Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64143.t1 | XP_003615175.1 | 83.9 | 379 | 39 | 3 | 1 | 377 | 1 | 359 | 2.80E-172 | 614.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64143.t1 | Q9LHN7 | 72.3 | 350 | 75 | 3 | 30 | 377 | 33 | 362 | 8.9e-143 | 508.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64143.t1 | G7KAH9 | 83.9 | 379 | 39 | 3 | 1 | 377 | 1 | 359 | 2.0e-172 | 614.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050073 | MS.gene64143 | 0.827406 | 1.59E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64143.t1 | MTR_5g064750 | 87.071 | 379 | 27 | 3 | 1 | 377 | 1 | 359 | 0.0 | 621 |
| MS.gene64143.t1 | MTR_8g085630 | 62.604 | 361 | 115 | 2 | 19 | 377 | 32 | 374 | 9.32e-158 | 452 |
| MS.gene64143.t1 | MTR_1g112950 | 47.507 | 381 | 178 | 4 | 5 | 385 | 4 | 362 | 3.32e-115 | 343 |
| MS.gene64143.t1 | MTR_5g026780 | 47.139 | 367 | 173 | 4 | 19 | 385 | 22 | 367 | 3.71e-107 | 323 |
| MS.gene64143.t1 | MTR_5g026780 | 47.139 | 367 | 173 | 4 | 19 | 385 | 38 | 383 | 3.92e-107 | 324 |
| MS.gene64143.t1 | MTR_0031s0060 | 44.800 | 375 | 155 | 6 | 11 | 385 | 130 | 452 | 9.87e-100 | 310 |
| MS.gene64143.t1 | MTR_5g005160 | 43.575 | 358 | 179 | 5 | 23 | 379 | 6 | 341 | 1.40e-89 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64143.t1 | AT3G13620 | 70.635 | 378 | 88 | 4 | 12 | 386 | 15 | 372 | 0.0 | 523 |
| MS.gene64143.t1 | AT1G31830 | 47.568 | 370 | 170 | 5 | 19 | 386 | 23 | 370 | 6.37e-112 | 336 |
| MS.gene64143.t1 | AT5G05630 | 45.052 | 384 | 189 | 4 | 5 | 386 | 29 | 392 | 7.80e-112 | 336 |
| MS.gene64143.t1 | AT1G31830 | 47.568 | 370 | 170 | 5 | 19 | 386 | 39 | 386 | 9.78e-112 | 336 |
| MS.gene64143.t1 | AT1G31820 | 46.995 | 366 | 172 | 4 | 21 | 386 | 30 | 373 | 1.74e-104 | 317 |
| MS.gene64143.t1 | AT3G19553 | 46.982 | 381 | 173 | 7 | 1 | 379 | 1 | 354 | 3.25e-103 | 313 |
Find 75 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGCACTACTACTTAAT+TGG | 0.091375 | 5.1:+49708118 | None:intergenic |
| CTGGAAAATGGTTGAAAATT+TGG | 0.098359 | 5.1:-49708185 | MS.gene64143:CDS |
| TACACCTTGGTTGGGTATTT+TGG | 0.112839 | 5.1:-49708028 | MS.gene64143:intron |
| CCCATTAATGAGCCTGAAAA+TGG | 0.184241 | 5.1:+49708738 | None:intergenic |
| CATTTATGTGGATTTATCTT+AGG | 0.215603 | 5.1:+49708474 | None:intergenic |
| TCCTCATCTTTCCTTTCATT+TGG | 0.233880 | 5.1:-49709721 | MS.gene64143:CDS |
| GTATAGTTTGGGTATGATAT+TGG | 0.268899 | 5.1:-49707935 | MS.gene64143:intron |
| CTAAGATAAATCCACATAAA+TGG | 0.281292 | 5.1:-49708473 | MS.gene64143:CDS |
| CTGAGATTATTGCTGGAAAA+TGG | 0.284737 | 5.1:-49708197 | MS.gene64143:CDS |
| TAGTAGTGCTTATCAAGTTT+TGG | 0.284965 | 5.1:-49708109 | MS.gene64143:CDS |
| TTGAAAATTTGGGTTGAAAT+TGG | 0.294482 | 5.1:-49708174 | MS.gene64143:CDS |
| TGAGGAATATGAGAGGGATT+AGG | 0.299565 | 5.1:+49709825 | None:intergenic |
| TCAGCAGTTATAAGAGCTTC+TGG | 0.304684 | 5.1:+49709692 | None:intergenic |
| AAATTCATTGGAATCTTATA+AGG | 0.308786 | 5.1:+49707862 | None:intergenic |
| GAGGAATATGAGAGGGATTA+GGG | 0.310047 | 5.1:+49709826 | None:intergenic |
| CCACATAAATGGATTAGTTT+AGG | 0.314833 | 5.1:-49708462 | MS.gene64143:CDS |
| GGGGCCGGCGGCTTGAACGG+CGG | 0.318168 | 5.1:+49709763 | None:intergenic |
| TGGAAAATGGTTGAAAATTT+GGG | 0.326002 | 5.1:-49708184 | MS.gene64143:CDS |
| ATGGATTAGTTTAGGTCAAA+AGG | 0.342823 | 5.1:-49708454 | MS.gene64143:CDS |
