MS.gene63999:CDS |
| AAAAGAATCTGCTAAAACCT+CGG | 0.562481 | 1.4:+909378 | None:intergenic |
| AGCAGCTTTGGCAAAGTGCA+AGG | 0.562788 | 1.4:-910215 | MS.gene63999:CDS |
| AGTGAGATATGGATAGAAGA+TGG | 0.564925 | 1.4:-913561 | None:intergenic |
| GAGTCATATTCACATCTGAC+GGG | 0.567613 | 1.4:-912883 | MS.gene63999:CDS |
| GATATATCTTCTGATGGAGA+TGG | 0.568592 | 1.4:-910892 | MS.gene63999:CDS |
| TTCAGCTACAGAGTCTTGGA+TGG | 0.569854 | 1.4:+911116 | None:intergenic |
| TGTGCAAGTGCAGCAGGACC+AGG | 0.570936 | 1.4:+912035 | None:intergenic |
| TCCTGCAAATTTGGGCTCCG+AGG | 0.575513 | 1.4:+909605 | None:intergenic |
| AAGCTGGAAGTTGAAAGTCT+TGG | 0.575557 | 1.4:-912008 | MS.gene63999:CDS |
| GACTAAGAAGTTAGAACTGA+TGG | 0.576324 | 1.4:-911499 | MS.gene63999:CDS |
| TGCCACAAAAGCTCAATGAC+CGG | 0.577103 | 1.4:+909340 | None:intergenic |
| CATCCTCAAACAGAACCAAT+GGG | 0.577158 | 1.4:-909680 | MS.gene63999:CDS |
| ATATATTGTTTCCTGACACT+CGG | 0.577345 | 1.4:+909730 | None:intergenic |
| TCACATGGAGTATCAGAAGC+TGG | 0.577531 | 1.4:+911078 | None:intergenic |
| CAAGATTAAGGGTGATCTTG+AGG | 0.577662 | 1.4:-912414 | MS.gene63999:CDS |
| TTGATCATAGGAGAGAGACT+TGG | 0.578161 | 1.4:-909774 | MS.gene63999:intron |
| ATGGCTAAGGATGCTGATGT+AGG | 0.582211 | 1.4:-911189 | MS.gene63999:CDS |
| GTTTGAAGTAAATGGCAAAG+AGG | 0.583585 | 1.4:+911419 | None:intergenic |
| TGAAAAGCTATCAATCCCAC+GGG | 0.590101 | 1.4:+911254 | None:intergenic |
| CACGTCACAAAAGTTCTCCA+TGG | 0.591616 | 1.4:-910542 | MS.gene63999:CDS |
| CAGGTCTGCTGCTGATAATG+CGG | 0.592535 | 1.4:-912360 | MS.gene63999:CDS |
| CAGGATCAGGTGGAGATGGA+CGG | 0.595264 | 1.4:-909587 | MS.gene63999:CDS |
| GTGAAAAGCTATCAATCCCA+CGG | 0.595662 | 1.4:+911253 | None:intergenic |
| CATGTTAGAGCGCTCCTGCA+AGG | 0.598974 | 1.4:+912325 | None:intergenic |
| TCACTGTACATAGATCCCAT+TGG | 0.599900 | 1.4:+909665 | None:intergenic |
| TCGAGGGAGAAATCAGGCAC+CGG | 0.602488 | 1.4:+911921 | None:intergenic |
| CAATCCCTGCTCTAATCCTG+AGG | 0.602697 | 1.4:-910608 | MS.gene63999:CDS |
| TTAAGGGTGATCTTGAGGCT+AGG | 0.602821 | 1.4:-912409 | MS.gene63999:CDS |
| AGCTAGAAGAACAATTGCAA+AGG | 0.604021 | 1.4:-910192 | MS.gene63999:intron |
| TGCTAACAAACAGCATATGG+AGG | 0.605040 | 1.4:-912126 | MS.gene63999:CDS |
| CGAGACTCAACTCAAATGCA+TGG | 0.608379 | 1.4:-910356 | MS.gene63999:CDS |
| TCAGGCACCGGAGAGAAATG+AGG | 0.609792 | 1.4:+911933 | None:intergenic |
| AGAGTCATATTCACATCTGA+CGG | 0.613513 | 1.4:-912884 | MS.gene63999:CDS |
| CAGACAAGTAATCAGCAGAA+GGG | 0.615118 | 1.4:-911723 | MS.gene63999:CDS |
| GAATTTCTGTATATTCTCGA+GGG | 0.615195 | 1.4:+911905 | None:intergenic |
| AGTGTTTGAATCTATGGCTA+AGG | 0.616003 | 1.4:-911202 | MS.gene63999:CDS |
| TGACGAATTGGGCAAATCTG+AGG | 0.616648 | 1.4:-911523 | MS.gene63999:CDS |
| GATCAGGCGTCACAGTTAGA+CGG | 0.617015 | 1.4:-912533 | MS.gene63999:CDS |
| GTTATCTGCATACACTCAGA+AGG | 0.621671 | 1.4:+910991 | None:intergenic |
| TATTGCTGTCGACCAAGACT+CGG | 0.624331 | 1.4:+911584 | None:intergenic |
| GATGGATGACTTCCTAGAGG+TGG | 0.638572 | 1.4:-911481 | MS.gene63999:CDS |
| TTTCCATACCCTTATAACCA+AGG | 0.638601 | 1.4:+910740 | None:intergenic |
| TGGTATAAGCCAAAAGATGG+AGG | 0.642588 | 1.4:-910872 | MS.gene63999:CDS |
| GCTAACAAACAGCATATGGA+GGG | 0.651485 | 1.4:-912125 | MS.gene63999:CDS |
| GGAACCTCAGGATTAGAGCA+GGG | 0.651732 | 1.4:+910604 | None:intergenic |
| AGAAAAGGTTCAGACACTTG+AGG | 0.656387 | 1.4:-912833 | MS.gene63999:CDS |
| GCTTCACAGAGCATCAACCT+CGG | 0.657044 | 1.4:-909622 | MS.gene63999:CDS |
| TGATGTAGGTAAGATCCTGA+AGG | 0.658649 | 1.4:-911175 | MS.gene63999:CDS |
| AAACACAGAGATAAATACCA+AGG | 0.669689 | 1.4:-912773 | MS.gene63999:CDS |
