AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053557


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053557.t1 MTR_4g094100 90.349 373 31 2 8 375 24 396 0.0 668
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053557.t1 AT1G60600 66.984 315 102 2 53 366 69 382 4.16e-143 411
MS.gene053557.t1 AT1G60600 68.750 288 89 1 79 366 1 287 2.99e-135 387

Find 76 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTGCTGCACTGGCTTT+TGG 0.190762 4.4:+21172963 MS.gene053557:CDS
ACCATTTCGGTTGAGCTATC+AGG 0.266778 4.4:+21172045 MS.gene053557:CDS
TGCCTTGCTCTCGGCTTCAT+TGG 0.290145 4.4:+21171841 MS.gene053557:CDS
TCGGCTTCATTGGGCTGACT+TGG 0.299809 4.4:+21171851 MS.gene053557:CDS
TGCTTTGTTTGGTGCTGCAC+TGG 0.320529 4.4:+21172956 MS.gene053557:CDS
CTTGTCGCTCTATGCTCTTT+TGG 0.331194 4.4:+21172578 MS.gene053557:CDS
TTTCAATGGAAACATTGATT+TGG 0.343203 4.4:+21170649 MS.gene053557:CDS
TGCTGTAGTGTCCACCATTT+CGG 0.343848 4.4:+21172032 MS.gene053557:intron
CTCACTTGTGCAATTATTTG+CGG 0.348757 4.4:+21171913 MS.gene053557:CDS
TATTTGCGGCTATATATATC+AGG 0.358239 4.4:+21171927 MS.gene053557:CDS
GCCTTGCTCTCGGCTTCATT+GGG 0.359448 4.4:+21171842 MS.gene053557:CDS
CAGTTGTAAACTTGGTTAGA+AGG 0.369813 4.4:+21171673 MS.gene053557:CDS
CTTCAGTTCTTGTTATTACC+TGG 0.372213 4.4:+21171501 MS.gene053557:CDS
TGGATTGGTATTGGCTAGAA+TGG 0.395431 4.4:+21172983 MS.gene053557:CDS
AGTTGGAAAATTATCGCCTT+TGG 0.398616 4.4:+21172417 MS.gene053557:CDS
CTGTTCCACTCACGGGGAAA+TGG 0.399263 4.4:-21172235 None:intergenic
ACCAACGCAACAGAATAAAT+AGG 0.402555 4.4:-21170687 None:intergenic
TGGAGTTGACAAGAACAAAA+AGG 0.403308 4.4:+21171647 MS.gene053557:CDS
CACTTGCCTTGTGATTGTCT+TGG 0.405318 4.4:-21172805 None:intergenic
GTGAGGTTGCATGCTTTGTT+TGG 0.412359 4.4:+21172945 MS.gene053557:CDS
TTTGAACATGAAATCTCCTA+TGG 0.425313 4.4:-21170533 None:intergenic
AGTTCTAGCTTTGAAGATGT+TGG 0.441931 4.4:+21170606 MS.gene053557:CDS
TTGAATTTGGAAAGCCGTAC+AGG 0.451252 4.4:+21171796 MS.gene053557:intron
AATTCAAGATGATATTTCAA+TGG 0.453590 4.4:+21170635 MS.gene053557:CDS
CGGCTTCATTGGGCTGACTT+GGG 0.456704 4.4:+21171852 MS.gene053557:CDS
AGGCATCATGTGCGTTGTGC+AGG 0.456822 4.4:+21170558 MS.gene053557:CDS
CCCTGATAGCTCAACCGAAA+TGG 0.458150 4.4:-21172046 None:intergenic
GCTGACTTGGGCCGCTATTG+AGG 0.460129 4.4:+21171864 MS.gene053557:CDS
CAATGGAAACATTGATTTGG+AGG 0.468559 4.4:+21170652 MS.gene053557:CDS
CAACCTCACACAAAAGTACT+TGG 0.469806 4.4:-21172931 None:intergenic
TCGGTTGAGCTATCAGGGAC+TGG 0.476574 4.4:+21172051 MS.gene053557:CDS
GGAGATTTCATGTTCAAAGA+AGG 0.477839 4.4:+21170538 MS.gene053557:CDS
GCTTACTTATGCCTTGCTCT+CGG 0.479671 4.4:+21171832 MS.gene053557:CDS
AAAGGAATCAGTTGTAAACT+TGG 0.488225 4.4:+21171665 MS.gene053557:CDS
CGGTTGAGCTATCAGGGACT+GGG 0.491309 4.4:+21172052 MS.gene053557:CDS
GCCTATTTATTCTGTTGCGT+TGG 0.500445 4.4:+21170686 MS.gene053557:CDS
CTTTCAGCATCAATCCTCGT+TGG 0.502661 4.4:+21172260 MS.gene053557:CDS
CCATTTCGGTTGAGCTATCA+GGG 0.502786 4.4:+21172046 MS.gene053557:CDS
