AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64793

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64793.t1 MTR_5g022510 97.153 281 8 0 1 281 1 281 0.0 566
MS.gene64793.t1 MTR_5g022510 97.942 243 5 0 39 281 14 256 5.35e-180 496
MS.gene64793.t1 MTR_4g073410 72.043 279 73 1 6 279 7 285 9.60e-148 415
MS.gene64793.t1 MTR_4g061140 64.583 240 84 1 6 244 8 247 2.02e-113 327
MS.gene64793.t1 MTR_4g061140 64.435 239 84 1 6 243 8 246 2.63e-112 324
MS.gene64793.t1 MTR_4g061140 62.911 213 78 1 33 244 1 213 8.75e-97 283
MS.gene64793.t1 MTR_3g088160 49.425 261 105 6 13 246 100 360 1.94e-76 238
MS.gene64793.t1 MTR_3g088160 49.425 261 105 6 13 246 100 360 6.22e-76 238
MS.gene64793.t1 MTR_5g008440 51.497 167 66 2 78 243 29 181 3.73e-51 167
MS.gene64793.t1 MTR_3g107060 37.860 243 127 6 11 243 86 314 5.13e-41 144
MS.gene64793.t1 MTR_7g029030 29.278 263 141 10 35 256 60 318 4.06e-18 83.2
MS.gene64793.t1 MTR_4g095450 28.854 253 135 7 32 243 59 307 1.52e-16 78.6
MS.gene64793.t1 MTR_1g025980 29.225 284 133 13 22 253 46 313 2.63e-16 77.8
MS.gene64793.t1 MTR_4g030890 27.208 283 136 9 15 242 113 380 1.00e-14 73.9
MS.gene64793.t1 MTR_7g093370 24.719 267 151 9 22 242 91 353 2.31e-13 69.7
MS.gene64793.t1 MTR_5g064610 31.928 166 79 5 27 158 113 278 1.56e-12 67.4
MS.gene64793.t1 MTR_3g094670 26.087 253 133 9 34 242 62 304 3.61e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64793.t1 AT4G35000 73.745 259 68 0 1 259 1 259 6.14e-144 405
MS.gene64793.t1 AT4G35970 66.788 274 90 1 6 279 5 277 2.56e-135 384
MS.gene64793.t1 AT4G35970 72.018 218 60 1 6 223 5 221 2.92e-115 331
MS.gene64793.t1 AT3G09640 63.180 239 88 0 6 244 9 247 3.61e-109 316
MS.gene64793.t1 AT3G09640 63.180 239 88 0 6 244 9 247 3.61e-109 316
MS.gene64793.t1 AT1G07890 60.000 240 95 1 6 244 8 247 9.89e-105 305
MS.gene64793.t1 AT1G07890 60.000 240 95 1 6 244 8 247 9.89e-105 305
MS.gene64793.t1 AT1G07890 60.000 240 95 1 6 244 8 247 9.89e-105 305
MS.gene64793.t1 AT1G07890 60.000 240 95 1 6 244 8 247 9.89e-105 305
MS.gene64793.t1 AT1G07890 60.000 240 95 1 6 244 8 247 9.89e-105 305
MS.gene64793.t1 AT1G07890 60.000 240 95 1 6 244 8 247 9.89e-105 305
MS.gene64793.t1 AT1G07890 60.000 240 95 1 6 244 8 247 9.89e-105 305
MS.gene64793.t1 AT1G07890 59.583 240 96 1 6 244 8 247 3.67e-104 303
MS.gene64793.t1 AT4G08390 49.042 261 106 6 13 246 106 366 7.52e-78 241
MS.gene64793.t1 AT4G08390 49.042 261 106 6 13 246 106 366 7.52e-78 241
MS.gene64793.t1 AT4G08390 49.042 261 106 6 13 246 106 366 7.52e-78 241
MS.gene64793.t1 AT4G08390 49.042 261 106 6 13 246 105 365 1.23e-77 240