| TCTTTCGAAACTGACTGCTG+AGG | 0.670642 | 1.4:-912555 | MS.gene63999:CDS |
| ATTATGGCGAAACTCGATTG+CGG | 0.684534 | 1.4:-911980 | MS.gene63999:CDS |
| ACTGATGGATGACTTCCTAG+AGG | 0.703699 | 1.4:-911484 | MS.gene63999:CDS |
| GCTGAGTGTCAAAGGTTACG+TGG | 0.710643 | 1.4:-912077 | MS.gene63999:CDS |
| AGTGTTTGTAAAATGCAAAG+GGG | 0.712425 | 1.4:+909526 | None:intergenic |
| GTCACAAAAGTTCTCCATGG+AGG | 0.722043 | 1.4:-910539 | MS.gene63999:CDS |
| GAAAAGCTATCAATCCCACG+GGG | 0.825805 | 1.4:+911255 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATTGCTAAATTAG+AGG | - | chr1.4:910806-910825 | MS.gene63999:CDS | 15.0% |
| !! | TTCTTAGATTTCTATTTAAA+TGG | + | chr1.4:913099-913118 | None:intergenic | 15.0% |
| !!! | TCTTGCTTTTTTTTTTTATT+CGG | - | chr1.4:909892-909911 | MS.gene63999:CDS | 15.0% |
| !! | AAAAAAAAAAGCAAGACAAA+TGG | + | chr1.4:909888-909907 | None:intergenic | 20.0% |
| !! | ACTTACACATTATATGATAT+TGG | + | chr1.4:912751-912770 | None:intergenic | 20.0% |
| !! | ATTTAATATCCTTGGTTATA+AGG | - | chr1.4:912156-912175 | MS.gene63999:CDS | 20.0% |
| !! | TAAGAAATTCATTATCTTTC+TGG | + | chr1.4:911025-911044 | None:intergenic | 20.0% |
| !! | TAATGAAATTCAGACTAAAA+AGG | - | chr1.4:913027-913046 | MS.gene63999:intron | 20.0% |
| !! | TTTAATATCCTTGGTTATAA+GGG | - | chr1.4:912157-912176 | MS.gene63999:CDS | 20.0% |
| !!! | AGATTCAAGTATTTTTCATT+TGG | - | chr1.4:909613-909632 | MS.gene63999:CDS | 20.0% |
| !!! | TGAATTATTTTCTTGATCAT+AGG | - | chr1.4:913119-913138 | MS.gene63999:intron | 20.0% |
| !!! | TTTTTTTTTATTCGGCAATA+TGG | - | chr1.4:909900-909919 | MS.gene63999:CDS | 20.0% |
| ! | AAGTGTTTGTAAAATGCAAA+GGG | + | chr1.4:913383-913402 | None:intergenic | 25.0% |
| ! | AATATGACTCTACAGAAATT+TGG | + | chr1.4:910012-910031 | None:intergenic | 25.0% |
| ! | ATTTCATATAAGAAAAGGAC+TGG | - | chr1.4:909585-909604 | MS.gene63999:CDS | 25.0% |
| ! | ATTTGAACAGAACTTTAACT+CGG | + | chr1.4:910265-910284 | None:intergenic | 25.0% |
| ! | CAAAACTTGAAATGTTAACA+AGG | + | chr1.4:909670-909689 | None:intergenic | 25.0% |
| ! | CTAATAGACAAAGTAACAAA+AGG | + | chr1.4:912986-913005 | None:intergenic | 25.0% |
| ! | GAATTCAGATTTAATATCCT+TGG | - | chr1.4:912148-912167 | MS.gene63999:CDS | 25.0% |
| ! | TAATGTACTAATCATAAACC+CGG | + | chr1.4:909770-909789 | None:intergenic | 25.0% |
| ! | TACAAAACATATACCTGTTT+GGG | + | chr1.4:909451-909470 | None:intergenic | 25.0% |
| ! | TGATACGTTGAATTTAATCA+CGG | + | chr1.4:909513-909532 | None:intergenic | 25.0% |
| ! | TTCATAGGGTATATGTTTAT+TGG | - | chr1.4:909561-909580 | MS.gene63999:CDS | 25.0% |
| ! | TTGGCATTTCATATAAGAAA+AGG | - | chr1.4:909580-909599 | MS.gene63999:CDS | 25.0% |
| !! | AAAGTGTTTGTAAAATGCAA+AGG | + | chr1.4:913384-913403 | None:intergenic | 25.0% |
| !! | ACTTAGCAAACTTCAAATTT+TGG | - | chr1.4:911148-911167 | MS.gene63999:CDS | 25.0% |
| !! | GTCTTATTGTTTGAAGTAAA+TGG | + | chr1.4:911497-911516 | None:intergenic | 25.0% |
| !! | TTCTGCTTAATTTTTATGCA+TGG | - | chr1.4:909644-909663 | MS.gene63999:CDS | 25.0% |
| !! | TTTTCATCAAAAGGAAAAAC+CGG | - | chr1.4:913546-913565 | MS.gene63999:CDS | 25.0% |
| !!! | AAGTTTTGAAGAACAATTTC+TGG | - | chr1.4:909682-909701 | MS.gene63999:CDS | 25.0% |
| !!! | CTTTTGTTACTTTGTCTATT+AGG | - | chr1.4:912984-913003 | MS.gene63999:intron | 25.0% |
| !!! | TCTTGAACTAACTTATTTTC+AGG | + | chr1.4:912232-912251 | None:intergenic | 25.0% |
| AAAAGAATCTGCTAAAACCT+CGG | + | chr1.4:913530-913549 | None:intergenic | 30.0% | |
| AAACACAGAGATAAATACCA+AGG | - | chr1.4:910132-910151 | MS.gene63999:intron | 30.0% | |
| AAAGGAAACACTATACATCA+AGG | + | chr1.4:910234-910253 | None:intergenic | 30.0% | |