| TGCAGTTTGCTTTGCGGCGA+CGG | 0.343160 | 5.1:-49709361 | MS.gene64143:CDS |
| GTGCGTTGCAGTTTGCTTTG+CGG | 0.343195 | 5.1:-49709367 | MS.gene64143:CDS |
| TTTGGGAATGGTGGTGGTGG+TGG | 0.349220 | 5.1:+49709871 | None:intergenic |
| AATCAAAGTGAATGGGAAAC+TGG | 0.353220 | 5.1:-49708237 | MS.gene64143:CDS |
| TGACCTAATTCCACAAAACT+TGG | 0.367898 | 5.1:+49708062 | None:intergenic |
| TATACTGGTTTAACAATTGT+TGG | 0.372888 | 5.1:-49708564 | MS.gene64143:CDS |
| TTTGTGGAATTAGGTCAAAA+TGG | 0.373378 | 5.1:-49708056 | MS.gene64143:CDS |
| GGGCCGGCGGCTTGAACGGC+GGG | 0.382006 | 5.1:+49709764 | None:intergenic |
| ATAAGCACTACTACTTAATT+GGG | 0.402363 | 5.1:+49708119 | None:intergenic |
| GATTAGGGTTAGTTTCTTTG+TGG | 0.402905 | 5.1:+49709841 | None:intergenic |
| AAAAGGGTGTTAAGAAAGAT+TGG | 0.406094 | 5.1:-49708437 | MS.gene64143:CDS |
| CAAGCTGCTGAGATTATTGC+TGG | 0.414273 | 5.1:-49708204 | MS.gene64143:CDS |
| GCAGTTTGCTTTGCGGCGAC+GGG | 0.421097 | 5.1:-49709360 | MS.gene64143:CDS |
| ATATAATCGATGCAGAGAAC+AGG | 0.424951 | 5.1:+49708672 | None:intergenic |
| TGGATTAGTTTAGGTCAAAA+GGG | 0.430138 | 5.1:-49708453 | MS.gene64143:CDS |
| CAGGCTCATTAATGGGTACA+TGG | 0.430455 | 5.1:-49708731 | MS.gene64143:CDS |
| GATAATGTTAGTACTTTAGC+TGG | 0.431843 | 5.1:-49708372 | MS.gene64143:CDS |
| GGTGGTGGTGGTTGGAGCGG+TGG | 0.435676 | 5.1:+49709889 | None:intergenic |
| ACGGCGGGTTCTTCGCCGTA+TGG | 0.438043 | 5.1:+49709779 | None:intergenic |
| TAGGGTTAGTTTCTTTGTGG+TGG | 0.446224 | 5.1:+49709844 | None:intergenic |
| ATGGTTTAATACACCTTGGT+TGG | 0.448767 | 5.1:-49708037 | MS.gene64143:CDS |
| TGGTTTAATACACCTTGGTT+GGG | 0.457261 | 5.1:-49708036 | MS.gene64143:CDS |
| CGGCGGGTTCTTCGCCGTAT+GGG | 0.457464 | 5.1:+49709780 | None:intergenic |
| CCTAAACTAATCCATTTATG+TGG | 0.478543 | 5.1:+49708462 | None:intergenic |
| TTCTTCGCCGTATGGGCCGC+CGG | 0.479835 | 5.1:+49709787 | None:intergenic |
| TGGTGGTTGGAGCGGTGGAA+AGG | 0.490716 | 5.1:+49709894 | None:intergenic |
| TGAATGTGAATCAAAGTGAA+TGG | 0.492330 | 5.1:-49708245 | MS.gene64143:CDS |
| GAAGCCGAGAAGTGCAAAGA+GGG | 0.499008 | 5.1:+49709742 | None:intergenic |
| ATAAGAGACATCAAAACAAA+TGG | 0.501930 | 5.1:+49708504 | None:intergenic |
| GAAGTAGCCGGCGGCCCATA+CGG | 0.505411 | 5.1:-49709794 | MS.gene64143:CDS |
| CCATTAATGAGCCTGAAAAT+GGG | 0.509829 | 5.1:+49708739 | None:intergenic |
| GACCTAATTCCACAAAACTT+GGG | 0.511997 | 5.1:+49708063 | None:intergenic |
| CAAAATGGTTTAATACACCT+TGG | 0.521677 | 5.1:-49708041 | MS.gene64143:CDS |
| TTATAAGGTCTCACCAACAT+TGG | 0.535241 | 5.1:+49707877 | None:intergenic |
| GAACCCGCCGTTCAAGCCGC+CGG | 0.542038 | 5.1:-49709767 | MS.gene64143:CDS |
| ATCAAAGTGAATGGGAAACT+GGG | 0.545968 | 5.1:-49708236 | MS.gene64143:CDS |
| GGTACATGGAAATTCCTTAG+TGG | 0.551806 | 5.1:-49708717 | MS.gene64143:CDS |
| TCTGGAATGCTCCAAATGAA+AGG | 0.553107 | 5.1:+49709710 | None:intergenic |
| GAATGTGAATCAAAGTGAAT+GGG | 0.554110 | 5.1:-49708244 | MS.gene64143:CDS |
| CTATATTAATGACACCACTA+AGG | 0.563126 | 5.1:+49708703 | None:intergenic |
| AGCCGAGAAGTGCAAAGAGG+GGG | 0.568985 | 5.1:+49709744 | None:intergenic |
| CCCGTTTATCCAGGAAACGG+TGG | 0.599585 | 5.1:-49708792 | MS.gene64143:intron |
| ACAGCAATTAAAAGAGCCAA+AGG | 0.600069 | 5.1:+49708321 | None:intergenic |
| AAGCCGAGAAGTGCAAAGAG+GGG | 0.604467 | 5.1:+49709743 | None:intergenic |