CATCATGTGCGTTGTGCAGG+AGG 0.507154 4.4:+21170561 MS.gene053557:CDS
ATCATGTGCGTTGTGCAGGA+GGG 0.514543 4.4:+21170562 MS.gene053557:CDS
ACTTGGGCCGCTATTGAGGC+AGG 0.514777 4.4:+21171868 MS.gene053557:CDS
GAAAGAACTGTTCCACTCAC+GGG 0.515944 4.4:-21172242 None:intergenic
CTTGGACAAATTTAACTACC+AGG 0.518543 4.4:-21172787 None:intergenic
GTTAGACTTGGCACTGAAAG+AGG 0.521855 4.4:+21172531 MS.gene053557:CDS
GTGGATGGAGACGAAGAAGT+TGG 0.522845 4.4:+21172400 MS.gene053557:CDS
AATGGAAACATTGATTTGGA+GGG 0.525358 4.4:+21170653 MS.gene053557:CDS
GTTGAGATGCTCACAGTAAG+AGG 0.527629 4.4:-21170711 None:intergenic
ATAGCATTTAGCTGAGAAGA+TGG 0.528197 4.4:-21171462 None:intergenic
TTATTACCTGGCTCAACTTG+AGG 0.528630 4.4:+21171513 MS.gene053557:CDS
GACATTACCGATCGGAAACC+TGG 0.531684 4.4:+21172769 MS.gene053557:CDS
AATTTACCTCAAGTTGAGCC+AGG 0.543221 4.4:-21171519 None:intergenic
AAAGCTAGAACTAGAAGAAG+AGG 0.544904 4.4:-21170595 None:intergenic
TTTAAAATGTAGTAGTGGTG+TGG 0.551322 4.4:+21170500 MS.gene053557:CDS
TCATGTGCGTTGTGCAGGAG+GGG 0.559520 4.4:+21170563 MS.gene053557:CDS
TGAAAGAACTGTTCCACTCA+CGG 0.567193 4.4:-21172243 None:intergenic
ATTTAGTACAAGGCAGTGCA+AGG 0.570222 4.4:+21172125 MS.gene053557:CDS
GCCCAATGAAGCCGAGAGCA+AGG 0.576647 4.4:-21171843 None:intergenic
CAAAGTTTAAAATGTAGTAG+TGG 0.581510 4.4:+21170495 MS.gene053557:CDS
TTGTCCATAACACAGGTGGA+TGG 0.584733 4.4:+21172385 MS.gene053557:intron
ACGAACCATTTCCCCGTGAG+TGG 0.586635 4.4:+21172230 MS.gene053557:CDS
TGATAGCTCAACCGAAATGG+TGG 0.602707 4.4:-21172043 None:intergenic
TTAACTACCAGGTTTCCGAT+CGG 0.615133 4.4:-21172776 None:intergenic
TTGAGATGCTCACAGTAAGA+GGG 0.622428 4.4:-21170710 None:intergenic
AAGCTAGAACTAGAAGAAGA+GGG 0.625101 4.4:-21170594 None:intergenic
ATAAATATAACATGTCATGT+TGG 0.628100 4.4:+21170445 None:intergenic
TGTGCATTGACATTACCGAT+CGG 0.633142 4.4:+21172761 MS.gene053557:CDS
CAGGTTTCCTGCCTCAATAG+CGG 0.635356 4.4:-21171875 None:intergenic
TGGCACTGAAAGAGGTGCAG+AGG 0.639466 4.4:+21172539 MS.gene053557:CDS
CAACAACAAAGATTCCTGTA+CGG 0.642984 4.4:-21171810 None:intergenic
AAAGAACTGTTCCACTCACG+GGG 0.644363 4.4:-21172241 None:intergenic
GCACTCACAATACAAGTGAG+AGG 0.647555 4.4:-21172627 None:intergenic
ATTTGTCCAAGACAATCACA+AGG 0.685959 4.4:+21172799 MS.gene053557:CDS
TCGGTAATGTCAATGCACAA+AGG 0.686638 4.4:-21172757 None:intergenic
TGAGAAACAATACTGAACGC+AGG 0.690292 4.4:-21171894 None:intergenic
GAGATGTTGTGAAGCCAACG+AGG 0.738146 4.4:-21172274 None:intergenic
CCAAATGCTGCAAAACACAG+AGG 0.746304 4.4:-21172079 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATAATATTTACTATTCA+TGG + chr4.4:21172172-21172191 MS.gene053557:intron 15.0%
!! TAATTGGAACTAAAAAATAA+CGG - chr4.4:21172332-21172351 None:intergenic 15.0%
!!! GTTCTTTTTATATTAAAACT+AGG + chr4.4:21172872-21172891 MS.gene053557:intron 15.0%
!!! TAAATGCTATTTTGTTTTAT+TGG + chr4.4:21171475-21171494 MS.gene053557:CDS 15.0%
!!! TTATTTCTTATTTTTCTTTC+AGG + chr4.4:21172509-21172528 MS.gene053557:intron 15.0%