| AAGAAAAGAACATGAGTATG+AGG | - | chr1.4:910745-910764 | MS.gene63999:CDS | 30.0% | |
| AAGCAATTGGACAAGATTAA+GGG | - | chr1.4:910480-910499 | MS.gene63999:CDS | 30.0% | |
| AAGTTTGAGTCATTATCTGA+TGG | + | chr1.4:913414-913433 | None:intergenic | 30.0% | |
| AATGTACTAATCATAAACCC+GGG | + | chr1.4:909769-909788 | None:intergenic | 30.0% | |
| ACAGAAATTTGGACATAGTT+CGG | + | chr1.4:910001-910020 | None:intergenic | 30.0% | |
| AGAACATGAACTGAAAATAC+AGG | - | chr1.4:910437-910456 | MS.gene63999:CDS | 30.0% | |
| AGCTGAAGTTAAATCACAAT+TGG | - | chr1.4:912498-912517 | MS.gene63999:CDS | 30.0% | |
| AGTGAAGACATATGAAGAAA+AGG | - | chr1.4:910057-910076 | MS.gene63999:intron | 30.0% | |
| AGTGTTTGTAAAATGCAAAG+GGG | + | chr1.4:913382-913401 | None:intergenic | 30.0% | |
| ATAGACAAAGTAACAAAAGG+AGG | + | chr1.4:912983-913002 | None:intergenic | 30.0% | |
| ATATATTGTTTCCTGACACT+CGG | + | chr1.4:913178-913197 | None:intergenic | 30.0% | |
| ATATGCTTTCATGGTTCATA+TGG | + | chr1.4:911226-911245 | None:intergenic | 30.0% | |
| ATCATTACCATCTTCAGAAA+TGG | + | chr1.4:911285-911304 | None:intergenic | 30.0% | |
| ATTATGAAGCATACTAGATG+CGG | - | chr1.4:909786-909805 | MS.gene63999:intron | 30.0% | |
| ATTGAGATTAGAGAAAGAGA+AGG | - | chr1.4:912399-912418 | MS.gene63999:CDS | 30.0% | |
| CAGGAAACAATATATCTTCT+TGG | - | chr1.4:913183-913202 | MS.gene63999:intron | 30.0% | |
| CATAGTAAGTTAATGTTAGC+AGG | + | chr1.4:912897-912916 | None:intergenic | 30.0% | |
| CTACAAAACATATACCTGTT+TGG | + | chr1.4:909452-909471 | None:intergenic | 30.0% | |
| GAACATGTTTAATATCCTTC+AGG | + | chr1.4:911748-911767 | None:intergenic | 30.0% | |
| GAATTTCTGTATATTCTCGA+GGG | + | chr1.4:911003-911022 | None:intergenic | 30.0% | |
| GCTTTCTATTTGAATGGAAT+CGG | + | chr1.4:913060-913079 | None:intergenic | 30.0% | |
| GGAGGAATTAGAAATAGAAT+TGG | + | chr1.4:912965-912984 | None:intergenic | 30.0% | |
| GTTAGTTCAAGAAAATTCGT+CGG | - | chr1.4:912240-912259 | MS.gene63999:CDS | 30.0% | |
| GTTCATGATATATCTTCTGA+TGG | - | chr1.4:912007-912026 | MS.gene63999:CDS | 30.0% | |
| TAAACCCGGGATTAAAAAAA+AGG | + | chr1.4:909756-909775 | None:intergenic | 30.0% | |
| TGATACTCCATGTGATAAAA+AGG | - | chr1.4:911835-911854 | MS.gene63999:CDS | 30.0% | |
| TTAGATATGTGTTTGTGTGT+GGG | - | chr1.4:909816-909835 | MS.gene63999:intron | 30.0% | |
| TTAGTTCAAGAAAATTCGTC+GGG | - | chr1.4:912241-912260 | MS.gene63999:CDS | 30.0% | |
| TTCTCTTTCACATGATTCTA+CGG | + | chr1.4:910667-910686 | None:intergenic | 30.0% | |
| TTTAACTCGGGAAACAAAAA+AGG | + | chr1.4:910252-910271 | None:intergenic | 30.0% | |
| TTTAGATATGTGTTTGTGTG+TGG | - | chr1.4:909815-909834 | MS.gene63999:intron | 30.0% | |
| TTTGAACAGAACTTTAACTC+GGG | + | chr1.4:910264-910283 | None:intergenic | 30.0% | |
| ! | AGACAAATGGAGTATTAGTT+AGG | + | chr1.4:909875-909894 | None:intergenic | 30.0% |
| ! | AGCAGATTCTTTTCATCAAA+AGG | - | chr1.4:913537-913556 | MS.gene63999:CDS | 30.0% |
| ! | TTCAAATCACTCTTCTTTTC+AGG | + | chr1.4:911581-911600 | None:intergenic | 30.0% |
| !! | ATTCTTTTCTTTTGGGAGTT+GGG | + | chr1.4:911360-911379 | None:intergenic | 30.0% |
| !!! | TATGGCCTTTTTTTTAATCC+CGG | - | chr1.4:909748-909767 | MS.gene63999:CDS | 30.0% |
| !!! | TCAGATGATTTTTTCTTCCA+AGG | + | chr1.4:909370-909389 | None:intergenic | 30.0% |
| !!! | TTGAAGTTTGCTAAGTGTTT+TGG | + | chr1.4:911144-911163 | None:intergenic | 30.0% |
| AAATGGAATTAAATCCAGCC+TGG | + | chr1.4:913082-913101 | None:intergenic | 35.0% | |
| AAGTTCTGTTCAAATTCTCC+AGG | - | chr1.4:910270-910289 | MS.gene63999:CDS | 35.0% | |
| ACTGTCAGTGTTTGAATCTA+TGG | - | chr1.4:911697-911716 | MS.gene63999:CDS | 35.0% | |
| AGAAAAGAATGCTGACGAAT+TGG | - | chr1.4:911370-911389 | MS.gene63999:CDS | 35.0% | |
