Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64669.t1 | XP_003616410.1 | 96.5 | 1127 | 37 | 2 | 1 | 1126 | 1 | 1126 | 0.00E+00 | 2019.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64669.t1 | Q9M2T1 | 59.1 | 1003 | 379 | 11 | 129 | 1121 | 1 | 982 | 1.7e-303 | 1043.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64669.t1 | G7KBR5 | 96.5 | 1127 | 37 | 2 | 1 | 1126 | 1 | 1126 | 0.0e+00 | 2019.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene64669 | MS.gene011991 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64669.t1 | MTR_5g079920 | 97.072 | 1127 | 31 | 2 | 1 | 1126 | 1 | 1126 | 0.0 | 2240 |
MS.gene64669.t1 | MTR_4g076210 | 35.981 | 214 | 124 | 3 | 41 | 245 | 24 | 233 | 5.82e-29 | 125 |
MS.gene64669.t1 | MTR_4g076210 | 30.303 | 330 | 199 | 7 | 321 | 639 | 228 | 537 | 1.02e-28 | 125 |
MS.gene64669.t1 | MTR_3g109922 | 26.415 | 212 | 142 | 2 | 46 | 243 | 42 | 253 | 7.84e-17 | 86.7 |
MS.gene64669.t1 | MTR_3g109922 | 24.834 | 302 | 196 | 13 | 346 | 637 | 275 | 555 | 1.88e-13 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64669.t1 | AT3G55480 | 61.993 | 1134 | 394 | 14 | 1 | 1121 | 1 | 1110 | 0.0 | 1361 |
MS.gene64669.t1 | AT3G55480 | 58.847 | 1006 | 377 | 14 | 129 | 1121 | 1 | 982 | 0.0 | 1134 |
MS.gene64669.t1 | AT4G11380 | 31.447 | 318 | 185 | 8 | 334 | 639 | 241 | 537 | 2.95e-29 | 126 |
MS.gene64669.t1 | AT4G11380 | 35.981 | 214 | 124 | 3 | 41 | 245 | 24 | 233 | 4.88e-26 | 116 |
MS.gene64669.t1 | AT4G23460 | 31.447 | 318 | 185 | 8 | 334 | 639 | 241 | 537 | 3.47e-29 | 126 |
MS.gene64669.t1 | AT4G23460 | 36.493 | 211 | 121 | 3 | 41 | 242 | 24 | 230 | 3.31e-28 | 123 |
MS.gene64669.t1 | AT4G23460 | 31.447 | 318 | 185 | 8 | 334 | 639 | 147 | 443 | 3.68e-29 | 126 |
MS.gene64669.t1 | AT4G11380 | 31.447 | 318 | 185 | 8 | 334 | 639 | 263 | 559 | 4.51e-29 | 126 |
MS.gene64669.t1 | AT4G11380 | 36.652 | 221 | 126 | 4 | 34 | 245 | 40 | 255 | 5.16e-26 | 116 |
MS.gene64669.t1 | AT5G11490 | 27.230 | 213 | 139 | 4 | 46 | 243 | 41 | 252 | 1.53e-16 | 85.5 |
MS.gene64669.t1 | AT5G11490 | 26.006 | 323 | 208 | 12 | 346 | 660 | 274 | 573 | 1.86e-13 | 75.5 |
MS.gene64669.t1 | AT5G11490 | 27.230 | 213 | 139 | 4 | 46 | 243 | 41 | 252 | 1.53e-16 | 85.5 |
MS.gene64669.t1 | AT5G11490 | 26.006 | 323 | 208 | 12 | 346 | 660 | 274 | 573 | 2.00e-13 | 75.5 |
MS.gene64669.t1 | AT5G11490 | 28.283 | 198 | 122 | 5 | 63 | 243 | 4 | 198 | 4.50e-15 | 80.9 |
MS.gene64669.t1 | AT5G11490 | 26.006 | 323 | 208 | 12 | 346 | 660 | 220 | 519 | 1.87e-13 | 75.5 |
Find 249 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTAGACTGGTCCTTCTTC+TGG | 0.151268 | 5.2:+67909503 | None:intergenic |
AGCACTGAACAGTCAATTTC+TGG | 0.174375 | 5.2:-67909226 | MS.gene64669:CDS |
CATTAAGGTTGCTCCTAAAT+TGG | 0.182499 | 5.2:-67915352 | MS.gene64669:CDS |
CTGAAAGCTTCAATATTAAT+TGG | 0.185952 | 5.2:+67908273 | None:intergenic |
TTCCTAAGCTTCACGATTTA+CGG | 0.222105 | 5.2:-67916036 | MS.gene64669:CDS |
