Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64014.t1 | RHN77606.1 | 87 | 539 | 66 | 2 | 1 | 537 | 84 | 620 | 2.50E-256 | 894.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64014.t1 | A0A396JH99 | 87.0 | 539 | 66 | 2 | 1 | 537 | 84 | 620 | 1.8e-256 | 894.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052188 | MS.gene64014 | 0.807056 | 6.09E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene64014 | 0.803712 | 3.06E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene64014 | 0.804478 | 2.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64014.t1 | MTR_1g025180 | 87.013 | 539 | 66 | 2 | 1 | 537 | 84 | 620 | 0.0 | 943 |
| MS.gene64014.t1 | MTR_1g025180 | 86.412 | 471 | 60 | 2 | 69 | 537 | 1 | 469 | 0.0 | 817 |
| MS.gene64014.t1 | MTR_3g113840 | 42.657 | 572 | 258 | 17 | 1 | 517 | 75 | 631 | 1.56e-99 | 315 |
| MS.gene64014.t1 | MTR_3g113840 | 42.657 | 572 | 258 | 17 | 1 | 517 | 75 | 631 | 3.35e-99 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 107 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTCTTTGGGACCAATTT+TGG | 0.079863 | 1.4:-732274 | None:intergenic |
| CACTTTGCCAATTAGGATTC+TGG | 0.106907 | 1.4:-734977 | None:intergenic |
| TTGCTTGCTATCAAAATTTC+TGG | 0.161491 | 1.4:-733539 | None:intergenic |
| CATATTGAGTTCCATATAAT+TGG | 0.201785 | 1.4:-734857 | None:intergenic |
| ATTCTATTCCATTGATCTTA+TGG | 0.219201 | 1.4:-732099 | None:intergenic |
| CATCAAGTTCCTTGATAATA+TGG | 0.221055 | 1.4:-732382 | None:intergenic |
| TTTCTTCCACTTTGCCAATT+AGG | 0.222523 | 1.4:-734984 | None:intergenic |
| TGGTCCCAAAGAGGAGTTTC+TGG | 0.248234 | 1.4:+732281 | MS.gene64014:CDS |
| CCTACATCACAAGAAATATT+TGG | 0.257970 | 1.4:+735059 | MS.gene64014:CDS |
| TATTATGGTAGCCAATTATA+TGG | 0.264395 | 1.4:+734846 | MS.gene64014:CDS |
| CTCTGAGAGGGCAAAGTTAT+TGG | 0.268120 | 1.4:+733156 | MS.gene64014:CDS |
| ACTTGATGGAGAACCTTTCT+TGG | 0.282998 | 1.4:+732397 | MS.gene64014:CDS |
| TTGCAACAACCTCGTTATTA+TGG | 0.286639 | 1.4:+734831 | MS.gene64014:CDS |
| TTCGCGACCGCGCTTCTTCA+TGG | 0.287658 | 1.4:-732047 | None:intergenic |
| CTTGATCATCTGACTGTTGT+AGG | 0.310869 | 1.4:+734352 | MS.gene64014:CDS |
| CAATTATATGGAACTCAATA+TGG | 0.313814 | 1.4:+734858 | MS.gene64014:CDS |
| TCCTTGTCAACTGGAAGTTA+TGG | 0.329835 | 1.4:+734178 | MS.gene64014:CDS |
| AACTGGAAGTTATGGATTAA+AGG | 0.337379 | 1.4:+734186 | MS.gene64014:CDS |
| AACAGGAAATTGGCCAAAAT+TGG | 0.342250 | 1.4:+732261 | MS.gene64014:CDS |
| TGTGCTATTGACTGAAAATA+AGG | 0.344592 | 1.4:-734271 | None:intergenic |
| AACTTGAACAGAATGATAAA+TGG | 0.345807 | 1.4:+733935 | MS.gene64014:CDS |
| AAGATCTTGCCCATTTATCT+TGG | 0.348923 | 1.4:-735133 | None:intergenic |
| ACTTTGCCAATTAGGATTCT+GGG | 0.349503 | 1.4:-734976 | None:intergenic |
| ATGCCATTCTTACTTTCATT+AGG | 0.351418 | 1.4:-733986 | None:intergenic |
| GCTTCAACATCTGGAGTATA+TGG | 0.354662 | 1.4:+734049 | MS.gene64014:CDS |
| CGTGGACCCAGAATCCTAAT+TGG | 0.355576 | 1.4:+734970 | MS.gene64014:CDS |
| TATTCCAGATTAAATATAAC+TGG | 0.356000 | 1.4:+733372 | MS.gene64014:intron |
| CGACTTTGATGCATAGGAAT+TGG | 0.356624 | 1.4:-734310 | None:intergenic |
| TTCATGACACCCACGAAGAT+TGG | 0.376617 | 1.4:-733864 | None:intergenic |
| ATCGAAGTATCGAGTTCTTT+CGG | 0.379175 | 1.4:+733904 | MS.gene64014:CDS |
| AATGTTAATGCTTCTCTTGA+AGG | 0.380928 | 1.4:+732452 | MS.gene64014:CDS |
| CCAAATATTTCTTGTGATGT+AGG | 0.384332 | 1.4:-735059 | None:intergenic |
| GGGTATGAGGAAAGATGATT+TGG | 0.386388 | 1.4:-735037 | None:intergenic |
| TAGAACCAGAAACTCCTCTT+TGG | 0.387132 | 1.4:-732286 | None:intergenic |
| AATCTCTTGTCCTTGTCAAC+TGG | 0.388105 | 1.4:+734169 | MS.gene64014:CDS |
| TCTTGTGATGTAGGGGTATG+AGG | 0.395732 | 1.4:-735050 | None:intergenic |