| AAATAGATGAGGAATATGAG+AGG | 0.613347 | 5.1:+49709818 | None:intergenic |
| AATAGATGAGGAATATGAGA+GGG | 0.616828 | 5.1:+49709819 | None:intergenic |
| GGAAGCCGAGAAGTGCAAAG+AGG | 0.617059 | 5.1:+49709741 | None:intergenic |
| TATAATCGATGCAGAGAACA+GGG | 0.617544 | 5.1:+49708673 | None:intergenic |
| CGGCTACTTCAAAATAGATG+AGG | 0.639131 | 5.1:+49709807 | None:intergenic |
| TCCAAATGAAAGGAAAGATG+AGG | 0.647512 | 5.1:+49709720 | None:intergenic |
| CGAACAAGATGCAACCGCGA+TGG | 0.650501 | 5.1:-49709333 | MS.gene64143:CDS |
| CAACAAACTTGCTGCCATCG+CGG | 0.651557 | 5.1:+49709319 | None:intergenic |
| GAGATGGAAGAAGCCAATGT+TGG | 0.652995 | 5.1:-49707890 | MS.gene64143:CDS |
| AAAATTCAAGTTCCAAAACA+GGG | 0.673667 | 5.1:+49708398 | None:intergenic |
| AAGAGAATTGCTATGTAACG+AGG | 0.693948 | 5.1:+49708615 | None:intergenic |
| GATACCAAAATACCCAACCA+AGG | 0.695981 | 5.1:+49708024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGTATAAAATGTTAAA+TGG | - | chr5.1:49708895-49708914 | MS.gene64143:intron | 10.0% |
| !! | TAATAATAAAAAAATAGCAT+TGG | + | chr5.1:49708722-49708741 | None:intergenic | 10.0% |
| !!! | TAATTTAAAGTAAAAACAAA+TGG | - | chr5.1:49708310-49708329 | MS.gene64143:CDS | 10.0% |
| !! | AAAGAAGAAAAAAATTACTT+CGG | + | chr5.1:49708640-49708659 | None:intergenic | 15.0% |
| !! | AAAATGTTAAATGGTACAAA+GGG | - | chr5.1:49708904-49708923 | MS.gene64143:intron | 20.0% |
| !! | TAAAATGTTAAATGGTACAA+AGG | - | chr5.1:49708903-49708922 | MS.gene64143:intron | 20.0% |
| !! | TTAAATTAATCCAACGATTA+TGG | + | chr5.1:49708298-49708317 | None:intergenic | 20.0% |
| !!! | AGCTAATTTTTTGTATAGTT+TGG | - | chr5.1:49709838-49709857 | MS.gene64143:CDS | 20.0% |
| !!! | GCTAATTTTTTGTATAGTTT+GGG | - | chr5.1:49709839-49709858 | MS.gene64143:CDS | 20.0% |
| !!! | TTAGTTTTCGTTCTTTTTTT+AGG | - | chr5.1:49708681-49708700 | MS.gene64143:CDS | 20.0% |
| !!! | TTGTCTTTTCTTAATTATAC+TGG | - | chr5.1:49709206-49709225 | MS.gene64143:intron | 20.0% |
| ! | AACAATTGCAGTTTCTTATA+TGG | - | chr5.1:49709793-49709812 | MS.gene64143:CDS | 25.0% |
| ! | ATAAGAGACATCAAAACAAA+TGG | + | chr5.1:49709284-49709303 | None:intergenic | 25.0% |
| ! | ATAAGCACTACTACTTAATT+GGG | + | chr5.1:49709669-49709688 | None:intergenic | 25.0% |
| ! | CATTTATGTGGATTTATCTT+AGG | + | chr5.1:49709314-49709333 | None:intergenic | 25.0% |
| ! | CTAAGATAAATCCACATAAA+TGG | - | chr5.1:49709312-49709331 | MS.gene64143:intron | 25.0% |
| ! | TGGAAAATGGTTGAAAATTT+GGG | - | chr5.1:49709601-49709620 | MS.gene64143:intron | 25.0% |
| !! | AAAAATTCAAGTTCCAAAAC+AGG | + | chr5.1:49709391-49709410 | None:intergenic | 25.0% |
| !! | AAAATTCAAGTTCCAAAACA+GGG | + | chr5.1:49709390-49709409 | None:intergenic | 25.0% |
| !!! | ACATTTTCAATGATTTGTAG+GGG | + | chr5.1:49708173-49708192 | None:intergenic | 25.0% |
| !!! | GAAAAGTTTTGCTGTATTTT+GGG | + | chr5.1:49708229-49708248 | None:intergenic | 25.0% |
| !!! | GACATTTTCAATGATTTGTA+GGG | + | chr5.1:49708174-49708193 | None:intergenic | 25.0% |
| !!! | GGAATTTTTGATGATTTGTA+GGG | - | chr5.1:49708934-49708953 | MS.gene64143:intron | 25.0% |
| !!! | GTTTTGGAACTTGAATTTTT+GGG | - | chr5.1:49709391-49709410 | MS.gene64143:intron | 25.0% |
| !!! | GTTTTTTTTCTCGAAAATGT+TGG | - | chr5.1:49708750-49708769 | MS.gene64143:CDS | 25.0% |
| !!! | TATACTGGTTTAACAATTGT+TGG | - | chr5.1:49709221-49709240 | MS.gene64143:intron | 25.0% |
