Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64201.t1 | XP_013466176.1 | 92 | 1081 | 87 | 0 | 1 | 1081 | 1 | 1081 | 0.00E+00 | 1589.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64201.t1 | Q0WSY2 | 43.9 | 1099 | 479 | 18 | 1 | 1078 | 1 | 982 | 2.5e-150 | 534.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64201.t1 | A0A072VFI4 | 92.0 | 1081 | 87 | 0 | 1 | 1081 | 1 | 1081 | 0.0e+00 | 1589.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051768 | MS.gene64201 | 0.811551 | 6.62E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64201.t1 | MTR_1g024095 | 98.705 | 1081 | 14 | 0 | 1 | 1081 | 1 | 1081 | 0.0 | 2185 |
MS.gene64201.t1 | MTR_1g024095 | 98.592 | 923 | 13 | 0 | 1 | 923 | 1 | 923 | 0.0 | 1852 |
MS.gene64201.t1 | MTR_3g113290 | 70.207 | 1111 | 286 | 9 | 1 | 1081 | 1 | 1096 | 0.0 | 1455 |
MS.gene64201.t1 | MTR_5g021810 | 49.412 | 510 | 222 | 7 | 1 | 503 | 1 | 481 | 2.08e-125 | 402 |
MS.gene64201.t1 | MTR_5g021810 | 37.121 | 264 | 143 | 6 | 835 | 1081 | 509 | 766 | 7.87e-35 | 144 |
MS.gene64201.t1 | MTR_5g021810 | 49.513 | 513 | 218 | 8 | 1 | 503 | 1 | 482 | 2.99e-125 | 401 |
MS.gene64201.t1 | MTR_5g021810 | 37.121 | 264 | 143 | 6 | 835 | 1081 | 510 | 767 | 7.83e-35 | 144 |
MS.gene64201.t1 | MTR_4g094848 | 36.255 | 502 | 265 | 8 | 1 | 500 | 1 | 449 | 8.64e-65 | 239 |
MS.gene64201.t1 | MTR_1g030010 | 42.918 | 233 | 108 | 2 | 67 | 299 | 136 | 343 | 6.68e-42 | 166 |
MS.gene64201.t1 | MTR_4g094848 | 37.394 | 353 | 204 | 6 | 149 | 500 | 1 | 337 | 1.55e-41 | 166 |
MS.gene64201.t1 | MTR_8g094760 | 39.216 | 306 | 146 | 7 | 1 | 299 | 1 | 273 | 6.00e-40 | 158 |
MS.gene64201.t1 | MTR_8g094760 | 41.410 | 227 | 108 | 2 | 74 | 299 | 59 | 261 | 3.35e-36 | 146 |
MS.gene64201.t1 | MTR_3g096990 | 40.708 | 226 | 111 | 3 | 74 | 299 | 55 | 257 | 2.91e-34 | 140 |
MS.gene64201.t1 | MTR_3g096990 | 40.708 | 226 | 111 | 3 | 74 | 299 | 55 | 257 | 1.02e-33 | 140 |
MS.gene64201.t1 | MTR_4g085570 | 31.507 | 365 | 227 | 8 | 142 | 500 | 86 | 433 | 2.18e-28 | 123 |
MS.gene64201.t1 | MTR_5g016830 | 32.184 | 261 | 147 | 3 | 1 | 260 | 1 | 232 | 3.07e-28 | 123 |
MS.gene64201.t1 | MTR_4g085570 | 31.507 | 365 | 227 | 8 | 142 | 500 | 86 | 433 | 3.38e-28 | 123 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64201.t1 | AT1G19835 | 51.317 | 1101 | 394 | 19 | 1 | 1078 | 1 | 982 | 0.0 | 923 |
MS.gene64201.t1 | AT1G19835 | 51.317 | 1101 | 394 | 19 | 1 | 1078 | 1 | 982 | 0.0 | 923 |
MS.gene64201.t1 | AT1G19835 | 51.317 | 1101 | 394 | 19 | 1 | 1078 | 1 | 982 | 0.0 | 923 |
MS.gene64201.t1 | AT1G19835 | 51.317 | 1101 | 394 | 19 | 1 | 1078 | 1 | 982 | 0.0 | 923 |
MS.gene64201.t1 | AT1G19835 | 51.317 | 1101 | 394 | 19 | 1 | 1078 | 1 | 982 | 0.0 | 923 |
MS.gene64201.t1 | AT1G19835 | 51.317 | 1101 | 394 | 19 | 1 | 1078 | 1 | 982 | 0.0 | 923 |
MS.gene64201.t1 | AT1G47900 | 48.951 | 1144 | 421 | 24 | 1 | 1076 | 1 | 1049 | 0.0 | 899 |
MS.gene64201.t1 | AT1G47900 | 48.866 | 1146 | 421 | 25 | 1 | 1076 | 1 | 1051 | 0.0 | 895 |
MS.gene64201.t1 | AT1G47900 | 48.866 | 1146 | 421 | 25 | 1 | 1076 | 1 | 1051 | 0.0 | 895 |
MS.gene64201.t1 | AT4G36120 | 52.767 | 506 | 217 | 5 | 3 | 498 | 4 | 497 | 1.62e-154 | 486 |
MS.gene64201.t1 | AT4G36120 | 52.767 | 506 | 217 | 5 | 3 | 498 | 4 | 497 | 1.62e-154 | 486 |
MS.gene64201.t1 | AT2G23360 | 35.893 | 521 | 248 | 13 | 1 | 515 | 1 | 441 | 2.54e-65 | 238 |
MS.gene64201.t1 | AT3G05270 | 38.538 | 301 | 138 | 8 | 1 | 299 | 1 | 256 | 1.59e-37 | 150 |
MS.gene64201.t1 | AT3G05270 | 38.538 | 301 | 138 | 8 | 1 | 299 | 1 | 256 | 1.59e-37 | 150 |
MS.gene64201.t1 | AT3G05270 | 38.538 | 301 | 138 | 8 | 1 | 299 | 1 | 256 | 1.59e-37 | 150 |
MS.gene64201.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 24 | 216 | 6.25e-34 | 139 |
MS.gene64201.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 58 | 250 | 6.29e-34 | 141 |
MS.gene64201.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 58 | 250 | 6.29e-34 | 141 |
MS.gene64201.t1 | AT1G77580 | 39.912 | 228 | 102 | 3 | 71 | 298 | 24 | 216 | 8.07e-34 | 140 |
MS.gene64201.t1 | AT1G21810 | 36.190 | 210 | 92 | 1 | 89 | 298 | 13 | 180 | 2.43e-27 | 119 |
MS.gene64201.t1 | AT1G21810 | 36.190 | 210 | 92 | 1 | 89 | 298 | 13 | 180 | 2.43e-27 | 119 |
MS.gene64201.t1 | AT2G24470 | 56.338 | 71 | 31 | 0 | 162 | 232 | 22 | 92 | 8.21e-17 | 77.0 |
MS.gene64201.t1 | AT3G19370 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.74e-15 | 82.0 |
MS.gene64201.t1 | AT3G19370 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.74e-15 | 82.0 |
MS.gene64201.t1 | AT3G19370 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.74e-15 | 82.0 |
Find 193 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAGAAATTCATTATCTTTC+TGG | 0.062149 | 1.3:+1297064 | None:intergenic |
TCAGTTCATGTTCTTCTTTC+AGG | 0.092243 | 1.3:+1297658 | None:intergenic |
TCCACCTGATCCTGCAAATT+TGG | 0.097144 | 1.3:+1294777 | None:intergenic |
TCTTGATCTGTCTCATTTCT+TGG | 0.164294 | 1.3:-1295972 | MS.gene64201:CDS |
AAGGATGATCCTGAAGATTT+TGG | 0.192360 | 1.3:-1296232 | MS.gene64201:CDS |
TTCATATGGATGGGAGATTT+TGG | 0.201783 | 1.3:+1296877 | None:intergenic |
ATTTAATATCCTTGGTTATA+AGG | 0.215009 | 1.3:-1295930 | MS.gene64201:CDS |
GTCTTATTGTTTGAAGTAAA+TGG | 0.215951 | 1.3:+1296592 | None:intergenic |
ACTTAGCAAACTTCAAATTT+TGG | 0.228892 | 1.3:-1296938 | MS.gene64201:CDS |
CAAGCAATTGGACAAGATTA+AGG | 0.237668 | 1.3:-1297607 | MS.gene64201:CDS |
CAGAAAACTCCTCCATCTTT+TGG | 0.257130 | 1.3:+1296044 | None:intergenic |