| TCCAACGATTGAAGTAATCT+TGG | 0.396123 | 1.4:-735084 | None:intergenic |
| TCACAGGCTGCTTCAACATC+TGG | 0.416938 | 1.4:+734040 | MS.gene64014:CDS |
| ATTATAACAAAGTTCGAAGT+AGG | 0.420427 | 1.4:+734221 | MS.gene64014:CDS |
| CATATTATCAAGGAACTTGA+TGG | 0.420827 | 1.4:+732383 | MS.gene64014:CDS |
| GGTATGAGGAAAGATGATTT+GGG | 0.428294 | 1.4:-735036 | None:intergenic |
| CAAATATTTCTTGTGATGTA+GGG | 0.435409 | 1.4:-735058 | None:intergenic |
| TCTGAGTTATGTCTAGCAAT+GGG | 0.437335 | 1.4:+733271 | MS.gene64014:CDS |
| TCTTGCCCATTTATCTTGGA+TGG | 0.444945 | 1.4:-735129 | None:intergenic |
| ACCGCGTCTAATTCAACATC+TGG | 0.447105 | 1.4:-733426 | None:intergenic |
| ATGGTCTGACGATTTGTAGA+TGG | 0.454584 | 1.4:-733199 | None:intergenic |
| TGGTCTGACGATTTGTAGAT+GGG | 0.454893 | 1.4:-733198 | None:intergenic |
| CTTCGTGGGTGTCATGAAAC+GGG | 0.458795 | 1.4:+733869 | MS.gene64014:CDS |
| AAGAAGAACCATAAGATCAA+TGG | 0.462340 | 1.4:+732091 | MS.gene64014:CDS |
| TCTTCGTGGGTGTCATGAAA+CGG | 0.475577 | 1.4:+733868 | MS.gene64014:CDS |
| TTTACATCAGTCATGCGATT+CGG | 0.476699 | 1.4:+733804 | MS.gene64014:CDS |
| TATTCGTGCTTAACCGTCTC+AGG | 0.483843 | 1.4:-733223 | None:intergenic |
| TATGACACTGAACACAAATC+TGG | 0.493429 | 1.4:-733737 | None:intergenic |
| TGGAATAGAATCTCCAGAAA+AGG | 0.495274 | 1.4:+732111 | MS.gene64014:CDS |
| AGAACCAGAAACTCCTCTTT+GGG | 0.495390 | 1.4:-732285 | None:intergenic |
| AGAAATGACTATTCTGCAAT+GGG | 0.495928 | 1.4:+735002 | MS.gene64014:CDS |
| TCCAAGATTACTTCAATCGT+TGG | 0.497011 | 1.4:+735083 | MS.gene64014:CDS |
| CTTGCCCATTTATCTTGGAT+GGG | 0.500399 | 1.4:-735128 | None:intergenic |
| TAACAAAGTTCGAAGTAGGT+TGG | 0.511457 | 1.4:+734225 | MS.gene64014:CDS |
| TTGCCCATTTATCTTGGATG+GGG | 0.512234 | 1.4:-735127 | None:intergenic |
| AATCCTAATGAAAGTAAGAA+TGG | 0.512870 | 1.4:+733983 | MS.gene64014:CDS |
| AGCTGAGACTCTGTATGCAT+TGG | 0.533537 | 1.4:+732331 | MS.gene64014:CDS |
| AAGTTCCTTGATAATATGGT+TGG | 0.535952 | 1.4:-732378 | None:intergenic |
| ACAAATCTGGCCACAATGCA+TGG | 0.538047 | 1.4:-733724 | None:intergenic |
| AAGAAATGACTATTCTGCAA+TGG | 0.540060 | 1.4:+735001 | MS.gene64014:CDS |
| GTCAATAGCACAGCAGCAAA+GGG | 0.540185 | 1.4:+734282 | MS.gene64014:CDS |
| CTCTGAGTTATGTCTAGCAA+TGG | 0.542092 | 1.4:+733270 | MS.gene64014:CDS |
| TATCACAAAAGATGAGGAAG+AGG | 0.554801 | 1.4:+732307 | MS.gene64014:CDS |
| TGTTGTGAAAGTTGTTTACC+TGG | 0.557386 | 1.4:+733082 | MS.gene64014:CDS |
| AGTCAATAGCACAGCAGCAA+AGG | 0.559727 | 1.4:+734281 | MS.gene64014:CDS |
| CCAAAACAAAATGTTATCAA+AGG | 0.561969 | 1.4:+733839 | MS.gene64014:CDS |
| GTATGAGGAAAGATGATTTG+GGG | 0.565026 | 1.4:-735035 | None:intergenic |
| GCGTAACGACTTTGATGCAT+AGG | 0.566972 | 1.4:-734316 | None:intergenic |
| TGAGAGGGCAAAGTTATTGG+TGG | 0.568374 | 1.4:+733159 | MS.gene64014:CDS |
| TGCAACAAGCAGCTCAAGCT+AGG | 0.574393 | 1.4:+734925 | MS.gene64014:CDS |
| ATCAAAGGATCCAATCTTCG+TGG | 0.579130 | 1.4:+733854 | MS.gene64014:CDS |
| GTGCTTAACCGTCTCAGGCA+TGG | 0.580289 | 1.4:-733218 | None:intergenic |
| CTACAACAGTCAGATGATCA+AGG | 0.580745 | 1.4:-734351 | None:intergenic |
| CAGAATCCTAATTGGCAAAG+TGG | 0.584017 | 1.4:+734978 | MS.gene64014:CDS |
| TGGCTCCAACCATATTATCA+AGG | 0.585343 | 1.4:+732373 | MS.gene64014:CDS |
| TGCCCATTTATCTTGGATGG+GGG | 0.585433 | 1.4:-735126 | None:intergenic |
| AAGACTTTCGCCTTGAACCG+AGG | 0.587506 | 1.4:-733059 | None:intergenic |
| CCACTATGGTGAAATATCAC+AGG | 0.588135 | 1.4:+734024 | MS.gene64014:CDS |
| TCTGACTGTTGTAGGACCAC+AGG | 0.589844 | 1.4:+734360 | MS.gene64014:CDS |
| AAATATTTCTTGTGATGTAG+GGG | 0.592599 | 1.4:-735057 | None:intergenic |
| CATCAGAAGGCCATGCATTG+TGG | 0.596642 | 1.4:+733714 | MS.gene64014:intron |