TTGGCTTAAATTTCTTAAAT+AGG | 0.238571 | 5.2:-67907273 | MS.gene64669:CDS |
TGGGGTCAAATAATGCTAAT+TGG | 0.246734 | 5.2:-67915597 | MS.gene64669:CDS |
GCTTGAAGTTTCAGATAAAA+AGG | 0.248262 | 5.2:+67908862 | None:intergenic |
TATAGCGATTCATCCAATTT+AGG | 0.268455 | 5.2:+67915339 | None:intergenic |
TATGGAAGGCTACAAGGTTT+TGG | 0.271210 | 5.2:+67909346 | None:intergenic |
CAGAGTGATCCCCGCCATTC+TGG | 0.272003 | 5.2:+67909098 | None:intergenic |
ATTATTTGAAAATTGTTCTT+TGG | 0.273575 | 5.2:-67908810 | MS.gene64669:CDS |
GTGGATGATCCTGGTACATC+TGG | 0.274029 | 5.2:-67909280 | MS.gene64669:CDS |
ATTCATTCTTAAAGAATTTC+AGG | 0.279242 | 5.2:-67912540 | MS.gene64669:intron |
GGGGATCACTCTGGCACTTC+TGG | 0.282683 | 5.2:-67909088 | MS.gene64669:CDS |
AGAATAACCATTGGAGATAT+TGG | 0.283889 | 5.2:-67908956 | MS.gene64669:CDS |
TTAGGTCTCACTGTGCATTA+AGG | 0.286171 | 5.2:-67909683 | MS.gene64669:intron |
ACGATCAAGTTCTACCATTA+AGG | 0.291541 | 5.2:-67915367 | MS.gene64669:CDS |
AATTCAGTTGGTCCGTAGTT+TGG | 0.302335 | 5.2:-67911340 | MS.gene64669:CDS |
ATTAAACCATTTCCATTTGC+AGG | 0.308293 | 5.2:+67908896 | None:intergenic |
CAATTTAGGAGCAACCTTAA+TGG | 0.310783 | 5.2:+67915353 | None:intergenic |
TTTGAGAGCTTCACATTTCT+CGG | 0.320089 | 5.2:+67917538 | None:intergenic |
ATCGACAGCAATGCTTCATT+TGG | 0.328968 | 5.2:+67916229 | None:intergenic |
CATGGAGGCAATCTCTTCTC+TGG | 0.330338 | 5.2:-67908436 | MS.gene64669:CDS |
TGCAAATGGAAATGGTTTAA+TGG | 0.333946 | 5.2:-67908894 | MS.gene64669:CDS |
GTGCTTGCAGAATGCATATT+TGG | 0.335972 | 5.2:-67909481 | MS.gene64669:CDS |
GAAGGGTACCTTCTCATAAC+TGG | 0.338346 | 5.2:+67911612 | None:intergenic |
CAAAATGTGGAAGCGGAAAA+TGG | 0.345825 | 5.2:-67909532 | MS.gene64669:CDS |
GCAATGATTGTCTGGTTGTT+GGG | 0.349884 | 5.2:-67911291 | MS.gene64669:CDS |
GAAAAGGAATCTCACCTTCC+AGG | 0.359392 | 5.2:-67908249 | MS.gene64669:CDS |
CGCCTAAGGAGGATGTTAAA+AGG | 0.359731 | 5.2:-67915203 | MS.gene64669:CDS |
GCTAGACTGGTCCTTCTTCT+GGG | 0.366325 | 5.2:+67909504 | None:intergenic |
CAAACTTACGAGTGGGTAAC+AGG | 0.366745 | 5.2:+67907226 | None:intergenic |
AAACGTTGCGTCGCAGTCAT+TGG | 0.371905 | 5.2:-67917327 | MS.gene64669:CDS |
ATAAATTTCCTGTCAAGTTA+AGG | 0.372733 | 5.2:-67908326 | MS.gene64669:CDS |
CTTCATTTGCTGCAGATGAT+TGG | 0.376746 | 5.2:-67915756 | MS.gene64669:intron |
TCAGAGCCAACAGTCCTTCC+AGG | 0.377842 | 5.2:+67911822 | None:intergenic |
TATACTTTCTATTATTGCTT+CGG | 0.380033 | 5.2:-67912576 | MS.gene64669:CDS |
TTGGATCCTGCAAATGGAAA+TGG | 0.380142 | 5.2:-67908902 | MS.gene64669:CDS |
AGTAACCTGAGGGAAGAAAT+TGG | 0.383405 | 5.2:+67917478 | None:intergenic |
TAACTTTATAATTGATATGA+TGG | 0.384013 | 5.2:+67911642 | None:intergenic |
TGCAATGATTGTCTGGTTGT+TGG | 0.398445 | 5.2:-67911292 | MS.gene64669:CDS |
AGAAGAGGGTGTATTAATTC+AGG | 0.405710 | 5.2:-67911674 | MS.gene64669:CDS |
CACAGATACAAGAGAAAGAT+TGG | 0.406743 | 5.2:+67907462 | None:intergenic |
