AlfalfaGEDB | MS.gene64187

M. sativa cultivar XinJiangDaYe / MS.gene64187

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64187.t1	XP_003589390.1	96.2	555	19	1	1	553	1	555	4.90E-271	943.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64187.t1	Q04088	40.0	170	98	1	340	509	156	321	1.8e-16	89.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64187.t1	G7I6G4	96.2	555	19	1	1	553	1	555	3.5e-271	943.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene64187.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057174	MS.gene64187	0.84874	5.05E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64187.t1	MTR_1g023690	97.117	555	14	1	1	553	1	555	0.0	1101
MS.gene64187.t1	MTR_4g072090	49.278	485	178	18	42	504	41	479	1.28e-110	339
MS.gene64187.t1	MTR_4g072090	48.667	450	163	18	42	469	41	444	3.94e-97	302
MS.gene64187.t1	MTR_6g034945	47.964	221	94	8	301	513	74	281	4.45e-44	159
MS.gene64187.t1	MTR_2g099050	60.000	140	53	2	340	477	175	313	3.39e-41	154
MS.gene64187.t1	MTR_3g094020	54.777	157	67	2	368	521	91	246	2.72e-40	149
MS.gene64187.t1	MTR_5g075390	56.944	144	52	2	340	483	124	257	3.08e-39	147
MS.gene64187.t1	MTR_3g467120	52.486	181	78	4	340	518	138	312	4.46e-39	147
MS.gene64187.t1	MTR_2g090900	51.020	98	44	2	384	479	190	285	2.81e-18	86.7
MS.gene64187.t1	MTR_4g079500	50.000	98	45	2	384	479	193	288	2.89e-18	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64187.t1	AT4G38900	44.653	533	201	24	19	505	27	511	5.58e-100	313
MS.gene64187.t1	AT4G38900	44.653	533	201	24	19	505	27	511	5.58e-100	313
MS.gene64187.t1	AT4G38900	44.156	539	201	25	19	505	27	517	4.30e-97	306
MS.gene64187.t1	AT2G21230	41.866	461	206	15	79	510	74	501	4.99e-81	263
MS.gene64187.t1	AT2G21230	41.866	461	206	15	79	510	74	501	4.99e-81	263
MS.gene64187.t1	AT2G21230	41.113	467	207	16	79	510	74	507	1.03e-77	254
MS.gene64187.t1	AT2G21230	42.439	410	180	14	79	465	74	450	3.08e-73	241
MS.gene64187.t1	AT1G43700	47.549	204	87	6	300	483	89	292	2.88e-42	155
MS.gene64187.t1	AT2G31370	53.529	170	75	1	340	509	156	321	7.07e-41	152
MS.gene64187.t1	AT2G31370	53.529	170	75	1	340	509	156	321	1.88e-40	151