| CTGTAAATTGCAATATTACG+TGG | 0.599616 | 1.4:+734952 | MS.gene64014:CDS |
| CACAAATTTCACAATGCGAG+AGG | 0.599720 | 1.4:+733400 | MS.gene64014:CDS |
| TATGAGGAAAGATGATTTGG+GGG | 0.607071 | 1.4:-735034 | None:intergenic |
| TCCATAACTTCCAGTTGACA+AGG | 0.614158 | 1.4:-734179 | None:intergenic |
| TGGTTCTATCACAAAAGATG+AGG | 0.614760 | 1.4:+732301 | MS.gene64014:CDS |
| TCGTCAGACCATGCCTGAGA+CGG | 0.623768 | 1.4:+733210 | MS.gene64014:CDS |
| TCAAAGGATCCAATCTTCGT+GGG | 0.626082 | 1.4:+733855 | MS.gene64014:CDS |
| GGCCAAAATTGGTCCCAAAG+AGG | 0.643574 | 1.4:+732272 | MS.gene64014:CDS |
| CCTGTGATATTTCACCATAG+TGG | 0.644154 | 1.4:-734024 | None:intergenic |
| ATGATCAAGGTAAACTGTCG+AGG | 0.644271 | 1.4:-734338 | None:intergenic |
| CTTCATGTCCTGCAAAACTG+AGG | 0.654726 | 1.4:-732426 | None:intergenic |
| GGTCTGACGATTTGTAGATG+GGG | 0.684514 | 1.4:-733197 | None:intergenic |
| CTGAGTTATGTCTAGCAATG+GGG | 0.684708 | 1.4:+733272 | MS.gene64014:CDS |
| GGTACATGCAAATTTGACGA+CGG | 0.685039 | 1.4:-734250 | None:intergenic |
| TAGTTACTTGTGATACTGTG+AGG | 0.687877 | 1.4:+733960 | MS.gene64014:CDS |
| GCAACAATGTTTCCTCACAG+TGG | 0.705825 | 1.4:+732353 | MS.gene64014:CDS |
| ATATGGTTGGAGCCACTGTG+AGG | 0.708280 | 1.4:-732365 | None:intergenic |
| ATTACAGCCATGAAGAAGCG+CGG | 0.721076 | 1.4:+732040 | None:intergenic |
| ACCAGATGTTGAATTAGACG+CGG | 0.733787 | 1.4:+733425 | MS.gene64014:CDS |
| AATTGGCTACCATAATAACG+AGG | 0.777976 | 1.4:-734840 | None:intergenic |
| ATGAGGAAAGATGATTTGGG+GGG | 0.787407 | 1.4:-735033 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATGTTATTAATTACAA+AGG | - | chr1.4:733344-733363 | None:intergenic | 15.0% |
| !! | TCTTATATAATATAGAAGAA+GGG | - | chr1.4:732487-732506 | None:intergenic | 15.0% |
| !!! | ATATTACATTTTATATACAG+GGG | - | chr1.4:732802-732821 | None:intergenic | 15.0% |
| !!! | ATTAATCTTTTTTTTTTGTC+AGG | - | chr1.4:732628-732647 | None:intergenic | 15.0% |
| !!! | GATATTACATTTTATATACA+GGG | - | chr1.4:732803-732822 | None:intergenic | 15.0% |
| !! | AAAATAAGAATTTACCACTT+AGG | - | chr1.4:733625-733644 | None:intergenic | 20.0% |
| !! | AAAGTATATAGATTTCAGAA+TGG | - | chr1.4:733318-733337 | None:intergenic | 20.0% |
| !! | ATGAATGAACAAGTAAAAAA+TGG | + | chr1.4:733574-733593 | MS.gene64014:CDS | 20.0% |
| !! | CATATATTTGTAATGATTCA+AGG | + | chr1.4:732856-732875 | MS.gene64014:intron | 20.0% |
| !! | CTCTTATATAATATAGAAGA+AGG | - | chr1.4:732488-732507 | None:intergenic | 20.0% |
| !! | TATTCCAGATTAAATATAAC+TGG | + | chr1.4:733372-733391 | MS.gene64014:intron | 20.0% |
| !!! | GGATATTACATTTTATATAC+AGG | - | chr1.4:732804-732823 | None:intergenic | 20.0% |
| !!! | TAAGATACTTTTGTAGTAAT+AGG | - | chr1.4:734768-734787 | None:intergenic | 20.0% |
| !!! | TATTTTGATCATAAAAACAC+AGG | + | chr1.4:733639-733658 | MS.gene64014:intron | 20.0% |
| !!! | TTTAAAAAGTTTTATGCTGA+TGG | - | chr1.4:732660-732679 | None:intergenic | 20.0% |
| ! | AAACTGAACAAACAAATTCT+AGG | + | chr1.4:734412-734431 | MS.gene64014:intron | 25.0% |
| ! | AAATATATGGCAAAAGAAAG+TGG | - | chr1.4:733036-733055 | None:intergenic | 25.0% |
| ! | AAATATTTCTTGTGATGTAG+GGG | - | chr1.4:735060-735079 | None:intergenic | 25.0% |
| ! | AACAAATTAATCAATACCTG+TGG | - | chr1.4:734379-734398 | None:intergenic | 25.0% |
| ! | AACTTGAACAGAATGATAAA+TGG | + | chr1.4:733935-733954 | MS.gene64014:CDS | 25.0% |
| ! | AATATATGGCAAAAGAAAGT+GGG | - | chr1.4:733035-733054 | None:intergenic | 25.0% |
| ! | AATCCTAATGAAAGTAAGAA+TGG | + | chr1.4:733983-734002 | MS.gene64014:CDS | 25.0% |
| ! | AATGCAAAATTCCAAGTTAA+AGG | - | chr1.4:732234-732253 | None:intergenic | 25.0% |
| ! | ATCAAGGGATATATTTATGA+GGG | - | chr1.4:734745-734764 | None:intergenic | 25.0% |
