Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64245.t1 | XP_024631004.1 | 93.2 | 841 | 50 | 3 | 1 | 840 | 1 | 835 | 0.00E+00 | 1549.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64245.t1 | P19515 | 29.5 | 200 | 117 | 8 | 580 | 772 | 155 | 337 | 1.2e-14 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64245.t1 | A0A396JKE1 | 93.4 | 838 | 48 | 3 | 1 | 837 | 1 | 832 | 0.0e+00 | 1546.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene64245 | 0.819986 | 8.71E-53 | -1.69E-46 |
| MS.gene050508 | MS.gene64245 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene051926 | MS.gene64245 | -0.815201 | 1.04E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene64245 | 0.842241 | 2.92E-58 | -1.69E-46 |
| MS.gene055701 | MS.gene64245 | 0.818351 | 2.05E-52 | -1.69E-46 |
| MS.gene05595 | MS.gene64245 | 0.823663 | 1.23E-53 | -1.69E-46 |
| MS.gene057156 | MS.gene64245 | -0.803467 | 3.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64245.t1 | MTR_1g045930 | 95.943 | 838 | 27 | 3 | 1 | 837 | 1 | 832 | 0.0 | 1654 |
| MS.gene64245.t1 | MTR_2g020020 | 28.415 | 183 | 117 | 3 | 568 | 750 | 74 | 242 | 1.45e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64245.t1 | AT4G13550 | 55.958 | 856 | 339 | 11 | 2 | 842 | 1 | 833 | 0.0 | 916 |
| MS.gene64245.t1 | AT4G13550 | 55.326 | 873 | 349 | 12 | 2 | 856 | 1 | 850 | 0.0 | 915 |
| MS.gene64245.t1 | AT4G13550 | 56.996 | 779 | 309 | 8 | 95 | 856 | 49 | 818 | 0.0 | 855 |
| MS.gene64245.t1 | AT5G18640 | 33.766 | 154 | 85 | 4 | 594 | 745 | 100 | 238 | 9.40e-18 | 85.1 |
| MS.gene64245.t1 | AT5G18640 | 33.766 | 154 | 85 | 4 | 594 | 745 | 100 | 238 | 1.59e-17 | 85.9 |
| MS.gene64245.t1 | AT5G18640 | 33.766 | 154 | 85 | 4 | 594 | 745 | 100 | 238 | 1.59e-17 | 85.9 |
| MS.gene64245.t1 | AT5G18640 | 34.194 | 155 | 83 | 5 | 594 | 745 | 112 | 250 | 2.43e-17 | 85.5 |
| MS.gene64245.t1 | AT5G18640 | 34.194 | 155 | 83 | 5 | 594 | 745 | 112 | 250 | 2.43e-17 | 85.5 |
| MS.gene64245.t1 | AT5G18630 | 28.877 | 187 | 110 | 4 | 564 | 745 | 70 | 238 | 1.36e-15 | 79.0 |
| MS.gene64245.t1 | AT5G18630 | 31.847 | 157 | 84 | 4 | 594 | 745 | 100 | 238 | 2.81e-15 | 79.0 |
| MS.gene64245.t1 | AT5G18630 | 31.847 | 157 | 84 | 4 | 594 | 745 | 101 | 239 | 3.02e-15 | 79.0 |
| MS.gene64245.t1 | AT2G30550 | 30.233 | 301 | 138 | 16 | 563 | 802 | 191 | 480 | 8.17e-14 | 75.5 |
| MS.gene64245.t1 | AT2G30550 | 34.123 | 211 | 103 | 11 | 563 | 748 | 191 | 390 | 4.62e-13 | 72.8 |
| MS.gene64245.t1 | AT1G30370 | 32.558 | 172 | 92 | 6 | 590 | 748 | 235 | 395 | 1.52e-12 | 71.6 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGAAAATAAAGATATTT+TGG | 0.112258 | 1.3:-27568301 | MS.gene64245:intron |