!! AATATTATAACTCTGTAGTT+AGG - chr4.4:21172163-21172182 None:intergenic 20.0%
!! AATTCAAGATGATATTTCAA+TGG + chr4.4:21170635-21170654 MS.gene053557:CDS 20.0%
!! TTAATTGTTAAATTCAGCAT+AGG + chr4.4:21170750-21170769 MS.gene053557:intron 20.0%
!! TTTAACATTAAGATAGGAAA+AGG - chr4.4:21171248-21171267 None:intergenic 20.0%
!!! AATGTATTGGTATAACAAAT+AGG + chr4.4:21171409-21171428 MS.gene053557:intron 20.0%
!!! ACTACTACATTTTAAACTTT+GGG - chr4.4:21170496-21170515 None:intergenic 20.0%
!!! ATACTGATAGTTTTAAATTG+CGG - chr4.4:21170965-21170984 None:intergenic 20.0%
!!! TAATCTTTTGGTTATGAATA+TGG + chr4.4:21172723-21172742 MS.gene053557:intron 20.0%
! AACGAGTTTAACATTAAGAT+AGG - chr4.4:21171254-21171273 None:intergenic 25.0%
! AAGATTAAATCATAAGTGCA+TGG - chr4.4:21172710-21172729 None:intergenic 25.0%
! ATACCCTATTTGAATGAAAT+TGG + chr4.4:21171040-21171059 MS.gene053557:intron 25.0%
! CCTATCATGCAATAAAAAAT+TGG - chr4.4:21171307-21171326 None:intergenic 25.0%
! GTGTTATGGACAAAATAAAA+AGG - chr4.4:21172378-21172397 None:intergenic 25.0%
! TACCCTATTTGAATGAAATT+GGG + chr4.4:21171041-21171060 MS.gene053557:intron 25.0%
! TACTAAATAAAAAGCAGTAG+TGG - chr4.4:21172113-21172132 None:intergenic 25.0%
! TAGACTCTCTCATAAATATA+GGG - chr4.4:21171389-21171408 None:intergenic 25.0%
! TATTGGTATAACAAATAGGT+AGG + chr4.4:21171413-21171432 MS.gene053557:intron 25.0%
! TTAGACTCTCTCATAAATAT+AGG - chr4.4:21171390-21171409 None:intergenic 25.0%
! TTTATTGACATGTAGATGTA+GGG + chr4.4:21171079-21171098 MS.gene053557:intron 25.0%
!! AGTTTGAAACCTTTATATTG+TGG + chr4.4:21170912-21170931 MS.gene053557:intron 25.0%
!! CAAAGTTTAAAATGTAGTAG+TGG + chr4.4:21170495-21170514 MS.gene053557:CDS 25.0%
!! CACTACTACATTTTAAACTT+TGG - chr4.4:21170497-21170516 None:intergenic 25.0%
!! GCACTTATGATTTAATCTTT+TGG + chr4.4:21172711-21172730 MS.gene053557:intron 25.0%
!! TTTCAATGGAAACATTGATT+TGG + chr4.4:21170649-21170668 MS.gene053557:CDS 25.0%
!! TTTTATTGACATGTAGATGT+AGG + chr4.4:21171078-21171097 MS.gene053557:intron 25.0%
!!! ACTGCTTTTTATTTAGTACA+AGG + chr4.4:21172115-21172134 MS.gene053557:CDS 25.0%
!!! CCAATTTTTTATTGCATGAT+AGG + chr4.4:21171304-21171323 MS.gene053557:intron 25.0%
!!! TGTTTTCATTTTGGAATCAA+TGG + chr4.4:21171567-21171586 MS.gene053557:intron 25.0%
!!! TTTTATTTTGTCCATAACAC+AGG + chr4.4:21172378-21172397 MS.gene053557:intron 25.0%
AAAGGAATCAGTTGTAAACT+TGG + chr4.4:21171665-21171684 MS.gene053557:CDS 30.0%
AAAGGTGGGATAAATAATTG+AGG - chr4.4:21171230-21171249 None:intergenic 30.0%
AACAAGATTATGATATCAGC+AGG - chr4.4:21171961-21171980 None:intergenic 30.0%
AACATTAAGATAGGAAAAGG+TGG - chr4.4:21171245-21171264 None:intergenic 30.0%
ACATTAAGATAGGAAAAGGT+GGG - chr4.4:21171244-21171263 None:intergenic 30.0%
ACCCTATTTGAATGAAATTG+GGG + chr4.4:21171042-21171061 MS.gene053557:intron 30.0%
AGAAAAGTTATGTAGAAGGA+AGG + chr4.4:21171163-21171182 MS.gene053557:intron 30.0%
ATGAGAGAGTCTAAATGTAT+TGG + chr4.4:21171396-21171415 MS.gene053557:intron 30.0%