| ! | ATCTACCTTAAAAGTCATAA+GGG | - | chr1.4:732825-732844 | None:intergenic | 25.0% |
| ! | ATTATAACAAAGTTCGAAGT+AGG | + | chr1.4:734221-734240 | MS.gene64014:CDS | 25.0% |
| ! | ATTCTATTCCATTGATCTTA+TGG | - | chr1.4:732102-732121 | None:intergenic | 25.0% |
| ! | CAAATATTTCTTGTGATGTA+GGG | - | chr1.4:735061-735080 | None:intergenic | 25.0% |
| ! | CAATTATATGGAACTCAATA+TGG | + | chr1.4:734858-734877 | MS.gene64014:CDS | 25.0% |
| ! | CATAATAAGGATAGTTATCA+GGG | - | chr1.4:734140-734159 | None:intergenic | 25.0% |
| ! | CATATTGAGTTCCATATAAT+TGG | - | chr1.4:734860-734879 | None:intergenic | 25.0% |
| ! | CCAAAACAAAATGTTATCAA+AGG | + | chr1.4:733839-733858 | MS.gene64014:CDS | 25.0% |
| ! | GTATTGTAATAAGACATTTG+TGG | + | chr1.4:732158-732177 | MS.gene64014:intron | 25.0% |
| ! | TACTTAAAAGACAAAGCAAA+AGG | - | chr1.4:732198-732217 | None:intergenic | 25.0% |
| ! | TATCTACCTTAAAAGTCATA+AGG | - | chr1.4:732826-732845 | None:intergenic | 25.0% |
| ! | TATTATGGTAGCCAATTATA+TGG | + | chr1.4:734846-734865 | MS.gene64014:CDS | 25.0% |
| ! | TTGTCCAGTTATATTTAATC+TGG | - | chr1.4:733379-733398 | None:intergenic | 25.0% |
| !! | AATATCCCTTATGACTTTTA+AGG | + | chr1.4:732817-732836 | MS.gene64014:intron | 25.0% |
| !! | ACATTTTAAATGTAGAGAAG+TGG | - | chr1.4:732583-732602 | None:intergenic | 25.0% |
| !! | ATTTTGCATTTTGTAGAAAC+AGG | + | chr1.4:732244-732263 | MS.gene64014:intron | 25.0% |
| !! | ATTTTGTAGAAACAGGAAAT+TGG | + | chr1.4:732251-732270 | MS.gene64014:intron | 25.0% |
| !! | CATTTTAAATGTAGAGAAGT+GGG | - | chr1.4:732582-732601 | None:intergenic | 25.0% |
| !! | CTTTTCTTTATCATGTAAGA+TGG | - | chr1.4:732074-732093 | None:intergenic | 25.0% |
| !! | TTCTTTACATTATCCTTTTC+TGG | - | chr1.4:732127-732146 | None:intergenic | 25.0% |
| !! | TTTTGTAGTAATAGGATCAA+GGG | - | chr1.4:734760-734779 | None:intergenic | 25.0% |
| !!! | CCTTTGATAACATTTTGTTT+TGG | - | chr1.4:733842-733861 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCCACCTTTAACT+TGG | + | chr1.4:732220-732239 | MS.gene64014:intron | 25.0% |
| AAACAACAAATTGTCCTAAG+TGG | + | chr1.4:733608-733627 | MS.gene64014:intron | 30.0% | |
| AAGAAATGACTATTCTGCAA+TGG | + | chr1.4:735001-735020 | MS.gene64014:CDS | 30.0% | |
| AAGAAGAACCATAAGATCAA+TGG | + | chr1.4:732091-732110 | MS.gene64014:CDS | 30.0% | |
| AATGTTAATGCTTCTCTTGA+AGG | + | chr1.4:732452-732471 | MS.gene64014:CDS | 30.0% | |
| ACAATTTAATTGTGGAGAAG+TGG | + | chr1.4:732753-732772 | MS.gene64014:intron | 30.0% | |
| ACATTGCATAATATATGCAG+GGG | + | chr1.4:732552-732571 | MS.gene64014:intron | 30.0% | |
| ACTCTAACAACGAAATAACA+TGG | + | chr1.4:734703-734722 | MS.gene64014:intron | 30.0% | |
| AGAAATGACTATTCTGCAAT+GGG | + | chr1.4:735002-735021 | MS.gene64014:CDS | 30.0% | |
| AGACATTGCATAATATATGC+AGG | + | chr1.4:732550-732569 | MS.gene64014:intron | 30.0% | |
| AGGCTACTTGACAAAAAAAA+AGG | - | chr1.4:732717-732736 | None:intergenic | 30.0% | |
| ATGCCATTCTTACTTTCATT+AGG | - | chr1.4:733989-734008 | None:intergenic | 30.0% | |
| CATATTATCAAGGAACTTGA+TGG | + | chr1.4:732383-732402 | MS.gene64014:CDS | 30.0% | |
| CCAAATATTTCTTGTGATGT+AGG | - | chr1.4:735062-735081 | None:intergenic | 30.0% | |
| CCTACATCACAAGAAATATT+TGG | + | chr1.4:735059-735078 | MS.gene64014:CDS | 30.0% | |
| CTGTAAATTGCAATATTACG+TGG | + | chr1.4:734952-734971 | MS.gene64014:CDS | 30.0% | |
| GACATTGCATAATATATGCA+GGG | + | chr1.4:732551-732570 | MS.gene64014:intron | 30.0% | |
| GATCAAGGGATATATTTATG+AGG | - | chr1.4:734746-734765 | None:intergenic | 30.0% | |
| GATTGAAACTCTGCATAATA+AGG | - | chr1.4:734153-734172 | None:intergenic | 30.0% | |
| GCATAATAAGGATAGTTATC+AGG | - | chr1.4:734141-734160 | None:intergenic | 30.0% | |