| AAATCTCCACCTATCCTTTC+AGG | 0.153955 | 1.3:+27577260 | None:intergenic |
| ACGCCTTTCATCTTTCATTT+TGG | 0.161400 | 1.3:+27579265 | None:intergenic |
| TCCGATATTTCTGAGCTTTC+AGG | 0.174629 | 1.3:+27579422 | None:intergenic |
| AACCTTGCTGTTATTCTTGC+TGG | 0.218001 | 1.3:-27584437 | MS.gene64245:CDS |
| ACCTACAATACCCCGGTTAA+TGG | 0.230357 | 1.3:-27569816 | MS.gene64245:CDS |
| CTGGAGTTCCTAAACAAAAT+TGG | 0.233638 | 1.3:-27579500 | MS.gene64245:CDS |
| AAAGATAGAAACCGAAATTT+TGG | 0.239191 | 1.3:+27584590 | None:intergenic |
| AAATGGCATATTTATGTTAC+TGG | 0.266430 | 1.3:-27576316 | MS.gene64245:CDS |
| AAGTCTCCTACCCCAGAAAA+TGG | 0.303438 | 1.3:-27579167 | MS.gene64245:CDS |
| TTCACTAGAAGCTTCATTAG+AGG | 0.305353 | 1.3:+27579715 | None:intergenic |
| CAGGTTCACAGTGGCTTTCT+CGG | 0.308374 | 1.3:-27577125 | MS.gene64245:CDS |
| AGAACTTTCAGGTTGCAATT+TGG | 0.310411 | 1.3:-27578844 | MS.gene64245:intron |
| CGAATGCATATTCTACAAAT+TGG | 0.312700 | 1.3:+27579849 | None:intergenic |
| TTATGTTACTGGTCATAGTT+TGG | 0.318254 | 1.3:-27576305 | MS.gene64245:CDS |
| AATTGAGGGCGCGTGGAGTT+TGG | 0.323887 | 1.3:+27584647 | None:intergenic |
| GGGGAATGCAGTCGTTGATT+TGG | 0.326384 | 1.3:-27580740 | MS.gene64245:CDS |
| CATGACAATAACCCATTAAC+CGG | 0.341967 | 1.3:+27569804 | None:intergenic |
| TCCTTCGGTAGAATCTTCTT+TGG | 0.346239 | 1.3:+27579223 | None:intergenic |
| TGTGACAGTGAAACTGAAAA+TGG | 0.346310 | 1.3:-27579665 | MS.gene64245:CDS |
| GTTACGAAGGTGATGTTCTT+GGG | 0.347906 | 1.3:-27568272 | MS.gene64245:CDS |
| GAAGATATTTATATTGAATC+TGG | 0.349953 | 1.3:-27579455 | MS.gene64245:CDS |
| TGGGTAGTGGTGGAGAGGTT+TGG | 0.353635 | 1.3:-27580452 | MS.gene64245:CDS |
| ATCTGTTGTTCGTCGAAAAC+CGG | 0.363603 | 1.3:-27584518 | MS.gene64245:CDS |
| AAATATGATATTGAAAGCTC+TGG | 0.368892 | 1.3:-27579770 | MS.gene64245:CDS |
| GGACCAGTGGAATATGTTCC+AGG | 0.369117 | 1.3:-27566327 | MS.gene64245:CDS |
| CCCATTAACCGGGGTATTGT+AGG | 0.371130 | 1.3:+27569815 | None:intergenic |
| TATGTTACTGGTCATAGTTT+GGG | 0.373760 | 1.3:-27576304 | MS.gene64245:CDS |
| CCTACAATACCCCGGTTAAT+GGG | 0.375088 | 1.3:-27569815 | MS.gene64245:CDS |
| TGGATCCATGGCGGGGAAGC+TGG | 0.375629 | 1.3:+27582551 | None:intergenic |
| CCATCCCACTTTAATTTCTC+AGG | 0.375798 | 1.3:+27579524 | None:intergenic |
| AAGATGCACATAATCTTTAC+TGG | 0.377389 | 1.3:-27566690 | MS.gene64245:CDS |
| TCTGCACTCAGAAAGGTTAC+TGG | 0.380475 | 1.3:-27579893 | MS.gene64245:CDS |
| CTGATTGTTCCGTTGAATCT+TGG | 0.384022 | 1.3:+27584566 | None:intergenic |
| GGTTACGAAGGTGATGTTCT+TGG | 0.384990 | 1.3:-27568273 | MS.gene64245:CDS |
