Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64450.t1 | XP_013441671.1 | 96.6 | 206 | 7 | 0 | 1 | 206 | 1 | 206 | 5.10E-112 | 413.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64450.t1 | Q9ZUF7 | 56.0 | 200 | 76 | 3 | 7 | 206 | 4 | 191 | 1.3e-60 | 234.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64450.t1 | G7IGE6 | 96.6 | 206 | 7 | 0 | 1 | 206 | 1 | 206 | 3.6e-112 | 413.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057371 | MS.gene64450 | 0.848253 | 6.89E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64450.t1 | MTR_0650s0010 | 96.602 | 206 | 7 | 0 | 1 | 206 | 1 | 206 | 3.61e-148 | 410 |
| MS.gene64450.t1 | MTR_4g010180 | 30.144 | 209 | 129 | 7 | 1 | 205 | 1 | 196 | 1.46e-22 | 90.9 |
| MS.gene64450.t1 | MTR_2g103850 | 29.703 | 202 | 125 | 7 | 7 | 204 | 19 | 207 | 1.08e-16 | 75.9 |
| MS.gene64450.t1 | MTR_7g072120 | 28.342 | 187 | 123 | 5 | 12 | 197 | 28 | 204 | 1.92e-16 | 74.7 |
| MS.gene64450.t1 | MTR_2g103840 | 30.726 | 179 | 107 | 7 | 30 | 204 | 41 | 206 | 5.10e-16 | 73.9 |
| MS.gene64450.t1 | MTR_7g072140 | 27.638 | 199 | 127 | 7 | 5 | 199 | 21 | 206 | 4.13e-15 | 71.2 |
| MS.gene64450.t1 | MTR_7g072170 | 26.633 | 199 | 135 | 5 | 5 | 202 | 21 | 209 | 1.11e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64450.t1 | AT2G05910 | 56.000 | 200 | 76 | 3 | 7 | 206 | 4 | 191 | 1.42e-76 | 228 |
| MS.gene64450.t1 | AT5G20640 | 50.000 | 208 | 98 | 4 | 4 | 206 | 9 | 215 | 9.28e-69 | 209 |
| MS.gene64450.t1 | AT3G15810 | 28.358 | 201 | 125 | 7 | 7 | 203 | 20 | 205 | 4.06e-17 | 77.0 |
| MS.gene64450.t1 | AT1G80120 | 26.471 | 204 | 128 | 8 | 7 | 203 | 6 | 194 | 1.13e-11 | 62.0 |
Find 49 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACACTTGACTACATTTA+TGG | 0.127172 | 2.4:-48253370 | MS.gene64450:CDS |
| AGGCTGGGACTTTGAGATTA+GGG | 0.292979 | 2.4:-48254352 | MS.gene64450:CDS |
| ACAATGCTGCAATGCTTGTC+AGG | 0.358681 | 2.4:+48254321 | None:intergenic |
| TTAACCAAACATGAATTTCC+AGG | 0.375687 | 2.4:+48254423 | None:intergenic |
| TGGTTAAGAACAAAGGAATC+AGG | 0.379875 | 2.4:-48254407 | MS.gene64450:CDS |
| ATATCATGTAGTTGTGAAAC+CGG | 0.408825 | 2.4:-48253425 | MS.gene64450:CDS |
| AGAACCTGGAAATTCATGTT+TGG | 0.410797 | 2.4:-48254427 | MS.gene64450:CDS |
| AAGGCTGGGACTTTGAGATT+AGG | 0.425248 | 2.4:-48254353 | MS.gene64450:CDS |
| TTCGTCGTCGCAGACGGTGT+TGG | 0.426654 | 2.4:-48255023 | MS.gene64450:CDS |
| TCGTCGTCGCAGACGGTGTT+GGG | 0.426913 | 2.4:-48255022 | MS.gene64450:CDS |
| CGGTGTTGGGTGTGAGGAAA+AGG | 0.429005 | 2.4:-48255009 | MS.gene64450:CDS |
| GTTGATGGTTGTGGAATTCA+TGG | 0.436790 | 2.4:-48254920 | MS.gene64450:CDS |
| TTGGATTAATTAGCAATATG+TGG | 0.437205 | 2.4:+48253342 | None:intergenic |
| TAAAGAAGTGGAGAAATTGA+TGG | 0.444445 | 2.4:-48253461 | MS.gene64450:CDS |