| GGCTACTTGACAAAAAAAAA+GGG | - | chr1.4:732716-732735 | None:intergenic | 30.0% | |
| TAACTGATCACTATGAAATG+AGG | + | chr1.4:734642-734661 | MS.gene64014:intron | 30.0% | |
| TGCAGATAATTTAAGCATCA+TGG | - | chr1.4:734804-734823 | None:intergenic | 30.0% | |
| ! | AACTGGAAGTTATGGATTAA+AGG | + | chr1.4:734186-734205 | MS.gene64014:CDS | 30.0% |
| ! | AAGTTCCTTGATAATATGGT+TGG | - | chr1.4:732381-732400 | None:intergenic | 30.0% |
| ! | AGTAAGATCGAGGTTTATTT+TGG | + | chr1.4:734084-734103 | MS.gene64014:intron | 30.0% |
| ! | CATCAAGTTCCTTGATAATA+TGG | - | chr1.4:732385-732404 | None:intergenic | 30.0% |
| ! | CTTTTGTAGTAATAGGATCA+AGG | - | chr1.4:734761-734780 | None:intergenic | 30.0% |
| ! | TGTGCTATTGACTGAAAATA+AGG | - | chr1.4:734274-734293 | None:intergenic | 30.0% |
| !! | GCTATTAGTACTGATGTTAT+TGG | + | chr1.4:733494-733513 | MS.gene64014:intron | 30.0% |
| !! | TAGGACAATTTGTTGTTTGT+GGG | - | chr1.4:733606-733625 | None:intergenic | 30.0% |
| !! | TTAGGACAATTTGTTGTTTG+TGG | - | chr1.4:733607-733626 | None:intergenic | 30.0% |
| !! | TTGCTTGCTATCAAAATTTC+TGG | - | chr1.4:733542-733561 | None:intergenic | 30.0% |
| !!! | TTTGCCATATATTTTAGCCT+CGG | + | chr1.4:733042-733061 | MS.gene64014:intron | 30.0% |
| AACAGGAAATTGGCCAAAAT+TGG | + | chr1.4:732261-732280 | MS.gene64014:CDS | 35.0% | |
| AAGATCTTGCCCATTTATCT+TGG | - | chr1.4:735136-735155 | None:intergenic | 35.0% | |
| AATTGGCTACCATAATAACG+AGG | - | chr1.4:734843-734862 | None:intergenic | 35.0% | |
| ACTCTACTATGAGTCACTAT+GGG | + | chr1.4:734585-734604 | MS.gene64014:intron | 35.0% | |
| ACTTTGCCAATTAGGATTCT+GGG | - | chr1.4:734979-734998 | None:intergenic | 35.0% | |
| ATATCGCGAAAAAGTTGCAT+TGG | + | chr1.4:733243-733262 | MS.gene64014:CDS | 35.0% | |
| ATCAAAAGCAAGTAAGATCG+AGG | + | chr1.4:734074-734093 | MS.gene64014:intron | 35.0% | |
| GAACAGAGTATAGAAGAGTT+AGG | - | chr1.4:734439-734458 | None:intergenic | 35.0% | |
| GAGCTCACACAATTTAATTG+TGG | + | chr1.4:732745-732764 | MS.gene64014:intron | 35.0% | |
| GCAAAATTCCAAGTTAAAGG+TGG | - | chr1.4:732231-732250 | None:intergenic | 35.0% | |
| GGTATGAGGAAAGATGATTT+GGG | - | chr1.4:735039-735058 | None:intergenic | 35.0% | |
| GTATGAGGAAAGATGATTTG+GGG | - | chr1.4:735038-735057 | None:intergenic | 35.0% | |
| TAACAAAGTTCGAAGTAGGT+TGG | + | chr1.4:734225-734244 | MS.gene64014:CDS | 35.0% | |
| TACTCTACTATGAGTCACTA+TGG | + | chr1.4:734584-734603 | MS.gene64014:intron | 35.0% | |
| TAGTTACTTGTGATACTGTG+AGG | + | chr1.4:733960-733979 | MS.gene64014:CDS | 35.0% | |
| TATCACAAAAGATGAGGAAG+AGG | + | chr1.4:732307-732326 | MS.gene64014:CDS | 35.0% | |
| TATGACACTGAACACAAATC+TGG | - | chr1.4:733740-733759 | None:intergenic | 35.0% | |
| TCCAACGATTGAAGTAATCT+TGG | - | chr1.4:735087-735106 | None:intergenic | 35.0% | |
| TCCAAGATTACTTCAATCGT+TGG | + | chr1.4:735083-735102 | MS.gene64014:CDS | 35.0% | |
| TCTGAGTTATGTCTAGCAAT+GGG | + | chr1.4:733271-733290 | MS.gene64014:CDS | 35.0% | |
| TGAACCGAGGCTAAAATATA+TGG | - | chr1.4:733049-733068 | None:intergenic | 35.0% | |
| TGGAATAGAATCTCCAGAAA+AGG | + | chr1.4:732111-732130 | MS.gene64014:CDS | 35.0% | |
| TGTTGTGAAAGTTGTTTACC+TGG | + | chr1.4:733082-733101 | MS.gene64014:CDS | 35.0% | |
| TTAAATGTAGAGAAGTGGGT+CGG | - | chr1.4:732578-732597 | None:intergenic | 35.0% | |
| TTGCAACAACCTCGTTATTA+TGG | + | chr1.4:734831-734850 | MS.gene64014:CDS | 35.0% | |
| TTTACATCAGTCATGCGATT+CGG | + | chr1.4:733804-733823 | MS.gene64014:CDS | 35.0% | |
| TTTCTTCCACTTTGCCAATT+AGG | - | chr1.4:734987-735006 | None:intergenic | 35.0% | |
| ! | ATCAGTTAGAAAGAGAGCAT+AGG | - | chr1.4:734630-734649 | None:intergenic | 35.0% |
| ! | TACATTTTATATACAGGGGC+CGG | - | chr1.4:732798-732817 | None:intergenic | 35.0% |