| GGGAAATCAAATAATAATAC+TGG | 0.388233 | 1.3:-27579749 | MS.gene64245:CDS |
| CTGCTAAAAGCAATATCAAA+TGG | 0.388724 | 1.3:-27582298 | MS.gene64245:CDS |
| GCCTGAAAGCTCAGAAATAT+CGG | 0.388795 | 1.3:-27579423 | MS.gene64245:CDS |
| AACTGAAAATGGACACGCTT+TGG | 0.389290 | 1.3:-27579654 | MS.gene64245:CDS |
| AACAAAGGCAGCTGCTCCCC+TGG | 0.401097 | 1.3:+27566309 | None:intergenic |
| ATTCTACAAATTGGCTGACT+TGG | 0.407387 | 1.3:+27579858 | None:intergenic |
| TGCATTTCGCGGAACAGAAC+AGG | 0.408862 | 1.3:-27578792 | MS.gene64245:intron |
| GAAGTACGTTACATACAAAC+TGG | 0.410232 | 1.3:-27566724 | MS.gene64245:CDS |
| TCTCTGATTCGACTTGCAAT+TGG | 0.411515 | 1.3:-27577071 | MS.gene64245:CDS |
| AACTCAGACTTGATGAAACT+TGG | 0.412460 | 1.3:+27579041 | None:intergenic |
| ACTCCCGCAGCAAGAAATAA+AGG | 0.417461 | 1.3:+27569773 | None:intergenic |
| GCTTCCCCGCCATGGATCCA+TGG | 0.420753 | 1.3:-27582548 | MS.gene64245:CDS |
| TGCTAAAAGCAATATCAAAT+GGG | 0.421313 | 1.3:-27582297 | MS.gene64245:CDS |
| TATATATTAGGTTGCAGCTT+GGG | 0.425739 | 1.3:-27580794 | MS.gene64245:intron |
| TAGTGGTGGAGAGGTTTGGC+TGG | 0.427191 | 1.3:-27580448 | MS.gene64245:CDS |
| CAATTTGTAGAATATGCATT+CGG | 0.427224 | 1.3:-27579848 | MS.gene64245:CDS |
| TAACATGTTTCAGGAAAACT+TGG | 0.427724 | 1.3:-27583031 | MS.gene64245:intron |
| TAACATAAATATGCCATTTG+TGG | 0.431363 | 1.3:+27576320 | None:intergenic |
| ACTGGTGGAGTTGGAAGGAA+TGG | 0.433714 | 1.3:-27580472 | MS.gene64245:CDS |
| CCCAGAAAATGGATCATTGT+TGG | 0.435596 | 1.3:-27579156 | MS.gene64245:CDS |
| ATCACATTACTAGAGGTATA+TGG | 0.445678 | 1.3:-27567623 | MS.gene64245:intron |
| CATTCCCCATGCGTTTGTGA+GGG | 0.448852 | 1.3:+27580755 | None:intergenic |
| TATCCAGATGAAGGGTGAAA+TGG | 0.451496 | 1.3:-27567741 | MS.gene64245:intron |
| GTTGCCCATCATAAATTTCA+CGG | 0.459115 | 1.3:+27582598 | None:intergenic |
| CTGAAAGTGCCATGGAGGCT+TGG | 0.460334 | 1.3:-27579091 | MS.gene64245:CDS |
| CTTTGATTCTGCACTCAGAA+AGG | 0.462977 | 1.3:-27579900 | MS.gene64245:CDS |
| AGGAGATATGCATGAAATAC+TGG | 0.466451 | 1.3:-27580490 | MS.gene64245:CDS |
| TTCATCATCAATTTCTTCAA+AGG | 0.468717 | 1.3:+27579973 | None:intergenic |
| TTTGGTGGAAAATTATATTG+AGG | 0.473510 | 1.3:+27584608 | None:intergenic |
| GTGGAAAATTATATTGAGGC+GGG | 0.474104 | 1.3:+27584612 | None:intergenic |
| AAGTGCTTACATGCAGCATA+TGG | 0.481981 | 1.3:-27567660 | MS.gene64245:CDS |
| GCACATAATCTTTACTGGTA+TGG | 0.489641 | 1.3:-27566685 | MS.gene64245:intron |
| AACTCGTTGACTATGACATC+TGG | 0.490407 | 1.3:+27568240 | None:intergenic |
| TCCGTATGTGGTCCTACAGA+TGG | 0.493689 | 1.3:-27582330 | MS.gene64245:CDS |
