Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64828.t1 | XP_003612270.1 | 95.6 | 182 | 8 | 0 | 1 | 182 | 4 | 185 | 3.90E-92 | 347.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64828.t1 | Q38853 | 58.7 | 143 | 55 | 2 | 44 | 182 | 40 | 182 | 2.1e-41 | 170.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64828.t1 | B7FGV4 | 95.6 | 182 | 8 | 0 | 1 | 182 | 4 | 185 | 2.8e-92 | 347.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058723 | MS.gene64828 | 0.802864 | 4.58E-49 | -1.69E-46 |
| MS.gene06111 | MS.gene64828 | 0.818704 | 1.71E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64828.t1 | MTR_5g023170 | 95.604 | 182 | 8 | 0 | 1 | 182 | 4 | 185 | 6.69e-130 | 362 |
| MS.gene64828.t1 | MTR_5g023170 | 95.570 | 158 | 7 | 0 | 1 | 158 | 4 | 161 | 5.88e-111 | 313 |
| MS.gene64828.t1 | MTR_5g022390 | 49.123 | 114 | 56 | 1 | 71 | 182 | 31 | 144 | 1.49e-31 | 111 |
| MS.gene64828.t1 | MTR_2g017630 | 42.857 | 112 | 63 | 1 | 72 | 182 | 12 | 123 | 6.99e-29 | 104 |
| MS.gene64828.t1 | MTR_8g075420 | 45.833 | 120 | 59 | 2 | 58 | 175 | 5 | 120 | 8.63e-28 | 101 |
| MS.gene64828.t1 | MTR_2g059890 | 39.200 | 125 | 71 | 2 | 59 | 182 | 3 | 123 | 9.05e-28 | 101 |
| MS.gene64828.t1 | MTR_8g075420 | 48.039 | 102 | 47 | 2 | 58 | 157 | 5 | 102 | 5.67e-22 | 85.9 |
| MS.gene64828.t1 | MTR_2g059890 | 40.404 | 99 | 54 | 2 | 58 | 155 | 2 | 96 | 6.89e-20 | 80.5 |
| MS.gene64828.t1 | MTR_2g059890 | 40.404 | 99 | 54 | 2 | 58 | 155 | 2 | 96 | 8.49e-20 | 80.5 |
| MS.gene64828.t1 | MTR_2g059890 | 40.816 | 98 | 53 | 2 | 59 | 155 | 3 | 96 | 2.66e-19 | 80.9 |
| MS.gene64828.t1 | MTR_5g022390 | 50.000 | 72 | 34 | 1 | 71 | 140 | 31 | 102 | 1.02e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64828.t1 | AT4G35770 | 58.741 | 143 | 55 | 2 | 44 | 182 | 40 | 182 | 3.04e-56 | 176 |
| MS.gene64828.t1 | AT5G66040 | 65.487 | 113 | 39 | 0 | 69 | 181 | 7 | 119 | 4.26e-51 | 160 |
| MS.gene64828.t1 | AT4G35770 | 57.143 | 119 | 47 | 2 | 44 | 158 | 40 | 158 | 5.25e-42 | 139 |
| MS.gene64828.t1 | AT4G35770 | 57.143 | 119 | 47 | 2 | 44 | 158 | 40 | 158 | 7.15e-42 | 139 |
| MS.gene64828.t1 | AT4G35770 | 56.436 | 101 | 40 | 2 | 44 | 140 | 40 | 140 | 2.14e-33 | 116 |
| MS.gene64828.t1 | AT5G66170 | 49.107 | 112 | 51 | 2 | 64 | 173 | 12 | 119 | 9.70e-31 | 109 |
| MS.gene64828.t1 | AT5G66170 | 48.246 | 114 | 51 | 3 | 64 | 173 | 12 | 121 | 8.66e-29 | 104 |
| MS.gene64828.t1 | AT2G21045 | 41.441 | 111 | 65 | 0 | 72 | 182 | 43 | 153 | 6.51e-27 | 100 |
| MS.gene64828.t1 | AT5G66170 | 50.515 | 97 | 42 | 2 | 64 | 158 | 12 | 104 | 5.66e-24 | 92.0 |
| MS.gene64828.t1 | AT5G66040 | 60.938 | 64 | 25 | 0 | 118 | 181 | 1 | 64 | 5.06e-23 | 87.4 |
| MS.gene64828.t1 | AT2G17850 | 40.385 | 104 | 60 | 1 | 72 | 173 | 34 | 137 | 9.96e-22 | 86.7 |
| MS.gene64828.t1 | AT4G35770 | 54.430 | 79 | 32 | 2 | 44 | 118 | 40 | 118 | 3.52e-21 | 84.3 |