MS.gene64793.t1 AT1G77490 49.042 261 106 6 13 246 85 345 1.20e-75 237
MS.gene64793.t1 AT1G77490 49.042 261 106 6 13 246 85 345 1.53e-75 236
MS.gene64793.t1 AT4G08390 44.828 261 91 7 13 246 106 340 2.59e-64 205
MS.gene64793.t1 AT4G32320 37.288 236 124 6 18 243 102 323 1.90e-39 140
MS.gene64793.t1 AT4G17690 37.019 208 85 8 72 243 108 305 2.82e-22 94.7
MS.gene64793.t1 AT4G16270 30.496 282 123 12 23 249 73 336 2.05e-21 92.8
MS.gene64793.t1 AT1G49570 27.857 280 136 9 22 247 70 337 5.51e-19 85.9
MS.gene64793.t1 AT4G30170 30.620 258 127 10 31 243 58 308 2.74e-16 77.8
MS.gene64793.t1 AT4G09010 34.375 160 71 5 32 157 49 208 1.08e-15 75.9
MS.gene64793.t1 AT4G09010 34.375 160 71 5 32 157 114 273 2.68e-15 75.5
MS.gene64793.t1 AT5G14130 27.027 259 143 8 31 247 63 317 2.95e-15 75.1
MS.gene64793.t1 AT5G14130 27.027 259 143 8 31 247 104 358 4.96e-15 74.7
MS.gene64793.t1 AT4G09010 34.375 160 71 5 32 157 161 320 7.02e-15 74.3
MS.gene64793.t1 AT4G37530 26.966 267 139 9 32 249 59 318 2.70e-14 72.4
MS.gene64793.t1 AT5G42180 28.364 275 132 10 22 245 45 305 3.60e-14 71.6
MS.gene64793.t1 AT4G37520 26.592 267 140 9 32 249 59 318 5.30e-13 68.6
MS.gene64793.t1 AT3G49960 28.352 261 131 9 32 243 59 312 8.92e-13 67.8
MS.gene64793.t1 AT4G37530 32.022 178 99 7 32 191 59 232 2.03e-12 66.2
MS.gene64793.t1 AT5G17820 26.296 270 134 12 10 230 29 282 2.13e-12 66.6
MS.gene64793.t1 AT5G17820 26.296 270 134 12 10 230 82 335 7.19e-12 65.5
MS.gene64793.t1 AT5G15180 26.937 271 137 9 26 247 58 316 9.10e-12 65.1

Find 63 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAGGGAACTAATGAAAT+TGG 0.251753 5.2:-13533639 MS.gene64793:intron
TGCCTCAACTGTTGTGATCC+TGG 0.267857 5.2:-13533276 MS.gene64793:CDS
CATGATTTAATTACCTTGTT+TGG 0.286806 5.2:+13534083 None:intergenic
CACAAGAAACTCTCTGAATT+AGG 0.339734 5.2:-13533359 MS.gene64793:CDS
ATGTACTAGTACCTTTCTTC+CGG 0.351786 5.2:+13534268 None:intergenic
CCAACTATTCACTTTGTTCC+CGG 0.389997 5.2:-13534287 MS.gene64793:CDS
AGGTCCGCATATGAAACTTT+GGG 0.390870 5.2:+13534750 None:intergenic
TTATATGTATTTCAGCTAGC+TGG 0.393811 5.2:-13534338 MS.gene64793:intron
TAATTACCTTGTTTGGCATC+TGG 0.400655 5.2:+13534090 None:intergenic
TGATTCCTTATAGAACCATT+TGG 0.401526 5.2:+13534965 None:intergenic
GCCTCAACTGTTGTGATCCT+GGG 0.428816 5.2:-13533275 MS.gene64793:CDS
AAAGATCGCTCTAACTTTGA+AGG 0.430021 5.2:-13533785 MS.gene64793:CDS
AAGGTCCGCATATGAAACTT+TGG 0.433809 5.2:+13534749 None:intergenic
TGTACTAGTACCTTTCTTCC+GGG 0.435662 5.2:+13534269 None:intergenic
TGGCAGTTATCGTTCTCAAT+TGG 0.438208 5.2:-13533324 MS.gene64793:CDS
CATAGAGTTCAACATATTTG+CGG 0.439517 5.2:+13533558 None:intergenic