| CAACCTTTATTTCTTGCTGC+GGG | 0.494358 | 1.3:-27569776 | MS.gene64245:CDS |
| TGCGTTTGTGAGGGGTTACA+AGG | 0.495980 | 1.3:+27580764 | None:intergenic |
| ATGCAGTCGTTGATTTGGAA+TGG | 0.498501 | 1.3:-27580735 | MS.gene64245:CDS |
| GAAATTAAAGTGGGATGGAC+TGG | 0.499170 | 1.3:-27579519 | MS.gene64245:CDS |
| GAGTTGGAAGGAATGGGTAG+TGG | 0.504826 | 1.3:-27580465 | MS.gene64245:CDS |
| CCAACCCATGGATCCATGGC+GGG | 0.507394 | 1.3:+27582543 | None:intergenic |
| GCATGAAATACTGGTGGAGT+TGG | 0.507896 | 1.3:-27580481 | MS.gene64245:CDS |
| GGCGTGATTCTGCACGAAGA+AGG | 0.508396 | 1.3:-27578823 | MS.gene64245:CDS |
| AATGTCACAGCCTACTCCTT+CGG | 0.509094 | 1.3:+27579208 | None:intergenic |
| CTTCCCCGCCATGGATCCAT+GGG | 0.509676 | 1.3:-27582547 | MS.gene64245:intron |
| TCATAGTTTGGGTGGTGCAT+TGG | 0.512489 | 1.3:-27576293 | MS.gene64245:CDS |
| TACATACAAACTGGAAGATA+CGG | 0.513457 | 1.3:-27566715 | MS.gene64245:CDS |
| CTCAGAAAGATAGATTGTCT+TGG | 0.515701 | 1.3:+27582981 | None:intergenic |
| TCATGCTTCTTAACCTGTAG+AGG | 0.516054 | 1.3:+27581786 | None:intergenic |
| TGGTGGAGAGGTTTGGCTGG+AGG | 0.518588 | 1.3:-27580445 | MS.gene64245:intron |
| TCGGTGCATATGATTCAGTA+AGG | 0.521878 | 1.3:-27577106 | MS.gene64245:CDS |
| CATTATCAGTATCAGACATC+CGG | 0.523680 | 1.3:+27579795 | None:intergenic |
| ACAGCAAGGTTGATATCAAA+CGG | 0.527792 | 1.3:+27584449 | None:intergenic |
| ATTCTGAGTTCATCCACAAA+TGG | 0.529548 | 1.3:-27576333 | MS.gene64245:CDS |
| GATCTAATGCTTGTTCCAGC+CGG | 0.532979 | 1.3:-27578659 | MS.gene64245:CDS |
| TCCCCTGGAACATATTCCAC+TGG | 0.533969 | 1.3:+27566324 | None:intergenic |
| CTGGTGGAGTTGGAAGGAAT+GGG | 0.535044 | 1.3:-27580471 | MS.gene64245:CDS |
| AGGATCCAGCTTCCCCGCCA+TGG | 0.535297 | 1.3:-27582556 | MS.gene64245:CDS |
| CGCGTGGAGTTTGGAGAGTG+TGG | 0.535370 | 1.3:+27584656 | None:intergenic |
| ATCTAATGCTTGTTCCAGCC+GGG | 0.535771 | 1.3:-27578658 | MS.gene64245:intron |
| AGGCGTGAAGTCGATGCTGC+TGG | 0.536960 | 1.3:-27583006 | MS.gene64245:CDS |
| TGCAGAAAGTGAAAGATAGC+TGG | 0.537699 | 1.3:-27569865 | MS.gene64245:intron |
| GCATTCCCCATGCGTTTGTG+AGG | 0.540231 | 1.3:+27580754 | None:intergenic |
| AGAAATGAATGTTACCCGGC+TGG | 0.540515 | 1.3:+27578644 | None:intergenic |
| TGAAAGTTCAAGAGCAAGCA+AGG | 0.541093 | 1.3:+27576267 | None:intergenic |
| GTACACGGACCTCATCTGTC+TGG | 0.543144 | 1.3:+27566752 | None:intergenic |
| GGGAAAGTGCGAGAAAATTG+AGG | 0.543885 | 1.3:+27584632 | None:intergenic |
| ATCAGAAGAAGAAGAAAGCA+AGG | 0.543924 | 1.3:-27584548 | MS.gene64245:CDS |
| GCTGGCGAATTGTGAATCAC+AGG | 0.546360 | 1.3:-27569847 | MS.gene64245:CDS |