TTGCTGCATAGCCTGTATTT+TGG | 0.257557 | 1.3:+1296836 | None:intergenic |
ATTGCGAATTTCAAGCTCTT+TGG | 0.257885 | 1.3:+1297365 | None:intergenic |
TTGAAGTTTGCTAAGTGTTT+TGG | 0.260849 | 1.3:+1296945 | None:intergenic |
AATATGACTCTACAGAAATT+TGG | 0.262881 | 1.3:+1298077 | None:intergenic |
TGATACTCCATGTGATAAAA+AGG | 0.263448 | 1.3:-1296251 | MS.gene64201:CDS |
GAAAGTCTTGGCCGAGATTA+TGG | 0.264945 | 1.3:-1297177 | MS.gene64201:CDS |
TTTGGCTGTATATGCTTTCA+TGG | 0.269714 | 1.3:+1296854 | None:intergenic |
TACAAAACATATACCTGTTT+GGG | 0.302469 | 1.3:+1298637 | None:intergenic |
GCTATCAATCCCACGGGGAC+TGG | 0.303633 | 1.3:+1296441 | None:intergenic |
CTACAAAACATATACCTGTT+TGG | 0.304368 | 1.3:+1298636 | None:intergenic |
TGAGAAAGTTGCTGCTGAAT+TGG | 0.315843 | 1.3:-1298683 | MS.gene64201:CDS |
GACTTTGTAGGCTTGTGATT+TGG | 0.317402 | 1.3:+1294627 | None:intergenic |
CTAGAGGTGGAGAAATTTGC+TGG | 0.321649 | 1.3:-1296649 | MS.gene64201:CDS |
CCACCTGATCCTGCAAATTT+GGG | 0.328853 | 1.3:+1294778 | None:intergenic |
TTTAATATCCTTGGTTATAA+GGG | 0.333038 | 1.3:-1295929 | MS.gene64201:CDS |
GGCTCTGTCTAGGTCCTTGC+AGG | 0.333327 | 1.3:-1297520 | MS.gene64201:CDS |
ACTGTCAGTGTTTGAATCTA+TGG | 0.340845 | 1.3:-1296389 | MS.gene64201:CDS |
CTATCAATCCCACGGGGACT+GGG | 0.341097 | 1.3:+1296442 | None:intergenic |
AGAAAAGAATGCTGACGAAT+TGG | 0.344363 | 1.3:-1296716 | MS.gene64201:CDS |
GATGAAGAGGCTGACTTTGT+AGG | 0.345777 | 1.3:+1294615 | None:intergenic |
TAATGAAATTCAGACTAAAA+AGG | 0.347824 | 1.3:-1295059 | MS.gene64201:intron |
GAAACTGAACCAAAATCTTC+AGG | 0.348387 | 1.3:+1296223 | None:intergenic |
CCTTCTGCTGATTACTTGTC+TGG | 0.348966 | 1.3:+1296905 | None:intergenic |
GCATACACTCAGAAGGTTCT+TGG | 0.355846 | 1.3:+1296179 | None:intergenic |
CAGGAAACAATATATCTTCT+TGG | 0.355918 | 1.3:-1294903 | MS.gene64201:CDS |
ACCTCGGAGCCCAAATTTGC+AGG | 0.363025 | 1.3:-1294787 | MS.gene64201:CDS |
GAGATGGACGGAGCTAGTTT+TGG | 0.363929 | 1.3:-1294756 | MS.gene64201:CDS |
GAACATGTTTAATATCCTTC+AGG | 0.376801 | 1.3:+1296341 | None:intergenic |
CTCGGATATATCATCTTTGC+TGG | 0.377440 | 1.3:+1296531 | None:intergenic |
ATCATTACCATCTTCAGAAA+TGG | 0.383278 | 1.3:+1296804 | None:intergenic |
ATATTCACATCTGACGGGTT+TGG | 0.385175 | 1.3:-1298059 | MS.gene64201:CDS |
TGAGGACTAGAAGGTTTAAC+AGG | 0.386914 | 1.3:+1297132 | None:intergenic |
TGGATGGTGTACAGGAGATA+TGG | 0.388288 | 1.3:+1294647 | None:intergenic |
GATAAATACCAAGGAAGCTT+TGG | 0.391489 | 1.3:-1297945 | MS.gene64201:CDS |
AGCTGAAGTTAAATCACAAT+TGG | 0.392320 | 1.3:-1295588 | MS.gene64201:CDS |
CTTAATCTTGTCCAATTGCT+TGG | 0.394678 | 1.3:+1297608 | None:intergenic |
ACTGCAGCAAACTTGCTTCA+TGG | 0.399033 | 1.3:+1295999 | None:intergenic |
GAAAAGAATGCTGACGAATT+GGG | 0.401808 | 1.3:-1296715 | MS.gene64201:CDS |
ATATGCTTTCATGGTTCATA+TGG | 0.402247 | 1.3:+1296863 | None:intergenic |
ACAGAAATTTGGACATAGTT+CGG | 0.403644 | 1.3:+1298088 | None:intergenic |
GATCCCATTGGTTCTGTTTG+AGG | 0.404007 | 1.3:+1294858 | None:intergenic |
CACGACTTCGTGTTGTTCCT+TGG | 0.413839 | 1.3:-1296118 | MS.gene64201:CDS |
GAGATCTCATGAAGCAGCTT+TGG | 0.414919 | 1.3:-1295408 | MS.gene64201:CDS |
TTCATTTGTGCAAGTGCAGC+AGG | 0.425188 | 1.3:+1297210 | None:intergenic |
CTGATAATGCGGCTCTGTCT+AGG | 0.427732 | 1.3:-1297530 | MS.gene64201:CDS |
GAAACTGACTGCTGAGGATC+AGG | 0.428547 | 1.3:-1297730 | MS.gene64201:CDS |
GTTCTCCATGGAGGAATTTG+AGG | 0.432870 | 1.3:-1295711 | MS.gene64201:CDS |
TTCTCTTTCACATGATTCTA+CGG | 0.433391 | 1.3:+1297422 | None:intergenic |
TTTCTGTCTTCATTCGTAGA+TGG | 0.433666 | 1.3:+1295459 | None:intergenic |
GATGTCAAATTTCCATCATC+AGG | 0.434545 | 1.3:+1295764 | None:intergenic |
AGCTGCTAACAAACAGCATA+TGG | 0.437028 | 1.3:-1297310 | MS.gene64201:CDS |
AATCCTGAGGTTCCTGATGA+TGG | 0.437920 | 1.3:-1295776 | MS.gene64201:CDS |
AAAACGTAACAGTGAATTGC+AGG | 0.445435 | 1.3:-1296986 | MS.gene64201:CDS |
GAATTCAGATTTAATATCCT+TGG | 0.447868 | 1.3:-1295938 | MS.gene64201:CDS |
TGCATCTAATCAACCCAAAC+AGG | 0.451553 | 1.3:-1298650 | MS.gene64201:intron |
AAGTGTTTGTAAAATGCAAA+GGG | 0.452367 | 1.3:+1294706 | None:intergenic |
CGAGAAGTTGTGCCGAGTCT+TGG | 0.454331 | 1.3:-1296777 | MS.gene64201:CDS |
GCAATCTTATCTATGCAATC+AGG | 0.456472 | 1.3:+1295884 | None:intergenic |
CATACACTCAGAAGGTTCTT+GGG | 0.458195 | 1.3:+1296180 | None:intergenic |
AGAACATGAACTGAAAATAC+AGG | 0.458759 | 1.3:-1297649 | MS.gene64201:CDS |
GCTTTCATGGTTCATATGGA+TGG | 0.462160 | 1.3:+1296867 | None:intergenic |
TATCCTTGGTTATAAGGGTA+TGG | 0.463385 | 1.3:-1295924 | MS.gene64201:CDS |
AGCATATACAGCCAAAATAC+AGG | 0.468052 | 1.3:-1296847 | MS.gene64201:CDS |
AGTGAAGACATATGAAGAAA+AGG | 0.470909 | 1.3:-1298029 | MS.gene64201:CDS |
AGCCAAGAGTCTCCTGCTGC+AGG | 0.471852 | 1.3:-1296475 | MS.gene64201:CDS |
TGAAAAGTTAGCCGAGTGTC+AGG | 0.477083 | 1.3:-1294922 | MS.gene64201:CDS |
AAAGGCAGAAGCAGAAGCTT+TGG | 0.478071 | 1.3:-1297787 | MS.gene64201:CDS |
ATCCTGCAGCAGGAGACTCT+TGG | 0.481478 | 1.3:+1296473 | None:intergenic |
AAATTCTCCAGGCTGGGAAA+AGG | 0.482919 | 1.3:-1297805 | MS.gene64201:intron |
TTTCCATCATCAGGAACCTC+AGG | 0.483685 | 1.3:+1295773 | None:intergenic |
TATCAATCCCACGGGGACTG+GGG | 0.484881 | 1.3:+1296443 | None:intergenic |
AAGCAATTGGACAAGATTAA+GGG | 0.485157 | 1.3:-1297606 | MS.gene64201:CDS |
AACTTCAGCTAGAAGTTGCT+CGG | 0.486763 | 1.3:+1295601 | None:intergenic |
GAATTTCAGCTACAGAGTCT+TGG | 0.486988 | 1.3:+1296293 | None:intergenic |
ACTTTGAACAGGAACTTCTC+AGG | 0.487308 | 1.3:-1297560 | MS.gene64201:CDS |