TCAACATATTTGCGGAATGC+AGG 0.460562 5.2:+13533566 None:intergenic
TCACTTTGTTCCCGGAAGAA+AGG 0.460671 5.2:-13534279 MS.gene64793:intron
TATATGTATTTCAGCTAGCT+GGG 0.463788 5.2:-13534337 MS.gene64793:intron
CAATTGGCTAAGGCAGCGTT+AGG 0.473147 5.2:-13533308 MS.gene64793:CDS
GTTGTGGCTGTAGAGGTCAC+TGG 0.475048 5.2:-13534314 MS.gene64793:CDS
AAAACAGCTGTTGAATTATG+TGG 0.483315 5.2:-13534908 MS.gene64793:intron
AGCTGGGGTTGTGGCTGTAG+AGG 0.496133 5.2:-13534321 MS.gene64793:CDS
GCTCTAACTTTGAAGGTCAA+TGG 0.497264 5.2:-13533778 MS.gene64793:CDS
GGGGTCCAAATGGTTCTATA+AGG 0.497436 5.2:-13534970 MS.gene64793:CDS
CCGGGAACAAAGTGAATAGT+TGG 0.498623 5.2:+13534287 None:intergenic
GCTGAACCATGCTGCTAACA+AGG 0.508818 5.2:-13534936 MS.gene64793:CDS
ATTTCAGCTAGCTGGGGTTG+TGG 0.511946 5.2:-13534330 MS.gene64793:intron
ATTATAAAATAACCTGGTAA+AGG 0.515916 5.2:+13534730 None:intergenic
TTCATATGCGGACCTTTACC+AGG 0.516618 5.2:-13534742 MS.gene64793:intron
TCTGGAAGGCGACCTTCTTG+TGG 0.517530 5.2:+13534108 None:intergenic
TTGAGAAACAGAGGAAGTGA+AGG 0.521165 5.2:-13534781 MS.gene64793:intron
TCAAGCCCTTGTTAGCAGCA+TGG 0.531740 5.2:+13534930 None:intergenic
ATATGTTGAACTCTATGCTA+AGG 0.543090 5.2:-13533552 MS.gene64793:intron
TTGTACCAAAGTGTGGCCTC+CGG 0.545189 5.2:+13533916 None:intergenic
AAAGACATTGTAGCTCTCTC+CGG 0.548124 5.2:-13533935 MS.gene64793:CDS
CGCCTTCCAGATGCCAAACA+AGG 0.549529 5.2:-13534096 MS.gene64793:intron
TTATCGTTCTCAATTGGCTA+AGG 0.549693 5.2:-13533318 MS.gene64793:CDS
ATTTATAGGTGGCATGATGC+TGG 0.555051 5.2:-13535019 MS.gene64793:intron
TACCTTGTTTGGCATCTGGA+AGG 0.559846 5.2:+13534094 None:intergenic
AATTAATTTGTACCAAAGTG+TGG 0.573092 5.2:+13533909 None:intergenic
GGCTAAGGCAGCGTTAGGAA+TGG 0.573545 5.2:-13533303 MS.gene64793:CDS
TAAGAGTTATCAAACTTGAG+AGG 0.573775 5.2:+13533746 None:intergenic
TTGAGAACGATAACTGCCAC+CGG 0.582999 5.2:+13533328 None:intergenic
AAGAGTTATCAAACTTGAGA+GGG 0.589980 5.2:+13533747 None:intergenic
TCTCTCCGGAGGCCACACTT+TGG 0.591661 5.2:-13533921 MS.gene64793:intron
TCTGAATTAGGCTTCAATCC+CGG 0.595170 5.2:-13533347 MS.gene64793:CDS
TACGCTAATCGTAGCATGAG+AGG 0.599636 5.2:+13535117 None:intergenic
GGTCCGCATATGAAACTTTG+GGG 0.601066 5.2:+13534751 None:intergenic
TCAACTAGAGCCTTGTCTGT+AGG 0.607702 5.2:+13533593 None:intergenic
ATTGAAGCTTCCTACAGACA+AGG 0.615401 5.2:-13533603 MS.gene64793:CDS
CTGAACCATGCTGCTAACAA+GGG 0.615953 5.2:-13534935 MS.gene64793:CDS
GACATTGTAGCTCTCTCCGG+AGG 0.618468 5.2:-13533932 MS.gene64793:CDS
TCATTGGAATCTCCACAAGA+AGG 0.637304 5.2:-13534120 MS.gene64793:CDS
ACCCAGGATCACAACAGTTG+AGG 0.637431 5.2:+13533274 None:intergenic
ATATGTATTTCAGCTAGCTG+GGG 0.644095 5.2:-13534336 MS.gene64793:intron