ACTAACTGTGAAAGAGATCC+AGG | 0.410053 | 5.2:+67909400 | None:intergenic |
GGAGCGATGTTAACGTCTTC+GGG | 0.413968 | 5.2:+67917584 | None:intergenic |
TAGGTCTCACTGTGCATTAA+GGG | 0.417194 | 5.2:-67909682 | MS.gene64669:CDS |
GGGGTCAAATAATGCTAATT+GGG | 0.421274 | 5.2:-67915596 | MS.gene64669:CDS |
TTCACTTCCTTTAGATGACT+TGG | 0.421488 | 5.2:+67909012 | None:intergenic |
AGGAGCGATGTTAACGTCTT+CGG | 0.421496 | 5.2:+67917583 | None:intergenic |
TATTGAAGCTTTCAGAGAAA+AGG | 0.423988 | 5.2:-67908265 | MS.gene64669:CDS |
TTAATTACAGTTACCGTTGA+AGG | 0.427481 | 5.2:-67907352 | MS.gene64669:CDS |
ATTCCGCCGTCGCTCCGAAT+TGG | 0.427634 | 5.2:+67917669 | None:intergenic |
GGCAGCAATGAGACTGTATC+TGG | 0.429849 | 5.2:-67909187 | MS.gene64669:CDS |
CTGCCCGTGCAATGATTGTC+TGG | 0.430703 | 5.2:-67911299 | MS.gene64669:CDS |
TTTATCAATATGAGATTTCA+AGG | 0.431183 | 5.2:+67908473 | None:intergenic |
AACTGTGAAGAGACTGTGTT+TGG | 0.439362 | 5.2:-67907292 | MS.gene64669:CDS |
TGCAGGTGTACACTGGATAA+TGG | 0.440796 | 5.2:-67915226 | MS.gene64669:CDS |
ACCCAAGTGCTACACTCTCT+TGG | 0.442514 | 5.2:-67908921 | MS.gene64669:CDS |
GTTTCTGAAATCTGAATCAA+TGG | 0.444058 | 5.2:+67909139 | None:intergenic |
TGTTTCCAATTTCTTCCCTC+AGG | 0.444119 | 5.2:-67917483 | MS.gene64669:intron |
ACCTTTACAGAAGCAATCAA+TGG | 0.446625 | 5.2:+67907316 | None:intergenic |
GGGACACTAACCCATTGGTT+AGG | 0.450223 | 5.2:-67916183 | MS.gene64669:CDS |
ACCTCTTGTCCTTGTTGCTG+TGG | 0.451472 | 5.2:-67916113 | MS.gene64669:CDS |
TTTGGGAGAGGCTCATAGCC+TGG | 0.452053 | 5.2:+67909364 | None:intergenic |
TCAAATAAAAGCGCTTAAGC+TGG | 0.452336 | 5.2:-67912600 | MS.gene64669:CDS |
ATCTTCCAGTGTTACATTGA+AGG | 0.455279 | 5.2:-67915408 | MS.gene64669:CDS |
GATCACGAATATCATAGTTC+AGG | 0.461133 | 5.2:+67909599 | None:intergenic |
TTAGTATTTCATGCAGCTCC+AGG | 0.461403 | 5.2:-67909382 | MS.gene64669:CDS |
TTTACAAAGTATCCAATGTC+AGG | 0.462160 | 5.2:+67908303 | None:intergenic |
GCCGACACAGTTGCTGCCAT+TGG | 0.462249 | 5.2:-67911884 | MS.gene64669:CDS |
AAGGACTGTTGGCTCTGATT+AGG | 0.462793 | 5.2:-67911817 | MS.gene64669:CDS |
GGACACTAACCCATTGGTTA+GGG | 0.467416 | 5.2:-67916182 | MS.gene64669:CDS |
CAGAGAAGAGATTGCCTCCA+TGG | 0.468576 | 5.2:+67908437 | None:intergenic |
ACAATCATTGCACGGGCAGC+AGG | 0.469449 | 5.2:+67911303 | None:intergenic |
CCGCCGTCGCTCCGAATTGG+TGG | 0.471478 | 5.2:+67917672 | None:intergenic |
TGACCCCACTCTTCCACATC+GGG | 0.473623 | 5.2:+67915612 | None:intergenic |
TTGGACCTATGTAATTGAAC+TGG | 0.473757 | 5.2:-67909632 | MS.gene64669:CDS |
TTGCTGAAGATCTTCGAACT+TGG | 0.474557 | 5.2:+67908978 | None:intergenic |
CGGAATCGAATCTGCTATCA+AGG | 0.475985 | 5.2:+67917558 | None:intergenic |
CCCATTGATTGCTTCTGTAA+AGG | 0.477851 | 5.2:-67907317 | MS.gene64669:CDS |
AGATAAAACCTGTCATTGAT+AGG | 0.481366 | 5.2:+67909424 | None:intergenic |
CAATCTTTCTCTTGTATCTG+TGG | 0.481936 | 5.2:-67907461 | MS.gene64669:CDS |
TCCAACCTCGATGATGCATC+CGG | 0.482768 | 5.2:-67907424 | MS.gene64669:CDS |