CAAAAACAAAACTGTAAGAC+TGG - chr4.4:21171355-21171374 None:intergenic 30.0%
TATTTGCGGCTATATATATC+AGG + chr4.4:21171927-21171946 MS.gene053557:CDS 30.0%
TCACATTTCTAAGTTTGAGT+TGG - chr4.4:21171003-21171022 None:intergenic 30.0%
TTATTGACATGTAGATGTAG+GGG + chr4.4:21171080-21171099 MS.gene053557:intron 30.0%
TTTGAACATGAAATCTCCTA+TGG - chr4.4:21170536-21170555 None:intergenic 30.0%
! AAGGAAGGAACTGTATTTTA+AGG + chr4.4:21171178-21171197 MS.gene053557:intron 30.0%
! GCTAGCTATTGTTTTCATTT+TGG + chr4.4:21171558-21171577 MS.gene053557:intron 30.0%
! GGACAAAGATAAGATTTTCA+TGG + chr4.4:21172908-21172927 MS.gene053557:intron 30.0%
! TCCTTCTACATAACTTTTCT+TGG - chr4.4:21171163-21171182 None:intergenic 30.0%
! TTTAAAATGTAGTAGTGGTG+TGG + chr4.4:21170500-21170519 MS.gene053557:CDS 30.0%
! TTTTCATTACCTTCGGATTA+AGG + chr4.4:21171137-21171156 MS.gene053557:intron 30.0%
!! AATGGAAACATTGATTTGGA+GGG + chr4.4:21170653-21170672 MS.gene053557:CDS 30.0%
!! TGTCATGTTGGTTAATTTTC+AGG + chr4.4:21170457-21170476 MS.gene053557:CDS 30.0%
!!! TTTTTCTTTCAGGTTAGACT+TGG + chr4.4:21172519-21172538 MS.gene053557:intron 30.0%
AAAGCTAGAACTAGAAGAAG+AGG - chr4.4:21170598-21170617 None:intergenic 35.0%
AAGCTAGAACTAGAAGAAGA+GGG - chr4.4:21170597-21170616 None:intergenic 35.0%
AATGTTAAACTCGTTGCCAT+AGG + chr4.4:21171259-21171278 MS.gene053557:intron 35.0%
ACCAACGCAACAGAATAAAT+AGG - chr4.4:21170690-21170709 None:intergenic 35.0%
ACCCCCAATTTCATTCAAAT+AGG - chr4.4:21171047-21171066 None:intergenic 35.0%
AGTTGGAAAATTATCGCCTT+TGG + chr4.4:21172417-21172436 MS.gene053557:CDS 35.0%
ATAGCATTTAGCTGAGAAGA+TGG - chr4.4:21171465-21171484 None:intergenic 35.0%
ATTTGTCCAAGACAATCACA+AGG + chr4.4:21172799-21172818 MS.gene053557:CDS 35.0%
CAACAACAAAGATTCCTGTA+CGG - chr4.4:21171813-21171832 None:intergenic 35.0%
CAGTTGTAAACTTGGTTAGA+AGG + chr4.4:21171673-21171692 MS.gene053557:CDS 35.0%
CCCCCAATTTCATTCAAATA+GGG - chr4.4:21171046-21171065 None:intergenic 35.0%
CCCTATTTGAATGAAATTGG+GGG + chr4.4:21171043-21171062 MS.gene053557:intron 35.0%
CTAGTTCATGTACATACCTA+TGG - chr4.4:21171278-21171297 None:intergenic 35.0%
CTCACTTGTGCAATTATTTG+CGG + chr4.4:21171913-21171932 MS.gene053557:CDS 35.0%
CTTGGACAAATTTAACTACC+AGG - chr4.4:21172790-21172809 None:intergenic 35.0%
GATGAAAGTGACTGCAAAAA+AGG - chr4.4:21172304-21172323 None:intergenic 35.0%
GCCAAGAAAAGTTATGTAGA+AGG + chr4.4:21171159-21171178 MS.gene053557:intron 35.0%
GGAGATTTCATGTTCAAAGA+AGG + chr4.4:21170538-21170557 MS.gene053557:CDS 35.0%
TAAAAAGCAGTAGTGGCAAA+AGG - chr4.4:21172106-21172125 None:intergenic 35.0%
TAAAAAGGTCACCAACTTGA+AGG - chr4.4:21172363-21172382 None:intergenic 35.0%
TAGCAAAGTGTATCTACCAA+AGG - chr4.4:21172436-21172455 None:intergenic 35.0%
TCTGCAGTTTCATATGGTTA+TGG + chr4.4:21171597-21171616 MS.gene053557:intron 35.0%
TGGAGTTGACAAGAACAAAA+AGG + chr4.4:21171647-21171666 MS.gene053557:CDS 35.0%
TTTCTTCCTCGTGTTGAATT+TGG + chr4.4:21171783-21171802 MS.gene053557:intron 35.0%