TGAGCTCAAGTAAGTAACCC+AGG 0.647120 5.2:+13533258 None:intergenic
AGAGTATGTTAAAGAAATCG+AGG 0.648519 5.2:-13535187 MS.gene64793:CDS
ACACCCCAAAGTTTCATATG+CGG 0.685445 5.2:-13534754 MS.gene64793:CDS
TGAGAACGATAACTGCCACC+GGG 0.688112 5.2:+13533329 None:intergenic
GTGGCTGTAGAGGTCACTGG+TGG 0.707904 5.2:-13534311 MS.gene64793:CDS
GAATTAGGCTTCAATCCCGG+TGG 0.713172 5.2:-13533344 MS.gene64793:CDS
GTATGTTAAAGAAATCGAGG+AGG 0.749911 5.2:-13535184 MS.gene64793:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTATAAAATAACC+TGG + chr5.2:13533730-13533749 None:intergenic 10.0%
!!! AATATATAGTATTGATTTAT+AGG - chr5.2:13533418-13533437 MS.gene64793:intron 10.0%
!!! CTCTATTTTTTTTTTTTTTT+TGG - chr5.2:13534951-13534970 MS.gene64793:CDS 10.0%
!! AAGATTAATAAGCAAAAAAT+TGG + chr5.2:13533628-13533647 None:intergenic 15.0%
!! ATTATTATAGTAGTATTATG+AGG - chr5.2:13534287-13534306 MS.gene64793:CDS 15.0%
!! TATGTATATGTTATAGTAAA+AGG + chr5.2:13533390-13533409 None:intergenic 15.0%
!! TGTATAAAAAACTATATTTC+AGG - chr5.2:13534447-13534466 MS.gene64793:intron 15.0%
!! TTCTTCAAGAAATATAATAA+AGG + chr5.2:13534593-13534612 None:intergenic 15.0%
!!! ATAGTATTATGTATTTTTTG+TGG - chr5.2:13535007-13535026 MS.gene64793:CDS 15.0%
!!! TAATGATTTTGAATTTTACT+AGG - chr5.2:13535034-13535053 MS.gene64793:intron 15.0%
!!! TTAATTCATATTCAATTTTG+TGG + chr5.2:13533984-13534003 None:intergenic 15.0%
!! AATACAAGATTAACATAAAC+AGG - chr5.2:13534796-13534815 MS.gene64793:intron 20.0%
!! AATTCACTTGAATAAATGAT+TGG - chr5.2:13533880-13533899 MS.gene64793:intron 20.0%
!! ATACAAGATTAACATAAACA+GGG - chr5.2:13534797-13534816 MS.gene64793:intron 20.0%
!! ATTAATCGTGTGTAAAAATA+TGG + chr5.2:13534034-13534053 None:intergenic 20.0%
!! ATTATAAAATAACCTGGTAA+AGG + chr5.2:13533724-13533743 None:intergenic 20.0%
!! CTAGATTAAGTTAAAGATTA+TGG - chr5.2:13533908-13533927 MS.gene64793:intron 20.0%
!! TCATTCATTTCAATTGATAA+GGG - chr5.2:13534633-13534652 MS.gene64793:intron 20.0%
!!! ATATAGTATTGATTTATAGG+TGG - chr5.2:13533421-13533440 MS.gene64793:intron 20.0%
!!! TATTTTGAATTAGGATTCAT+TGG - chr5.2:13534315-13534334 MS.gene64793:CDS 20.0%
!!! TATTTTTACACACGATTAAT+CGG - chr5.2:13534034-13534053 MS.gene64793:intron 20.0%
! AGTGTTTGAATTATTATGGT+TGG + chr5.2:13534569-13534588 None:intergenic 25.0%
! ATAATCAAGATATTAACGTG+TGG - chr5.2:13533763-13533782 MS.gene64793:CDS 25.0%
! CATAATCAACTGCAAAAATA+TGG - chr5.2:13533855-13533874 MS.gene64793:intron 25.0%
! CATGATTTAATTACCTTGTT+TGG + chr5.2:13534371-13534390 None:intergenic 25.0%
! CTCATTCATTTCAATTGATA+AGG - chr5.2:13534632-13534651 MS.gene64793:intron 25.0%