GGGGCTGGTGATCCTGCAGC+AGG | 0.488978 | 1.3:+1296463 | None:intergenic |
GCTGCTGAATTGGACTCTGC+TGG | 0.489054 | 1.3:-1298673 | MS.gene64201:CDS |
ATGATCTCCATTTCTGAAGA+TGG | 0.489920 | 1.3:-1296811 | MS.gene64201:CDS |
GAGCCCAAATTTGCAGGATC+AGG | 0.490198 | 1.3:-1294781 | MS.gene64201:CDS |
GGAGAGAAATGAGGACTAGA+AGG | 0.495341 | 1.3:+1297123 | None:intergenic |
TTGTGATTTGGATGGTGTAC+AGG | 0.497419 | 1.3:+1294639 | None:intergenic |
ATATTCTCGAGGGAGAAATC+AGG | 0.498205 | 1.3:+1297096 | None:intergenic |
TCAGAAGCTGGCACATCGAC+GGG | 0.504799 | 1.3:+1296271 | None:intergenic |
TTCTAGTCCTCATTTCTCTC+CGG | 0.504915 | 1.3:-1297121 | MS.gene64201:CDS |
GTAGCTGAAGAGGCTGTCTC+AGG | 0.506912 | 1.3:-1297905 | MS.gene64201:intron |
TTAGTTCAAGAAAATTCGTC+GGG | 0.507234 | 1.3:-1295845 | MS.gene64201:CDS |
ATATGGATAGAAGATGGCCT+TGG | 0.509231 | 1.3:-1298735 | MS.gene64201:CDS |
AAAGTGTTTGTAAAATGCAA+AGG | 0.511679 | 1.3:+1294705 | None:intergenic |
TAGGATACGGAACTTTGAAC+AGG | 0.511809 | 1.3:-1297571 | MS.gene64201:CDS |
GGAGACTCTTGGCTTTGCAA+TGG | 0.513807 | 1.3:+1296484 | None:intergenic |
TTCACATCTGACGGGTTTGG+AGG | 0.515273 | 1.3:-1298056 | MS.gene64201:CDS |
ATCACTTGAAACACGTGCAC+AGG | 0.515281 | 1.3:-1295501 | MS.gene64201:CDS |
CACAATTGGCTTCTGCTCAA+AGG | 0.517000 | 1.3:-1295574 | MS.gene64201:CDS |
CCCAAATTTGCAGGATCAGG+TGG | 0.517045 | 1.3:-1294778 | MS.gene64201:CDS |
ATTCTTGATTGAAGATCTGC+TGG | 0.518048 | 1.3:+1296412 | None:intergenic |
CTTTCATGGTTCATATGGAT+GGG | 0.519994 | 1.3:+1296868 | None:intergenic |
AAGTTTGAGTCATTATCTGA+TGG | 0.520066 | 1.3:+1294675 | None:intergenic |
CAGCAAATTTCTCCACCTCT+AGG | 0.522984 | 1.3:+1296650 | None:intergenic |
ATCAATCCCACGGGGACTGG+GGG | 0.524378 | 1.3:+1296444 | None:intergenic |
AGAGAAAGAGAAGGCAATTG+TGG | 0.526170 | 1.3:-1295678 | MS.gene64201:CDS |
ATCGAGTTTCGCCATAATCT+CGG | 0.528105 | 1.3:+1297166 | None:intergenic |
TTGTAGGCTTGTGATTTGGA+TGG | 0.529818 | 1.3:+1294631 | None:intergenic |
AGGAACCTCAGGATTAGAGC+AGG | 0.530360 | 1.3:+1295784 | None:intergenic |
AGCTTCTTCCACTCCTACAC+CGG | 0.531327 | 1.3:-1294592 | MS.gene64201:CDS |
GGAATTTCTGTATATTCTCG+AGG | 0.533704 | 1.3:+1297085 | None:intergenic |
TGCACTTGCACAAATGAAGC+TGG | 0.533816 | 1.3:-1297205 | MS.gene64201:CDS |
TCGGGAGAGAGATATCAAAA+TGG | 0.535384 | 1.3:-1295827 | MS.gene64201:CDS |
AGATGGTATAAGCCAAAAGA+TGG | 0.536768 | 1.3:-1296056 | MS.gene64201:CDS |
ATCAGAAGCTGGCACATCGA+CGG | 0.537438 | 1.3:+1296270 | None:intergenic |
ACTGACTTCAGATACATCAT+TGG | 0.542121 | 1.3:+1296555 | None:intergenic |
AGTGGAAGAAGCTGATGAAG+AGG | 0.542780 | 1.3:+1294602 | None:intergenic |
TTTGCAGGATCAGGTGGAGA+TGG | 0.543626 | 1.3:-1294772 | MS.gene64201:CDS |
GTTCATGATATATCTTCTGA+TGG | 0.544329 | 1.3:-1296079 | MS.gene64201:CDS |
AATTAGAGGCTGAGTGTCAA+AGG | 0.544913 | 1.3:-1297266 | MS.gene64201:CDS |
AAAGGTTACGTGGTCTAGTA+CGG | 0.546735 | 1.3:-1297248 | MS.gene64201:CDS |
AAGAAAAGAACATGAGTATG+AGG | 0.546898 | 1.3:-1297341 | MS.gene64201:CDS |
GCATCCTCAAACAGAACCAA+TGG | 0.547812 | 1.3:-1294862 | MS.gene64201:CDS |
CATGCATTTGAGTTGAGTCT+CGG | 0.550144 | 1.3:+1295538 | None:intergenic |
TACAGAGCGCTTATTGACAA+TGG | 0.550529 | 1.3:-1297043 | MS.gene64201:CDS |
ATTGAGATTAGAGAAAGAGA+AGG | 0.551379 | 1.3:-1295687 | MS.gene64201:CDS |
ACATGCTAAAGTAGCTGAAG+AGG | 0.551814 | 1.3:-1297915 | MS.gene64201:CDS |
GTTAGTTCAAGAAAATTCGT+CGG | 0.552800 | 1.3:-1295846 | MS.gene64201:CDS |
CAATTCCTCAAATTCCTCCA+TGG | 0.553870 | 1.3:+1295706 | None:intergenic |
CCAGACAAGTAATCAGCAGA+AGG | 0.556259 | 1.3:-1296905 | MS.gene64201:CDS |
CTGTCATTGCTTCTCTGCCA+AGG | 0.558008 | 1.3:+1296101 | None:intergenic |
GTGATCTTGAGGCTAGGATA+CGG | 0.560014 | 1.3:-1297584 | MS.gene64201:CDS |
TTTGAGATATGGATAGAAGA+TGG | 0.560449 | 1.3:-1298741 | None:intergenic |
AAAAGAATCTGCTAAAACCT+CGG | 0.562481 | 1.3:+1294559 | None:intergenic |
AGCAGCTTTGGCAAAGTGCA+AGG | 0.562788 | 1.3:-1295396 | MS.gene64201:CDS |
GAGTCATATTCACATCTGAC+GGG | 0.567613 | 1.3:-1298064 | MS.gene64201:CDS |
GATATATCTTCTGATGGAGA+TGG | 0.568592 | 1.3:-1296073 | MS.gene64201:CDS |
TTCAGCTACAGAGTCTTGGA+TGG | 0.569854 | 1.3:+1296297 | None:intergenic |
TGTGCAAGTGCAGCAGGACC+AGG | 0.570936 | 1.3:+1297216 | None:intergenic |
TCCTGCAAATTTGGGCTCCG+AGG | 0.575513 | 1.3:+1294786 | None:intergenic |
AAGCTGGAAGTTGAAAGTCT+TGG | 0.575557 | 1.3:-1297189 | MS.gene64201:CDS |
GACTAAGAAGTTAGAACTGA+TGG | 0.576324 | 1.3:-1296680 | MS.gene64201:CDS |
TGCCACAAAAGCTCAATGAC+CGG | 0.577103 | 1.3:+1294521 | None:intergenic |
CATCCTCAAACAGAACCAAT+GGG | 0.577158 | 1.3:-1294861 | MS.gene64201:CDS |
ATATATTGTTTCCTGACACT+CGG | 0.577345 | 1.3:+1294911 | None:intergenic |
TCACATGGAGTATCAGAAGC+TGG | 0.577531 | 1.3:+1296259 | None:intergenic |
CAAGATTAAGGGTGATCTTG+AGG | 0.577662 | 1.3:-1297595 | MS.gene64201:CDS |
TTGATCATAGGAGAGAGACT+TGG | 0.578161 | 1.3:-1294955 | MS.gene64201:intron |
ATGGCTAAGGATGCTGATGT+AGG | 0.582211 | 1.3:-1296370 | MS.gene64201:CDS |
GTTTGAAGTAAATGGCAAAG+AGG | 0.583585 | 1.3:+1296600 | None:intergenic |
TGAAAAGCTATCAATCCCAC+GGG | 0.590101 | 1.3:+1296435 | None:intergenic |
CACGTCACAAAAGTTCTCCA+TGG | 0.591616 | 1.3:-1295723 | MS.gene64201:CDS |
CAGGTCTGCTGCTGATAATG+CGG | 0.592535 | 1.3:-1297541 | MS.gene64201:CDS |
CAGGATCAGGTGGAGATGGA+CGG | 0.595264 | 1.3:-1294768 | MS.gene64201:CDS |
GTGAAAAGCTATCAATCCCA+CGG | 0.595662 | 1.3:+1296434 | None:intergenic |
CATGTTAGAGCGCTCCTGCA+AGG | 0.598974 | 1.3:+1297506 | None:intergenic |
TCACTGTACATAGATCCCAT+TGG | 0.599900 | 1.3:+1294846 | None:intergenic |