ACTCTCTTGGATCCTGCAAA+TGG | 0.483926 | 5.2:-67908908 | MS.gene64669:CDS |
GGGCGGCGTCAGTGCCGATT+CGG | 0.484741 | 5.2:+67917618 | None:intergenic |
GCTAAAACACAAACACAAAC+CGG | 0.486578 | 5.2:+67907405 | None:intergenic |
TTGTTAAACGATCATTCCCC+CGG | 0.489484 | 5.2:-67915729 | MS.gene64669:CDS |
TCGGCAGTAAATCTCCTGTC+TGG | 0.489995 | 5.2:+67911902 | None:intergenic |
TGGGCACTTCGAGCCATGGC+GGG | 0.491213 | 5.2:-67916157 | MS.gene64669:CDS |
CCTCTTGTCCTTGTTGCTGT+GGG | 0.492340 | 5.2:-67916112 | MS.gene64669:CDS |
CCATCATACTGATCAATGTA+TGG | 0.492359 | 5.2:+67909328 | None:intergenic |
GCATTAAGGGAGAAGATAGT+TGG | 0.492928 | 5.2:-67909669 | MS.gene64669:CDS |
TGCATGCCTGGAAGGACTGT+TGG | 0.494258 | 5.2:-67911828 | MS.gene64669:CDS |
GCAGCTGCTCCAACAACCCC+GGG | 0.496265 | 5.2:+67915711 | None:intergenic |
GAGACTGTATCTGGCGATGA+AGG | 0.497805 | 5.2:-67909178 | MS.gene64669:CDS |
CAACGAAGTCTCTTGAGTCT+TGG | 0.498053 | 5.2:-67909048 | MS.gene64669:CDS |
ATTCTGCAAGCACGCTAGAC+TGG | 0.498594 | 5.2:+67909491 | None:intergenic |
AGCAGCTGCTCCAACAACCC+CGG | 0.500132 | 5.2:+67915710 | None:intergenic |
CCATACATTGATCAGTATGA+TGG | 0.500228 | 5.2:-67909328 | MS.gene64669:CDS |
GGCATGGGCACTTCGAGCCA+TGG | 0.500553 | 5.2:-67916161 | MS.gene64669:CDS |
TCAGAGGAGGTGGATGATCC+TGG | 0.504366 | 5.2:-67909289 | MS.gene64669:CDS |
ATCCGTAAATCGTGAAGCTT+AGG | 0.506751 | 5.2:+67916034 | None:intergenic |
ATACACCCTCTTCTCCATCC+AGG | 0.508359 | 5.2:+67911683 | None:intergenic |
GCTTCAATATTAATTGGAAG+TGG | 0.508821 | 5.2:+67908279 | None:intergenic |
TCATCGAGGTTGGAAGCTAC+TGG | 0.508862 | 5.2:+67907433 | None:intergenic |
GAAGTCTCTTGAGTCTTGGT+TGG | 0.509337 | 5.2:-67909044 | MS.gene64669:CDS |
TTAGAGGCAAAAGGTGGTGA+TGG | 0.514821 | 5.2:+67908373 | None:intergenic |
TCAACGGCGGTGTTCCGAAT+CGG | 0.514995 | 5.2:-67917632 | MS.gene64669:CDS |
GCTCAGCATCTTCAATGCTA+AGG | 0.515822 | 5.2:+67907489 | None:intergenic |
GAACCATCCAAGTCATCTAA+AGG | 0.517839 | 5.2:-67909019 | MS.gene64669:CDS |
AGTGCCCATGCCCTAACCAA+TGG | 0.518324 | 5.2:+67916172 | None:intergenic |
GATCGTGATAAGTACTCGTC+TGG | 0.522233 | 5.2:+67915384 | None:intergenic |
ATGGCAACTGCATGCCTGGA+AGG | 0.522537 | 5.2:-67911836 | MS.gene64669:CDS |
CTTCCTTTAGATGACTTGGA+TGG | 0.523928 | 5.2:+67909016 | None:intergenic |
AGTGTACATCACCATTGTTA+TGG | 0.524053 | 5.2:-67915278 | MS.gene64669:CDS |
GTGCCCATGCCCTAACCAAT+GGG | 0.524137 | 5.2:+67916173 | None:intergenic |
TAAACCAGCGCTAGTTTCCA+TGG | 0.526393 | 5.2:-67908454 | MS.gene64669:CDS |
TCTTCCAGTGTTACATTGAA+GGG | 0.526686 | 5.2:-67915407 | MS.gene64669:CDS |
AGTACTGTACTCAACATCCT+TGG | 0.527822 | 5.2:+67911240 | None:intergenic |
ATGGAGGCGGATTCCCGCCA+TGG | 0.527903 | 5.2:+67916144 | None:intergenic |
TTAATGAAAACCAGAATGGC+GGG | 0.528003 | 5.2:-67909108 | MS.gene64669:CDS |
CAATGATTGTCTGGTTGTTG+GGG | 0.529613 | 5.2:-67911290 | MS.gene64669:CDS |