| AGAGTCATATTCACATCTGA+CGG | - | chr1.4:910021-910040 | MS.gene63999:intron | 35.0% | |
| AGATGGTATAAGCCAAAAGA+TGG | - | chr1.4:912030-912049 | MS.gene63999:CDS | 35.0% | |
| AGCATATACAGCCAAAATAC+AGG | - | chr1.4:911239-911258 | MS.gene63999:CDS | 35.0% | |
| AGCTAGAAGAACAATTGCAA+AGG | - | chr1.4:912713-912732 | MS.gene63999:intron | 35.0% | |
| AGTGTTTGAATCTATGGCTA+AGG | - | chr1.4:911703-911722 | MS.gene63999:CDS | 35.0% | |
| ATTCTTGATTGAAGATCTGC+TGG | + | chr1.4:911677-911696 | None:intergenic | 35.0% | |
| ATTGCGAATTTCAAGCTCTT+TGG | + | chr1.4:910724-910743 | None:intergenic | 35.0% | |
| CAAGCAATTGGACAAGATTA+AGG | - | chr1.4:910479-910498 | MS.gene63999:CDS | 35.0% | |
| CACAACAGTGGAATTTATGT+TGG | - | chr1.4:912820-912839 | MS.gene63999:CDS | 35.0% | |
| CTTAATCTTGTCCAATTGCT+TGG | + | chr1.4:910481-910500 | None:intergenic | 35.0% | |
| CTTTCATGGTTCATATGGAT+GGG | + | chr1.4:911221-911240 | None:intergenic | 35.0% | |
| GAAAAGAATGCTGACGAATT+GGG | - | chr1.4:911371-911390 | MS.gene63999:CDS | 35.0% | |
| GAAACTGAACCAAAATCTTC+AGG | + | chr1.4:911866-911885 | None:intergenic | 35.0% | |
| GACTAAGAAGTTAGAACTGA+TGG | - | chr1.4:911406-911425 | MS.gene63999:CDS | 35.0% | |
| GATAAATACCAAGGAAGCTT+TGG | - | chr1.4:910141-910160 | MS.gene63999:intron | 35.0% | |
| GATATATCTTCTGATGGAGA+TGG | - | chr1.4:912013-912032 | MS.gene63999:CDS | 35.0% | |
| GATGTCAAATTTCCATCATC+AGG | + | chr1.4:912325-912344 | None:intergenic | 35.0% | |
| GCAATCTTATCTATGCAATC+AGG | + | chr1.4:912205-912224 | None:intergenic | 35.0% | |
| GGAATTTCTGTATATTCTCG+AGG | + | chr1.4:911004-911023 | None:intergenic | 35.0% | |
| GGGATTTGAACTTGCATAAT+TGG | - | chr1.4:909836-909855 | MS.gene63999:intron | 35.0% | |
| TAAATTCCACTGTTGTGAAC+AGG | + | chr1.4:912817-912836 | None:intergenic | 35.0% | |
| TATCCTTGGTTATAAGGGTA+TGG | - | chr1.4:912162-912181 | MS.gene63999:CDS | 35.0% | |
| TCAGTTCATGTTCTTCTTTC+AGG | + | chr1.4:910431-910450 | None:intergenic | 35.0% | |
| TCTTGATCTGTCTCATTTCT+TGG | - | chr1.4:912114-912133 | MS.gene63999:CDS | 35.0% | |
| TGGTTTGAGTAAGAAAACGT+AGG | - | chr1.4:912840-912859 | MS.gene63999:CDS | 35.0% | |
| TTATGAAGCATACTAGATGC+GGG | - | chr1.4:909787-909806 | MS.gene63999:intron | 35.0% | |
| TTCCATTCAAATAGAAAGCC+AGG | - | chr1.4:913061-913080 | MS.gene63999:intron | 35.0% | |
| TTCTATTTGAATGGAATCGG+TGG | + | chr1.4:913057-913076 | None:intergenic | 35.0% | |
| TTTCCATACCCTTATAACCA+AGG | + | chr1.4:912168-912187 | None:intergenic | 35.0% | |
| TTTCTGTCTTCATTCGTAGA+TGG | + | chr1.4:912630-912649 | None:intergenic | 35.0% | |
| TTTGGCTGTATATGCTTTCA+TGG | + | chr1.4:911235-911254 | None:intergenic | 35.0% | |
| ! | AAGGATGATCCTGAAGATTT+TGG | - | chr1.4:911854-911873 | MS.gene63999:CDS | 35.0% |
| ! | ACTGACTTCAGATACATCAT+TGG | + | chr1.4:911534-911553 | None:intergenic | 35.0% |
| ! | ATGATCTCCATTTCTGAAGA+TGG | - | chr1.4:911275-911294 | MS.gene63999:CDS | 35.0% |
| ! | CGTCAGCATTCTTTTCTTTT+GGG | + | chr1.4:911367-911386 | None:intergenic | 35.0% |
| ! | GGATCATCCTTTTTATCACA+TGG | + | chr1.4:911845-911864 | None:intergenic | 35.0% |
| ! | GTTTGAAGTAAATGGCAAAG+AGG | + | chr1.4:911489-911508 | None:intergenic | 35.0% |
| ! | TCGTCAGCATTCTTTTCTTT+TGG | + | chr1.4:911368-911387 | None:intergenic | 35.0% |
| ! | TTCATATGGATGGGAGATTT+TGG | + | chr1.4:911212-911231 | None:intergenic | 35.0% |
| !! | AGTCTCTTACTTTTCTGCTA+TGG | - | chr1.4:909730-909749 | MS.gene63999:CDS | 35.0% |
| !! | CAATTGCTTGGTTTTTGCAA+GGG | + | chr1.4:910469-910488 | None:intergenic | 35.0% |
| !! | CATTCTTTTCTTTTGGGAGT+TGG | + | chr1.4:911361-911380 | None:intergenic | 35.0% |