| MS.gene64828.t1 | AT4G35770 | 54.430 | 79 | 32 | 2 | 44 | 118 | 40 | 118 | 3.52e-21 | 84.3 |
| MS.gene64828.t1 | AT2G17850 | 33.929 | 112 | 63 | 2 | 74 | 174 | 59 | 170 | 4.37e-16 | 72.8 |
| MS.gene64828.t1 | AT2G17850 | 39.326 | 89 | 52 | 1 | 72 | 158 | 34 | 122 | 2.20e-15 | 69.7 |
Find 40 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTCCCTTATTAAATT+TGG | 0.146508 | 5.1:+13987737 | None:intergenic |
| AAAATCTTCCAAATTTAATA+AGG | 0.178231 | 5.1:-13987745 | MS.gene64828:CDS |
| TCTAGCTGGCCATAAGTATT+TGG | 0.181385 | 5.1:-13987497 | MS.gene64828:CDS |
| ACCTTACATCCAAATACTTA+TGG | 0.228445 | 5.1:+13987488 | None:intergenic |
| GTGTGGTTTAAAGGGGAATT+TGG | 0.241136 | 5.1:-13987575 | MS.gene64828:CDS |
| AAGCACGATGTGTGGTTTAA+AGG | 0.244947 | 5.1:-13987584 | MS.gene64828:CDS |
| AGCACGATGTGTGGTTTAAA+GGG | 0.328888 | 5.1:-13987583 | MS.gene64828:CDS |
| GATCCAACTTTGTACATATA+AGG | 0.335693 | 5.1:+13987132 | None:intergenic |
| TATGCTGCTTGGACTCAAAA+TGG | 0.348576 | 5.1:-13986244 | MS.gene64828:CDS |
| AAATCTTCCAAATTTAATAA+GGG | 0.364373 | 5.1:-13987744 | MS.gene64828:CDS |
| ATTAGAGTGTGACCTTGTTA+TGG | 0.400999 | 5.1:+13987905 | None:intergenic |
| GGGAATTTGGAGGAAGTTGT+TGG | 0.404121 | 5.1:-13987562 | MS.gene64828:CDS |
| GCCATAAGTATTTGGATGTA+AGG | 0.427420 | 5.1:-13987489 | MS.gene64828:intron |
| TAGCTGGTGGTTATGCTGCT+TGG | 0.436274 | 5.1:-13986255 | MS.gene64828:CDS |
| ACCAGCTATGTCTGTGAGTC+CGG | 0.440393 | 5.1:+13986270 | None:intergenic |
| AACCAAAGTGTTCCAACTTC+CGG | 0.448542 | 5.1:-13987701 | MS.gene64828:intron |
| GTGTTCTGCCGTAGAATTAG+AGG | 0.450733 | 5.1:+13987930 | None:intergenic |
| TATATGTACAAAGTTGGATC+AGG | 0.472445 | 5.1:-13987129 | MS.gene64828:intron |
| TTTAATGCTGGACACGCTCC+TGG | 0.480736 | 5.1:-13987168 | MS.gene64828:CDS |
| ATACCTTATATGTACAAAGT+TGG | 0.502957 | 5.1:-13987135 | MS.gene64828:CDS |
| TGCATTGTATAGGGGTTCAC+CGG | 0.511879 | 5.1:-13986289 | MS.gene64828:intron |
| GCTCACGAGCTTCTTCTAGC+TGG | 0.514761 | 5.1:-13987511 | MS.gene64828:CDS |
| AGGGTTGTCAGCTTGGGAAA+AGG | 0.515357 | 5.1:-13986694 | MS.gene64828:CDS |
| AGCTCGTGAGCTACACGCAC+TGG | 0.517304 | 5.1:+13987523 | None:intergenic |
| TACCGGAAGTTGGAACACTT+TGG | 0.532325 | 5.1:+13987699 | None:intergenic |
| GTTCACGTCCTCTAATTCTA+CGG | 0.544162 | 5.1:-13987938 | MS.gene64828:CDS |
| ACCACGGAAGAGTTTAATGC+TGG | 0.548422 | 5.1:-13987180 | MS.gene64828:CDS |
| TGGTTTAAAGGGGAATTTGG+AGG | 0.552343 | 5.1:-13987572 | MS.gene64828:CDS |
| GCTTGGGAAAAGGTCTATGA+TGG | 0.555495 | 5.1:-13986684 | MS.gene64828:CDS |
| ACACGCACTGGCACTGAAGT+CGG | 0.559459 | 5.1:+13987535 | None:intergenic |
| ACCGGACTCACAGACATAGC+TGG | 0.570324 | 5.1:-13986271 | MS.gene64828:CDS |
| TAAGGTATGTTAATCGCACC+AGG | 0.610995 | 5.1:+13987150 | None:intergenic |
| GCAAGCGGCGGAGACATCAA+AGG | 0.618010 | 5.1:+13987965 | None:intergenic |