TTCTATCCAAACTTACGAGT+GGG | 0.532797 | 5.2:+67907219 | None:intergenic |
CAATTGTTTCCAGAAGGACC+TGG | 0.533612 | 5.2:-67916206 | MS.gene64669:CDS |
GTCCGTTTCACTTTCTGACT+AGG | 0.534638 | 5.2:+67908411 | None:intergenic |
ATGTCAGGCCTTAACTTGAC+AGG | 0.535081 | 5.2:+67908318 | None:intergenic |
TCTTCCCGATGTGGAAGAGT+GGG | 0.535399 | 5.2:-67915616 | MS.gene64669:CDS |
GCCTCCATGGAAACTAGCGC+TGG | 0.537409 | 5.2:+67908450 | None:intergenic |
ATTATATTCGAGATCCAGAC+AGG | 0.538111 | 5.2:-67911916 | MS.gene64669:CDS |
ATACTTCTAAACATACAAGA+TGG | 0.538534 | 5.2:+67908831 | None:intergenic |
GGACAAGAGGTGCAATTGCA+TGG | 0.538582 | 5.2:+67916125 | None:intergenic |
ATTACACGAAGAAAACATGA+TGG | 0.540141 | 5.2:+67915527 | None:intergenic |
CTCACATATTCAAACATCCC+TGG | 0.540424 | 5.2:+67908231 | None:intergenic |
TAACAGTGATTCAGAGGAGG+TGG | 0.542007 | 5.2:-67909299 | MS.gene64669:CDS |
TGGATGATCCTGGTACATCT+GGG | 0.542973 | 5.2:-67909279 | MS.gene64669:CDS |
ACACTGGATAATGGCGCCTA+AGG | 0.543775 | 5.2:-67915217 | MS.gene64669:CDS |
CATCTGAACCTATCAATGAC+AGG | 0.543852 | 5.2:-67909432 | MS.gene64669:CDS |
GCATAGCTTTAGCAAACACT+TGG | 0.544634 | 5.2:+67912678 | None:intergenic |
ACCGGATGCATCATCGAGGT+TGG | 0.544743 | 5.2:+67907423 | None:intergenic |
TAACCCATTGGTTAGGGCAT+GGG | 0.547486 | 5.2:-67916176 | MS.gene64669:CDS |
GTCATTGGAAGTGAAGAAGC+TGG | 0.548244 | 5.2:-67917312 | MS.gene64669:CDS |
CAGATCCCTGGATGGAGAAG+AGG | 0.548321 | 5.2:-67911689 | MS.gene64669:CDS |
GCAGTTGTACTTGCAGCTGC+AGG | 0.551272 | 5.2:-67915243 | MS.gene64669:CDS |
CGGTATGTGATAGCGAGGCA+TGG | 0.551882 | 5.2:-67915564 | MS.gene64669:CDS |
ATCACTGAGCAAAGCTTCAA+CGG | 0.552688 | 5.2:-67917648 | MS.gene64669:CDS |
GTCGGAGCATTTACCTTCAA+CGG | 0.553038 | 5.2:+67907339 | None:intergenic |
AGAGTCTCAAAATGTGGAAG+CGG | 0.553315 | 5.2:-67909539 | MS.gene64669:CDS |
AGAAATGTGAAGCTCTCAAA+CGG | 0.553733 | 5.2:-67917535 | MS.gene64669:CDS |
CCGTAGTTTGGATACAATCA+AGG | 0.553966 | 5.2:-67911328 | MS.gene64669:CDS |
CAGAATGGCGGGGATCACTC+TGG | 0.554046 | 5.2:-67909097 | MS.gene64669:CDS |
TCAATGTATGGAAGGCTACA+AGG | 0.554638 | 5.2:+67909340 | None:intergenic |
CTGTCATTGATAGGTTCAGA+TGG | 0.555128 | 5.2:+67909433 | None:intergenic |
CTTACCACGTATCTTGAAGC+AGG | 0.555381 | 5.2:+67915144 | None:intergenic |
CCTTTACAGAAGCAATCAAT+GGG | 0.555486 | 5.2:+67907317 | None:intergenic |
AATTGTTTCCAGAAGGACCT+GGG | 0.557416 | 5.2:-67916205 | MS.gene64669:CDS |
ATGAAGAAGTCTTCATAATG+TGG | 0.558926 | 5.2:+67912641 | None:intergenic |
TTGTAAGGTTATAATTCAGT+TGG | 0.559453 | 5.2:-67911352 | MS.gene64669:intron |
GGTATGTGATAGCGAGGCAT+GGG | 0.560492 | 5.2:-67915563 | MS.gene64669:CDS |
AAATGGTGAATCCCAGAAGA+AGG | 0.561118 | 5.2:-67909515 | MS.gene64669:CDS |
GTGCGGTGAAATCAGATCCC+TGG | 0.563526 | 5.2:-67911701 | MS.gene64669:CDS |
AAAAGGAATCTCACCTTCCA+GGG | 0.568458 | 5.2:-67908248 | MS.gene64669:CDS |
TCTTCAGCAAGAATAACCAT+TGG | 0.568661 | 5.2:-67908965 | MS.gene64669:CDS |