| GAAGAGTTGATTCTAAGAGA+TGG | 0.449712 | 2.4:-48254890 | MS.gene64450:CDS |
| ATCAGGATTGCAATTGAGCC+AGG | 0.456564 | 2.4:-48254390 | MS.gene64450:CDS |
| GGGCTGTTAGTAACAAAGGC+TGG | 0.459412 | 2.4:-48254368 | MS.gene64450:CDS |
| TTTGCTTCTCATGCGTAGAA+AGG | 0.475993 | 2.4:-48254855 | MS.gene64450:intron |
| CTCTAAGCATTTATAAGAAG+TGG | 0.485897 | 2.4:-48254503 | MS.gene64450:CDS |
| TGAAAATGTGCAGGGAGGTA+TGG | 0.497953 | 2.4:-48254532 | MS.gene64450:intron |
| GGTTATAGTGTAAACTATGA+AGG | 0.510131 | 2.4:-48254477 | MS.gene64450:CDS |
| CACTGATTGTAGGACTCAAA+AGG | 0.512818 | 2.4:-48254954 | MS.gene64450:CDS |
| CTATTGTTCGTCGTCGCAGA+CGG | 0.514860 | 2.4:-48255029 | MS.gene64450:CDS |
| CCTTTGTTACTAACAGCCCC+TGG | 0.527858 | 2.4:+48254372 | None:intergenic |
| GGCTGTTAGTAACAAAGGCT+GGG | 0.537091 | 2.4:-48254367 | MS.gene64450:CDS |
| CAATAGAGTTTACTAACGAT+TGG | 0.539463 | 2.4:+48255046 | None:intergenic |
| CGCAGACGGTGTTGGGTGTG+AGG | 0.540715 | 2.4:-48255015 | MS.gene64450:CDS |
| AGCATTTATAAGAAGTGGAA+AGG | 0.545640 | 2.4:-48254498 | MS.gene64450:CDS |
| TCATGTTTGGTTAAGAACAA+AGG | 0.548192 | 2.4:-48254414 | MS.gene64450:CDS |
| TATCATGTAGTTGTGAAACC+GGG | 0.550855 | 2.4:-48253424 | MS.gene64450:CDS |
| CCACATGTAGTGAGTGGTGG+TGG | 0.563567 | 2.4:-48254986 | MS.gene64450:CDS |
| GTATTCAGCTTAAAAGAACC+TGG | 0.563706 | 2.4:-48254441 | MS.gene64450:CDS |
| TGTAGTTGTGAAACCGGGGA+TGG | 0.571453 | 2.4:-48253419 | MS.gene64450:CDS |
| CCAGGGGCTGTTAGTAACAA+AGG | 0.575524 | 2.4:-48254372 | MS.gene64450:CDS |
| GGCTGGGACTTTGAGATTAG+GGG | 0.576442 | 2.4:-48254351 | MS.gene64450:CDS |
| ACAAAAGCTTGATCCATCCC+CGG | 0.577739 | 2.4:+48253406 | None:intergenic |
| GGAGAAATTGATGGAAAACA+AGG | 0.580675 | 2.4:-48253452 | MS.gene64450:CDS |
| TAGAGGCAACATAGTAGCAC+AGG | 0.581579 | 2.4:-48254292 | MS.gene64450:intron |
| TGCAGCATTGTTGATACTAG+AGG | 0.590465 | 2.4:-48254309 | MS.gene64450:CDS |
| CAATGCTGCAATGCTTGTCA+GGG | 0.592241 | 2.4:+48254322 | None:intergenic |
| GGTTGGGATAAATAAAGAAG+TGG | 0.595544 | 2.4:-48253473 | MS.gene64450:CDS |
| TCAGGATTGCAATTGAGCCA+GGG | 0.612778 | 2.4:-48254389 | MS.gene64450:CDS |
| CAGGATTGCAATTGAGCCAG+GGG | 0.617829 | 2.4:-48254388 | MS.gene64450:CDS |
| CCACCACCACTCACTACATG+TGG | 0.632877 | 2.4:+48254986 | None:intergenic |
| TGTGCAGGGAGGTATGGTTG+AGG | 0.645663 | 2.4:-48254526 | MS.gene64450:intron |
| AAAAGGCCACATGTAGTGAG+TGG | 0.660839 | 2.4:-48254992 | MS.gene64450:CDS |
| TTGATGGTTGTGGAATTCAT+GGG | 0.667824 | 2.4:-48254919 | MS.gene64450:CDS |
| ATCATGTAGTTGTGAAACCG+GGG | 0.679432 | 2.4:-48253423 | MS.gene64450:CDS |
| AGGCCACATGTAGTGAGTGG+TGG | 0.689979 | 2.4:-48254989 | MS.gene64450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATACACATAAATAT+TGG | + | chr2.4:48254149-48254168 | None:intergenic | 10.0% |