| !!! | TGACATTTTCAATGATTTGT+AGG | + | chr5.1:49708175-49708194 | None:intergenic | 25.0% |
| !!! | TGGAATTTTTGATGATTTGT+AGG | - | chr5.1:49708933-49708952 | MS.gene64143:intron | 25.0% |
| !!! | TGTTTTGGAACTTGAATTTT+TGG | - | chr5.1:49709390-49709409 | MS.gene64143:intron | 25.0% |
| !!! | TTGAAAATTTGGGTTGAAAT+TGG | - | chr5.1:49709611-49709630 | MS.gene64143:intron | 25.0% |
| AAATAGATGAGGAATATGAG+AGG | + | chr5.1:49707970-49707989 | None:intergenic | 30.0% | |
| AAGGTATAATGTCCGATAAA+CGG | + | chr5.1:49708127-49708146 | None:intergenic | 30.0% | |
| AATAGATGAGGAATATGAGA+GGG | + | chr5.1:49707969-49707988 | None:intergenic | 30.0% | |
| AATGGTACAAAGGGTAAAAT+TGG | - | chr5.1:49708913-49708932 | MS.gene64143:intron | 30.0% | |
| ACAAAAAACACAGTTGAAAC+CGG | + | chr5.1:49708824-49708843 | None:intergenic | 30.0% | |
| ATGGAATACTAGTATACTAC+AGG | + | chr5.1:49708279-49708298 | None:intergenic | 30.0% | |
| CAAAATGGTTTAATACACCT+TGG | - | chr5.1:49709744-49709763 | MS.gene64143:CDS | 30.0% | |
| CCTAAACTAATCCATTTATG+TGG | + | chr5.1:49709326-49709345 | None:intergenic | 30.0% | |
| CTATATTAATGACACCACTA+AGG | + | chr5.1:49709085-49709104 | None:intergenic | 30.0% | |
| CTGGAAAATGGTTGAAAATT+TGG | - | chr5.1:49709600-49709619 | MS.gene64143:intron | 30.0% | |
| GAATGTGAATCAAAGTGAAT+GGG | - | chr5.1:49709541-49709560 | MS.gene64143:intron | 30.0% | |
| GACAATAATTGCTTTCTGTT+GGG | + | chr5.1:49708520-49708539 | None:intergenic | 30.0% | |
| GATAAGCACTACTACTTAAT+TGG | + | chr5.1:49709670-49709689 | None:intergenic | 30.0% | |
| GATAATGTTAGTACTTTAGC+TGG | - | chr5.1:49709413-49709432 | MS.gene64143:intron | 30.0% | |
| GGGAGAAATCAAATAACAAA+GGG | + | chr5.1:49708204-49708223 | None:intergenic | 30.0% | |
| GTATAGTTTGGGTATGATAT+TGG | - | chr5.1:49709850-49709869 | MS.gene64143:CDS | 30.0% | |
| TACTAGTATTCCATAATCGT+TGG | - | chr5.1:49708285-49708304 | MS.gene64143:CDS | 30.0% | |
| TATGATCTGGGTATTAATCT+CGG | + | chr5.1:49708251-49708270 | None:intergenic | 30.0% | |
| TGAATGTGAATCAAAGTGAA+TGG | - | chr5.1:49709540-49709559 | MS.gene64143:intron | 30.0% | |
| TTTGTGGAATTAGGTCAAAA+TGG | - | chr5.1:49709729-49709748 | MS.gene64143:CDS | 30.0% | |
| ! | AAATGATTCTATGCCTTTTC+CGG | - | chr5.1:49708802-49708821 | MS.gene64143:intron | 30.0% |
| ! | AAATGTTGGATTGTGTTTTC+CGG | - | chr5.1:49708764-49708783 | MS.gene64143:CDS | 30.0% |
| ! | ACAAAGTTTTCGTTGTCTAA+TGG | - | chr5.1:49708586-49708605 | MS.gene64143:CDS | 30.0% |
| ! | ACCAAAGAAAACTTTTCCTT+TGG | - | chr5.1:49709448-49709467 | MS.gene64143:intron | 30.0% |
| ! | AGTAGTGCTTATCAAGTTTT+GGG | - | chr5.1:49709677-49709696 | MS.gene64143:intron | 30.0% |
| ! | TAGTAGTGCTTATCAAGTTT+TGG | - | chr5.1:49709676-49709695 | MS.gene64143:intron | 30.0% |
| ! | TTTTCTTCAATACCCTGTTT+TGG | - | chr5.1:49709375-49709394 | MS.gene64143:intron | 30.0% |
| !! | AAAAGGGTGTTAAGAAAGAT+TGG | - | chr5.1:49709348-49709367 | MS.gene64143:CDS | 30.0% |
| !! | ATGGATTAGTTTAGGTCAAA+AGG | - | chr5.1:49709331-49709350 | MS.gene64143:CDS | 30.0% |
| !! | CATAGAATCATTTCTAGAGT+GGG | + | chr5.1:49708795-49708814 | None:intergenic | 30.0% |
| !! | CCACATAAATGGATTAGTTT+AGG | - | chr5.1:49709323-49709342 | MS.gene64143:intron | 30.0% |
| !! | GGAAAAGTTTTGCTGTATTT+TGG | + | chr5.1:49708230-49708249 | None:intergenic | 30.0% |