| CTATCTTTACCAAGATTCAA+CGG | 0.546581 | 1.3:-27584575 | MS.gene64245:CDS |
| GGAAAGTGCGAGAAAATTGA+GGG | 0.547750 | 1.3:+27584633 | None:intergenic |
| TGAAGACTGAATTGCAGCAA+TGG | 0.547909 | 1.3:+27579376 | None:intergenic |
| TTCAACTGCTGAAAGTGCCA+TGG | 0.548621 | 1.3:-27579099 | MS.gene64245:CDS |
| ACAATGCTGGCCACTTCACT+AGG | 0.554026 | 1.3:-27579068 | MS.gene64245:CDS |
| AATATGATATTGAAAGCTCT+GGG | 0.554154 | 1.3:-27579769 | MS.gene64245:CDS |
| CCGTATGTGGTCCTACAGAT+GGG | 0.554287 | 1.3:-27582329 | MS.gene64245:CDS |
| CAGCATTGTCCAAGCCTCCA+TGG | 0.555309 | 1.3:+27579082 | None:intergenic |
| GTATATATTAGGTTGCAGCT+TGG | 0.558618 | 1.3:-27580795 | MS.gene64245:intron |
| CCCATCTGTAGGACCACATA+CGG | 0.559591 | 1.3:+27582329 | None:intergenic |
| TTGGAAGGAATGGGTAGTGG+TGG | 0.560825 | 1.3:-27580462 | MS.gene64245:CDS |
| AGGAATGGGTAGTGGTGGAG+AGG | 0.561118 | 1.3:-27580457 | MS.gene64245:CDS |
| CATGGAGGCTTGGACAATGC+TGG | 0.561250 | 1.3:-27579081 | MS.gene64245:CDS |
| TGTAACCCCTCACAAACGCA+TGG | 0.561799 | 1.3:-27580761 | MS.gene64245:CDS |
| TAATGCATCCACTGATACAC+AGG | 0.563445 | 1.3:-27578997 | MS.gene64245:intron |
| GTAACCCCTCACAAACGCAT+GGG | 0.565128 | 1.3:-27580760 | MS.gene64245:CDS |
| CTATTACATCACATTACTAG+AGG | 0.566256 | 1.3:-27567630 | MS.gene64245:CDS |
| AAAAGAGCCAACATGGAATG+AGG | 0.569478 | 1.3:-27581844 | MS.gene64245:CDS |
| GCAGGACAAAAGAGCCAACA+TGG | 0.570719 | 1.3:-27581851 | MS.gene64245:intron |
| ATTTGCAGAGGTTTACAATG+AGG | 0.573302 | 1.3:-27574574 | MS.gene64245:intron |
| ACAACCAACCCATGGATCCA+TGG | 0.576145 | 1.3:+27582539 | None:intergenic |
| CCTGAGAAATTAAAGTGGGA+TGG | 0.577884 | 1.3:-27579524 | MS.gene64245:CDS |
| AATTTGTAGAATATGCATTC+GGG | 0.578887 | 1.3:-27579847 | MS.gene64245:CDS |
| TTTCCAAAATGAAAGATGAA+AGG | 0.579507 | 1.3:-27579268 | MS.gene64245:CDS |
| AGGTTAGTGATTGCATTTCG+CGG | 0.580731 | 1.3:-27578803 | MS.gene64245:CDS |
| GAAATACTGGTGGAGTTGGA+AGG | 0.584587 | 1.3:-27580477 | MS.gene64245:CDS |
| CACTTCCATCTCTGATTGAG+CGG | 0.584595 | 1.3:+27567678 | None:intergenic |
| GACCAGTGGAATATGTTCCA+GGG | 0.586649 | 1.3:-27566326 | MS.gene64245:CDS |
| ACCAAAGAAGATTCTACCGA+AGG | 0.588304 | 1.3:-27579224 | MS.gene64245:CDS |
| GGTGGAAAATTATATTGAGG+CGG | 0.588882 | 1.3:+27584611 | None:intergenic |
| ATATTCCGCTCAATCAGAGA+TGG | 0.589383 | 1.3:-27567683 | MS.gene64245:CDS |
| AGGTGGAGATTTCAAGCAAG+AGG | 0.590239 | 1.3:-27577249 | MS.gene64245:CDS |
| TGGTAACAAAAGATTTGCAG+AGG | 0.591510 | 1.3:-27574586 | MS.gene64245:CDS |
| GTTACTGGTCATAGTTTGGG+TGG | 0.592963 | 1.3:-27576301 | MS.gene64245:CDS |
| ACAAAACACCTGTGTATCAG+TGG | 0.594569 | 1.3:+27578989 | None:intergenic |