CGTCTTCGGGATCGTCGTAG+AGG | 0.570073 | 5.2:+67917597 | None:intergenic |
TTGCAGCTGCAGGTGTACAC+TGG | 0.570380 | 5.2:-67915233 | MS.gene64669:CDS |
GTCGATCAATTGTTTCCAGA+AGG | 0.573460 | 5.2:-67916212 | MS.gene64669:CDS |
TTACTCGCTCTCATCGCTCA+AGG | 0.574127 | 5.2:-67917512 | MS.gene64669:CDS |
CTTTGGGTGAGATGATTCCA+AGG | 0.574682 | 5.2:-67911257 | MS.gene64669:CDS |
TCAGAAGACCCAGATGTACC+AGG | 0.574948 | 5.2:+67909271 | None:intergenic |
TTGAAGCAGGCGATGATCGA+AGG | 0.575259 | 5.2:+67915157 | None:intergenic |
TAAGCTTCACGATTTACGGA+TGG | 0.577105 | 5.2:-67916032 | MS.gene64669:CDS |
AGCCTAGTCAGAAAGTGAAA+CGG | 0.578195 | 5.2:-67908413 | MS.gene64669:CDS |
CATACTGATCAATGTATGGA+AGG | 0.579346 | 5.2:+67909332 | None:intergenic |
TTCTTCCCGATGTGGAAGAG+TGG | 0.581596 | 5.2:-67915617 | MS.gene64669:CDS |
TACACCCTCTTCTCCATCCA+GGG | 0.581837 | 5.2:+67911684 | None:intergenic |
ATCCAAGAGAGTGTAGCACT+TGG | 0.583531 | 5.2:+67908919 | None:intergenic |
CGATATAGTCTTACTAGACG+AGG | 0.583860 | 5.2:-67908777 | MS.gene64669:CDS |
GTCAAGTTAAGGCCTGACAT+TGG | 0.584240 | 5.2:-67908315 | MS.gene64669:CDS |
CAGTACTCAAGTATCTTGCT+TGG | 0.584331 | 5.2:-67911224 | MS.gene64669:CDS |
AGATCCCTGGATGGAGAAGA+GGG | 0.584446 | 5.2:-67911688 | MS.gene64669:CDS |
TCCAAGAGAGTGTAGCACTT+GGG | 0.585946 | 5.2:+67908920 | None:intergenic |
ATGGGCACTTCGAGCCATGG+CGG | 0.586025 | 5.2:-67916158 | MS.gene64669:CDS |
GAGGTGCAATTGCATGGAGG+CGG | 0.590850 | 5.2:+67916131 | None:intergenic |
AATGTTAATGAAAACCAGAA+TGG | 0.591079 | 5.2:-67909112 | MS.gene64669:CDS |
ACAACCAGACAATCATTGCA+CGG | 0.591640 | 5.2:+67911295 | None:intergenic |
AACTGTAATTAAGCATGGCG+TGG | 0.591666 | 5.2:+67907363 | None:intergenic |
TACTTCTAAACATACAAGAT+GGG | 0.594433 | 5.2:+67908832 | None:intergenic |
CCTTGATTGTATCCAAACTA+CGG | 0.594869 | 5.2:+67911328 | None:intergenic |
GTCTTCGGGATCGTCGTAGA+GGG | 0.596516 | 5.2:+67917598 | None:intergenic |
ATGGTGATGTACACTGCAGT+AGG | 0.599426 | 5.2:+67915286 | None:intergenic |
CAACCAGACAATCATTGCAC+GGG | 0.600185 | 5.2:+67911296 | None:intergenic |
CAGGGATGTTTGAATATGTG+AGG | 0.600419 | 5.2:-67908230 | MS.gene64669:CDS |
CTGGATAATGGCGCCTAAGG+AGG | 0.601876 | 5.2:-67915214 | MS.gene64669:CDS |
TACAGAAGCAATCAATGGGT+CGG | 0.603397 | 5.2:+67907321 | None:intergenic |
CTGGCCCTTCAATGTAACAC+TGG | 0.604405 | 5.2:+67915403 | None:intergenic |
TTTCTATCCAAACTTACGAG+TGG | 0.604617 | 5.2:+67907218 | None:intergenic |
CAATTTAGAGTCTCAAAATG+TGG | 0.604881 | 5.2:-67909545 | MS.gene64669:CDS |
CCCACAGCAACAAGGACAAG+AGG | 0.606377 | 5.2:+67916112 | None:intergenic |
CTTGCAGAATGCATATTTGG+TGG | 0.609195 | 5.2:-67909478 | MS.gene64669:CDS |
TTCGGGATCGTCGTAGAGGG+CGG | 0.609997 | 5.2:+67917601 | None:intergenic |
CAATCATTGCACGGGCAGCA+GGG | 0.610182 | 5.2:+67911304 | None:intergenic |
ACATGCATCTGCAATTGAAG+AGG | 0.611326 | 5.2:-67916005 | MS.gene64669:intron |
TTGACCCCACTCTTCCACAT+CGG | 0.614765 | 5.2:+67915611 | None:intergenic |