| !! | TGGAATTTGCTTCTTTTCTT+TGG | - | chr5.1:49709870-49709889 | MS.gene64143:CDS | 30.0% |
| !! | TGGATTAGTTTAGGTCAAAA+GGG | - | chr5.1:49709332-49709351 | MS.gene64143:CDS | 30.0% |
| !!! | TCAACTGTGTTTTTTGTGTA+GGG | - | chr5.1:49708827-49708846 | MS.gene64143:intron | 30.0% |
| !!! | TTCAACTGTGTTTTTTGTGT+AGG | - | chr5.1:49708826-49708845 | MS.gene64143:intron | 30.0% |
| !!! | TTCTTTGTGGTGGATTTTTT+GGG | + | chr5.1:49707934-49707953 | None:intergenic | 30.0% |
| !!! | TTTCTTTGTGGTGGATTTTT+TGG | + | chr5.1:49707935-49707954 | None:intergenic | 30.0% |
| AAGAGAATTGCTATGTAACG+AGG | + | chr5.1:49709173-49709192 | None:intergenic | 35.0% | |
| AATCAAAGTGAATGGGAAAC+TGG | - | chr5.1:49709548-49709567 | MS.gene64143:intron | 35.0% | |
| ACAGCAATTAAAAGAGCCAA+AGG | + | chr5.1:49709467-49709486 | None:intergenic | 35.0% | |
| ACTACAGGAAAACTATGATC+TGG | + | chr5.1:49708264-49708283 | None:intergenic | 35.0% | |
| ATATAATCGATGCAGAGAAC+AGG | + | chr5.1:49709116-49709135 | None:intergenic | 35.0% | |
| ATCAAAGTGAATGGGAAACT+GGG | - | chr5.1:49709549-49709568 | MS.gene64143:intron | 35.0% | |
| ATGGTTTAATACACCTTGGT+TGG | - | chr5.1:49709748-49709767 | MS.gene64143:CDS | 35.0% | |
| CCATTAATGAGCCTGAAAAT+GGG | + | chr5.1:49709049-49709068 | None:intergenic | 35.0% | |
| CGACAATAATTGCTTTCTGT+TGG | + | chr5.1:49708521-49708540 | None:intergenic | 35.0% | |
| CTAAACCAATTAGACCAAGA+GGG | - | chr5.1:49708357-49708376 | MS.gene64143:CDS | 35.0% | |
| CTACAGGAAAACTATGATCT+GGG | + | chr5.1:49708263-49708282 | None:intergenic | 35.0% | |
| CTGAATTAACCACCGTTTAT+CGG | - | chr5.1:49708112-49708131 | MS.gene64143:CDS | 35.0% | |
| CTGAGATTATTGCTGGAAAA+TGG | - | chr5.1:49709588-49709607 | MS.gene64143:intron | 35.0% | |
| GAAAGCAATTATTGTCGTTC+TGG | - | chr5.1:49708524-49708543 | MS.gene64143:CDS | 35.0% | |
| GACCTAATTCCACAAAACTT+GGG | + | chr5.1:49709725-49709744 | None:intergenic | 35.0% | |
| GGGGAGAAATCAAATAACAA+AGG | + | chr5.1:49708205-49708224 | None:intergenic | 35.0% | |
| GTTTAATCTATTGCTGAAGC+AGG | + | chr5.1:49708498-49708517 | None:intergenic | 35.0% | |
| TATAATCGATGCAGAGAACA+GGG | + | chr5.1:49709115-49709134 | None:intergenic | 35.0% | |
| TCCAAATGAAAGGAAAGATG+AGG | + | chr5.1:49708068-49708087 | None:intergenic | 35.0% | |
| TCCTCATCTTTCCTTTCATT+TGG | - | chr5.1:49708064-49708083 | MS.gene64143:CDS | 35.0% | |
| TCGTTGTCTAATGGCATATA+CGG | - | chr5.1:49708595-49708614 | MS.gene64143:CDS | 35.0% | |
| TCTAAACCAATTAGACCAAG+AGG | - | chr5.1:49708356-49708375 | MS.gene64143:CDS | 35.0% | |
| TGACCTAATTCCACAAAACT+TGG | + | chr5.1:49709726-49709745 | None:intergenic | 35.0% | |
| TGGTTTAATACACCTTGGTT+GGG | - | chr5.1:49709749-49709768 | MS.gene64143:CDS | 35.0% | |
| TTATAAGGTCTCACCAACAT+TGG | + | chr5.1:49709911-49709930 | None:intergenic | 35.0% | |
| ! | CAATGATTTGTAGGGGTAAA+GGG | + | chr5.1:49708166-49708185 | None:intergenic | 35.0% |
| ! | CTTCTTTTCTTTGGTTGAGA+TGG | - | chr5.1:49709879-49709898 | MS.gene64143:CDS | 35.0% |
| ! | GCATAGAATCATTTCTAGAG+TGG | + | chr5.1:49708796-49708815 | None:intergenic | 35.0% |
| ! | GCCAAAGGAAAAGTTTTCTT+TGG | + | chr5.1:49709452-49709471 | None:intergenic | 35.0% |
| ! | TCAATGATTTGTAGGGGTAA+AGG | + | chr5.1:49708167-49708186 | None:intergenic | 35.0% |
| ! | TTTGATGATTTGTAGGGTGA+AGG | - | chr5.1:49708940-49708959 | MS.gene64143:intron | 35.0% |