| ! | TATGAGGAAAGATGATTTGG+GGG | - | chr1.4:735037-735056 | None:intergenic | 35.0% |
| ! | TGGTTCTATCACAAAAGATG+AGG | + | chr1.4:732301-732320 | MS.gene64014:CDS | 35.0% |
| !! | AACAAGAGCACCAAAAATTG+TGG | + | chr1.4:734898-734917 | MS.gene64014:CDS | 35.0% |
| !! | ACAAGAGCACCAAAAATTGT+GGG | + | chr1.4:734899-734918 | MS.gene64014:CDS | 35.0% |
| !! | ATCGAAGTATCGAGTTCTTT+CGG | + | chr1.4:733904-733923 | MS.gene64014:CDS | 35.0% |
| !! | ATTTTCAAGAACTCTCTGAG+AGG | + | chr1.4:733143-733162 | MS.gene64014:CDS | 35.0% |
| !! | CTTTCTGTTGTTTCATCAGA+AGG | + | chr1.4:733701-733720 | MS.gene64014:intron | 35.0% |
| !! | GTGATTTTTGAAGATTCTCC+AGG | - | chr1.4:733103-733122 | None:intergenic | 35.0% |
| !! | TTTTCAAGAACTCTCTGAGA+GGG | + | chr1.4:733144-733163 | MS.gene64014:CDS | 35.0% |
| !!! | TATATTTTAGCCTCGGTTCA+AGG | + | chr1.4:733049-733068 | MS.gene64014:intron | 35.0% |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | + | chr1.4:732719-732738 | MS.gene64014:intron | 35.0% |
| AATCTCTTGTCCTTGTCAAC+TGG | + | chr1.4:734169-734188 | MS.gene64014:CDS | 40.0% | |
| ACCAGATGTTGAATTAGACG+CGG | + | chr1.4:733425-733444 | MS.gene64014:CDS | 40.0% | |
| ACTTGATGGAGAACCTTTCT+TGG | + | chr1.4:732397-732416 | MS.gene64014:CDS | 40.0% | |
| AGAACCAGAAACTCCTCTTT+GGG | - | chr1.4:732288-732307 | None:intergenic | 40.0% | |
| AGAGCATAGGTGTATTCATG+TGG | - | chr1.4:734617-734636 | None:intergenic | 40.0% | |
| ATAGTTATCAGGGCGTGAAA+GGG | - | chr1.4:734130-734149 | None:intergenic | 40.0% | |
| ATCAAAGGATCCAATCTTCG+TGG | + | chr1.4:733854-733873 | MS.gene64014:CDS | 40.0% | |
| ATGATCAAGGTAAACTGTCG+AGG | - | chr1.4:734341-734360 | None:intergenic | 40.0% | |
| ATGGTCTGACGATTTGTAGA+TGG | - | chr1.4:733202-733221 | None:intergenic | 40.0% | |
| CACAAATTTCACAATGCGAG+AGG | + | chr1.4:733400-733419 | MS.gene64014:CDS | 40.0% | |
| CACTTTGCCAATTAGGATTC+TGG | - | chr1.4:734980-734999 | None:intergenic | 40.0% | |
| CAGAATCCTAATTGGCAAAG+TGG | + | chr1.4:734978-734997 | MS.gene64014:CDS | 40.0% | |
| CCACTATGGTGAAATATCAC+AGG | + | chr1.4:734024-734043 | MS.gene64014:CDS | 40.0% | |
| CCTGTGATATTTCACCATAG+TGG | - | chr1.4:734027-734046 | None:intergenic | 40.0% | |
| CGACTTTGATGCATAGGAAT+TGG | - | chr1.4:734313-734332 | None:intergenic | 40.0% | |
| CTACAACAGTCAGATGATCA+AGG | - | chr1.4:734354-734373 | None:intergenic | 40.0% | |
| CTCTGAGTTATGTCTAGCAA+TGG | + | chr1.4:733270-733289 | MS.gene64014:CDS | 40.0% | |
| CTGAGTTATGTCTAGCAATG+GGG | + | chr1.4:733272-733291 | MS.gene64014:CDS | 40.0% | |
| CTTGATCATCTGACTGTTGT+AGG | + | chr1.4:734352-734371 | MS.gene64014:CDS | 40.0% | |
| CTTGCCCATTTATCTTGGAT+GGG | - | chr1.4:735131-735150 | None:intergenic | 40.0% | |
| GAGCATAGGTGTATTCATGT+GGG | - | chr1.4:734616-734635 | None:intergenic | 40.0% | |
| GGGTATGAGGAAAGATGATT+TGG | - | chr1.4:735040-735059 | None:intergenic | 40.0% | |
| GGTACATGCAAATTTGACGA+CGG | - | chr1.4:734253-734272 | None:intergenic | 40.0% | |
| TAGAACCAGAAACTCCTCTT+TGG | - | chr1.4:732289-732308 | None:intergenic | 40.0% | |
| TCAAAGGATCCAATCTTCGT+GGG | + | chr1.4:733855-733874 | MS.gene64014:CDS | 40.0% | |
| TCCATAACTTCCAGTTGACA+AGG | - | chr1.4:734182-734201 | None:intergenic | 40.0% | |
| TCCTTGTCAACTGGAAGTTA+TGG | + | chr1.4:734178-734197 | MS.gene64014:CDS | 40.0% | |
| TCTTGCCCATTTATCTTGGA+TGG | - | chr1.4:735132-735151 | None:intergenic | 40.0% | |
| TGGCTCCAACCATATTATCA+AGG | + | chr1.4:732373-732392 | MS.gene64014:CDS | 40.0% | |
| TGGTCTGACGATTTGTAGAT+GGG | - | chr1.4:733201-733220 | None:intergenic | 40.0% | |
| TTCCCCCATCCAAGATAAAT+GGG | + | chr1.4:735124-735143 | MS.gene64014:CDS | 40.0% | |