| !! | CTTCAAATTTTGGAAGCACA+AGG | - | chr1.4:911158-911177 | MS.gene63999:CDS | 35.0% |
| !! | TTGTTTTACCAAAGCTTCCT+TGG | + | chr1.4:910152-910171 | None:intergenic | 35.0% |
| !!! | ATGGCCTTTTTTTTAATCCC+GGG | - | chr1.4:909749-909768 | MS.gene63999:CDS | 35.0% |
| AAAACGTAACAGCGAATTGC+AGG | - | chr1.4:911100-911119 | MS.gene63999:CDS | 40.0% | |
| AAAGGTTACGTGGTCTAGTA+CGG | - | chr1.4:910838-910857 | MS.gene63999:CDS | 40.0% | |
| AACTTCAGCTAGAAGTTGCT+CGG | + | chr1.4:912488-912507 | None:intergenic | 40.0% | |
| AAGCTGGAAGTTGAAAGTCT+TGG | - | chr1.4:910897-910916 | MS.gene63999:CDS | 40.0% | |
| AATTAGAGGCTGAGTGTCAA+AGG | - | chr1.4:910820-910839 | MS.gene63999:CDS | 40.0% | |
| ACATGCTAAAGTAGCTGAAG+AGG | - | chr1.4:910171-910190 | MS.gene63999:intron | 40.0% | |
| ACTTTGAACAGGAACTTCTC+AGG | - | chr1.4:910526-910545 | MS.gene63999:CDS | 40.0% | |
| AGAAAAGGTTCAGACACTTG+AGG | - | chr1.4:910072-910091 | MS.gene63999:intron | 40.0% | |
| AGAGAAAGAGAAGGCAATTG+TGG | - | chr1.4:912408-912427 | MS.gene63999:CDS | 40.0% | |
| AGCTGCTAACAAACAGCATA+TGG | - | chr1.4:910776-910795 | MS.gene63999:CDS | 40.0% | |
| ATATTCTCGAGGGAGAAATC+AGG | + | chr1.4:910993-911012 | None:intergenic | 40.0% | |
| ATCGAGTTTCGCCATAATCT+CGG | + | chr1.4:910923-910942 | None:intergenic | 40.0% | |
| ATTATGGCGAAACTCGATTG+CGG | - | chr1.4:910925-910944 | MS.gene63999:CDS | 40.0% | |
| ATTCAAATAGAAAGCCAGGC+TGG | - | chr1.4:913065-913084 | MS.gene63999:intron | 40.0% | |
| CAACGTATCAGTGTTATGTC+CGG | - | chr1.4:909523-909542 | MS.gene63999:CDS | 40.0% | |
| CAAGATTAAGGGTGATCTTG+AGG | - | chr1.4:910491-910510 | MS.gene63999:CDS | 40.0% | |
| CAATTCCTCAAATTCCTCCA+TGG | + | chr1.4:912383-912402 | None:intergenic | 40.0% | |
| CAGACAAGTAATCAGCAGAA+GGG | - | chr1.4:911182-911201 | MS.gene63999:CDS | 40.0% | |
| CATACACTCAGAAGGTTCTT+GGG | + | chr1.4:911909-911928 | None:intergenic | 40.0% | |
| CATCCTCAAACAGAACCAAT+GGG | - | chr1.4:913225-913244 | MS.gene63999:intron | 40.0% | |
| CCTTGCAAAAACCAAGCAAT+TGG | - | chr1.4:910467-910486 | MS.gene63999:CDS | 40.0% | |
| CTAGTACGGAAAAAGTTACC+TGG | - | chr1.4:910852-910871 | MS.gene63999:CDS | 40.0% | |
| CTCGGATATATCATCTTTGC+TGG | + | chr1.4:911558-911577 | None:intergenic | 40.0% | |
| GAATTTCAGCTACAGAGTCT+TGG | + | chr1.4:911796-911815 | None:intergenic | 40.0% | |
| GACTTTGTAGGCTTGTGATT+TGG | + | chr1.4:913462-913481 | None:intergenic | 40.0% | |
| GAGTCATATTCACATCTGAC+GGG | - | chr1.4:910022-910041 | MS.gene63999:intron | 40.0% | |
| GCTAACAAACAGCATATGGA+GGG | - | chr1.4:910780-910799 | MS.gene63999:CDS | 40.0% | |
| GCTTTCATGGTTCATATGGA+TGG | + | chr1.4:911222-911241 | None:intergenic | 40.0% | |
| GTCTGTGTCAATGCTTCATA+GGG | - | chr1.4:909547-909566 | MS.gene63999:CDS | 40.0% | |
| GTGAAAAGCTATCAATCCCA+CGG | + | chr1.4:911655-911674 | None:intergenic | 40.0% | |
| GTTATCTGCATACACTCAGA+AGG | + | chr1.4:911917-911936 | None:intergenic | 40.0% | |
| TAGGATACGGAACTTTGAAC+AGG | - | chr1.4:910515-910534 | MS.gene63999:CDS | 40.0% | |
| TCACTGTACATAGATCCCAT+TGG | + | chr1.4:913243-913262 | None:intergenic | 40.0% | |
| TCGGGAGAGAGATATCAAAA+TGG | - | chr1.4:912259-912278 | MS.gene63999:CDS | 40.0% | |
| TGAAAAGCTATCAATCCCAC+GGG | + | chr1.4:911654-911673 | None:intergenic | 40.0% | |
| TGAAGAAAAAGCTCATGCTG+AGG | - | chr1.4:910617-910636 | MS.gene63999:CDS | 40.0% | |
| TGAGAAAGTTGCTGCTGAAT+TGG | - | chr1.4:909402-909421 | MS.gene63999:CDS | 40.0% | |
| TGAGGACTAGAAGGTTTAAC+AGG | + | chr1.4:910957-910976 | None:intergenic | 40.0% | |
| TGATGTAGGTAAGATCCTGA+AGG | - | chr1.4:911730-911749 | MS.gene63999:CDS | 40.0% | |