TCGAGGGAGAAATCAGGCAC+CGG | 0.602488 | 1.3:+1297102 | None:intergenic |
CAATCCCTGCTCTAATCCTG+AGG | 0.602697 | 1.3:-1295789 | MS.gene64201:CDS |
TTAAGGGTGATCTTGAGGCT+AGG | 0.602821 | 1.3:-1297590 | MS.gene64201:CDS |
AGCTAGAAGAACAATTGCAA+AGG | 0.604021 | 1.3:-1295373 | MS.gene64201:intron |
TGCTAACAAACAGCATATGG+AGG | 0.605040 | 1.3:-1297307 | MS.gene64201:CDS |
CGAGACTCAACTCAAATGCA+TGG | 0.608379 | 1.3:-1295537 | MS.gene64201:CDS |
TCAGGCACCGGAGAGAAATG+AGG | 0.609792 | 1.3:+1297114 | None:intergenic |
AGAGTCATATTCACATCTGA+CGG | 0.613513 | 1.3:-1298065 | MS.gene64201:CDS |
CAGACAAGTAATCAGCAGAA+GGG | 0.615118 | 1.3:-1296904 | MS.gene64201:CDS |
GAATTTCTGTATATTCTCGA+GGG | 0.615195 | 1.3:+1297086 | None:intergenic |
AGTGTTTGAATCTATGGCTA+AGG | 0.616003 | 1.3:-1296383 | MS.gene64201:CDS |
TGACGAATTGGGCAAATCTG+AGG | 0.616648 | 1.3:-1296704 | MS.gene64201:CDS |
GATCAGGCGTCACAGTTAGA+CGG | 0.617015 | 1.3:-1297714 | MS.gene64201:CDS |
GTTATCTGCATACACTCAGA+AGG | 0.621671 | 1.3:+1296172 | None:intergenic |
TATTGCTGTCGACCAAGACT+CGG | 0.624331 | 1.3:+1296765 | None:intergenic |
GATGGATGACTTCCTAGAGG+TGG | 0.638572 | 1.3:-1296662 | MS.gene64201:CDS |
TTTCCATACCCTTATAACCA+AGG | 0.638601 | 1.3:+1295921 | None:intergenic |
TGGTATAAGCCAAAAGATGG+AGG | 0.642588 | 1.3:-1296053 | MS.gene64201:CDS |
GCTAACAAACAGCATATGGA+GGG | 0.651485 | 1.3:-1297306 | MS.gene64201:CDS |
GGAACCTCAGGATTAGAGCA+GGG | 0.651732 | 1.3:+1295785 | None:intergenic |
AGAAAAGGTTCAGACACTTG+AGG | 0.656387 | 1.3:-1298014 | MS.gene64201:CDS |
GCTTCACAGAGCATCAACCT+CGG | 0.657044 | 1.3:-1294803 | MS.gene64201:CDS |
TGATGTAGGTAAGATCCTGA+AGG | 0.658649 | 1.3:-1296356 | MS.gene64201:CDS |
AAACACAGAGATAAATACCA+AGG | 0.669689 | 1.3:-1297954 | MS.gene64201:CDS |
TCTTTCGAAACTGACTGCTG+AGG | 0.670642 | 1.3:-1297736 | MS.gene64201:CDS |
ATTATGGCGAAACTCGATTG+CGG | 0.684534 | 1.3:-1297161 | MS.gene64201:CDS |
ACTGATGGATGACTTCCTAG+AGG | 0.703699 | 1.3:-1296665 | MS.gene64201:CDS |
GCTGAGTGTCAAAGGTTACG+TGG | 0.710643 | 1.3:-1297258 | MS.gene64201:CDS |
AGTGTTTGTAAAATGCAAAG+GGG | 0.712425 | 1.3:+1294707 | None:intergenic |
GTCACAAAAGTTCTCCATGG+AGG | 0.722043 | 1.3:-1295720 | MS.gene64201:CDS |
GAAAAGCTATCAATCCCACG+GGG | 0.825805 | 1.3:+1296436 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAATTGCTAAATTAG+AGG | - | chr1.3:1295986-1296005 | MS.gene64201:CDS | 15.0% |
!! | TTCTTAGATTTCTATTTAAA+TGG | + | chr1.3:1298279-1298298 | None:intergenic | 15.0% |
!! | AAAAAAAAAAGCAAGACAAA+TGG | + | chr1.3:1295069-1295088 | None:intergenic | 20.0% |
!! | ACTTACACATTATATGATAT+TGG | + | chr1.3:1297931-1297950 | None:intergenic | 20.0% |
!! | ATTTAATATCCTTGGTTATA+AGG | - | chr1.3:1297336-1297355 | MS.gene64201:CDS | 20.0% |
!! | ATTTCATATAAGAAAATGAC+TGG | - | chr1.3:1294766-1294785 | MS.gene64201:CDS | 20.0% |
!! | TAAGAAATTCATTATCTTTC+TGG | + | chr1.3:1296205-1296224 | None:intergenic | 20.0% |
!! | TAATGAAATTCAGACTAAAA+AGG | - | chr1.3:1298207-1298226 | MS.gene64201:intron | 20.0% |
!! | TTTAATATCCTTGGTTATAA+GGG | - | chr1.3:1297337-1297356 | MS.gene64201:CDS | 20.0% |
!!! | AGATTCAAGTATTTTTCATT+TGG | - | chr1.3:1294794-1294813 | MS.gene64201:CDS | 20.0% |
!!! | GTCTTGCTTTTTTTTTTATT+CGG | - | chr1.3:1295072-1295091 | MS.gene64201:CDS | 20.0% |
!!! | TGAATTATTTTCTTGATCAT+AGG | - | chr1.3:1298299-1298318 | MS.gene64201:intron | 20.0% |
!!! | TTTTTTTTTATTCGGCAATA+TGG | - | chr1.3:1295080-1295099 | MS.gene64201:CDS | 20.0% |
! | AAGTGTTTGTAAAATGCAAA+GGG | + | chr1.3:1298563-1298582 | None:intergenic | 25.0% |
! | AATATGACTCTACAGAAATT+TGG | + | chr1.3:1295192-1295211 | None:intergenic | 25.0% |
! | ATTTGAACAGAACTTTAACT+CGG | + | chr1.3:1295445-1295464 | None:intergenic | 25.0% |
! | CAAAACTTGAAATGTTAACA+AGG | + | chr1.3:1294851-1294870 | None:intergenic | 25.0% |
! | CTAATAGACAAAGTAACAAA+AGG | + | chr1.3:1298166-1298185 | None:intergenic | 25.0% |
! | GAATTCAGATTTAATATCCT+TGG | - | chr1.3:1297328-1297347 | MS.gene64201:CDS | 25.0% |
! | TAATGTACTAATCATAAACC+CGG | + | chr1.3:1294951-1294970 | None:intergenic | 25.0% |
! | TACAAAACATATACCTGTTT+GGG | + | chr1.3:1294632-1294651 | None:intergenic | 25.0% |
! | TGATACGTTGAATTTAATCA+CGG | + | chr1.3:1294694-1294713 | None:intergenic | 25.0% |
! | TTCATAGGGTATATGTTTAT+TGG | - | chr1.3:1294742-1294761 | MS.gene64201:CDS | 25.0% |
!! | AAAGTGTTTGTAAAATGCAA+AGG | + | chr1.3:1298564-1298583 | None:intergenic | 25.0% |
!! | ACTTAGCAAACTTCAAATTT+TGG | - | chr1.3:1296328-1296347 | MS.gene64201:CDS | 25.0% |
!! | GTCTTATTGTTTGAAGTAAA+TGG | + | chr1.3:1296677-1296696 | None:intergenic | 25.0% |
!! | TTCTGCTTAATTTTTATGCA+TGG | - | chr1.3:1294825-1294844 | MS.gene64201:CDS | 25.0% |
!! | TTTTCATCAAAAGGAAAAAC+CGG | - | chr1.3:1298726-1298745 | MS.gene64201:CDS | 25.0% |
!!! | AAGTTTTGAAGAACAATTTC+TGG | - | chr1.3:1294863-1294882 | MS.gene64201:CDS | 25.0% |
!!! | CTTTTGTTACTTTGTCTATT+AGG | - | chr1.3:1298164-1298183 | MS.gene64201:intron | 25.0% |
!!! | TCTTGAACTAACTTATTTTC+AGG | + | chr1.3:1297412-1297431 | None:intergenic | 25.0% |
AAAAGAATCTGCTAAAACCT+CGG | + | chr1.3:1298710-1298729 | None:intergenic | 30.0% | |
AAACACAGAGATAAATACCA+AGG | - | chr1.3:1295312-1295331 | MS.gene64201:intron | 30.0% | |
AAAGGAAACACTATACATCA+AGG | + | chr1.3:1295414-1295433 | None:intergenic | 30.0% | |
AAGAAAAGAACATGAGTATG+AGG | - | chr1.3:1295925-1295944 | MS.gene64201:CDS | 30.0% | |
AAGCAATTGGACAAGATTAA+GGG | - | chr1.3:1295660-1295679 | MS.gene64201:CDS | 30.0% | |