| !! | TGTATATTAGTAAAAAATTA+CGG | + | chr2.4:48254237-48254256 | None:intergenic | 10.0% |
| !! | TTATTATACACATAAATATT+GGG | + | chr2.4:48254148-48254167 | None:intergenic | 10.0% |
| !!! | TTTATAAGTAATTAGATTTT+TGG | - | chr2.4:48254443-48254462 | MS.gene64450:CDS | 10.0% |
| !!! | AAAATTACACATTTTCAAAT+GGG | + | chr2.4:48254197-48254216 | None:intergenic | 15.0% |
| !!! | TTTCATTTTATATTGTGTAT+AGG | - | chr2.4:48253663-48253682 | MS.gene64450:intron | 15.0% |
| !! | AAAAGTAGAAACTCATATAT+TGG | - | chr2.4:48254802-48254821 | MS.gene64450:intron | 20.0% |
| !! | AAAGAATCAAAAGAGATATA+AGG | + | chr2.4:48253824-48253843 | None:intergenic | 20.0% |
| !!! | CAAAATTACACATTTTCAAA+TGG | + | chr2.4:48254198-48254217 | None:intergenic | 20.0% |
| !!! | CTACTTTTAATTAAACTTAG+TGG | + | chr2.4:48254790-48254809 | None:intergenic | 20.0% |
| !!! | GTTAGAAATCAATTCATTTT+CGG | + | chr2.4:48254739-48254758 | None:intergenic | 20.0% |
| !!! | TATGTTTTATCTTGATAGAA+TGG | + | chr2.4:48254876-48254895 | None:intergenic | 20.0% |
| ! | ATGAAAACTTCAAAGTGATA+TGG | + | chr2.4:48253649-48253668 | None:intergenic | 25.0% |
| ! | TAGAATGGCTTAACTATATA+TGG | + | chr2.4:48254861-48254880 | None:intergenic | 25.0% |
| ! | TGGAAAAAAACAACAAAAGT+TGG | + | chr2.4:48254770-48254789 | None:intergenic | 25.0% |
| !! | TTGTTGATTAATGTGTATAC+AGG | - | chr2.4:48254918-48254937 | MS.gene64450:CDS | 25.0% |
| !!! | AATAATTTTTTTAGGCGAGT+TGG | - | chr2.4:48254615-48254634 | MS.gene64450:intron | 25.0% |
| !!! | ATAATTTTTTTAGGCGAGTT+GGG | - | chr2.4:48254616-48254635 | MS.gene64450:intron | 25.0% |
| !!! | ATTTCATTTTGAAAATGTGC+AGG | - | chr2.4:48253871-48253890 | MS.gene64450:intron | 25.0% |
| !!! | TTTCATTTTGAAAATGTGCA+GGG | - | chr2.4:48253872-48253891 | MS.gene64450:intron | 25.0% |
| AATTACGGTCAAAGTAAGTT+AGG | + | chr2.4:48254222-48254241 | None:intergenic | 30.0% | |
| ACAAACGAACCATATTTGTA+GGG | + | chr2.4:48254490-48254509 | None:intergenic | 30.0% | |
| AGCATTTATAAGAAGTGGAA+AGG | - | chr2.4:48253914-48253933 | MS.gene64450:intron | 30.0% | |
| ATATCATGTAGTTGTGAAAC+CGG | - | chr2.4:48254987-48255006 | MS.gene64450:CDS | 30.0% | |
| ATTGAGTATCCCTACAAATA+TGG | - | chr2.4:48254478-48254497 | MS.gene64450:CDS | 30.0% | |
| CAAAACATTGAGATATGTTC+TGG | + | chr2.4:48254660-48254679 | None:intergenic | 30.0% | |
| CAATAGAGTTTACTAACGAT+TGG | + | chr2.4:48253369-48253388 | None:intergenic | 30.0% | |
| CTCTAAGCATTTATAAGAAG+TGG | - | chr2.4:48253909-48253928 | MS.gene64450:intron | 30.0% | |
| CTGATTATGAGACTAATATG+TGG | - | chr2.4:48254511-48254530 | MS.gene64450:CDS | 30.0% | |
| GATTAATGTGTATACAGGTT+GGG | - | chr2.4:48254923-48254942 | MS.gene64450:CDS | 30.0% | |