| TGCATCTAATCAACCCAAAC+AGG | - | chr1.4:909435-909454 | MS.gene63999:CDS | 40.0% | |
| TGCTAACAAACAGCATATGG+AGG | - | chr1.4:910779-910798 | MS.gene63999:CDS | 40.0% | |
| TGGTATAAGCCAAAAGATGG+AGG | - | chr1.4:912033-912052 | MS.gene63999:CDS | 40.0% | |
| TGTCTGTGTCAATGCTTCAT+AGG | - | chr1.4:909546-909565 | MS.gene63999:CDS | 40.0% | |
| TTCTAGTCCTCATTTCTCTC+CGG | - | chr1.4:910965-910984 | MS.gene63999:CDS | 40.0% | |
| TTGATCATAGGAGAGAGACT+TGG | - | chr1.4:913131-913150 | MS.gene63999:intron | 40.0% | |
| ! | AGCCTGGCTTTCTATTTGAA+TGG | + | chr1.4:913066-913085 | None:intergenic | 40.0% |
| ! | CAGAAAACTCCTCCATCTTT+TGG | + | chr1.4:912045-912064 | None:intergenic | 40.0% |
| ! | GTACAGTGAGAAGCTTTTGA+AGG | - | chr1.4:913254-913273 | MS.gene63999:intron | 40.0% |
| ! | TACAGAGCGCTTATTGACAA+TGG | - | chr1.4:911043-911062 | MS.gene63999:CDS | 40.0% |
| ! | TTGCTGCATAGCCTGTATTT+TGG | + | chr1.4:911253-911272 | None:intergenic | 40.0% |
| ! | TTGTAGGCTTGTGATTTGGA+TGG | + | chr1.4:913458-913477 | None:intergenic | 40.0% |
| ! | TTGTGATTTGGATGGTGTAC+AGG | + | chr1.4:913450-913469 | None:intergenic | 40.0% |
| !! | ATATTCACATCTGACGGGTT+TGG | - | chr1.4:910027-910046 | MS.gene63999:intron | 40.0% |
| !! | ATCACTCTTCTTTTCAGGCT+CGG | + | chr1.4:911576-911595 | None:intergenic | 40.0% |
| !! | CATGCATTTGAGTTGAGTCT+CGG | + | chr1.4:912551-912570 | None:intergenic | 40.0% |
| !! | CCAATTGCTTGGTTTTTGCA+AGG | + | chr1.4:910470-910489 | None:intergenic | 40.0% |
| !! | GAGAAGCTTTTGAAGGTTGA+AGG | - | chr1.4:913261-913280 | MS.gene63999:intron | 40.0% |
| !! | TTGCTTTTGCTTATGCAAGC+AGG | - | chr1.4:909961-909980 | MS.gene63999:intron | 40.0% |
| AAAGGCAGAAGCAGAAGCTT+TGG | - | chr1.4:910299-910318 | MS.gene63999:CDS | 45.0% | |
| AAATTCTCCAGGCTGGGAAA+AGG | - | chr1.4:910281-910300 | MS.gene63999:CDS | 45.0% | |
| AATCCTGAGGTTCCTGATGA+TGG | - | chr1.4:912310-912329 | MS.gene63999:CDS | 45.0% | |
| ACTCCTACACCGGAAAAACA+TGG | - | chr1.4:913504-913523 | MS.gene63999:CDS | 45.0% | |
| AGTGGAAGAAGCTGATGAAG+AGG | + | chr1.4:913487-913506 | None:intergenic | 45.0% | |
| ATCACTTGAAACACGTGCAC+AGG | - | chr1.4:912585-912604 | MS.gene63999:CDS | 45.0% | |
| ATGGCTAAGGATGCTGATGT+AGG | - | chr1.4:911716-911735 | MS.gene63999:CDS | 45.0% | |
| CACGTCACAAAAGTTCTCCA+TGG | - | chr1.4:912363-912382 | MS.gene63999:CDS | 45.0% | |
| CAGCAAATTTCTCCACCTCT+AGG | + | chr1.4:911439-911458 | None:intergenic | 45.0% | |
| CATAATCCATTCCTACTCGC+AGG | - | chr1.4:912791-912810 | MS.gene63999:CDS | 45.0% | |
| CCACCTGATCCTGCAAATTT+GGG | + | chr1.4:913311-913330 | None:intergenic | 45.0% | |
| CCAGACAAGTAATCAGCAGA+AGG | - | chr1.4:911181-911200 | MS.gene63999:CDS | 45.0% | |
| CGAGACTCAACTCAAATGCA+TGG | - | chr1.4:912549-912568 | MS.gene63999:CDS | 45.0% | |
| CTAGAGGTGGAGAAATTTGC+TGG | - | chr1.4:911437-911456 | MS.gene63999:CDS | 45.0% | |
| CTGTTCAAATTCTCCAGGCT+GGG | - | chr1.4:910275-910294 | MS.gene63999:CDS | 45.0% | |
| GAAAAGCTATCAATCCCACG+GGG | + | chr1.4:911653-911672 | None:intergenic | 45.0% | |
| GAAAGTCTTGGCCGAGATTA+TGG | - | chr1.4:910909-910928 | MS.gene63999:CDS | 45.0% | |
| GAGATCTCATGAAGCAGCTT+TGG | - | chr1.4:912678-912697 | MS.gene63999:intron | 45.0% | |
| GCATACACTCAGAAGGTTCT+TGG | + | chr1.4:911910-911929 | None:intergenic | 45.0% | |
| GCATCCTCAAACAGAACCAA+TGG | - | chr1.4:913224-913243 | MS.gene63999:intron | 45.0% | |
| GGAGAGAAATGAGGACTAGA+AGG | + | chr1.4:910966-910985 | None:intergenic | 45.0% | |
| GTCACAAAAGTTCTCCATGG+AGG | - | chr1.4:912366-912385 | MS.gene63999:CDS | 45.0% | |
| GTGATCTTGAGGCTAGGATA+CGG | - | chr1.4:910502-910521 | MS.gene63999:CDS | 45.0% | |