AAGTTTGAGTCATTATCTGA+TGG | + | chr1.3:1298594-1298613 | None:intergenic | 30.0% | |
AATGTACTAATCATAAACCC+GGG | + | chr1.3:1294950-1294969 | None:intergenic | 30.0% | |
ACAGAAATTTGGACATAGTT+CGG | + | chr1.3:1295181-1295200 | None:intergenic | 30.0% | |
AGAACATGAACTGAAAATAC+AGG | - | chr1.3:1295617-1295636 | MS.gene64201:CDS | 30.0% | |
AGCTGAAGTTAAATCACAAT+TGG | - | chr1.3:1297678-1297697 | MS.gene64201:CDS | 30.0% | |
AGTGAAGACATATGAAGAAA+AGG | - | chr1.3:1295237-1295256 | MS.gene64201:intron | 30.0% | |
AGTGTTTGTAAAATGCAAAG+GGG | + | chr1.3:1298562-1298581 | None:intergenic | 30.0% | |
ATAGACAAAGTAACAAAAGG+AGG | + | chr1.3:1298163-1298182 | None:intergenic | 30.0% | |
ATATATTGTTTCCTGACACT+CGG | + | chr1.3:1298358-1298377 | None:intergenic | 30.0% | |
ATATGCTTTCATGGTTCATA+TGG | + | chr1.3:1296406-1296425 | None:intergenic | 30.0% | |
ATCATTACCATCTTCAGAAA+TGG | + | chr1.3:1296465-1296484 | None:intergenic | 30.0% | |
ATTATGAAGCATACTAGATG+CGG | - | chr1.3:1294967-1294986 | MS.gene64201:intron | 30.0% | |
ATTGAGATTAGAGAAAGAGA+AGG | - | chr1.3:1297579-1297598 | MS.gene64201:CDS | 30.0% | |
CAGGAAACAATATATCTTCT+TGG | - | chr1.3:1298363-1298382 | MS.gene64201:intron | 30.0% | |
CATAGTAAGTTAATGTTAGC+AGG | + | chr1.3:1298077-1298096 | None:intergenic | 30.0% | |
CTACAAAACATATACCTGTT+TGG | + | chr1.3:1294633-1294652 | None:intergenic | 30.0% | |
GAACATGTTTAATATCCTTC+AGG | + | chr1.3:1296928-1296947 | None:intergenic | 30.0% | |
GAATTTCTGTATATTCTCGA+GGG | + | chr1.3:1296183-1296202 | None:intergenic | 30.0% | |
GCTTTCTATTTGAATGGAAT+CGG | + | chr1.3:1298240-1298259 | None:intergenic | 30.0% | |
GGAGGAATTAGAAATAGAAT+TGG | + | chr1.3:1298145-1298164 | None:intergenic | 30.0% | |
GTTAGTTCAAGAAAATTCGT+CGG | - | chr1.3:1297420-1297439 | MS.gene64201:CDS | 30.0% | |
GTTCATGATATATCTTCTGA+TGG | - | chr1.3:1297187-1297206 | MS.gene64201:CDS | 30.0% | |
TAAACCCGGGATTAAAAAAA+AGG | + | chr1.3:1294937-1294956 | None:intergenic | 30.0% | |
TGATACTCCATGTGATAAAA+AGG | - | chr1.3:1297015-1297034 | MS.gene64201:CDS | 30.0% | |
TTAGATATGTGTTTGTGTGT+GGG | - | chr1.3:1294997-1295016 | MS.gene64201:intron | 30.0% | |
TTAGTTCAAGAAAATTCGTC+GGG | - | chr1.3:1297421-1297440 | MS.gene64201:CDS | 30.0% | |
TTCTCTTTCACATGATTCTA+CGG | + | chr1.3:1295847-1295866 | None:intergenic | 30.0% | |
TTGACACTTCTAATAGTGTT+CGG | - | chr1.3:1294655-1294674 | MS.gene64201:CDS | 30.0% | |
TTTAACTCGGGAAACAAAAA+AGG | + | chr1.3:1295432-1295451 | None:intergenic | 30.0% | |
TTTAGATATGTGTTTGTGTG+TGG | - | chr1.3:1294996-1295015 | MS.gene64201:intron | 30.0% | |
TTTGAACAGAACTTTAACTC+GGG | + | chr1.3:1295444-1295463 | None:intergenic | 30.0% | |
! | AGACAAATGGAGTATTAGTT+AGG | + | chr1.3:1295056-1295075 | None:intergenic | 30.0% |
! | AGCAGATTCTTTTCATCAAA+AGG | - | chr1.3:1298717-1298736 | MS.gene64201:CDS | 30.0% |
! | TTCAAATCACTCTTCTTTTC+AGG | + | chr1.3:1296761-1296780 | None:intergenic | 30.0% |
!! | AGTTTCTTACTTTTCTGCTA+TGG | - | chr1.3:1294911-1294930 | MS.gene64201:CDS | 30.0% |
!! | ATTCTTTTCTTTTGGGAGTT+GGG | + | chr1.3:1296540-1296559 | None:intergenic | 30.0% |
!!! | TATGGCCTTTTTTTTAATCC+CGG | - | chr1.3:1294929-1294948 | MS.gene64201:CDS | 30.0% |
!!! | TCAGATGATTTTTTCTTCCA+AGG | + | chr1.3:1294551-1294570 | None:intergenic | 30.0% |
!!! | TTGAAGTTTGCTAAGTGTTT+TGG | + | chr1.3:1296324-1296343 | None:intergenic | 30.0% |
AAAACGTAACAGTGAATTGC+AGG | - | chr1.3:1296280-1296299 | MS.gene64201:CDS | 35.0% | |
AAATGGAATTAAATCCAGCC+TGG | + | chr1.3:1298262-1298281 | None:intergenic | 35.0% | |
AAGTTCTGTTCAAATTCTCC+AGG | - | chr1.3:1295450-1295469 | MS.gene64201:CDS | 35.0% | |
ACTGTCAGTGTTTGAATCTA+TGG | - | chr1.3:1296877-1296896 | MS.gene64201:CDS | 35.0% | |
AGAAAAGAATGCTGACGAAT+TGG | - | chr1.3:1296550-1296569 | MS.gene64201:CDS | 35.0% | |
AGAGTCATATTCACATCTGA+CGG | - | chr1.3:1295201-1295220 | MS.gene64201:intron | 35.0% | |
AGATGGTATAAGCCAAAAGA+TGG | - | chr1.3:1297210-1297229 | MS.gene64201:CDS | 35.0% | |
AGCATATACAGCCAAAATAC+AGG | - | chr1.3:1296419-1296438 | MS.gene64201:CDS | 35.0% | |
AGCTAGAAGAACAATTGCAA+AGG | - | chr1.3:1297893-1297912 | MS.gene64201:intron | 35.0% | |
AGTGTTTGAATCTATGGCTA+AGG | - | chr1.3:1296883-1296902 | MS.gene64201:CDS | 35.0% | |
ATTCTTGATTGAAGATCTGC+TGG | + | chr1.3:1296857-1296876 | None:intergenic | 35.0% | |
ATTGCGAATTTCAAGCTCTT+TGG | + | chr1.3:1295904-1295923 | None:intergenic | 35.0% | |
CAAGCAATTGGACAAGATTA+AGG | - | chr1.3:1295659-1295678 | MS.gene64201:CDS | 35.0% | |
CACAACAGTGGAATTTATGT+TGG | - | chr1.3:1298000-1298019 | MS.gene64201:CDS | 35.0% | |
CTTAATCTTGTCCAATTGCT+TGG | + | chr1.3:1295661-1295680 | None:intergenic | 35.0% | |
CTTTCATGGTTCATATGGAT+GGG | + | chr1.3:1296401-1296420 | None:intergenic | 35.0% | |
GAAAAGAATGCTGACGAATT+GGG | - | chr1.3:1296551-1296570 | MS.gene64201:CDS | 35.0% | |
GAAACTGAACCAAAATCTTC+AGG | + | chr1.3:1297046-1297065 | None:intergenic | 35.0% | |
GACTAAGAAGTTAGAACTGA+TGG | - | chr1.3:1296586-1296605 | MS.gene64201:CDS | 35.0% | |
GATAAATACCAAGGAAGCTT+TGG | - | chr1.3:1295321-1295340 | MS.gene64201:intron | 35.0% | |
GATATATCTTCTGATGGAGA+TGG | - | chr1.3:1297193-1297212 | MS.gene64201:CDS | 35.0% | |
GATGTCAAATTTCCATCATC+AGG | + | chr1.3:1297505-1297524 | None:intergenic | 35.0% | |
GCAATCTTATCTATGCAATC+AGG | + | chr1.3:1297385-1297404 | None:intergenic | 35.0% | |
GGAATTTCTGTATATTCTCG+AGG | + | chr1.3:1296184-1296203 | None:intergenic | 35.0% | |