ACGGTAACTGTAATTAAGCA+TGG | 0.616669 | 5.2:+67907358 | None:intergenic |
CTAACCCATTGGTTAGGGCA+TGG | 0.619044 | 5.2:-67916177 | MS.gene64669:CDS |
AGCTGTTAACAGTGATTCAG+AGG | 0.621517 | 5.2:-67909305 | MS.gene64669:CDS |
CTGTTGGCTCTGATTAGGCA+AGG | 0.622813 | 5.2:-67911812 | MS.gene64669:intron |
GGTACCTTCTCATAACTGGA+TGG | 0.623807 | 5.2:+67911616 | None:intergenic |
ACGGCTTCCAATATCTCCAA+TGG | 0.624159 | 5.2:+67908949 | None:intergenic |
GTTCCACCAATTCGGAGCGA+CGG | 0.624950 | 5.2:-67917675 | MS.gene64669:CDS |
ACCAATGGCAGCAACTGTGT+CGG | 0.627691 | 5.2:+67911883 | None:intergenic |
GGAAAGCAACTCTTTAACAG+AGG | 0.628805 | 5.2:-67907536 | MS.gene64669:CDS |
CATATTCAAACATCCCTGGA+AGG | 0.630328 | 5.2:+67908235 | None:intergenic |
TGTAGCACTTGGGTTTAACA+CGG | 0.630885 | 5.2:+67908930 | None:intergenic |
GTTAATGAAAACCAGAATGG+CGG | 0.634713 | 5.2:-67909109 | MS.gene64669:CDS |
AGAACCATCCAGTTATGAGA+AGG | 0.635342 | 5.2:-67911620 | MS.gene64669:intron |
TAATGTGGAGCAAATAGAGA+GGG | 0.641141 | 5.2:+67912656 | None:intergenic |
CTCAGCCAGTTCAATTACAT+AGG | 0.646264 | 5.2:+67909627 | None:intergenic |
TTCTAAACATACAAGATGGG+AGG | 0.651340 | 5.2:+67908835 | None:intergenic |
AATGATTGTCTGGTTGTTGG+GGG | 0.651414 | 5.2:-67911289 | MS.gene64669:CDS |
CCACCAATTCGGAGCGACGG+CGG | 0.654914 | 5.2:-67917672 | MS.gene64669:CDS |
TAATGAAAACCAGAATGGCG+GGG | 0.660035 | 5.2:-67909107 | MS.gene64669:CDS |
CTTGCAGCAATGAAGTTGTG+AGG | 0.663822 | 5.2:-67915311 | MS.gene64669:CDS |
TCACATTCTAAAGCTGAACA+AGG | 0.664089 | 5.2:-67907557 | MS.gene64669:CDS |
AGTAAGACTATATCGAACAT+CGG | 0.664529 | 5.2:+67908785 | None:intergenic |
ATTGTTTCCAGAAGGACCTG+GGG | 0.665392 | 5.2:-67916204 | MS.gene64669:CDS |
TCGAATCTGCTATCAAGGAG+AGG | 0.669151 | 5.2:+67917563 | None:intergenic |
TCTCTGGGCACATAAACCAA+TGG | 0.670656 | 5.2:+67911868 | None:intergenic |
GTGTGAGATTCTTCCCGATG+TGG | 0.670784 | 5.2:-67915625 | MS.gene64669:CDS |
CTAACTGTGAAAGAGATCCA+GGG | 0.670939 | 5.2:+67909401 | None:intergenic |
CTTCCCGATGTGGAAGAGTG+GGG | 0.673122 | 5.2:-67915615 | MS.gene64669:CDS |
TCTGGTTCTAGTGAAGTCAG+TGG | 0.676233 | 5.2:-67909208 | MS.gene64669:CDS |
GGATGTTTGAATATGTGAGG+AGG | 0.679287 | 5.2:-67908227 | MS.gene64669:intron |
ATAATGTGGAGCAAATAGAG+AGG | 0.682055 | 5.2:+67912655 | None:intergenic |
TACCACTGAGAAGACTGTGT+CGG | 0.685950 | 5.2:-67915445 | MS.gene64669:CDS |
TGTTAACAGTGATTCAGAGG+AGG | 0.690003 | 5.2:-67909302 | MS.gene64669:CDS |
ACTGAGCAAAGCTTCAACGG+CGG | 0.692518 | 5.2:-67917645 | MS.gene64669:CDS |
ATCGCCTGCTTCAAGATACG+TGG | 0.696189 | 5.2:-67915148 | MS.gene64669:intron |
GGTGAAATCAGATCCCTGGA+TGG | 0.698792 | 5.2:-67911697 | MS.gene64669:CDS |
AGCTGCTCCAACAACCCCGG+GGG | 0.704262 | 5.2:+67915713 | None:intergenic |
TTCCGACACAGTCTTCTCAG+TGG | 0.704709 | 5.2:+67915443 | None:intergenic |
TTGTTTCCAGAAGGACCTGG+GGG | 0.705561 | 5.2:-67916203 | MS.gene64669:CDS |