! CCTGAACTTTTCATTACCTT+CGG + chr4.4:21171130-21171149 MS.gene053557:intron 35.0%
! TATTTTGTCCATAACACAGG+TGG + chr4.4:21172381-21172400 MS.gene053557:intron 35.0%
!! AGTTCTAGCTTTGAAGATGT+TGG + chr4.4:21170606-21170625 MS.gene053557:CDS 35.0%
!! CAATGGAAACATTGATTTGG+AGG + chr4.4:21170652-21170671 MS.gene053557:CDS 35.0%
!! CTTCAGTTCTTGTTATTACC+TGG + chr4.4:21171501-21171520 MS.gene053557:CDS 35.0%
!! CTTGAAGGTACTCTTGTAAT+TGG - chr4.4:21172348-21172367 None:intergenic 35.0%
!! GACGTTTATGATTTTGACAC+TGG + chr4.4:21171627-21171646 MS.gene053557:CDS 35.0%
!! TATGCTCTTTTGGTTGCTTT+TGG + chr4.4:21172588-21172607 MS.gene053557:CDS 35.0%
!! TTACAAGAGTACCTTCAAGT+TGG + chr4.4:21172349-21172368 MS.gene053557:intron 35.0%
!! TTTTTGCAGTCACTTTCATC+AGG + chr4.4:21172304-21172323 MS.gene053557:CDS 35.0%
AGCAACTCTGCAGTTTCATA+TGG + chr4.4:21171591-21171610 MS.gene053557:intron 40.0%
ATTTAGTACAAGGCAGTGCA+AGG + chr4.4:21172125-21172144 MS.gene053557:CDS 40.0%
CCGAAGGTAATGAAAAGTTC+AGG - chr4.4:21171133-21171152 None:intergenic 40.0%
GCCTATTTATTCTGTTGCGT+TGG + chr4.4:21170686-21170705 MS.gene053557:CDS 40.0%
GTGTGGAAAAAGTCTTCCAT+AGG + chr4.4:21170517-21170536 MS.gene053557:CDS 40.0%
TCGGTAATGTCAATGCACAA+AGG - chr4.4:21172760-21172779 None:intergenic 40.0%
TGAAAGAACTGTTCCACTCA+CGG - chr4.4:21172246-21172265 None:intergenic 40.0%
TGAGAAACAATACTGAACGC+AGG - chr4.4:21171897-21171916 None:intergenic 40.0%
TGCAGCTGTAATTACAGTTC+TGG + chr4.4:21170886-21170905 MS.gene053557:intron 40.0%
TTAACTACCAGGTTTCCGAT+CGG - chr4.4:21172779-21172798 None:intergenic 40.0%
TTATTACCTGGCTCAACTTG+AGG + chr4.4:21171513-21171532 MS.gene053557:CDS 40.0%
TTGAATTTGGAAAGCCGTAC+AGG + chr4.4:21171796-21171815 MS.gene053557:intron 40.0%
TTGAGATGCTCACAGTAAGA+GGG - chr4.4:21170713-21170732 None:intergenic 40.0%
TTGATCCTTATCTCATACCC+AGG - chr4.4:21170787-21170806 None:intergenic 40.0%
! AAACTAGGTTGTGTTGTTGC+AGG + chr4.4:21172887-21172906 MS.gene053557:intron 40.0%
! TCGCGAGTATAGTTGCTATT+TGG + chr4.4:21172683-21172702 MS.gene053557:intron 40.0%
! TGTGCATTGACATTACCGAT+CGG + chr4.4:21172761-21172780 MS.gene053557:CDS 40.0%
!! AATTTACCTCAAGTTGAGCC+AGG - chr4.4:21171522-21171541 None:intergenic 40.0%
!! CAACCTCACACAAAAGTACT+TGG - chr4.4:21172934-21172953 None:intergenic 40.0%
!! TGGATTGGTATTGGCTAGAA+TGG + chr4.4:21172983-21173002 MS.gene053557:CDS 40.0%
!!! ACTGGCTTTTGGATTGGTAT+TGG + chr4.4:21172974-21172993 MS.gene053557:CDS 40.0%
!!! TTTTCTTGGCCTTAATCCGA+AGG - chr4.4:21171149-21171168 None:intergenic 40.0%
AAAGAACTGTTCCACTCACG+GGG - chr4.4:21172244-21172263 None:intergenic 45.0%
ACCATTTCGGTTGAGCTATC+AGG + chr4.4:21172045-21172064 MS.gene053557:CDS 45.0%
ATGAAATTGGGGGTCAGAGT+AGG + chr4.4:21171053-21171072 MS.gene053557:intron 45.0%
CACTTGCCTTGTGATTGTCT+TGG - chr4.4:21172808-21172827 None:intergenic 45.0%
CATAGGTTCATGTGATGCCT+GGG + chr4.4:21170767-21170786 MS.gene053557:intron 45.0%