GGGATTTGAACTTGCATAAT+TGG | - | chr1.3:1295017-1295036 | MS.gene64201:intron | 35.0% | |
TAAATTCCACTGTTGTGAAC+AGG | + | chr1.3:1297997-1298016 | None:intergenic | 35.0% | |
TATCCTTGGTTATAAGGGTA+TGG | - | chr1.3:1297342-1297361 | MS.gene64201:CDS | 35.0% | |
TCAGTTCATGTTCTTCTTTC+AGG | + | chr1.3:1295611-1295630 | None:intergenic | 35.0% | |
TCTTGATCTGTCTCATTTCT+TGG | - | chr1.3:1297294-1297313 | MS.gene64201:CDS | 35.0% | |
TGGTTTGAGTAAGAAAACGT+AGG | - | chr1.3:1298020-1298039 | MS.gene64201:CDS | 35.0% | |
TTATGAAGCATACTAGATGC+GGG | - | chr1.3:1294968-1294987 | MS.gene64201:intron | 35.0% | |
TTCCATTCAAATAGAAAGCC+AGG | - | chr1.3:1298241-1298260 | MS.gene64201:intron | 35.0% | |
TTCTATTTGAATGGAATCGG+TGG | + | chr1.3:1298237-1298256 | None:intergenic | 35.0% | |
TTTCCATACCCTTATAACCA+AGG | + | chr1.3:1297348-1297367 | None:intergenic | 35.0% | |
TTTCTGTCTTCATTCGTAGA+TGG | + | chr1.3:1297810-1297829 | None:intergenic | 35.0% | |
TTTGGCTGTATATGCTTTCA+TGG | + | chr1.3:1296415-1296434 | None:intergenic | 35.0% | |
! | AAGGATGATCCTGAAGATTT+TGG | - | chr1.3:1297034-1297053 | MS.gene64201:CDS | 35.0% |
! | ACTGACTTCAGATACATCAT+TGG | + | chr1.3:1296714-1296733 | None:intergenic | 35.0% |
! | ATGATCTCCATTTCTGAAGA+TGG | - | chr1.3:1296455-1296474 | MS.gene64201:CDS | 35.0% |
! | CGTCAGCATTCTTTTCTTTT+GGG | + | chr1.3:1296547-1296566 | None:intergenic | 35.0% |
! | GGATCATCCTTTTTATCACA+TGG | + | chr1.3:1297025-1297044 | None:intergenic | 35.0% |
! | GTTTGAAGTAAATGGCAAAG+AGG | + | chr1.3:1296669-1296688 | None:intergenic | 35.0% |
! | TCGTCAGCATTCTTTTCTTT+TGG | + | chr1.3:1296548-1296567 | None:intergenic | 35.0% |
! | TTCATATGGATGGGAGATTT+TGG | + | chr1.3:1296392-1296411 | None:intergenic | 35.0% |
!! | CAATTGCTTGGTTTTTGCAA+GGG | + | chr1.3:1295649-1295668 | None:intergenic | 35.0% |
!! | CATTCTTTTCTTTTGGGAGT+TGG | + | chr1.3:1296541-1296560 | None:intergenic | 35.0% |
!! | CTTCAAATTTTGGAAGCACA+AGG | - | chr1.3:1296338-1296357 | MS.gene64201:CDS | 35.0% |
!! | TTGTTTTACCAAAGCTTCCT+TGG | + | chr1.3:1295332-1295351 | None:intergenic | 35.0% |
!!! | ATGGCCTTTTTTTTAATCCC+GGG | - | chr1.3:1294930-1294949 | MS.gene64201:CDS | 35.0% |
AAAGGTTACGTGGTCTAGTA+CGG | - | chr1.3:1296018-1296037 | MS.gene64201:CDS | 40.0% | |
AACTTCAGCTAGAAGTTGCT+CGG | + | chr1.3:1297668-1297687 | None:intergenic | 40.0% | |
AAGCTGGAAGTTGAAAGTCT+TGG | - | chr1.3:1296077-1296096 | MS.gene64201:CDS | 40.0% | |
AATTAGAGGCTGAGTGTCAA+AGG | - | chr1.3:1296000-1296019 | MS.gene64201:CDS | 40.0% | |
ACATGCTAAAGTAGCTGAAG+AGG | - | chr1.3:1295351-1295370 | MS.gene64201:intron | 40.0% | |
ACTTTGAACAGGAACTTCTC+AGG | - | chr1.3:1295706-1295725 | MS.gene64201:CDS | 40.0% | |
AGAAAAGGTTCAGACACTTG+AGG | - | chr1.3:1295252-1295271 | MS.gene64201:intron | 40.0% | |
AGAGAAAGAGAAGGCAATTG+TGG | - | chr1.3:1297588-1297607 | MS.gene64201:CDS | 40.0% | |
AGCTGCTAACAAACAGCATA+TGG | - | chr1.3:1295956-1295975 | MS.gene64201:CDS | 40.0% | |
ATATTCTCGAGGGAGAAATC+AGG | + | chr1.3:1296173-1296192 | None:intergenic | 40.0% | |
ATCGAGTTTCGCCATAATCT+CGG | + | chr1.3:1296103-1296122 | None:intergenic | 40.0% | |
ATTATGGCGAAACTCGATTG+CGG | - | chr1.3:1296105-1296124 | MS.gene64201:CDS | 40.0% | |
ATTCAAATAGAAAGCCAGGC+TGG | - | chr1.3:1298245-1298264 | MS.gene64201:intron | 40.0% | |
CAACGTATCAGTGTTATGTC+CGG | - | chr1.3:1294704-1294723 | MS.gene64201:CDS | 40.0% | |
CAAGATTAAGGGTGATCTTG+AGG | - | chr1.3:1295671-1295690 | MS.gene64201:CDS | 40.0% | |
CAATTCCTCAAATTCCTCCA+TGG | + | chr1.3:1297563-1297582 | None:intergenic | 40.0% | |
CAGACAAGTAATCAGCAGAA+GGG | - | chr1.3:1296362-1296381 | MS.gene64201:CDS | 40.0% | |
CATACACTCAGAAGGTTCTT+GGG | + | chr1.3:1297089-1297108 | None:intergenic | 40.0% | |
CATCCTCAAACAGAACCAAT+GGG | - | chr1.3:1298405-1298424 | MS.gene64201:intron | 40.0% | |
CCTTGCAAAAACCAAGCAAT+TGG | - | chr1.3:1295647-1295666 | MS.gene64201:CDS | 40.0% | |
CTAGTACGGAAAAAGTTACC+TGG | - | chr1.3:1296032-1296051 | MS.gene64201:CDS | 40.0% | |
CTCGGATATATCATCTTTGC+TGG | + | chr1.3:1296738-1296757 | None:intergenic | 40.0% | |
GAATTTCAGCTACAGAGTCT+TGG | + | chr1.3:1296976-1296995 | None:intergenic | 40.0% | |
GACTTTGTAGGCTTGTGATT+TGG | + | chr1.3:1298642-1298661 | None:intergenic | 40.0% | |
GAGTCATATTCACATCTGAC+GGG | - | chr1.3:1295202-1295221 | MS.gene64201:intron | 40.0% | |
GCTAACAAACAGCATATGGA+GGG | - | chr1.3:1295960-1295979 | MS.gene64201:CDS | 40.0% | |
GCTTTCATGGTTCATATGGA+TGG | + | chr1.3:1296402-1296421 | None:intergenic | 40.0% | |
GTCTGTGTCAATGCTTCATA+GGG | - | chr1.3:1294728-1294747 | MS.gene64201:CDS | 40.0% | |
GTGAAAAGCTATCAATCCCA+CGG | + | chr1.3:1296835-1296854 | None:intergenic | 40.0% | |
GTTATCTGCATACACTCAGA+AGG | + | chr1.3:1297097-1297116 | None:intergenic | 40.0% | |
TAGGATACGGAACTTTGAAC+AGG | - | chr1.3:1295695-1295714 | MS.gene64201:CDS | 40.0% | |
TCACTGTACATAGATCCCAT+TGG | + | chr1.3:1298423-1298442 | None:intergenic | 40.0% | |
TCGGGAGAGAGATATCAAAA+TGG | - | chr1.3:1297439-1297458 | MS.gene64201:CDS | 40.0% | |
TGAAAAGCTATCAATCCCAC+GGG | + | chr1.3:1296834-1296853 | None:intergenic | 40.0% | |
TGAAGAAAAAGCTCATGCTG+AGG | - | chr1.3:1295797-1295816 | MS.gene64201:CDS | 40.0% | |
TGAGAAAGTTGCTGCTGAAT+TGG | - | chr1.3:1294583-1294602 | MS.gene64201:CDS | 40.0% | |
TGAGGACTAGAAGGTTTAAC+AGG | + | chr1.3:1296137-1296156 | None:intergenic | 40.0% | |
TGATGTAGGTAAGATCCTGA+AGG | - | chr1.3:1296910-1296929 | MS.gene64201:CDS | 40.0% | |