| !! | AAGTTTTGCTGTATTTTGGG+TGG | + | chr5.1:49708226-49708245 | None:intergenic | 35.0% |
| !! | AGTTTTGCTGTATTTTGGGT+GGG | + | chr5.1:49708225-49708244 | None:intergenic | 35.0% |
| !! | CCATTTTCAGGCTCATTAAT+GGG | - | chr5.1:49709047-49709066 | MS.gene64143:intron | 35.0% |
| !! | GATTAGGGTTAGTTTCTTTG+TGG | + | chr5.1:49707947-49707966 | None:intergenic | 35.0% |
| !! | TTATTGTCGTTCTGGAAAAG+TGG | - | chr5.1:49708532-49708551 | MS.gene64143:CDS | 35.0% |
| !!! | AAACGGTGGTTTTGTTATCT+GGG | - | chr5.1:49709007-49709026 | MS.gene64143:intron | 35.0% |
| !!! | ATTCCACTTTTTGCTGTTAC+TGG | - | chr5.1:49709512-49709531 | MS.gene64143:intron | 35.0% |
| !!! | CAACTGTGTTTTTTGTGTAG+GGG | - | chr5.1:49708828-49708847 | MS.gene64143:intron | 35.0% |
| !!! | CTCATCTATTTTGAAGTAGC+CGG | - | chr5.1:49707979-49707998 | MS.gene64143:intron | 35.0% |
| !!! | CTTTTCCCTGTTTTTGAATC+TGG | - | chr5.1:49709143-49709162 | MS.gene64143:intron | 35.0% |
| !!! | GTGCTGTTTTATCAGCAATT+GGG | - | chr5.1:49709633-49709652 | MS.gene64143:intron | 35.0% |
| !!! | TGCTTATCAAGTTTTGGGTA+TGG | - | chr5.1:49709682-49709701 | MS.gene64143:CDS | 35.0% |
| AACACAGTTGAAACCGGAAA+AGG | + | chr5.1:49708818-49708837 | None:intergenic | 40.0% | |
| ATAACAAAACCACCGTTTCC+TGG | + | chr5.1:49709005-49709024 | None:intergenic | 40.0% | |
| ATCAACATAGAGGTTGTGGT+TGG | - | chr5.1:49708385-49708404 | MS.gene64143:CDS | 40.0% | |
| CACAATCAACATAGAGGTTG+TGG | - | chr5.1:49708381-49708400 | MS.gene64143:CDS | 40.0% | |
| CCCATTAATGAGCCTGAAAA+TGG | + | chr5.1:49709050-49709069 | None:intergenic | 40.0% | |
| CGGCTACTTCAAAATAGATG+AGG | + | chr5.1:49707981-49708000 | None:intergenic | 40.0% | |
| GAGGAATATGAGAGGGATTA+GGG | + | chr5.1:49707962-49707981 | None:intergenic | 40.0% | |
| GATACCAAAATACCCAACCA+AGG | + | chr5.1:49709764-49709783 | None:intergenic | 40.0% | |
| GCCAACCAGATTCAAAAACA+GGG | + | chr5.1:49709151-49709170 | None:intergenic | 40.0% | |
| GGTACATGGAAATTCCTTAG+TGG | - | chr5.1:49709068-49709087 | MS.gene64143:intron | 40.0% | |
| GTATAATGTCCGATAAACGG+TGG | + | chr5.1:49708124-49708143 | None:intergenic | 40.0% | |
| TAAAACTTCCCCGTTTATCC+AGG | - | chr5.1:49708984-49709003 | MS.gene64143:intron | 40.0% | |
| TCAGCAGTTATAAGAGCTTC+TGG | + | chr5.1:49708096-49708115 | None:intergenic | 40.0% | |
| TGAGGAATATGAGAGGGATT+AGG | + | chr5.1:49707963-49707982 | None:intergenic | 40.0% | |
| ! | AAATGGGCCGAAAGCTTTTT+CGG | + | chr5.1:49709033-49709052 | None:intergenic | 40.0% |
| ! | AGGGTGAAGGTATAGATGTA+GGG | - | chr5.1:49708953-49708972 | MS.gene64143:intron | 40.0% |
| ! | AGGTATAGATGTAGGGGTAT+AGG | - | chr5.1:49708960-49708979 | MS.gene64143:intron | 40.0% |
| ! | GGAATTTTGCCCAAGTTTTG+TGG | - | chr5.1:49709713-49709732 | MS.gene64143:CDS | 40.0% |
| ! | GGTATAGATGTAGGGGTATA+GGG | - | chr5.1:49708961-49708980 | MS.gene64143:intron | 40.0% |
| ! | TACACCTTGGTTGGGTATTT+TGG | - | chr5.1:49709757-49709776 | MS.gene64143:CDS | 40.0% |
| ! | TAGGGTGAAGGTATAGATGT+AGG | - | chr5.1:49708952-49708971 | MS.gene64143:intron | 40.0% |
| ! | TATGTTGATTGTGTCCCTCT+TGG | + | chr5.1:49708374-49708393 | None:intergenic | 40.0% |
| ! | TCTGGAATGCTCCAAATGAA+AGG | + | chr5.1:49708078-49708097 | None:intergenic | 40.0% |
| !! | ATTTCTAGAGTGGGTATGTC+CGG | + | chr5.1:49708786-49708805 | None:intergenic | 40.0% |