CCAAATGCTGCAAAACACAG+AGG - chr4.4:21172082-21172101 None:intergenic 45.0%
CCATTTCGGTTGAGCTATCA+GGG + chr4.4:21172046-21172065 MS.gene053557:CDS 45.0%
CTTTCAGCATCAATCCTCGT+TGG + chr4.4:21172260-21172279 MS.gene053557:CDS 45.0%
GAAAGAACTGTTCCACTCAC+GGG - chr4.4:21172245-21172264 None:intergenic 45.0%
GACATGTAGATGTAGGGGAT+AGG + chr4.4:21171085-21171104 MS.gene053557:intron 45.0%
GCAACTATACTCGCGAAGAA+AGG - chr4.4:21172679-21172698 None:intergenic 45.0%
GCACTCACAATACAAGTGAG+AGG - chr4.4:21172630-21172649 None:intergenic 45.0%
GCTTACTTATGCCTTGCTCT+CGG + chr4.4:21171832-21171851 MS.gene053557:CDS 45.0%
GGCTTGGAGCCACAATATAA+AGG - chr4.4:21170924-21170943 None:intergenic 45.0%
GGCTTTCCAAATTCAACACG+AGG - chr4.4:21171792-21171811 None:intergenic 45.0%
GTTGAGATGCTCACAGTAAG+AGG - chr4.4:21170714-21170733 None:intergenic 45.0%
TGATAGCTCAACCGAAATGG+TGG - chr4.4:21172046-21172065 None:intergenic 45.0%
TGATGCCTGGGTATGAGATA+AGG + chr4.4:21170779-21170798 MS.gene053557:intron 45.0%
TGCTGTAGTGTCCACCATTT+CGG + chr4.4:21172032-21172051 MS.gene053557:intron 45.0%
TTAAACCGCACTTGAAGGCT+TGG - chr4.4:21170940-21170959 None:intergenic 45.0%
TTGTCCATAACACAGGTGGA+TGG + chr4.4:21172385-21172404 MS.gene053557:intron 45.0%
! CCTCTGTGTTTTGCAGCATT+TGG + chr4.4:21172079-21172098 MS.gene053557:CDS 45.0%
! CTTGTCGCTCTATGCTCTTT+TGG + chr4.4:21172578-21172597 MS.gene053557:CDS 45.0%
! GTGAGGTTGCATGCTTTGTT+TGG + chr4.4:21172945-21172964 MS.gene053557:CDS 45.0%
! GTTAGACTTGGCACTGAAAG+AGG + chr4.4:21172531-21172550 MS.gene053557:CDS 45.0%
! TGGCCAAGTACTTTTGTGTG+AGG + chr4.4:21172928-21172947 MS.gene053557:CDS 45.0%
!!! GGTTGCTTTTGGTCTAAGCA+AGG + chr4.4:21172599-21172618 MS.gene053557:CDS 45.0%
ATCATGTGCGTTGTGCAGGA+GGG + chr4.4:21170562-21170581 MS.gene053557:CDS 50.0%
CAGGTTTCCTGCCTCAATAG+CGG - chr4.4:21171878-21171897 None:intergenic 50.0%
CCCTGATAGCTCAACCGAAA+TGG - chr4.4:21172049-21172068 None:intergenic 50.0%
CGGTCTTAAACCGCACTTGA+AGG - chr4.4:21170945-21170964 None:intergenic 50.0%
GACATTACCGATCGGAAACC+TGG + chr4.4:21172769-21172788 MS.gene053557:CDS 50.0%
GAGATGTTGTGAAGCCAACG+AGG - chr4.4:21172277-21172296 None:intergenic 50.0%
GCATAGGTTCATGTGATGCC+TGG + chr4.4:21170766-21170785 MS.gene053557:intron 50.0%
GTCTCCATCCACCTGTGTTA+TGG - chr4.4:21172392-21172411 None:intergenic 50.0%
GTGGATGGAGACGAAGAAGT+TGG + chr4.4:21172400-21172419 MS.gene053557:CDS 50.0%
!! TGCTTTGTTTGGTGCTGCAC+TGG + chr4.4:21172956-21172975 MS.gene053557:CDS 50.0%
!!! TGCTGCACTGGCTTTTGGAT+TGG + chr4.4:21172968-21172987 MS.gene053557:CDS 50.0%
!!! TTTGGTGCTGCACTGGCTTT+TGG + chr4.4:21172963-21172982 MS.gene053557:CDS 50.0%
ACGAACCATTTCCCCGTGAG+TGG + chr4.4:21172230-21172249 MS.gene053557:CDS 55.0%
AGGCATCATGTGCGTTGTGC+AGG + chr4.4:21170558-21170577 MS.gene053557:CDS 55.0%
CATCATGTGCGTTGTGCAGG+AGG + chr4.4:21170561-21170580 MS.gene053557:CDS 55.0%
CGGTTGAGCTATCAGGGACT+GGG + chr4.4:21172052-21172071 MS.gene053557:CDS 55.0%