| GTTCTCCATGGAGGAATTTG+AGG | - | chr1.4:912375-912394 | MS.gene63999:CDS | 45.0% | |
| TATTGCTGTCGACCAAGACT+CGG | + | chr1.4:911324-911343 | None:intergenic | 45.0% | |
| TCCACCTGATCCTGCAAATT+TGG | + | chr1.4:913312-913331 | None:intergenic | 45.0% | |
| TCTGTTCAAATTCTCCAGGC+TGG | - | chr1.4:910274-910293 | MS.gene63999:CDS | 45.0% | |
| TCTTTCGAAACTGACTGCTG+AGG | - | chr1.4:910350-910369 | MS.gene63999:CDS | 45.0% | |
| TGAAAAGTTAGCCGAGTGTC+AGG | - | chr1.4:913164-913183 | MS.gene63999:intron | 45.0% | |
| TGACGAATTGGGCAAATCTG+AGG | - | chr1.4:911382-911401 | MS.gene63999:CDS | 45.0% | |
| TGCACTTGCACAAATGAAGC+TGG | - | chr1.4:910881-910900 | MS.gene63999:CDS | 45.0% | |
| TGGATGGTGTACAGGAGATA+TGG | + | chr1.4:913442-913461 | None:intergenic | 45.0% | |
| TTAAGGGTGATCTTGAGGCT+AGG | - | chr1.4:910496-910515 | MS.gene63999:CDS | 45.0% | |
| TTCAGCTACAGAGTCTTGGA+TGG | + | chr1.4:911792-911811 | None:intergenic | 45.0% | |
| TTCATTTGTGCAAGTGCAGC+AGG | + | chr1.4:910879-910898 | None:intergenic | 45.0% | |
| TTTCCATCATCAGGAACCTC+AGG | + | chr1.4:912316-912335 | None:intergenic | 45.0% | |
| ! | AAACCTCGGCCATGTTTTTC+CGG | + | chr1.4:913516-913535 | None:intergenic | 45.0% |
| ! | ACTGATGGATGACTTCCTAG+AGG | - | chr1.4:911421-911440 | MS.gene63999:CDS | 45.0% |
| ! | ACTGCAGCAAACTTGCTTCA+TGG | + | chr1.4:912090-912109 | None:intergenic | 45.0% |
| ! | ATGTTTTTCCGGTGTAGGAG+TGG | + | chr1.4:913505-913524 | None:intergenic | 45.0% |
| ! | CACAATTGGCTTCTGCTCAA+AGG | - | chr1.4:912512-912531 | MS.gene63999:CDS | 45.0% |
| ! | CCTTCTGCTGATTACTTGTC+TGG | + | chr1.4:911184-911203 | None:intergenic | 45.0% |
| ! | GATGAAGAGGCTGACTTTGT+AGG | + | chr1.4:913474-913493 | None:intergenic | 45.0% |
| ! | TCACATGGAGTATCAGAAGC+TGG | + | chr1.4:911830-911849 | None:intergenic | 45.0% |
| !! | GATCCCATTGGTTCTGTTTG+AGG | + | chr1.4:913231-913250 | None:intergenic | 45.0% |
| !! | TGAAGCATTGACACAGACAC+CGG | + | chr1.4:909545-909564 | None:intergenic | 45.0% |
| AGCTTCTTCCACTCCTACAC+CGG | - | chr1.4:913494-913513 | MS.gene63999:CDS | 50.0% | |
| AGGAACCTCAGGATTAGAGC+AGG | + | chr1.4:912305-912324 | None:intergenic | 50.0% | |
| ATCAGAAGCTGGCACATCGA+CGG | + | chr1.4:911819-911838 | None:intergenic | 50.0% | |
| CAATCCCTGCTCTAATCCTG+AGG | - | chr1.4:912297-912316 | MS.gene63999:CDS | 50.0% | |
| CCCAAATTTGCAGGATCAGG+TGG | - | chr1.4:913308-913327 | MS.gene63999:intron | 50.0% | |
| CTGTCATTGCTTCTCTGCCA+AGG | + | chr1.4:911988-912007 | None:intergenic | 50.0% | |
| GAAACTGACTGCTGAGGATC+AGG | - | chr1.4:910356-910375 | MS.gene63999:CDS | 50.0% | |
| GAGCCCAAATTTGCAGGATC+AGG | - | chr1.4:913305-913324 | MS.gene63999:intron | 50.0% | |
| GATCAGGCGTCACAGTTAGA+CGG | - | chr1.4:910372-910391 | MS.gene63999:CDS | 50.0% | |
| GATGGATGACTTCCTAGAGG+TGG | - | chr1.4:911424-911443 | MS.gene63999:CDS | 50.0% | |
| GCTGAGTGTCAAAGGTTACG+TGG | - | chr1.4:910828-910847 | MS.gene63999:CDS | 50.0% | |
| GGAACCTCAGGATTAGAGCA+GGG | + | chr1.4:912304-912323 | None:intergenic | 50.0% | |
| TTTGCAGGATCAGGTGGAGA+TGG | - | chr1.4:913314-913333 | MS.gene63999:intron | 50.0% | |
| ! | AGCAGCTTTGGCAAAGTGCA+AGG | - | chr1.4:912690-912709 | MS.gene63999:intron | 50.0% |
| ! | CACGACTTCGTGTTGTTCCT+TGG | - | chr1.4:911968-911987 | MS.gene63999:CDS | 50.0% |
| ! | CAGGTCTGCTGCTGATAATG+CGG | - | chr1.4:910545-910564 | MS.gene63999:CDS | 50.0% |
| ! | CTGATAATGCGGCTCTGTCT+AGG | - | chr1.4:910556-910575 | MS.gene63999:CDS | 50.0% |
| ! | GCTTCACAGAGCATCAACCT+CGG | - | chr1.4:913283-913302 | MS.gene63999:intron | 50.0% |
| !! | GGAGACTCTTGGCTTTGCAA+TGG | + | chr1.4:911605-911624 | None:intergenic | 50.0% |