| !! | CCCATTTTCAGGCTCATTAA+TGG | - | chr5.1:49709046-49709065 | MS.gene64143:intron | 40.0% |
| !! | GTTTTGCTGTATTTTGGGTG+GGG | + | chr5.1:49708224-49708243 | None:intergenic | 40.0% |
| !! | GTTTTGGGTATGGCTGAAAT+TGG | - | chr5.1:49709692-49709711 | MS.gene64143:CDS | 40.0% |
| !! | TAGGGTTAGTTTCTTTGTGG+TGG | + | chr5.1:49707944-49707963 | None:intergenic | 40.0% |
| !! | TGCCCAAGTTTTGTGGAATT+AGG | - | chr5.1:49709720-49709739 | MS.gene64143:CDS | 40.0% |
| !!! | ATCTATTTTGAAGTAGCCGG+CGG | - | chr5.1:49707982-49708001 | MS.gene64143:intron | 40.0% |
| !!! | GAAACGGTGGTTTTGTTATC+TGG | - | chr5.1:49709006-49709025 | MS.gene64143:intron | 40.0% |
| !!! | GGTGCTGTTTTATCAGCAAT+TGG | - | chr5.1:49709632-49709651 | MS.gene64143:intron | 40.0% |
| !!! | TCCCTGTTTTTGAATCTGGT+TGG | - | chr5.1:49709147-49709166 | MS.gene64143:intron | 40.0% |
| !!! | TGTGGTGGATTTTTTGGGAA+TGG | + | chr5.1:49707929-49707948 | None:intergenic | 40.0% |
| ACCACCGTTTCCTGGATAAA+CGG | + | chr5.1:49708997-49709016 | None:intergenic | 45.0% | |
| AGGGGTAAAGGGTTAAACGT+AGG | + | chr5.1:49708155-49708174 | None:intergenic | 45.0% | |
| ATCTGGGCCGAAAAAGCTTT+CGG | - | chr5.1:49709023-49709042 | MS.gene64143:intron | 45.0% | |
| CAAGCTGCTGAGATTATTGC+TGG | - | chr5.1:49709581-49709600 | MS.gene64143:intron | 45.0% | |
| GAGATGGAAGAAGCCAATGT+TGG | - | chr5.1:49709895-49709914 | MS.gene64143:CDS | 45.0% | |
| GAGGGACACAATCAACATAG+AGG | - | chr5.1:49708375-49708394 | MS.gene64143:CDS | 45.0% | |
| GCTCCAGTAACAGCAAAAAG+TGG | + | chr5.1:49709518-49709537 | None:intergenic | 45.0% | |
| GGCCAACCAGATTCAAAAAC+AGG | + | chr5.1:49709152-49709171 | None:intergenic | 45.0% | |
| GGGGTAAAGGGTTAAACGTA+GGG | + | chr5.1:49708154-49708173 | None:intergenic | 45.0% | |
| GGGTAAAGGGTTAAACGTAG+GGG | + | chr5.1:49708153-49708172 | None:intergenic | 45.0% | |
| TGTGTCCCTCTTGGTCTAAT+TGG | + | chr5.1:49708365-49708384 | None:intergenic | 45.0% | |
| TTCCCCGTTTATCCAGGAAA+CGG | - | chr5.1:49708990-49709009 | MS.gene64143:intron | 45.0% | |
| ! | AAAGCTTTCGGCCCATTTTC+AGG | - | chr5.1:49709035-49709054 | MS.gene64143:intron | 45.0% |
| ! | CAGGCTCATTAATGGGTACA+TGG | - | chr5.1:49709054-49709073 | MS.gene64143:intron | 45.0% |
| ! | GGGTGAAGGTATAGATGTAG+GGG | - | chr5.1:49708954-49708973 | MS.gene64143:intron | 45.0% |
| ! | GGGTTAAACGTAGGGGTATA+AGG | + | chr5.1:49708146-49708165 | None:intergenic | 45.0% |
| !! | TTGTCGTTCTGGAAAAGTGG+CGG | - | chr5.1:49708535-49708554 | MS.gene64143:CDS | 45.0% |
| !!! | GGATTTTTTGGGAATGGTGG+TGG | + | chr5.1:49707923-49707942 | None:intergenic | 45.0% |
| !!! | GGTGGATTTTTTGGGAATGG+TGG | + | chr5.1:49707926-49707945 | None:intergenic | 45.0% |
| !!! | TTTTTTGGGAATGGTGGTGG+TGG | + | chr5.1:49707920-49707939 | None:intergenic | 45.0% |
| CACCGTTTCCTGGATAAACG+GGG | + | chr5.1:49708995-49709014 | None:intergenic | 50.0% | |
| CCACCGTTTCCTGGATAAAC+GGG | + | chr5.1:49708996-49709015 | None:intergenic | 50.0% | |
| ! | AAGCCGAGAAGTGCAAAGAG+GGG | + | chr5.1:49708045-49708064 | None:intergenic | 50.0% |
| ! | GAAGCCGAGAAGTGCAAAGA+GGG | + | chr5.1:49708046-49708065 | None:intergenic | 50.0% |
| ! | GTGCGTTGCAGTTTGCTTTG+CGG | - | chr5.1:49708418-49708437 | MS.gene64143:CDS | 50.0% |
| !! | CAACAAACTTGCTGCCATCG+CGG | + | chr5.1:49708469-49708488 | None:intergenic | 50.0% |