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Find 156 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTTTCTATGGAGGA+TGG	0.538942	1.3:-1525604	MS.gene64187:CDS
AAATGGTGAATTCAGCTCAC+AGG	0.605226	1.3:-1524879	MS.gene64187:CDS
AACTTACATGATAAGGGGAA+GGG	0.539958	1.3:+1525653	None:intergenic
AAGCTGTTCGGATGAGAGGA+GGG	0.607449	1.3:-1525098	MS.gene64187:CDS
AAGGATAGGGACTGTGTTGA+TGG	0.391348	1.3:-1525337	MS.gene64187:CDS
AATCACAAAAGTTCTGGTTT+TGG	0.303027	1.3:-1525838	MS.gene64187:CDS
AATGGAGATATTGCTCCCAG+TGG	0.710736	1.3:-1525055	MS.gene64187:CDS
AATTGGGGATAAGGAGATGA+TGG	0.483937	1.3:+1525769	None:intergenic
ACAAATTCCGATATCCCTAA+AGG	0.537853	1.3:+1525472	None:intergenic
ACACTCGCCTAGCAATTCAA+TGG	0.545737	1.3:-1524939	MS.gene64187:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAGACACGGAAATA+TGG	+	chr1.3:1524296-1524315	None:intergenic	30.0%
AAAGAAAGACACGGAAATAT+GGG	+	chr1.3:1524295-1524314	None:intergenic	30.0%
ACAGGAGATGAAGAAAATAA+TGG	-	chr1.3:1524196-1524215	MS.gene64187:intron	30.0%
ATAAACTGGTATTAGGGTTA+GGG	+	chr1.3:1523260-1523279	None:intergenic	30.0%
ATAGCAGCATACATGATATA+TGG	+	chr1.3:1524579-1524598	None:intergenic	30.0%
ATAGGATTCAATTGAATTGG+GGG	+	chr1.3:1523162-1523181	None:intergenic	30.0%
ATGCTGATAAAGAGATTCAT+AGG	+	chr1.3:1525473-1525492	None:intergenic	30.0%
CAGAAAAAAGTTCATGCATT+TGG	-	chr1.3:1523126-1523145	MS.gene64187:CDS	30.0%
CATAGGATTCAATTGAATTG+GGG	+	chr1.3:1523163-1523182	None:intergenic	30.0%
GCATAGGATTCAATTGAATT+GGG	+	chr1.3:1523164-1523183	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	1523099	1525980	1523099	ID=MS.gene64187
chr1.3	mRNA	1523099	1525980	1523099	ID=MS.gene64187.t1;Parent=MS.gene64187
chr1.3	exon	1524809	1525980	1524809	ID=MS.gene64187.t1.exon1;Parent=MS.gene64187.t1
chr1.3	CDS	1524809	1525980	1524809	ID=cds.MS.gene64187.t1;Parent=MS.gene64187.t1
chr1.3	exon	1524567	1524699	1524567	ID=MS.gene64187.t1.exon2;Parent=MS.gene64187.t1
chr1.3	CDS	1524567	1524699	1524567	ID=cds.MS.gene64187.t1;Parent=MS.gene64187.t1
chr1.3	exon	1524354	1524438	1524354	ID=MS.gene64187.t1.exon3;Parent=MS.gene64187.t1
chr1.3	CDS	1524354	1524438	1524354	ID=cds.MS.gene64187.t1;Parent=MS.gene64187.t1
chr1.3	exon	1523099	1523370	1523099	ID=MS.gene64187.t1.exon4;Parent=MS.gene64187.t1
chr1.3	CDS	1523099	1523370	1523099	ID=cds.MS.gene64187.t1;Parent=MS.gene64187.t1