| AGAAAATGGATCATTGTTGG+AGG | 0.594821 | 1.3:-27579153 | MS.gene64245:CDS |
| GTCGGCGATGAAACCTCTAC+AGG | 0.596911 | 1.3:-27581799 | MS.gene64245:intron |
| CTGTTCCTGAGAAATTAAAG+TGG | 0.597016 | 1.3:-27579529 | MS.gene64245:CDS |
| GCTAAAAGCAATATCAAATG+GGG | 0.600045 | 1.3:-27582296 | MS.gene64245:CDS |
| GAAGATTCTACCGAAGGAGT+AGG | 0.601158 | 1.3:-27579218 | MS.gene64245:CDS |
| GTGAACTCCTCATTCCATGT+TGG | 0.601907 | 1.3:+27581837 | None:intergenic |
| GACTGAATTGCAGCAATGGA+AGG | 0.602286 | 1.3:+27579380 | None:intergenic |
| ATTCCCCATGCGTTTGTGAG+GGG | 0.602441 | 1.3:+27580756 | None:intergenic |
| GATTTGGAATGGCTTTGTGA+TGG | 0.603127 | 1.3:-27580724 | MS.gene64245:intron |
| CTGAATCCTGAAAGGATAGG+TGG | 0.603273 | 1.3:-27577266 | MS.gene64245:CDS |
| GGGAACAAGTGATCCGTATG+TGG | 0.604184 | 1.3:-27582342 | MS.gene64245:CDS |
| AGCATCACCACAAGCTAGTG+AGG | 0.604248 | 1.3:-27579630 | MS.gene64245:CDS |
| AACTCTTCCTCACTAGCTTG+TGG | 0.607610 | 1.3:+27579623 | None:intergenic |
| GCGAGAAAATTGAGGGCGCG+TGG | 0.608201 | 1.3:+27584640 | None:intergenic |
| TCAACCTTTATTTCTTGCTG+CGG | 0.608618 | 1.3:-27569777 | MS.gene64245:CDS |
| AATTCAGTCTTCACTTCCAG+AGG | 0.612033 | 1.3:-27579366 | MS.gene64245:CDS |
| TCCATAGGCTGAATCCTGAA+AGG | 0.612958 | 1.3:-27577274 | MS.gene64245:intron |
| ATGACAATAACCCATTAACC+GGG | 0.615546 | 1.3:+27569805 | None:intergenic |
| CTTTGATCTATCCAGATGAA+GGG | 0.618511 | 1.3:-27567749 | MS.gene64245:intron |
| CATATGATTCAGTAAGGACA+AGG | 0.620989 | 1.3:-27577100 | MS.gene64245:CDS |
| TGCTTACATGCAGCATATGG+AGG | 0.621537 | 1.3:-27567657 | MS.gene64245:CDS |
| TGTTTCAGGAAAACTTGGGT+AGG | 0.622383 | 1.3:-27583026 | MS.gene64245:intron |
| AACTGCTGAAAGTGCCATGG+AGG | 0.622432 | 1.3:-27579096 | MS.gene64245:CDS |
| TGAAATTAGAAAATCAACAA+AGG | 0.623104 | 1.3:+27566294 | None:intergenic |
| TGTTCCTGAGAAATTAAAGT+GGG | 0.623964 | 1.3:-27579528 | MS.gene64245:CDS |
| CAACCCATGGATCCATGGCG+GGG | 0.628494 | 1.3:+27582544 | None:intergenic |
| AACGTACTTCTATTTGTACA+CGG | 0.628938 | 1.3:+27566737 | None:intergenic |
| CAGTCTGAGAACCCATCTGT+AGG | 0.630166 | 1.3:+27582318 | None:intergenic |
| TTACGAAGGTGATGTTCTTG+GGG | 0.631176 | 1.3:-27568271 | MS.gene64245:CDS |
| GCTGCAAGGCCAGACAGATG+AGG | 0.632938 | 1.3:-27566761 | MS.gene64245:intron |
| CTGGCGAATTGTGAATCACA+GGG | 0.633195 | 1.3:-27569846 | MS.gene64245:CDS |
| AAAGGCGTTCTTCTGAAGAG+AGG | 0.635261 | 1.3:-27579250 | MS.gene64245:CDS |
| AGATATGCATGAAATACTGG+TGG | 0.638904 | 1.3:-27580487 | MS.gene64245:CDS |
| ACCAGTGGAATATGTTCCAG+GGG | 0.642751 | 1.3:-27566325 | MS.gene64245:CDS |