! TAGATTGTTACTAAATCATG+AGG + chr5.2:13534257-13534276 None:intergenic 25.0%
! TTATGTACAAAAATGTTTCG+TGG - chr5.2:13533801-13533820 MS.gene64793:intron 25.0%
!!! AATTAATTTGTACCAAAGTG+TGG + chr5.2:13534545-13534564 None:intergenic 25.0%
!!! AGGAAGTGTTTGAATTATTA+TGG + chr5.2:13534573-13534592 None:intergenic 25.0%
!!! ATGTAGTTTGTTTTTGTCAA+AGG - chr5.2:13533937-13533956 MS.gene64793:CDS 25.0%
!!! GAGGTGTTTTATTTTGAATT+AGG - chr5.2:13534306-13534325 MS.gene64793:CDS 25.0%
!!! TTTTTTGTTTTGAGAAACAG+AGG - chr5.2:13533661-13533680 MS.gene64793:intron 25.0%
AAAACAGCTGTTGAATTATG+TGG - chr5.2:13533543-13533562 MS.gene64793:intron 30.0%
AAACAGGGAACTAATGAAAT+TGG - chr5.2:13534812-13534831 MS.gene64793:intron 30.0%
AAGAGTTATCAAACTTGAGA+GGG + chr5.2:13534707-13534726 None:intergenic 30.0%
AGAGTATGTTAAAGAAATCG+AGG - chr5.2:13533264-13533283 MS.gene64793:CDS 30.0%
ATATGTTGAACTCTATGCTA+AGG - chr5.2:13534899-13534918 MS.gene64793:intron 30.0%
CATAGAGTTCAACATATTTG+CGG + chr5.2:13534896-13534915 None:intergenic 30.0%
CATTTCAATTGATAAGGGTA+AGG - chr5.2:13534638-13534657 MS.gene64793:intron 30.0%
TAAGAGTTATCAAACTTGAG+AGG + chr5.2:13534708-13534727 None:intergenic 30.0%
TATATGTATTTCAGCTAGCT+GGG - chr5.2:13534114-13534133 MS.gene64793:CDS 30.0%
TGATTCCTTATAGAACCATT+TGG + chr5.2:13533489-13533508 None:intergenic 30.0%
TTATATGTATTTCAGCTAGC+TGG - chr5.2:13534113-13534132 MS.gene64793:CDS 30.0%
AAAGATCGCTCTAACTTTGA+AGG - chr5.2:13534666-13534685 MS.gene64793:intron 35.0%
ATATGTATTTCAGCTAGCTG+GGG - chr5.2:13534115-13534134 MS.gene64793:CDS 35.0%
ATGTACTAGTACCTTTCTTC+CGG + chr5.2:13534186-13534205 None:intergenic 35.0%
CACAAGAAACTCTCTGAATT+AGG - chr5.2:13535092-13535111 MS.gene64793:intron 35.0%
GTATGTTAAAGAAATCGAGG+AGG - chr5.2:13533267-13533286 MS.gene64793:CDS 35.0%
TTATCGTTCTCAATTGGCTA+AGG - chr5.2:13535133-13535152 MS.gene64793:CDS 35.0%
! AAGAGAGATCTTTTATCGCA+TGG - chr5.2:13534482-13534501 MS.gene64793:intron 35.0%
! AGAGAGATCTTTTATCGCAT+GGG - chr5.2:13534483-13534502 MS.gene64793:intron 35.0%
! TAATTACCTTGTTTGGCATC+TGG + chr5.2:13534364-13534383 None:intergenic 35.0%
AAAGACATTGTAGCTCTCTC+CGG - chr5.2:13534516-13534535 MS.gene64793:intron 40.0%
AAGGTCCGCATATGAAACTT+TGG + chr5.2:13533705-13533724 None:intergenic 40.0%
ACACCCCAAAGTTTCATATG+CGG - chr5.2:13533697-13533716 MS.gene64793:intron 40.0%
ACGACGCAAAAACAAGAACA+GGG - chr5.2:13533460-13533479 MS.gene64793:intron 40.0%
AGGTCCGCATATGAAACTTT+GGG + chr5.2:13533704-13533723 None:intergenic 40.0%
ATTGAAGCTTCCTACAGACA+AGG - chr5.2:13534848-13534867 MS.gene64793:intron 40.0%