| CCCGTTTATCCAGGAAACGG+TGG | - | chr5.1:49708993-49709012 | MS.gene64143:intron | 55.0% | |
| CGAACAAGATGCAACCGCGA+TGG | - | chr5.1:49708452-49708471 | MS.gene64143:CDS | 55.0% | |
| ! | AGCCGAGAAGTGCAAAGAGG+GGG | + | chr5.1:49708044-49708063 | None:intergenic | 55.0% |
| ! | GGAAGCCGAGAAGTGCAAAG+AGG | + | chr5.1:49708047-49708066 | None:intergenic | 55.0% |
| ! | TGCAGTTTGCTTTGCGGCGA+CGG | - | chr5.1:49708424-49708443 | MS.gene64143:CDS | 55.0% |
| !! | TCGTTCTGGAAAAGTGGCGG+TGG | - | chr5.1:49708538-49708557 | MS.gene64143:CDS | 55.0% |
| !! | TTTGGGAATGGTGGTGGTGG+TGG | + | chr5.1:49707917-49707936 | None:intergenic | 55.0% |
| GGCCCCCTCTTTGCACTTCT+CGG | - | chr5.1:49708039-49708058 | MS.gene64143:CDS | 60.0% | |
| TGGTGGTTGGAGCGGTGGAA+AGG | + | chr5.1:49707894-49707913 | None:intergenic | 60.0% | |
| ! | GAGAAGTGCAAAGAGGGGGC+CGG | + | chr5.1:49708040-49708059 | None:intergenic | 60.0% |
| ! | GCAGTTTGCTTTGCGGCGAC+GGG | - | chr5.1:49708425-49708444 | MS.gene64143:CDS | 60.0% |
| !! | AATGGTGGTGGTGGTGGTGG+TGG | + | chr5.1:49707911-49707930 | None:intergenic | 60.0% |
| AAGTGCAAAGAGGGGGCCGG+CGG | + | chr5.1:49708037-49708056 | None:intergenic | 65.0% | |
| GAAGTAGCCGGCGGCCCATA+CGG | - | chr5.1:49707991-49708010 | MS.gene64143:intron | 65.0% | |
| TTCTTCGCCGTATGGGCCGC+CGG | + | chr5.1:49708001-49708020 | None:intergenic | 65.0% | |
| ! | ACGGCGGGTTCTTCGCCGTA+TGG | + | chr5.1:49708009-49708028 | None:intergenic | 65.0% |
| ! | CGGCGGGTTCTTCGCCGTAT+GGG | + | chr5.1:49708008-49708027 | None:intergenic | 65.0% |
| !! | GGGAATGGTGGTGGTGGTGG+TGG | + | chr5.1:49707914-49707933 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTTGGAG+CGG | + | chr5.1:49707902-49707921 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGGTGGTGGT+TGG | + | chr5.1:49707907-49707926 | None:intergenic | 65.0% |
| GAACCCGCCGTTCAAGCCGC+CGG | - | chr5.1:49708018-49708037 | MS.gene64143:intron | 70.0% | |
| !! | GGTGGTGGTGGTTGGAGCGG+TGG | + | chr5.1:49707899-49707918 | None:intergenic | 70.0% |
| GAGGGGGCCGGCGGCTTGAA+CGG | + | chr5.1:49708028-49708047 | None:intergenic | 75.0% | |
| ! | GGGCCGGCGGCTTGAACGGC+GGG | + | chr5.1:49708024-49708043 | None:intergenic | 80.0% |
| ! | GGGGCCGGCGGCTTGAACGG+CGG | + | chr5.1:49708025-49708044 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 49707877 | 49709930 | 49707877 | ID=MS.gene64143 |
| chr5.1 | mRNA | 49707877 | 49709930 | 49707877 | ID=MS.gene64143.t1;Parent=MS.gene64143 |
| chr5.1 | exon | 49709682 | 49709930 | 49709682 | ID=MS.gene64143.t1.exon1;Parent=MS.gene64143.t1 |
| chr5.1 | CDS | 49709682 | 49709930 | 49709682 | ID=cds.MS.gene64143.t1;Parent=MS.gene64143.t1 |
| chr5.1 | exon | 49709327 | 49709390 | 49709327 | ID=MS.gene64143.t1.exon2;Parent=MS.gene64143.t1 |
| chr5.1 | CDS | 49709327 | 49709390 | 49709327 | ID=cds.MS.gene64143.t1;Parent=MS.gene64143.t1 |
| chr5.1 | exon | 49708029 | 49708801 | 49708029 | ID=MS.gene64143.t1.exon3;Parent=MS.gene64143.t1 |
| chr5.1 | CDS | 49708029 | 49708801 | 49708029 | ID=cds.MS.gene64143.t1;Parent=MS.gene64143.t1 |
| chr5.1 | exon | 49707877 | 49707951 | 49707877 | ID=MS.gene64143.t1.exon4;Parent=MS.gene64143.t1 |
| chr5.1 | CDS | 49707877 | 49707951 | 49707877 | ID=cds.MS.gene64143.t1;Parent=MS.gene64143.t1 |
| Gene Sequence |
| Protein sequence |