CTGTTCCACTCACGGGGAAA+TGG - chr4.4:21172238-21172257 None:intergenic 55.0%
GCCTTGCTCTCGGCTTCATT+GGG + chr4.4:21171842-21171861 MS.gene053557:CDS 55.0%
TCATGTGCGTTGTGCAGGAG+GGG + chr4.4:21170563-21170582 MS.gene053557:CDS 55.0%
TCGGCTTCATTGGGCTGACT+TGG + chr4.4:21171851-21171870 MS.gene053557:CDS 55.0%
TCGGTTGAGCTATCAGGGAC+TGG + chr4.4:21172051-21172070 MS.gene053557:CDS 55.0%
TGCCTTGCTCTCGGCTTCAT+TGG + chr4.4:21171841-21171860 MS.gene053557:CDS 55.0%
TGGCTCCAAGCCTTCAAGTG+CGG + chr4.4:21170932-21170951 MS.gene053557:intron 55.0%
! CGGCTTCATTGGGCTGACTT+GGG + chr4.4:21171852-21171871 MS.gene053557:CDS 55.0%
! TGGCACTGAAAGAGGTGCAG+AGG + chr4.4:21172539-21172558 MS.gene053557:CDS 55.0%
ACTTGGGCCGCTATTGAGGC+AGG + chr4.4:21171868-21171887 MS.gene053557:CDS 60.0%
GCCCAATGAAGCCGAGAGCA+AGG - chr4.4:21171846-21171865 None:intergenic 60.0%
!! GCTGACTTGGGCCGCTATTG+AGG + chr4.4:21171864-21171883 MS.gene053557:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 21170456 21173031 21170456 ID=MS.gene053557
chr4.4 mRNA 21170456 21173031 21170456 ID=MS.gene053557.t1;Parent=MS.gene053557
chr4.4 exon 21170456 21170719 21170456 ID=MS.gene053557.t1.exon1;Parent=MS.gene053557.t1
chr4.4 CDS 21170456 21170719 21170456 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21171431 21171534 21171431 ID=MS.gene053557.t1.exon2;Parent=MS.gene053557.t1
chr4.4 CDS 21171431 21171534 21171431 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21171623 21171694 21171623 ID=MS.gene053557.t1.exon3;Parent=MS.gene053557.t1
chr4.4 CDS 21171623 21171694 21171623 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21171810 21171948 21171810 ID=MS.gene053557.t1.exon4;Parent=MS.gene053557.t1
chr4.4 CDS 21171810 21171948 21171810 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21172040 21172146 21172040 ID=MS.gene053557.t1.exon5;Parent=MS.gene053557.t1
chr4.4 CDS 21172040 21172146 21172040 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21172223 21172325 21172223 ID=MS.gene053557.t1.exon6;Parent=MS.gene053557.t1
chr4.4 CDS 21172223 21172325 21172223 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21172400 21172438 21172400 ID=MS.gene053557.t1.exon7;Parent=MS.gene053557.t1
chr4.4 CDS 21172400 21172438 21172400 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21172531 21172641 21172531 ID=MS.gene053557.t1.exon8;Parent=MS.gene053557.t1
chr4.4 CDS 21172531 21172641 21172531 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21172755 21172820 21172755 ID=MS.gene053557.t1.exon9;Parent=MS.gene053557.t1
chr4.4 CDS 21172755 21172820 21172755 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
chr4.4 exon 21172909 21173031 21172909 ID=MS.gene053557.t1.exon10;Parent=MS.gene053557.t1
chr4.4 CDS 21172909 21173031 21172909 ID=cds.MS.gene053557.t1;Parent=MS.gene053557.t1
Gene Sequence

>MS.gene053557