TGCATCTAATCAACCCAAAC+AGG | - | chr1.3:1294616-1294635 | MS.gene64201:CDS | 40.0% | |
TGCTAACAAACAGCATATGG+AGG | - | chr1.3:1295959-1295978 | MS.gene64201:CDS | 40.0% | |
TGGTATAAGCCAAAAGATGG+AGG | - | chr1.3:1297213-1297232 | MS.gene64201:CDS | 40.0% | |
TGTCTGTGTCAATGCTTCAT+AGG | - | chr1.3:1294727-1294746 | MS.gene64201:CDS | 40.0% | |
TTCTAGTCCTCATTTCTCTC+CGG | - | chr1.3:1296145-1296164 | MS.gene64201:CDS | 40.0% | |
TTGATCATAGGAGAGAGACT+TGG | - | chr1.3:1298311-1298330 | MS.gene64201:intron | 40.0% | |
! | AGCCTGGCTTTCTATTTGAA+TGG | + | chr1.3:1298246-1298265 | None:intergenic | 40.0% |
! | CAGAAAACTCCTCCATCTTT+TGG | + | chr1.3:1297225-1297244 | None:intergenic | 40.0% |
! | GTACAGTGAGAAGCTTTTGA+AGG | - | chr1.3:1298434-1298453 | MS.gene64201:intron | 40.0% |
! | TACAGAGCGCTTATTGACAA+TGG | - | chr1.3:1296223-1296242 | MS.gene64201:CDS | 40.0% |
! | TTGCTGCATAGCCTGTATTT+TGG | + | chr1.3:1296433-1296452 | None:intergenic | 40.0% |
! | TTGTAGGCTTGTGATTTGGA+TGG | + | chr1.3:1298638-1298657 | None:intergenic | 40.0% |
! | TTGTGATTTGGATGGTGTAC+AGG | + | chr1.3:1298630-1298649 | None:intergenic | 40.0% |
!! | ATATTCACATCTGACGGGTT+TGG | - | chr1.3:1295207-1295226 | MS.gene64201:intron | 40.0% |
!! | ATCACTCTTCTTTTCAGGCT+CGG | + | chr1.3:1296756-1296775 | None:intergenic | 40.0% |
!! | CATGCATTTGAGTTGAGTCT+CGG | + | chr1.3:1297731-1297750 | None:intergenic | 40.0% |
!! | CCAATTGCTTGGTTTTTGCA+AGG | + | chr1.3:1295650-1295669 | None:intergenic | 40.0% |
!! | GAGAAGCTTTTGAAGGTTGA+AGG | - | chr1.3:1298441-1298460 | MS.gene64201:intron | 40.0% |
!! | TTGCTTTTGCTTATGCAAGC+AGG | - | chr1.3:1295141-1295160 | MS.gene64201:intron | 40.0% |
AAAGGCAGAAGCAGAAGCTT+TGG | - | chr1.3:1295479-1295498 | MS.gene64201:CDS | 45.0% | |
AAATTCTCCAGGCTGGGAAA+AGG | - | chr1.3:1295461-1295480 | MS.gene64201:CDS | 45.0% | |
AATCCTGAGGTTCCTGATGA+TGG | - | chr1.3:1297490-1297509 | MS.gene64201:CDS | 45.0% | |
ACTCCTACACCGGAAAAACA+TGG | - | chr1.3:1298684-1298703 | MS.gene64201:CDS | 45.0% | |
AGTGGAAGAAGCTGATGAAG+AGG | + | chr1.3:1298667-1298686 | None:intergenic | 45.0% | |
ATCACTTGAAACACGTGCAC+AGG | - | chr1.3:1297765-1297784 | MS.gene64201:CDS | 45.0% | |
ATGGCTAAGGATGCTGATGT+AGG | - | chr1.3:1296896-1296915 | MS.gene64201:CDS | 45.0% | |
CACGTCACAAAAGTTCTCCA+TGG | - | chr1.3:1297543-1297562 | MS.gene64201:CDS | 45.0% | |
CAGCAAATTTCTCCACCTCT+AGG | + | chr1.3:1296619-1296638 | None:intergenic | 45.0% | |
CATAATCCATTCCTACTCGC+AGG | - | chr1.3:1297971-1297990 | MS.gene64201:CDS | 45.0% | |
CCACCTGATCCTGCAAATTT+GGG | + | chr1.3:1298491-1298510 | None:intergenic | 45.0% | |
CCAGACAAGTAATCAGCAGA+AGG | - | chr1.3:1296361-1296380 | MS.gene64201:CDS | 45.0% | |
CGAGACTCAACTCAAATGCA+TGG | - | chr1.3:1297729-1297748 | MS.gene64201:CDS | 45.0% | |
CTAGAGGTGGAGAAATTTGC+TGG | - | chr1.3:1296617-1296636 | MS.gene64201:CDS | 45.0% | |
CTGTTCAAATTCTCCAGGCT+GGG | - | chr1.3:1295455-1295474 | MS.gene64201:CDS | 45.0% | |
GAAAAGCTATCAATCCCACG+GGG | + | chr1.3:1296833-1296852 | None:intergenic | 45.0% | |
GAAAGTCTTGGCCGAGATTA+TGG | - | chr1.3:1296089-1296108 | MS.gene64201:CDS | 45.0% | |
GAGATCTCATGAAGCAGCTT+TGG | - | chr1.3:1297858-1297877 | MS.gene64201:intron | 45.0% | |
GCATACACTCAGAAGGTTCT+TGG | + | chr1.3:1297090-1297109 | None:intergenic | 45.0% | |
GCATCCTCAAACAGAACCAA+TGG | - | chr1.3:1298404-1298423 | MS.gene64201:intron | 45.0% | |
GGAGAGAAATGAGGACTAGA+AGG | + | chr1.3:1296146-1296165 | None:intergenic | 45.0% | |
GTCACAAAAGTTCTCCATGG+AGG | - | chr1.3:1297546-1297565 | MS.gene64201:CDS | 45.0% | |
GTGATCTTGAGGCTAGGATA+CGG | - | chr1.3:1295682-1295701 | MS.gene64201:CDS | 45.0% | |
GTTCTCCATGGAGGAATTTG+AGG | - | chr1.3:1297555-1297574 | MS.gene64201:CDS | 45.0% | |
TATTGCTGTCGACCAAGACT+CGG | + | chr1.3:1296504-1296523 | None:intergenic | 45.0% | |
TCCACCTGATCCTGCAAATT+TGG | + | chr1.3:1298492-1298511 | None:intergenic | 45.0% | |
TCTGTTCAAATTCTCCAGGC+TGG | - | chr1.3:1295454-1295473 | MS.gene64201:CDS | 45.0% | |
TCTTTCGAAACTGACTGCTG+AGG | - | chr1.3:1295530-1295549 | MS.gene64201:CDS | 45.0% | |
TGAAAAGTTAGCCGAGTGTC+AGG | - | chr1.3:1298344-1298363 | MS.gene64201:intron | 45.0% | |
TGACGAATTGGGCAAATCTG+AGG | - | chr1.3:1296562-1296581 | MS.gene64201:CDS | 45.0% | |
TGCACTTGCACAAATGAAGC+TGG | - | chr1.3:1296061-1296080 | MS.gene64201:CDS | 45.0% | |
TGGATGGTGTACAGGAGATA+TGG | + | chr1.3:1298622-1298641 | None:intergenic | 45.0% | |
TTAAGGGTGATCTTGAGGCT+AGG | - | chr1.3:1295676-1295695 | MS.gene64201:CDS | 45.0% | |
TTCAGCTACAGAGTCTTGGA+TGG | + | chr1.3:1296972-1296991 | None:intergenic | 45.0% | |
TTCATTTGTGCAAGTGCAGC+AGG | + | chr1.3:1296059-1296078 | None:intergenic | 45.0% | |
TTTCCATCATCAGGAACCTC+AGG | + | chr1.3:1297496-1297515 | None:intergenic | 45.0% | |
! | AAACCTCGGCCATGTTTTTC+CGG | + | chr1.3:1298696-1298715 | None:intergenic | 45.0% |
! | ACTGATGGATGACTTCCTAG+AGG | - | chr1.3:1296601-1296620 | MS.gene64201:CDS | 45.0% |
! | ACTGCAGCAAACTTGCTTCA+TGG | + | chr1.3:1297270-1297289 | None:intergenic | 45.0% |
! | ATGTTTTTCCGGTGTAGGAG+TGG | + | chr1.3:1298685-1298704 | None:intergenic | 45.0% |
! | CACAATTGGCTTCTGCTCAA+AGG | - | chr1.3:1297692-1297711 | MS.gene64201:CDS | 45.0% |
! | CCTTCTGCTGATTACTTGTC+TGG | + | chr1.3:1296364-1296383 | None:intergenic | 45.0% |
! | GATGAAGAGGCTGACTTTGT+AGG | + | chr1.3:1298654-1298673 | None:intergenic | 45.0% |
! | TCACATGGAGTATCAGAAGC+TGG | + | chr1.3:1297010-1297029 | None:intergenic | 45.0% |