ATTTATAGGTGGCATGATGC+TGG - chr5.2:13533432-13533451 MS.gene64793:intron 40.0%
CCAACTATTCACTTTGTTCC+CGG - chr5.2:13534164-13534183 MS.gene64793:intron 40.0%
GAATTATGTGGTCAGTGAGA+CGG - chr5.2:13533555-13533574 MS.gene64793:CDS 40.0%
GATATTAACGTGTGGAGTCA+TGG - chr5.2:13533771-13533790 MS.gene64793:CDS 40.0%
TACGACGCAAAAACAAGAAC+AGG - chr5.2:13533459-13533478 MS.gene64793:intron 40.0%
TCAACATATTTGCGGAATGC+AGG + chr5.2:13534888-13534907 None:intergenic 40.0%
TCATTGGAATCTCCACAAGA+AGG - chr5.2:13534331-13534350 MS.gene64793:intron 40.0%
TCTGAATTAGGCTTCAATCC+CGG - chr5.2:13535104-13535123 MS.gene64793:intron 40.0%
TGGCAGTTATCGTTCTCAAT+TGG - chr5.2:13535127-13535146 MS.gene64793:CDS 40.0%
TGTACTAGTACCTTTCTTCC+GGG + chr5.2:13534185-13534204 None:intergenic 40.0%
TTGAGAAACAGAGGAAGTGA+AGG - chr5.2:13533670-13533689 MS.gene64793:intron 40.0%
! GCTCTAACTTTGAAGGTCAA+TGG - chr5.2:13534673-13534692 MS.gene64793:intron 40.0%
CCGGGAACAAAGTGAATAGT+TGG + chr5.2:13534167-13534186 None:intergenic 45.0%
CGACGCAAAAACAAGAACAG+GGG - chr5.2:13533461-13533480 MS.gene64793:intron 45.0%
CTGAACCATGCTGCTAACAA+GGG - chr5.2:13533516-13533535 MS.gene64793:intron 45.0%
GACGCAAAAACAAGAACAGG+GGG - chr5.2:13533462-13533481 MS.gene64793:intron 45.0%
GGTCCGCATATGAAACTTTG+GGG + chr5.2:13533703-13533722 None:intergenic 45.0%
TACGCTAATCGTAGCATGAG+AGG + chr5.2:13533337-13533356 None:intergenic 45.0%
TCACTTTGTTCCCGGAAGAA+AGG - chr5.2:13534172-13534191 MS.gene64793:intron 45.0%
TGAGCTCAAGTAAGTAACCC+AGG + chr5.2:13535196-13535215 None:intergenic 45.0%
TTCATATGCGGACCTTTACC+AGG - chr5.2:13533709-13533728 MS.gene64793:intron 45.0%
TTGAGAACGATAACTGCCAC+CGG + chr5.2:13535126-13535145 None:intergenic 45.0%
! GGGGTCCAAATGGTTCTATA+AGG - chr5.2:13533481-13533500 MS.gene64793:intron 45.0%
! TACCTTGTTTGGCATCTGGA+AGG + chr5.2:13534360-13534379 None:intergenic 45.0%
! TCAACTAGAGCCTTGTCTGT+AGG + chr5.2:13534861-13534880 None:intergenic 45.0%
!! AAAATTAATTAAACAAATTA+AGG + chr5.2:13533587-13533606 None:intergenic 5.0%
ACAAGAACAGGGGGTCCAAA+TGG - chr5.2:13533471-13533490 MS.gene64793:intron 50.0%
ACCCAGGATCACAACAGTTG+AGG + chr5.2:13535180-13535199 None:intergenic 50.0%
ATTTCAGCTAGCTGGGGTTG+TGG - chr5.2:13534121-13534140 MS.gene64793:CDS 50.0%
CAATTGGCTAAGGCAGCGTT+AGG - chr5.2:13535143-13535162 MS.gene64793:CDS 50.0%
CCTCGCACGTGTGCTAAAAA+GGG - chr5.2:13534058-13534077 MS.gene64793:intron 50.0%
GAATTAGGCTTCAATCCCGG+TGG - chr5.2:13535107-13535126 MS.gene64793:intron 50.0%
GCCTCAACTGTTGTGATCCT+GGG - chr5.2:13535176-13535195 MS.gene64793:CDS 50.0%
GCTGAACCATGCTGCTAACA+AGG - chr5.2:13533515-13533534 MS.gene64793:intron 50.0%