GATTCTTACTACAATCACAA+AGG | 0.709630 | 5.2:-67911166 | MS.gene64669:intron |
CAAGAGGTGCAATTGCATGG+AGG | 0.714700 | 5.2:+67916128 | None:intergenic |
CAGCTGCTCCAACAACCCCG+GGG | 0.718459 | 5.2:+67915712 | None:intergenic |
CTGTTATGAGACCATAACAA+TGG | 0.726798 | 5.2:+67915267 | None:intergenic |
ACCAGCGCTAGTTTCCATGG+AGG | 0.738902 | 5.2:-67908451 | MS.gene64669:CDS |
ACAAACCGGATGCATCATCG+AGG | 0.753868 | 5.2:+67907419 | None:intergenic |
GATCGAAGGACAAACAACAG+TGG | 0.758896 | 5.2:+67915171 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 67907231 | 67917699 | 67907231 | ID=MS.gene64669 |
chr5.2 | mRNA | 67907231 | 67917699 | 67907231 | ID=MS.gene64669.t1;Parent=MS.gene64669 |
chr5.2 | exon | 67917484 | 67917699 | 67917484 | ID=MS.gene64669.t1.exon1;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67917484 | 67917699 | 67917484 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67917281 | 67917357 | 67917281 | ID=MS.gene64669.t1.exon2;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67917281 | 67917357 | 67917281 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67916006 | 67916255 | 67916006 | ID=MS.gene64669.t1.exon3;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67916006 | 67916255 | 67916006 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67915149 | 67915763 | 67915149 | ID=MS.gene64669.t1.exon4;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67915149 | 67915763 | 67915149 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67912541 | 67912714 | 67912541 | ID=MS.gene64669.t1.exon5;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67912541 | 67912714 | 67912541 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67911813 | 67911939 | 67911813 | ID=MS.gene64669.t1.exon6;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67911813 | 67911939 | 67911813 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67911621 | 67911730 | 67911621 | ID=MS.gene64669.t1.exon7;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67911621 | 67911730 | 67911621 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67911167 | 67911367 | 67911167 | ID=MS.gene64669.t1.exon8;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67911167 | 67911367 | 67911167 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67908725 | 67909701 | 67908725 | ID=MS.gene64669.t1.exon9;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67908725 | 67909701 | 67908725 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67908228 | 67908497 | 67908228 | ID=MS.gene64669.t1.exon10;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67908228 | 67908497 | 67908228 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
chr5.2 | exon | 67907231 | 67907594 | 67907231 | ID=MS.gene64669.t1.exon11;Parent=MS.gene64669.t1 |
chr5.2 | CDS | 67907231 | 67907594 | 67907231 | ID=cds.MS.gene64669.t1;Parent=MS.gene64669.t1 |
Gene Sequence |
Protein sequence |