| TTGCCCATTTATCTTGGATG+GGG | - | chr1.4:735130-735149 | None:intergenic | 40.0% | |
| TTTCCCCCATCCAAGATAAA+TGG | + | chr1.4:735123-735142 | MS.gene64014:CDS | 40.0% | |
| ! | ACATTTTATATACAGGGGCC+GGG | - | chr1.4:732797-732816 | None:intergenic | 40.0% |
| ! | ACTGAGGAGTTTTCCAAGAA+AGG | - | chr1.4:732413-732432 | None:intergenic | 40.0% |
| ! | ATGAGGAAAGATGATTTGGG+GGG | - | chr1.4:735036-735055 | None:intergenic | 40.0% |
| ! | GCTTCAACATCTGGAGTATA+TGG | + | chr1.4:734049-734068 | MS.gene64014:CDS | 40.0% |
| ! | GTTAGAGTGTTTGAGAAGCT+TGG | + | chr1.4:734485-734504 | MS.gene64014:intron | 40.0% |
| !! | AAGAGCACCAAAAATTGTGG+GGG | + | chr1.4:734901-734920 | MS.gene64014:CDS | 40.0% |
| !! | CAAGAGCACCAAAAATTGTG+GGG | + | chr1.4:734900-734919 | MS.gene64014:CDS | 40.0% |
| ACAAATCTGGCCACAATGCA+TGG | - | chr1.4:733727-733746 | None:intergenic | 45.0% | |
| ACCGCGTCTAATTCAACATC+TGG | - | chr1.4:733429-733448 | None:intergenic | 45.0% | |
| AGCTGAGACTCTGTATGCAT+TGG | + | chr1.4:732331-732350 | MS.gene64014:CDS | 45.0% | |
| AGTCAATAGCACAGCAGCAA+AGG | + | chr1.4:734281-734300 | MS.gene64014:CDS | 45.0% | |
| CTTCATGTCCTGCAAAACTG+AGG | - | chr1.4:732429-732448 | None:intergenic | 45.0% | |
| GATAGTTATCAGGGCGTGAA+AGG | - | chr1.4:734131-734150 | None:intergenic | 45.0% | |
| GATGTTGAATTAGACGCGGT+AGG | + | chr1.4:733429-733448 | MS.gene64014:intron | 45.0% | |
| GCAACAATGTTTCCTCACAG+TGG | + | chr1.4:732353-732372 | MS.gene64014:CDS | 45.0% | |
| GCGTAACGACTTTGATGCAT+AGG | - | chr1.4:734319-734338 | None:intergenic | 45.0% | |
| GGTCTGACGATTTGTAGATG+GGG | - | chr1.4:733200-733219 | None:intergenic | 45.0% | |
| GTACCATGCGTTCACATTTC+AGG | + | chr1.4:733516-733535 | MS.gene64014:intron | 45.0% | |
| GTCAATAGCACAGCAGCAAA+GGG | + | chr1.4:734282-734301 | MS.gene64014:CDS | 45.0% | |
| TAGTTATCAGGGCGTGAAAG+GGG | - | chr1.4:734129-734148 | None:intergenic | 45.0% | |
| TATTCGTGCTTAACCGTCTC+AGG | - | chr1.4:733226-733245 | None:intergenic | 45.0% | |
| TGAGAGGGCAAAGTTATTGG+TGG | + | chr1.4:733159-733178 | MS.gene64014:CDS | 45.0% | |
| TGCCAATTGAGCTAAGCTCA+CGG | - | chr1.4:732529-732548 | None:intergenic | 45.0% | |
| TGCCCATTTATCTTGGATGG+GGG | - | chr1.4:735129-735148 | None:intergenic | 45.0% | |
| TTCATGACACCCACGAAGAT+TGG | - | chr1.4:733867-733886 | None:intergenic | 45.0% | |
| ! | CATTTTATATACAGGGGCCG+GGG | - | chr1.4:732796-732815 | None:intergenic | 45.0% |
| ! | CTCAGTTTTGCAGGACATGA+AGG | + | chr1.4:732427-732446 | MS.gene64014:CDS | 45.0% |
| ! | CTCTGAGAGGGCAAAGTTAT+TGG | + | chr1.4:733156-733175 | MS.gene64014:CDS | 45.0% |
| ! | CTTTTGCAGCAATGCCACTA+TGG | + | chr1.4:734010-734029 | MS.gene64014:CDS | 45.0% |
| ! | GGAAAACTCCTCAGTTTTGC+AGG | + | chr1.4:732418-732437 | MS.gene64014:CDS | 45.0% |
| ! | GTTGCATCCCCCACAATTTT+TGG | - | chr1.4:734911-734930 | None:intergenic | 45.0% |
| ! | TCTTCGTGGGTGTCATGAAA+CGG | + | chr1.4:733868-733887 | MS.gene64014:CDS | 45.0% |
| ! | TCTTGTGATGTAGGGGTATG+AGG | - | chr1.4:735053-735072 | None:intergenic | 45.0% |
| !!! | CTCCTCTTTGGGACCAATTT+TGG | - | chr1.4:732277-732296 | None:intergenic | 45.0% |
| !!! | TTTTTTGTCAGGTAGCCCAG+TGG | - | chr1.4:732617-732636 | None:intergenic | 45.0% |
| AAGACTTTCGCCTTGAACCG+AGG | - | chr1.4:733062-733081 | None:intergenic | 50.0% | |
| ATATGGTTGGAGCCACTGTG+AGG | - | chr1.4:732368-732387 | None:intergenic | 50.0% | |
| CATCAGAAGGCCATGCATTG+TGG | + | chr1.4:733714-733733 | MS.gene64014:intron | 50.0% | |
| CCAATTGAGCTAAGCTCACG+GGG | - | chr1.4:732527-732546 | None:intergenic | 50.0% | |
| CGTGGACCCAGAATCCTAAT+TGG | + | chr1.4:734970-734989 | MS.gene64014:CDS | 50.0% | |
| GCCAATTGAGCTAAGCTCAC+GGG | - | chr1.4:732528-732547 | None:intergenic | 50.0% | |