| GGTTATAGTGTAAACTATGA+AGG | - | chr2.4:48253935-48253954 | MS.gene64450:intron | 30.0% | |
| TAAAGAAGTGGAGAAATTGA+TGG | - | chr2.4:48254951-48254970 | MS.gene64450:CDS | 30.0% | |
| TCAACTGTGTCAAGAATTAT+GGG | - | chr2.4:48254395-48254414 | MS.gene64450:CDS | 30.0% | |
| TCATGTTTGGTTAAGAACAA+AGG | - | chr2.4:48253998-48254017 | MS.gene64450:intron | 30.0% | |
| TGATTAATGTGTATACAGGT+TGG | - | chr2.4:48254922-48254941 | MS.gene64450:CDS | 30.0% | |
| TTAACCAAACATGAATTTCC+AGG | + | chr2.4:48253992-48254011 | None:intergenic | 30.0% | |
| ! | ATAGGTATTGTTTGTTCGAA+GGG | - | chr2.4:48253681-48253700 | MS.gene64450:intron | 30.0% |
| ! | TATAGGTATTGTTTGTTCGA+AGG | - | chr2.4:48253680-48253699 | MS.gene64450:intron | 30.0% |
| ! | TGAATTGATTTCTAACCAAC+TGG | - | chr2.4:48254743-48254762 | MS.gene64450:intron | 30.0% |
| !!! | ATGGATCAAGCTTTTGTTTT+TGG | - | chr2.4:48255012-48255031 | MS.gene64450:CDS | 30.0% |
| !!! | GATATGCCATTTTGCAAAAA+GGG | - | chr2.4:48254835-48254854 | MS.gene64450:intron | 30.0% |
| !!! | TGATATGCCATTTTGCAAAA+AGG | - | chr2.4:48254834-48254853 | MS.gene64450:intron | 30.0% |
| AGAACCTGGAAATTCATGTT+TGG | - | chr2.4:48253985-48254004 | MS.gene64450:intron | 35.0% | |
| CACAAACGAACCATATTTGT+AGG | + | chr2.4:48254491-48254510 | None:intergenic | 35.0% | |
| GCTACACTTGACTACATTTA+TGG | - | chr2.4:48255042-48255061 | MS.gene64450:CDS | 35.0% | |
| GGAGAAATTGATGGAAAACA+AGG | - | chr2.4:48254960-48254979 | MS.gene64450:CDS | 35.0% | |
| GGTTGGGATAAATAAAGAAG+TGG | - | chr2.4:48254939-48254958 | MS.gene64450:CDS | 35.0% | |
| GTATTCAGCTTAAAAGAACC+TGG | - | chr2.4:48253971-48253990 | MS.gene64450:intron | 35.0% | |
| GTCAACTGTGTCAAGAATTA+TGG | - | chr2.4:48254394-48254413 | MS.gene64450:CDS | 35.0% | |
| TATCATGTAGTTGTGAAACC+GGG | - | chr2.4:48254988-48255007 | MS.gene64450:CDS | 35.0% | |
| TGGTTAAGAACAAAGGAATC+AGG | - | chr2.4:48254005-48254024 | MS.gene64450:intron | 35.0% | |
| ! | AACTAACCAGGTTCTAATGT+TGG | - | chr2.4:48254687-48254706 | MS.gene64450:intron | 35.0% |
| ! | ATAAAGACTTGTTCGTGCTT+TGG | + | chr2.4:48254555-48254574 | None:intergenic | 35.0% |
| ! | ATATGGCCCTTTTTGCAAAA+TGG | + | chr2.4:48254844-48254863 | None:intergenic | 35.0% |
| ! | GAAGAGTTGATTCTAAGAGA+TGG | - | chr2.4:48253522-48253541 | MS.gene64450:intron | 35.0% |
| ! | TTGATGGTTGTGGAATTCAT+GGG | - | chr2.4:48253493-48253512 | MS.gene64450:intron | 35.0% |
| !! | AAGGTTGTTTTCAAGGTTGA+TGG | - | chr2.4:48253477-48253496 | MS.gene64450:intron | 35.0% |
| !! | GACTCAAAAGGTTGTTTTCA+AGG | - | chr2.4:48253470-48253489 | MS.gene64450:CDS | 35.0% |
| !! | GTTTTGTAGTCACTGATTGT+AGG | - | chr2.4:48253448-48253467 | MS.gene64450:CDS | 35.0% |