| AACATGTTTCAGGAAAACTT+GGG | 0.647967 | 1.3:-27583030 | MS.gene64245:intron |
| ATATCGGACAATAAAACAAG+TGG | 0.651446 | 1.3:-27579407 | MS.gene64245:CDS |
| TTCTAGTGAACAAAGAAACA+TGG | 0.651902 | 1.3:-27579702 | MS.gene64245:CDS |
| AGGCTGAATCCTGAAAGGAT+AGG | 0.652181 | 1.3:-27577269 | MS.gene64245:CDS |
| AGATCTTTGCAGGTTCACAG+TGG | 0.653410 | 1.3:-27577134 | MS.gene64245:intron |
| TAACCCCTCACAAACGCATG+GGG | 0.661460 | 1.3:-27580759 | MS.gene64245:CDS |
| GTTGACTATGACATCTGGTG+TGG | 0.664313 | 1.3:+27568245 | None:intergenic |
| GCAATGGAAGGACTTAGTAA+CGG | 0.676596 | 1.3:-27578681 | MS.gene64245:CDS |
| AACCAGCAAGAATAACAGCA+AGG | 0.677243 | 1.3:+27584435 | None:intergenic |
| CTAAAAGCAATATCAAATGG+GGG | 0.678228 | 1.3:-27582295 | MS.gene64245:intron |
| ACCAACCCATGGATCCATGG+CGG | 0.678787 | 1.3:+27582542 | None:intergenic |
| ACTTGGATGACCTAGTGAAG+TGG | 0.714926 | 1.3:+27579058 | None:intergenic |
| ATATCATACCTACAATACCC+CGG | 0.723074 | 1.3:-27569823 | MS.gene64245:CDS |
| TGACAATAACCCATTAACCG+GGG | 0.739534 | 1.3:+27569806 | None:intergenic |
| GCAAGGTTGATATCAAACGG+AGG | 0.753938 | 1.3:+27584452 | None:intergenic |
| AGTGTGGAGAGAGAACGTAA+CGG | 0.764752 | 1.3:+27584672 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 27566299 | 27584714 | 27566299 | ID=MS.gene64245 |
| chr1.3 | mRNA | 27566299 | 27584714 | 27566299 | ID=MS.gene64245.t1;Parent=MS.gene64245 |
| chr1.3 | exon | 27584406 | 27584714 | 27584406 | ID=MS.gene64245.t1.exon1;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27584406 | 27584714 | 27584406 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27582982 | 27583040 | 27582982 | ID=MS.gene64245.t1.exon2;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27582982 | 27583040 | 27582982 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27582548 | 27582629 | 27582548 | ID=MS.gene64245.t1.exon3;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27582548 | 27582629 | 27582548 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27582296 | 27582363 | 27582296 | ID=MS.gene64245.t1.exon4;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27582296 | 27582363 | 27582296 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27581800 | 27581869 | 27581800 | ID=MS.gene64245.t1.exon5;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27581800 | 27581869 | 27581800 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27580725 | 27580806 | 27580725 | ID=MS.gene64245.t1.exon6;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27580725 | 27580806 | 27580725 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27580446 | 27580510 | 27580446 | ID=MS.gene64245.t1.exon7;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27580446 | 27580510 | 27580446 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27578998 | 27580008 | 27578998 | ID=MS.gene64245.t1.exon8;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27578998 | 27580008 | 27578998 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27578793 | 27578855 | 27578793 | ID=MS.gene64245.t1.exon9;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27578793 | 27578855 | 27578793 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27578659 | 27578705 | 27578659 | ID=MS.gene64245.t1.exon10;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27578659 | 27578705 | 27578659 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27577244 | 27577289 | 27577244 | ID=MS.gene64245.t1.exon11;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27577244 | 27577289 | 27577244 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27577065 | 27577144 | 27577065 | ID=MS.gene64245.t1.exon12;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27577065 | 27577144 | 27577065 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27576250 | 27576363 | 27576250 | ID=MS.gene64245.t1.exon13;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27576250 | 27576363 | 27576250 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27574575 | 27574656 | 27574575 | ID=MS.gene64245.t1.exon14;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27574575 | 27574656 | 27574575 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27569757 | 27569882 | 27569757 | ID=MS.gene64245.t1.exon15;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27569757 | 27569882 | 27569757 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27568239 | 27568319 | 27568239 | ID=MS.gene64245.t1.exon16;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27568239 | 27568319 | 27568239 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27567624 | 27567756 | 27567624 | ID=MS.gene64245.t1.exon17;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27567624 | 27567756 | 27567624 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27566686 | 27566775 | 27566686 | ID=MS.gene64245.t1.exon18;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27566686 | 27566775 | 27566686 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| chr1.3 | exon | 27566299 | 27566348 | 27566299 | ID=MS.gene64245.t1.exon19;Parent=MS.gene64245.t1 |
| chr1.3 | CDS | 27566299 | 27566348 | 27566299 | ID=cds.MS.gene64245.t1;Parent=MS.gene64245.t1 |
| Gene Sequence |
| Protein sequence |