| GGCCAAAATTGGTCCCAAAG+AGG | + | chr1.4:732272-732291 | MS.gene64014:CDS | 50.0% | |
| TCACAGGCTGCTTCAACATC+TGG | + | chr1.4:734040-734059 | MS.gene64014:CDS | 50.0% | |
| TCTGACTGTTGTAGGACCAC+AGG | + | chr1.4:734360-734379 | MS.gene64014:CDS | 50.0% | |
| TGCAACAAGCAGCTCAAGCT+AGG | + | chr1.4:734925-734944 | MS.gene64014:CDS | 50.0% | |
| TGGCCTGAAATGTGAACGCA+TGG | - | chr1.4:733522-733541 | None:intergenic | 50.0% | |
| TGGTCCCAAAGAGGAGTTTC+TGG | + | chr1.4:732281-732300 | MS.gene64014:CDS | 50.0% | |
| ! | AAGATGATTTGGGGGGCACA+TGG | - | chr1.4:735029-735048 | None:intergenic | 50.0% |
| ! | CTTCGTGGGTGTCATGAAAC+GGG | + | chr1.4:733869-733888 | MS.gene64014:CDS | 50.0% |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | - | chr1.4:732737-732756 | None:intergenic | 50.0% |
| AATGTGTGAGCTCCAGCCAC+TGG | + | chr1.4:732598-732617 | MS.gene64014:intron | 55.0% | |
| AGGGCGTGAAAGGGGATAAG+GGG | - | chr1.4:734121-734140 | None:intergenic | 55.0% | |
| ATGTGTGAGCTCCAGCCACT+GGG | + | chr1.4:732599-732618 | MS.gene64014:intron | 55.0% | |
| CAGGGCGTGAAAGGGGATAA+GGG | - | chr1.4:734122-734141 | None:intergenic | 55.0% | |
| CCCCGTGAGCTTAGCTCAAT+TGG | + | chr1.4:732524-732543 | MS.gene64014:intron | 55.0% | |
| GTGCTTAACCGTCTCAGGCA+TGG | - | chr1.4:733221-733240 | None:intergenic | 55.0% | |
| TCAGGGCGTGAAAGGGGATA+AGG | - | chr1.4:734123-734142 | None:intergenic | 55.0% | |
| TCGTCAGACCATGCCTGAGA+CGG | + | chr1.4:733210-733229 | MS.gene64014:CDS | 55.0% | |
| AGTGTCCGAGGTTCGAACCC+CGG | + | chr1.4:732776-732795 | MS.gene64014:intron | 60.0% | |
| TTGTCAGGTAGCCCAGTGGC+TGG | - | chr1.4:732613-732632 | None:intergenic | 60.0% | |
| ! | GTGGAGAAGTGGAGTGTCCG+AGG | + | chr1.4:732764-732783 | MS.gene64014:intron | 60.0% |
| AGGGGCCGGGGTTCGAACCT+CGG | - | chr1.4:732784-732803 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 732049 | 735175 | 732049 | ID=MS.gene64014 |
| chr1.4 | mRNA | 732049 | 735175 | 732049 | ID=MS.gene64014.t1;Parent=MS.gene64014 |
| chr1.4 | exon | 732049 | 732153 | 732049 | ID=MS.gene64014.t1.exon1;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 732049 | 732153 | 732049 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| chr1.4 | exon | 732260 | 732473 | 732260 | ID=MS.gene64014.t1.exon2;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 732260 | 732473 | 732260 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| chr1.4 | exon | 733059 | 733293 | 733059 | ID=MS.gene64014.t1.exon3;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 733059 | 733293 | 733059 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| chr1.4 | exon | 733380 | 733446 | 733380 | ID=MS.gene64014.t1.exon4;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 733380 | 733446 | 733380 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| chr1.4 | exon | 733538 | 733595 | 733538 | ID=MS.gene64014.t1.exon5;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 733538 | 733595 | 733538 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| chr1.4 | exon | 733720 | 734084 | 733720 | ID=MS.gene64014.t1.exon6;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 733720 | 734084 | 733720 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| chr1.4 | exon | 734163 | 734381 | 734163 | ID=MS.gene64014.t1.exon7;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 734163 | 734381 | 734163 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| chr1.4 | exon | 734825 | 735175 | 734825 | ID=MS.gene64014.t1.exon8;Parent=MS.gene64014.t1 |
| chr1.4 | CDS | 734825 | 735175 | 734825 | ID=cds.MS.gene64014.t1;Parent=MS.gene64014.t1 |
| Gene Sequence |
| Protein sequence |