TCAAGCCCTTGTTAGCAGCA+TGG + chr5.2:13533524-13533543 None:intergenic 50.0%
TCCTCGCACGTGTGCTAAAA+AGG - chr5.2:13534057-13534076 MS.gene64793:intron 50.0%
TGAGAACGATAACTGCCACC+GGG + chr5.2:13535125-13535144 None:intergenic 50.0%
TGCCTCAACTGTTGTGATCC+TGG - chr5.2:13535175-13535194 MS.gene64793:CDS 50.0%
TTATGTGGTCAGTGAGACGG+TGG - chr5.2:13533558-13533577 MS.gene64793:CDS 50.0%
TTGTACCAAAGTGTGGCCTC+CGG + chr5.2:13534538-13534557 None:intergenic 50.0%
CGCCTTCCAGATGCCAAACA+AGG - chr5.2:13534355-13534374 MS.gene64793:intron 55.0%
GACATTGTAGCTCTCTCCGG+AGG - chr5.2:13534519-13534538 MS.gene64793:intron 55.0%
GGCTAAGGCAGCGTTAGGAA+TGG - chr5.2:13535148-13535167 MS.gene64793:CDS 55.0%
GTTGTGGCTGTAGAGGTCAC+TGG - chr5.2:13534137-13534156 MS.gene64793:intron 55.0%
TCTGGAAGGCGACCTTCTTG+TGG + chr5.2:13534346-13534365 None:intergenic 55.0%
!! CCCTTTTTAGCACACGTGCG+AGG + chr5.2:13534061-13534080 None:intergenic 55.0%
AGCTGGGGTTGTGGCTGTAG+AGG - chr5.2:13534130-13534149 MS.gene64793:intron 60.0%
GTGGCTGTAGAGGTCACTGG+TGG - chr5.2:13534140-13534159 MS.gene64793:intron 60.0%
TCTCTCCGGAGGCCACACTT+TGG - chr5.2:13534530-13534549 MS.gene64793:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 13533241 13535232 13533241 ID=MS.gene64793
chr5.2 mRNA 13533241 13535232 13533241 ID=MS.gene64793.t1;Parent=MS.gene64793
chr5.2 exon 13535120 13535232 13535120 ID=MS.gene64793.t1.exon1;Parent=MS.gene64793.t1
chr5.2 CDS 13535120 13535232 13535120 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13534909 13535033 13534909 ID=MS.gene64793.t1.exon2;Parent=MS.gene64793.t1
chr5.2 CDS 13534909 13535033 13534909 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13534743 13534792 13534743 ID=MS.gene64793.t1.exon3;Parent=MS.gene64793.t1
chr5.2 CDS 13534743 13534792 13534743 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13534280 13534345 13534280 ID=MS.gene64793.t1.exon4;Parent=MS.gene64793.t1
chr5.2 CDS 13534280 13534345 13534280 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13534097 13534145 13534097 ID=MS.gene64793.t1.exon5;Parent=MS.gene64793.t1
chr5.2 CDS 13534097 13534145 13534097 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13533922 13534004 13533922 ID=MS.gene64793.t1.exon6;Parent=MS.gene64793.t1
chr5.2 CDS 13533922 13534004 13533922 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13533740 13533819 13533740 ID=MS.gene64793.t1.exon7;Parent=MS.gene64793.t1
chr5.2 CDS 13533740 13533819 13533740 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13533553 13533655 13533553 ID=MS.gene64793.t1.exon8;Parent=MS.gene64793.t1