Gene Sequence

>MS.gene64187

ATGCATGAACGAATGGAGCGTTTTGATCAGAAAAAAGTTCATGCATTTGGTTCTCCAAAACCCCCAATTCAATTGAATCCTATGCCTATTAATCAAATTAATCAAATGGGTTTTCCTGAAAATCACAAAAGTTCTGGTTTTGGTATTCCACCTTCATACCCTAACCCTAATACCAGTTTATCACCTAAACCATCATCTCCTTATCCCCAATTTATGCCTCCACAATCTCAAACTCATTCCAGGTCTTTGTCACAACCTACTTTTTTATCTATTGATTCCTTTTCTTTGCCACCATTGAGTCCTTCCCCTTCCCCTTATCATGTAAGTTCAAACCCCTTTTCGGAATCGGGTTCGAAAGATGTTTCTATGGAGGATGGCTTGGGTTTTGGTGCCCATCATGCACCTTCGCCTAACCGCGGTCATGCTGTTCAACATGGTCATTGTCTTCCGCCTCGTAAAGGGCATAGGCGGTCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTGCCTCAGCTGGTGACGTCTCAGCTGGTGAGTGTCAGTGATCGTCGGAATTTGGTTTCTGGAGGAGAGAAACCTGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACTGTGTTGATGGGTTTAGAGGAGAGAGTTTCGATGGGAGGAAAGAGAATGATGGAGCTGAAATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGCACAACATGAGTTTTTCGGGTATGGAAGATAGCAGAACCAGTGGTTCGAAGACGGTTGAAAGCAGCGATAATGAAGCTGAGAGTCGTGTAAATGTGAAAGGAATAGGTGCTAAGGGTGCGACTTCAAGCTGTTCGGATGAGAGGAGGGAAGGAGTCAAGAGGAGTTCTAATGGAGATATTGCTCCCAGTGGTCGACATAGGAGAAGTTACTCATTGGATAGTTCCATTGAAAATTTTAATATTGAAGATCATAAGCTTCCTCCTTTACAAGGTCGACCTGGTCAACACTCGCCTAGCAATTCAATGGATGGTAGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATGAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCTGCGGCTGATCCCAAGCGTGCAAAGAGGTAAGAATTGTCTGTTCATTTCCCATATTTCCGTGTCTTTCTTTTGGAAAAAACATGAAAAAGTAAAACTTTAATAATGACTTATCATAAATGTTGAATTCTCTTCTAGGATTTTGGCTAATCGTCAATCAGCTGCTCGCTCAAAGGAGCGGAAGATGAAATACATTTCTGAATTGGAGCAGAAGGTCCAAACTCTTCAGACAGAAACTACTACTTTGTCTACTCAGTTTACCAAATTACAGGTGCGTATCATCTTAGTTGAAATGATGTTCCTTTTTCTTAAGTTTGTGAATTATATTTGATTTCCATATATCATGTATGCTGCTATTAATTCATTCATTCTTTACTTTTTTATTGCACTTGTCTACAGATGGATCATCAAGAGCTTAAAAGTGAGAATAAAGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGGTATGCATGTGCTTATTCCTTTTACTTTATGTTCTAGTTAGTTGATATTTTTCCTTGCAATCTATTTTTTTGAAATTGATAATTGTGTTATTTTTTATTTTTTTTTACATAGAAATAACTTGCATATATGATCGTGCTCAAAGATATGTGATTTTCTATATTTAGATGGATTTTATGTGGAATAACACTATTTAGCATATACTGTATGACAAATTTTGGTGTTTGAATATAGTAATTCAAATTTTGGTTTTTGATCCAATCTTGTTCAATGATCTCTGCGCAACTGCACCTTTTAAATCTTCCTGCCTGACATAGTACTTTTGGTTTTTGGAACCCAAGTACCGTATTGTACTGAATCTCTTGGTTGCATGTTATAACCTCTTTAAAACTGCATATACAAACTGTTTGAATGTAATATGGTTTTAGACTTCTGTTGAATAGCAACAACAATAACCAAGCCTTAGTCTACCTTATGGGATCAACTTTATAGATCAAATGACGTCATAATTCTCCATTTTAGTATCATGTATTAAGGTCAGTGATAAACTTTACCTTCAGTGTTGTCAATCACAGCGGAAAGTAGTGGGTTGTTCCAATCCCGCTATGCTACAGTGCTATAGGGCTACTATAGCCGCTATTTGACAGGACAATATGCTAAATAGCGTATGACAGAACAATAACAAACAAAAACTATTTATTTAAATTCTGCTATGCTATAGTGTCGGTATTTGACAACATTGTTTACCTATGAATCTCTTTATCAGCATTTTTCAGCACTGGATTTCATTATCAATGCATTATACACTTTAAGTAGCATCATTCTAAGACACCAGCAACATATTTTTTGATCTTGTTTCTACATATCTTCATGCCACCACCATCCCTTCAGAAGCACTGTAATTCCTTGATTTTGTGCTGCAATTGATTATCTTCACTGAACCAAATATTTAGCTATGTATTCATTTGTGTTCTTATTTTCGCAGCTCTGAATGAGACTTTGAATGGCGAAGTCCGGCGCTTAAGACACACTGTAGCAGAACTAGGCGGAGAGTCTGCCCTCTCAGGTCTTATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGGCGCAGCATCAGCAGCCAAACCAGCTTAGAAATTTCCAGCCGCAAAACAGCGTCTCTCAGGAAGAAACACAGACTCAGTCGCAGCAGCATATTCAACGCAATCATGAATTCCAATCGAAGCATCAGAATGGCAAAACCACTGCATAA

Protein sequence

>MS.gene64187.t1

MHERMERFDQKKVHAFGSPKPPIQLNPMPINQINQMGFPENHKSSGFGIPPSYPNPNTSLSPKPSSPYPQFMPPQSQTHSRSLSQPTFLSIDSFSLPPLSPSPSPYHVSSNPFSESGSKDVSMEDGLGFGAHHAPSPNRGHAVQHGHCLPPRKGHRRSSSDSPLGISEFVNSVPQLVTSQLVSVSDRRNLVSGGEKPGYEKPIQLVLKDRDCVDGFRGESFDGRKENDGAEMDDLFSAYMNLENMHNMSFSGMEDSRTSGSKTVESSDNEAESRVNVKGIGAKGATSSCSDERREGVKRSSNGDIAPSGRHRRSYSLDSSIENFNIEDHKLPPLQGRPGQHSPSNSMDGSKTPEISMEFGNGEFSSQEMKKIMENDKLAEIAAADPKRAKRILANRQSAARSKERKMKYISELEQKVQTLQTETTTLSTQFTKLQMDHQELKSENKEYKLRLQSLEQQSQLKDALNETLNGEVRRLRHTVAELGGESALSGLMARQLAINQQMFQAQHQQPNQLRNFQPQNSVSQEETQTQSQQHIQRNHEFQSKHQNGKTTA