| !! | TTCACATCTGACGGGTTTGG+AGG | - | chr1.4:910030-910049 | MS.gene63999:intron | 50.0% |
| AACAGGCCTGCGAGTAGGAA+TGG | + | chr1.4:912800-912819 | None:intergenic | 55.0% | |
| ACACCGGAAAAACATGGCCG+AGG | - | chr1.4:913510-913529 | MS.gene63999:CDS | 55.0% | |
| ACCTCGGAGCCCAAATTTGC+AGG | - | chr1.4:913299-913318 | MS.gene63999:intron | 55.0% | |
| ATCCTGCAGCAGGAGACTCT+TGG | + | chr1.4:911616-911635 | None:intergenic | 55.0% | |
| CAGGATCAGGTGGAGATGGA+CGG | - | chr1.4:913318-913337 | MS.gene63999:intron | 55.0% | |
| CGAGAAGTTGTGCCGAGTCT+TGG | - | chr1.4:911309-911328 | MS.gene63999:CDS | 55.0% | |
| CTATCAATCCCACGGGGACT+GGG | + | chr1.4:911647-911666 | None:intergenic | 55.0% | |
| GCTGCTGAATTGGACTCTGC+TGG | - | chr1.4:909412-909431 | MS.gene63999:CDS | 55.0% | |
| GTAGCTGAAGAGGCTGTCTC+AGG | - | chr1.4:910181-910200 | MS.gene63999:intron | 55.0% | |
| TATCAATCCCACGGGGACTG+GGG | + | chr1.4:911646-911665 | None:intergenic | 55.0% | |
| TCAGAAGCTGGCACATCGAC+GGG | + | chr1.4:911818-911837 | None:intergenic | 55.0% | |
| TCCTGCAAATTTGGGCTCCG+AGG | + | chr1.4:913303-913322 | None:intergenic | 55.0% | |
| TCGAGGGAGAAATCAGGCAC+CGG | + | chr1.4:910987-911006 | None:intergenic | 55.0% | |
| TTGTGAACAGGCCTGCGAGT+AGG | + | chr1.4:912805-912824 | None:intergenic | 55.0% | |
| ! | CATGTTAGAGCGCTCCTGCA+AGG | + | chr1.4:910583-910602 | None:intergenic | 55.0% |
| ! | CGGCCATGTTTTTCCGGTGT+AGG | + | chr1.4:913510-913529 | None:intergenic | 55.0% |
| !! | TCAGGCACCGGAGAGAAATG+AGG | + | chr1.4:910975-910994 | None:intergenic | 55.0% |
| AGCCAAGAGTCTCCTGCTGC+AGG | - | chr1.4:911611-911630 | MS.gene63999:CDS | 60.0% | |
| ATCAATCCCACGGGGACTGG+GGG | + | chr1.4:911645-911664 | None:intergenic | 60.0% | |
| CGCAGGCCTGTTCACAACAG+TGG | - | chr1.4:912808-912827 | MS.gene63999:CDS | 60.0% | |
| GCTATCAATCCCACGGGGAC+TGG | + | chr1.4:911648-911667 | None:intergenic | 60.0% | |
| GGCTCTGTCTAGGTCCTTGC+AGG | - | chr1.4:910566-910585 | MS.gene63999:CDS | 60.0% | |
| TGTGCAAGTGCAGCAGGACC+AGG | + | chr1.4:910873-910892 | None:intergenic | 60.0% | |
| ! | GCTTCTGCCTTTTCCCAGCC+TGG | + | chr1.4:910291-910310 | None:intergenic | 60.0% |
| ! | GGGGCTGGTGATCCTGCAGC+AGG | + | chr1.4:911626-911645 | None:intergenic | 70.0% |
| ATCCCACGGGGACTGGGGGC+TGG | + | chr1.4:911641-911660 | None:intergenic | 75.0% | |
| CACCAGCCCCCAGTCCCCGT+GGG | - | chr1.4:911636-911655 | MS.gene63999:CDS | 75.0% | |
| TCACCAGCCCCCAGTCCCCG+TGG | - | chr1.4:911635-911654 | MS.gene63999:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 909352 | 913575 | 909352 | ID=MS.gene63999 |
| chr1.4 | mRNA | 909352 | 913575 | 909352 | ID=MS.gene63999.t1;Parent=MS.gene63999 |
| chr1.4 | exon | 913471 | 913575 | 913471 | ID=MS.gene63999.t1.exon1;Parent=MS.gene63999.t1 |
| chr1.4 | CDS | 913471 | 913575 | 913471 | ID=cds.MS.gene63999.t1;Parent=MS.gene63999.t1 |
| chr1.4 | exon | 912725 | 912944 | 912725 | ID=MS.gene63999.t1.exon2;Parent=MS.gene63999.t1 |
| chr1.4 | CDS | 912725 | 912944 | 912725 | ID=cds.MS.gene63999.t1;Parent=MS.gene63999.t1 |
| chr1.4 | exon | 910193 | 912635 | 910193 | ID=MS.gene63999.t1.exon3;Parent=MS.gene63999.t1 |
| chr1.4 | CDS | 910193 | 912635 | 910193 | ID=cds.MS.gene63999.t1;Parent=MS.gene63999.t1 |
| chr1.4 | exon | 909879 | 909921 | 909879 | ID=MS.gene63999.t1.exon4;Parent=MS.gene63999.t1 |
| chr1.4 | CDS | 909879 | 909921 | 909879 | ID=cds.MS.gene63999.t1;Parent=MS.gene63999.t1 |
| chr1.4 | exon | 909352 | 909786 | 909352 | ID=MS.gene63999.t1.exon5;Parent=MS.gene63999.t1 |
| chr1.4 | CDS | 909352 | 909786 | 909352 | ID=cds.MS.gene63999.t1;Parent=MS.gene63999.t1 |
| Gene Sequence |
| Protein sequence |