chr5.2 CDS 13533553 13533655 13533553 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
chr5.2 exon 13533241 13533417 13533241 ID=MS.gene64793.t1.exon9;Parent=MS.gene64793.t1
chr5.2 CDS 13533241 13533417 13533241 ID=cds.MS.gene64793.t1;Parent=MS.gene64793.t1
Gene Sequence

>MS.gene64793

ATGGCTAAATATGCAGTTGATGCAGAGTATGTTAAAGAAATCGAGGAGGCTCGTCGTGATCTTCGTTCTCTTATCAACAATAAAAAATGTGCTCCTCTCATGCTACGATTAGCGTACGTTTGTTACATTAATTTCAACTTCACAAACCTTTTACTATAACATATACATAAATTGTATAATATATAGTATTGATTTATAGGTGGCATGATGCTGGTACATACGACGCAAAAACAAGAACAGGGGGTCCAAATGGTTCTATAAGGAATCAACAAGAGCTGAACCATGCTGCTAACAAGGGCTTGAAAACAGCTGTTGAATTATGTGGTCAGTGAGACGGTGGTGACCTTAATTTGTTTAATTAATTTTGACTTAAATTAATAATCTCCAATTTTTTGCTTATTAATCTTATTGTTATTAATATTTTTTGTTTTGAGAAACAGAGGAAGTGAAGGTTAAACACCCCAAAGTTTCATATGCGGACCTTTACCAGGTTATTTTATAATATTTTTTTTGTAATAATTTATAATCAAGATATTAACGTGTGGAGTCATGGAGTCATATTATGTACAAAAATGTTTCGTGGACATCGAGTTTTTCATACACTTGAACGTCTACATAATCAACTGCAAAAATATGGTTAATTCACTTGAATAAATGATTGGTTAATCTAGATTAAGTTAAAGATTATGGTTAGTCATGTAGTTTGTTTTTGTCAAAGGTTAGTCATGTAGTTGAATTAACCACAAAATTGAATATGAATTAAAATTAATAATTTATTCAACAGTATCAACCATATTTTTACACACGATTAATCGGTCCTCGCACGTGTGCTAAAAAGGGTGTTCACGTATGTATTATGTAAGAAAAAATATTTATATGTATTTCAGCTAGCTGGGGTTGTGGCTGTAGAGGTCACTGGTGGTCCAACTATTCACTTTGTTCCCGGAAGAAAGGTACTAGTACATTCATCATTCATCATTCAATGCAATACAAATCATGCTTTGTTTAATTAGCCTCATGATTTAGTAACAATCTAGCTTTATTATATTATTATAGTAGTATTATGAGGTGTTTTATTTTGAATTAGGATTCATTGGAATCTCCACAAGAAGGTCGCCTTCCAGATGCCAAACAAGGTAATTAAATCATGTTGTTCAATCTTGAAACTTAACTCAAAATTACGCAAAATAGTATTTCATTTATTATTGTATAAAAAACTATATTTCAGGTGCATCACATTTAAGAGAGATCTTTTATCGCATGGGTCTCACTGATAAAGACATTGTAGCTCTCTCCGGAGGCCACACTTTGGTACAAATTAATTACCAACCATAATAATTCAAACACTTCCTTTATTATATTTCTTGAAGAATATATAAATTTAATTTAATCTCATTCATTTCAATTGATAAGGGTAAGGCACATAAAGATCGCTCTAACTTTGAAGGTCAATGGACTAGAGACCCTCTCAAGTTTGATAACTCTTATTTTGTGTAAGATGATTTGTTTCATGTTAATTTCTTTATTTAAAATAATGTATGAAAGTTTGATATTTAATACAAGATTAACATAAACAGGGAACTAATGAAATTGGAATCAAAAGATTTATTGAAGCTTCCTACAGACAAGGCTCTAGTTGATGATCCTGCATTCCGCAAATATGTTGAACTCTATGCTAAGGTTATTGTCTTTACTATGTTTTCTTTTGTTCTCTATTTTTTTTTTTTTTTTGGTACAATCTTTTGTTCTCTATTTTATTTTATACTATAGTATTATGTATTTTTTGTGGCTAATAATGATTTTGAATTTTACTAGGATGAGAATGCATTTTTCAGAGATTATGCAACATCACACAAGAAACTCTCTGAATTAGGCTTCAATCCCGGTGGCAGTTATCGTTCTCAATTGGCTAAGGCAGCGTTAGGAATGGTTATTGCCTCAACTGTTGTGATCCTGGGTTACTTACTTGAGCTCAACAAAAAAATCAATTGA
Protein sequence

>MS.gene64793.t1

MAKYAVDAEYVKEIEEARRDLRSLINNKKCAPLMLRLAWHDAGTYDAKTRTGGPNGSIRNQQELNHAANKGLKTAVELCEEVKVKHPKVSYADLYQLAGVVAVEVTGGPTIHFVPGRKDSLESPQEGRLPDAKQGASHLREIFYRMGLTDKDIVALSGGHTLGKAHKDRSNFEGQWTRDPLKFDNSYFVELMKLESKDLLKLPTDKALVDDPAFRKYVELYAKDENAFFRDYATSHKKLSELGFNPGGSYRSQLAKAALGMVIASTVVILGYLLELNKKIN