| !! | TTTTGAGAGTTCAACTAACC+AGG | - | chr2.4:48254675-48254694 | MS.gene64450:intron | 35.0% |
| ATCATGTAGTTGTGAAACCG+GGG | - | chr2.4:48254989-48255008 | MS.gene64450:CDS | 40.0% | |
| CTGTGTCAAGAATTATGGGA+CGG | - | chr2.4:48254399-48254418 | MS.gene64450:CDS | 40.0% | |
| TGAGACTAATATGTGGTCGA+CGG | - | chr2.4:48254518-48254537 | MS.gene64450:CDS | 40.0% | |
| TGCAGCATTGTTGATACTAG+AGG | - | chr2.4:48254103-48254122 | MS.gene64450:intron | 40.0% | |
| TTCAAATGGGTCATCTATCG+CGG | + | chr2.4:48254184-48254203 | None:intergenic | 40.0% | |
| TTTGCTTCTCATGCGTAGAA+AGG | - | chr2.4:48253557-48253576 | MS.gene64450:intron | 40.0% | |
| ! | ACAACAAAAGTTGGTCCAGT+TGG | + | chr2.4:48254761-48254780 | None:intergenic | 40.0% |
| ! | CACTGATTGTAGGACTCAAA+AGG | - | chr2.4:48253458-48253477 | MS.gene64450:CDS | 40.0% |
| !! | CAGGTTCTAATGTTGGTAGT+GGG | - | chr2.4:48254694-48254713 | MS.gene64450:intron | 40.0% |
| !! | CATTTTGAAAATGTGCAGGG+AGG | - | chr2.4:48253875-48253894 | MS.gene64450:intron | 40.0% |
| !! | GTTGATGGTTGTGGAATTCA+TGG | - | chr2.4:48253492-48253511 | MS.gene64450:intron | 40.0% |
| !!! | GTTTTCAAGGTTGATGGTTG+TGG | - | chr2.4:48253483-48253502 | MS.gene64450:intron | 40.0% |
| AAAAGGCCACATGTAGTGAG+TGG | - | chr2.4:48253420-48253439 | MS.gene64450:CDS | 45.0% | |
| ACAAAAGCTTGATCCATCCC+CGG | + | chr2.4:48255009-48255028 | None:intergenic | 45.0% | |
| ACAATGCTGCAATGCTTGTC+AGG | + | chr2.4:48254094-48254113 | None:intergenic | 45.0% | |
| ATCAGGATTGCAATTGAGCC+AGG | - | chr2.4:48254022-48254041 | MS.gene64450:intron | 45.0% | |
| CAATGCTGCAATGCTTGTCA+GGG | + | chr2.4:48254093-48254112 | None:intergenic | 45.0% | |
| CCACTACCAACATTAGAACC+TGG | + | chr2.4:48254696-48254715 | None:intergenic | 45.0% | |
| GGCTGTTAGTAACAAAGGCT+GGG | - | chr2.4:48254045-48254064 | MS.gene64450:intron | 45.0% | |
| GTCAAGAATTATGGGACGGA+GGG | - | chr2.4:48254403-48254422 | MS.gene64450:CDS | 45.0% | |
| TAGAGGCAACATAGTAGCAC+AGG | - | chr2.4:48254120-48254139 | MS.gene64450:intron | 45.0% | |
| TCAAATGGGTCATCTATCGC+GGG | + | chr2.4:48254183-48254202 | None:intergenic | 45.0% | |
| TCAGGATTGCAATTGAGCCA+GGG | - | chr2.4:48254023-48254042 | MS.gene64450:intron | 45.0% | |
| TGAAAATGTGCAGGGAGGTA+TGG | - | chr2.4:48253880-48253899 | MS.gene64450:intron | 45.0% | |
| TGTCAAGAATTATGGGACGG+AGG | - | chr2.4:48254402-48254421 | MS.gene64450:CDS | 45.0% | |
| TTGTTCGTGCTTTGGTTAGG+AGG | + | chr2.4:48254547-48254566 | None:intergenic | 45.0% | |
| ! | CCAGGTTCTAATGTTGGTAG+TGG | - | chr2.4:48254693-48254712 | MS.gene64450:intron | 45.0% |
| ! | GACTTGTTCGTGCTTTGGTT+AGG | + | chr2.4:48254550-48254569 | None:intergenic | 45.0% |
| !! | AAGGCTGGGACTTTGAGATT+AGG | - | chr2.4:48254059-48254078 | MS.gene64450:intron | 45.0% |