ATGTCATGTTGGTTAATTTTCAGGTGTCATGTAGTTTCCCAAAGTTTAAAATGTAGTAGTGGTGTGGAAAAAGTCTTCCATAGGAGATTTCATGTTCAAAGAAGGCATCATGTGCGTTGTGCAGGAGGGGCTGAATTGCCCTCTTCTTCTAGTTCTAGCTTTGAAGATGTTGGAGAAGAAATTCAAGATGATATTTCAATGGAAACATTGATTTGGAGGGCTATCAAGTTGCCTATTTATTCTGTTGCGTTGGTCCCTCTTACTGTGAGCATCTCAACTATATATACTTTTAGATTAATTGTTAAATTCAGCATAGGTTCATGTGATGCCTGGGTATGAGATAAGGATCAAGATGTTTTGATTTACAGTTACAGTTGCATTACAGTCTTTTATATTGTATAAAATTATGAACAGATATGCTACATGCTAATGCAGCTGTAATTACAGTTCTGGAAGAGTTTGAAACCTTTATATTGTGGCTCCAAGCCTTCAAGTGCGGTTTAAGACCGCAATTTAAAACTATCAGTATTCTAATTTCTAACTGCCAACTCAAACTTAGAAATGTGAAATAAAACTATAGTTTTATACCCTATTTGAATGAAATTGGGGGTCAGAGTAGGATTTTTATTGACATGTAGATGTAGGGGATAGGAAAACTTTTTCGAACATAGTAACCTGAACTTTTCATTACCTTCGGATTAAGGCCAAGAAAAGTTATGTAGAAGGAAGGAACTGTATTTTAAGGCATATTGAGTTTCTAGAGAAGACTTTCCTCAATTATTTATCCCACCTTTTCCTATCTTAATGTTAAACTCGTTGCCATAGGTATGTACATGAACTAGAACTTACCAATTTTTTATTGCATGATAGGAATTCGTGTCATTTTATGCAATGAACCAGTCTTACAGTTTTGTTTTTGTATCAATATTACCCTATATTTATGAGAGAGTCTAAATGTATTGGTATAACAAATAGGTAGGCAGTGCAGCAGCTTATTTACAGACAGCCATCTTCTCAGCTAAATGCTATTTTGTTTTATTGGCTTCTTCAGTTCTTGTTATTACCTGGCTCAACTTGAGGTAAATTTATAACTTGTTGCTTTGCTAGCTATTGTTTTCATTTTGGAATCAATGGTAGCAACTCTGCAGTTTCATATGGTTATGGCAGCAATGACGTTTATGATTTTGACACTGGAGTTGACAAGAACAAAAAGGAATCAGTTGTAAACTTGGTTAGAAGGTTAGTTTCTCTCAAACTTGTATTTATTATTTGCTTATTTTCTGTTCGTTCTGTACATGTTTGAATAAACAAAAATAACTTGAATCGTTTTCTTCCTCGTGTTGAATTTGGAAAGCCGTACAGGAATCTTTGTTGTTGCTTACTTATGCCTTGCTCTCGGCTTCATTGGGCTGACTTGGGCCGCTATTGAGGCAGGAAACCTGCGTTCAGTATTGTTTCTCACTTGTGCAATTATTTGCGGCTATATATATCAGGTAAAAGTTCCTGCTGATATCATAATCTTGTTGTTGCAGTGAAAATTTTCAGTCTTAAGCTAAATATCAATTTGACTCATCGCTGCTGTAGTGTCCACCATTTCGGTTGAGCTATCAGGGACTGGGAGAGCCTCTGTGTTTTGCAGCATTTGGTCCTTTTGCCACTACTGCTTTTTATTTAGTACAAGGCAGTGCAAGGTTATCTTAGTTACCTAACTACAGAGTTATAATATTTACTATTCATGGCTTGATTTTTGTCTCTGATTGATTTCAGTAGCGTGACGAACCATTTCCCCGTGAGTGGAACAGTTCTTTCAGCATCAATCCTCGTTGGCTTCACAACATCTCTTATCCTTTTTTGCAGTCACTTTCATCAGGTACCGTTATTTTTTAGTTCCAATTACAAGAGTACCTTCAAGTTGGTGACCTTTTTATTTTGTCCATAACACAGGTGGATGGAGACGAAGAAGTTGGAAAATTATCGCCTTTGGTAGATACACTTTGCTATATTGAACATTTTTCTTTATCTATGTTGTTGATGTGAATCTAATAACAAATATTTATTTCTTATTTTTCTTTCAGGTTAGACTTGGCACTGAAAGAGGTGCAGAGGTAGTGAAAGTAGCAGTCTTGTCGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAAGCAAGGCACTTCCTCTCACTTGTATTGTGAGTGCTTTATGAATCTCATATCTGTTTTCTTCCTTTCTTCGCGAGTATAGTTGCTATTTGGACCATGCACTTATGATTTAATCTTTTGGTTATGAATATGGCTGTACTAGTTCCTTTGTGCATTGACATTACCGATCGGAAACCTGGTAGTTAAATTTGTCCAAGACAATCACAAGGCAAGTGAAAAACTGTTGTTGAGTCTTTGTTATACTAATATATTTTCTAGAGTTCTTTTTATATTAAAACTAGGTTGTGTTGTTGCAGGACAAAGATAAGATTTTCATGGCCAAGTACTTTTGTGTGAGGTTGCATGCTTTGTTTGGTGCTGCACTGGCTTTTGGATTGGTATTGGCTAGAATGGTTAACAGAAAGCTACTACTCCAATGA

Protein sequence

>MS.gene053557.t1

MSCWLIFRCHVVSQSLKCSSGVEKVFHRRFHVQRRHHVRCAGGAELPSSSSSSFEDVGEEIQDDISMETLIWRAIKLPIYSVALVPLTVGSAAAYLQTAIFSAKCYFVLLASSVLVITWLNLSNDVYDFDTGVDKNKKESVVNLVRSRTGIFVVAYLCLALGFIGLTWAAIEAGNLRSVLFLTCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLVQGSASSVTNHFPVSGTVLSASILVGFTTSLILFCSHFHQVDGDEEVGKLSPLVRLGTERGAEVVKVAVLSLYALLVAFGLSKALPLTCIFLCALTLPIGNLVVKFVQDNHKDKDKIFMAKYFCVRLHALFGAALAFGLVLARMVNRKLLLQ