!! | GATCCCATTGGTTCTGTTTG+AGG | + | chr1.3:1298411-1298430 | None:intergenic | 45.0% |
!! | TGAAGCATTGACACAGACAC+CGG | + | chr1.3:1294726-1294745 | None:intergenic | 45.0% |
AGCTTCTTCCACTCCTACAC+CGG | - | chr1.3:1298674-1298693 | MS.gene64201:CDS | 50.0% | |
AGGAACCTCAGGATTAGAGC+AGG | + | chr1.3:1297485-1297504 | None:intergenic | 50.0% | |
ATCAGAAGCTGGCACATCGA+CGG | + | chr1.3:1296999-1297018 | None:intergenic | 50.0% | |
CAATCCCTGCTCTAATCCTG+AGG | - | chr1.3:1297477-1297496 | MS.gene64201:CDS | 50.0% | |
CCCAAATTTGCAGGATCAGG+TGG | - | chr1.3:1298488-1298507 | MS.gene64201:intron | 50.0% | |
CTGTCATTGCTTCTCTGCCA+AGG | + | chr1.3:1297168-1297187 | None:intergenic | 50.0% | |
GAAACTGACTGCTGAGGATC+AGG | - | chr1.3:1295536-1295555 | MS.gene64201:CDS | 50.0% | |
GAGCCCAAATTTGCAGGATC+AGG | - | chr1.3:1298485-1298504 | MS.gene64201:intron | 50.0% | |
GATCAGGCGTCACAGTTAGA+CGG | - | chr1.3:1295552-1295571 | MS.gene64201:CDS | 50.0% | |
GATGGATGACTTCCTAGAGG+TGG | - | chr1.3:1296604-1296623 | MS.gene64201:CDS | 50.0% | |
GCTGAGTGTCAAAGGTTACG+TGG | - | chr1.3:1296008-1296027 | MS.gene64201:CDS | 50.0% | |
GGAACCTCAGGATTAGAGCA+GGG | + | chr1.3:1297484-1297503 | None:intergenic | 50.0% | |
TTTGCAGGATCAGGTGGAGA+TGG | - | chr1.3:1298494-1298513 | MS.gene64201:intron | 50.0% | |
! | AGCAGCTTTGGCAAAGTGCA+AGG | - | chr1.3:1297870-1297889 | MS.gene64201:intron | 50.0% |
! | CACGACTTCGTGTTGTTCCT+TGG | - | chr1.3:1297148-1297167 | MS.gene64201:CDS | 50.0% |
! | CAGGTCTGCTGCTGATAATG+CGG | - | chr1.3:1295725-1295744 | MS.gene64201:CDS | 50.0% |
! | CTGATAATGCGGCTCTGTCT+AGG | - | chr1.3:1295736-1295755 | MS.gene64201:CDS | 50.0% |
! | GCTTCACAGAGCATCAACCT+CGG | - | chr1.3:1298463-1298482 | MS.gene64201:intron | 50.0% |
!! | GGAGACTCTTGGCTTTGCAA+TGG | + | chr1.3:1296785-1296804 | None:intergenic | 50.0% |
!! | TTCACATCTGACGGGTTTGG+AGG | - | chr1.3:1295210-1295229 | MS.gene64201:intron | 50.0% |
AACAGGCCTGCGAGTAGGAA+TGG | + | chr1.3:1297980-1297999 | None:intergenic | 55.0% | |
ACACCGGAAAAACATGGCCG+AGG | - | chr1.3:1298690-1298709 | MS.gene64201:CDS | 55.0% | |
ACCTCGGAGCCCAAATTTGC+AGG | - | chr1.3:1298479-1298498 | MS.gene64201:intron | 55.0% | |
ATCCTGCAGCAGGAGACTCT+TGG | + | chr1.3:1296796-1296815 | None:intergenic | 55.0% | |
CAGGATCAGGTGGAGATGGA+CGG | - | chr1.3:1298498-1298517 | MS.gene64201:intron | 55.0% | |
CGAGAAGTTGTGCCGAGTCT+TGG | - | chr1.3:1296489-1296508 | MS.gene64201:CDS | 55.0% | |
CTATCAATCCCACGGGGACT+GGG | + | chr1.3:1296827-1296846 | None:intergenic | 55.0% | |
GCTGCTGAATTGGACTCTGC+TGG | - | chr1.3:1294593-1294612 | MS.gene64201:CDS | 55.0% | |
GTAGCTGAAGAGGCTGTCTC+AGG | - | chr1.3:1295361-1295380 | MS.gene64201:intron | 55.0% | |
TATCAATCCCACGGGGACTG+GGG | + | chr1.3:1296826-1296845 | None:intergenic | 55.0% | |
TCAGAAGCTGGCACATCGAC+GGG | + | chr1.3:1296998-1297017 | None:intergenic | 55.0% | |
TCCTGCAAATTTGGGCTCCG+AGG | + | chr1.3:1298483-1298502 | None:intergenic | 55.0% | |
TCGAGGGAGAAATCAGGCAC+CGG | + | chr1.3:1296167-1296186 | None:intergenic | 55.0% | |
TTGTGAACAGGCCTGCGAGT+AGG | + | chr1.3:1297985-1298004 | None:intergenic | 55.0% | |
! | CATGTTAGAGCGCTCCTGCA+AGG | + | chr1.3:1295763-1295782 | None:intergenic | 55.0% |
! | CGGCCATGTTTTTCCGGTGT+AGG | + | chr1.3:1298690-1298709 | None:intergenic | 55.0% |
!! | TCAGGCACCGGAGAGAAATG+AGG | + | chr1.3:1296155-1296174 | None:intergenic | 55.0% |
AGCCAAGAGTCTCCTGCTGC+AGG | - | chr1.3:1296791-1296810 | MS.gene64201:CDS | 60.0% | |
ATCAATCCCACGGGGACTGG+GGG | + | chr1.3:1296825-1296844 | None:intergenic | 60.0% | |
CGCAGGCCTGTTCACAACAG+TGG | - | chr1.3:1297988-1298007 | MS.gene64201:CDS | 60.0% | |
GCTATCAATCCCACGGGGAC+TGG | + | chr1.3:1296828-1296847 | None:intergenic | 60.0% | |
GGCTCTGTCTAGGTCCTTGC+AGG | - | chr1.3:1295746-1295765 | MS.gene64201:CDS | 60.0% | |
TGTGCAAGTGCAGCAGGACC+AGG | + | chr1.3:1296053-1296072 | None:intergenic | 60.0% | |
! | GCTTCTGCCTTTTCCCAGCC+TGG | + | chr1.3:1295471-1295490 | None:intergenic | 60.0% |
! | GGGGCTGGTGATCCTGCAGC+AGG | + | chr1.3:1296806-1296825 | None:intergenic | 70.0% |
ATCCCACGGGGACTGGGGGC+TGG | + | chr1.3:1296821-1296840 | None:intergenic | 75.0% | |
CACCAGCCCCCAGTCCCCGT+GGG | - | chr1.3:1296816-1296835 | MS.gene64201:CDS | 75.0% | |
TCACCAGCCCCCAGTCCCCG+TGG | - | chr1.3:1296815-1296834 | MS.gene64201:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 1294533 | 1298755 | 1294533 | ID=MS.gene64201 |
chr1.3 | mRNA | 1294533 | 1298755 | 1294533 | ID=MS.gene64201.t1;Parent=MS.gene64201 |
chr1.3 | exon | 1298651 | 1298755 | 1298651 | ID=MS.gene64201.t1.exon1;Parent=MS.gene64201.t1 |
chr1.3 | CDS | 1298651 | 1298755 | 1298651 | ID=cds.MS.gene64201.t1;Parent=MS.gene64201.t1 |
chr1.3 | exon | 1297906 | 1298125 | 1297906 | ID=MS.gene64201.t1.exon2;Parent=MS.gene64201.t1 |
chr1.3 | CDS | 1297906 | 1298125 | 1297906 | ID=cds.MS.gene64201.t1;Parent=MS.gene64201.t1 |
chr1.3 | exon | 1295374 | 1297816 | 1295374 | ID=MS.gene64201.t1.exon3;Parent=MS.gene64201.t1 |
chr1.3 | CDS | 1295374 | 1297816 | 1295374 | ID=cds.MS.gene64201.t1;Parent=MS.gene64201.t1 |
chr1.3 | exon | 1295060 | 1295102 | 1295060 | ID=MS.gene64201.t1.exon4;Parent=MS.gene64201.t1 |
chr1.3 | CDS | 1295060 | 1295102 | 1295060 | ID=cds.MS.gene64201.t1;Parent=MS.gene64201.t1 |
chr1.3 | exon | 1294533 | 1294967 | 1294533 | ID=MS.gene64201.t1.exon5;Parent=MS.gene64201.t1 |
chr1.3 | CDS | 1294533 | 1294967 | 1294533 | ID=cds.MS.gene64201.t1;Parent=MS.gene64201.t1 |
Gene Sequence |
Protein sequence |