| !! | AGGCTGGGACTTTGAGATTA+GGG | - | chr2.4:48254060-48254079 | MS.gene64450:intron | 45.0% |
| !!! | ATTTTGATAATAATTTTTTT+AGG | - | chr2.4:48254607-48254626 | MS.gene64450:intron | 5.0% |
| CAGGATTGCAATTGAGCCAG+GGG | - | chr2.4:48254024-48254043 | MS.gene64450:intron | 50.0% | |
| CCAGGGGCTGTTAGTAACAA+AGG | - | chr2.4:48254040-48254059 | MS.gene64450:intron | 50.0% | |
| CCTTTGTTACTAACAGCCCC+TGG | + | chr2.4:48254043-48254062 | None:intergenic | 50.0% | |
| CTATTGTTCGTCGTCGCAGA+CGG | - | chr2.4:48253383-48253402 | MS.gene64450:CDS | 50.0% | |
| GGGCTGTTAGTAACAAAGGC+TGG | - | chr2.4:48254044-48254063 | MS.gene64450:intron | 50.0% | |
| TGTAGTTGTGAAACCGGGGA+TGG | - | chr2.4:48254993-48255012 | MS.gene64450:CDS | 50.0% | |
| ! | TTTAGGCGAGTTGGGTCTTG+AGG | - | chr2.4:48254624-48254643 | MS.gene64450:intron | 50.0% |
| !! | GGCTGGGACTTTGAGATTAG+GGG | - | chr2.4:48254061-48254080 | MS.gene64450:intron | 50.0% |
| AGGCCACATGTAGTGAGTGG+TGG | - | chr2.4:48253423-48253442 | MS.gene64450:CDS | 55.0% | |
| ATGGGTCATCTATCGCGGGA+AGG | + | chr2.4:48254179-48254198 | None:intergenic | 55.0% | |
| CCACATGTAGTGAGTGGTGG+TGG | - | chr2.4:48253426-48253445 | MS.gene64450:CDS | 55.0% | |
| CCACCACCACTCACTACATG+TGG | + | chr2.4:48253429-48253448 | None:intergenic | 55.0% | |
| GTCATCTATCGCGGGAAGGA+GGG | + | chr2.4:48254175-48254194 | None:intergenic | 55.0% | |
| ! | CGGTGTTGGGTGTGAGGAAA+AGG | - | chr2.4:48253403-48253422 | MS.gene64450:CDS | 55.0% |
| ! | TGTGCAGGGAGGTATGGTTG+AGG | - | chr2.4:48253886-48253905 | MS.gene64450:intron | 55.0% |
| GGTCATCTATCGCGGGAAGG+AGG | + | chr2.4:48254176-48254195 | None:intergenic | 60.0% | |
| TCGTCGTCGCAGACGGTGTT+GGG | - | chr2.4:48253390-48253409 | MS.gene64450:CDS | 60.0% | |
| TTCGTCGTCGCAGACGGTGT+TGG | - | chr2.4:48253389-48253408 | MS.gene64450:CDS | 60.0% | |
| ! | CGCAGACGGTGTTGGGTGTG+AGG | - | chr2.4:48253397-48253416 | MS.gene64450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 48253351 | 48255083 | 48253351 | ID=MS.gene64450 |
| chr2.4 | mRNA | 48253351 | 48255083 | 48253351 | ID=MS.gene64450.t1;Parent=MS.gene64450 |
| chr2.4 | exon | 48254856 | 48255083 | 48254856 | ID=MS.gene64450.t1.exon1;Parent=MS.gene64450.t1 |
| chr2.4 | CDS | 48254856 | 48255083 | 48254856 | ID=cds.MS.gene64450.t1;Parent=MS.gene64450.t1 |
| chr2.4 | exon | 48254293 | 48254541 | 48254293 | ID=MS.gene64450.t1.exon2;Parent=MS.gene64450.t1 |
| chr2.4 | CDS | 48254293 | 48254541 | 48254293 | ID=cds.MS.gene64450.t1;Parent=MS.gene64450.t1 |
| chr2.4 | exon | 48253351 | 48253494 | 48253351 | ID=MS.gene64450.t1.exon3;Parent=MS.gene64450.t1 |
| chr2.4 | CDS | 48253351 | 48253494 | 48253351 | ID=cds.MS.gene64450.t1;Parent=MS.gene64450.t1 |
| Gene Sequence |
| Protein sequence |