| GCACGATGTGTGGTTTAAAG+GGG | 0.620601 | 5.1:-13987582 | MS.gene64828:CDS |
| ATTGTGATTGTGCAGGACCA+CGG | 0.621639 | 5.1:-13987196 | MS.gene64828:intron |
| TCCAGCATTAAACTCTTCCG+TGG | 0.640037 | 5.1:+13987179 | None:intergenic |
| GGCAGAACACGACCATAACA+AGG | 0.641310 | 5.1:-13987917 | MS.gene64828:intron |
| ACGTGAACGAAAGCAAGCGG+CGG | 0.674129 | 5.1:+13987953 | None:intergenic |
| AGGACGTGAACGAAAGCAAG+CGG | 0.681028 | 5.1:+13987950 | None:intergenic |
| GGACTCACAGACATAGCTGG+TGG | 0.717723 | 5.1:-13986268 | MS.gene64828:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCTTCCAAATTTAATA+AGG | - | chr5.1:13986458-13986477 | MS.gene64828:intron | 15.0% |
| !! | AAATCTTCCAAATTTAATAA+GGG | - | chr5.1:13986459-13986478 | MS.gene64828:intron | 15.0% |
| !! | ATATGAATAGATTAGAAAAA+AGG | + | chr5.1:13987287-13987306 | None:intergenic | 15.0% |
| !! | CAAAACATTAGTATATTAAT+CGG | + | chr5.1:13986938-13986957 | None:intergenic | 15.0% |
| !! | AAATAACATACAAAATCTCA+TGG | + | chr5.1:13987444-13987463 | None:intergenic | 20.0% |
| !! | AGTATATAGATATAGAAGAA+TGG | + | chr5.1:13986328-13986347 | None:intergenic | 20.0% |
| !! | TAAAGTAACCAATTTAATCA+AGG | - | chr5.1:13986737-13986756 | MS.gene64828:intron | 20.0% |
| !! | TATTTAAGCCTTGATTAAAT+TGG | + | chr5.1:13986748-13986767 | None:intergenic | 20.0% |
| !! | TTGTAATATTCTTAGTGTTT+AGG | - | chr5.1:13987125-13987144 | MS.gene64828:intron | 20.0% |
| !!! | AGTTGTTTTGATTAATCTAA+TGG | + | chr5.1:13987202-13987221 | None:intergenic | 20.0% |
| !!! | CATAATAGTTTTGTAGTTTT+AGG | + | chr5.1:13986811-13986830 | None:intergenic | 20.0% |
| !!! | CGATTAATATACTAATGTTT+TGG | - | chr5.1:13986936-13986955 | MS.gene64828:intron | 20.0% |
| !!! | TTAACTTCTTGAAAATTTTG+AGG | - | chr5.1:13987864-13987883 | MS.gene64828:intron | 20.0% |
| !!! | TTATTTTTGTTTACACTTTC+AGG | + | chr5.1:13987772-13987791 | None:intergenic | 20.0% |
| !!! | TTTTCATCAATAATTAGTCT+TGG | - | chr5.1:13987804-13987823 | MS.gene64828:intron | 20.0% |
| ! | AGATCAAAAAGAGATCAAAT+TGG | - | chr5.1:13987247-13987266 | MS.gene64828:intron | 25.0% |
| ! | ATACCTTATATGTACAAAGT+TGG | - | chr5.1:13987068-13987087 | MS.gene64828:intron | 25.0% |
| ! | ATTAGAAAAAAGGACACTAA+TGG | + | chr5.1:13987277-13987296 | None:intergenic | 25.0% |
| ! | CATTAGCAGATGAATTAATT+TGG | + | chr5.1:13987476-13987495 | None:intergenic | 25.0% |
| ! | TAAGAGATATAGAATACTCT+TGG | - | chr5.1:13987176-13987195 | MS.gene64828:CDS | 25.0% |
| ! | TAGATTAATCAAAACAACTG+AGG | - | chr5.1:13987203-13987222 | MS.gene64828:intron | 25.0% |
| ! | TATTGATGAAAAAAGTAGCA+CGG | + | chr5.1:13987796-13987815 | None:intergenic | 25.0% |
| ! | TCTATGTCCCTTATTAAATT+TGG | + | chr5.1:13986469-13986488 | None:intergenic | 25.0% |
| !! | GTTAATAAAGTATCTATCAC+TGG | + | chr5.1:13987849-13987868 | None:intergenic | 25.0% |
| !!! | AATGTTTTGGAATTGTGATT+TGG | - | chr5.1:13986949-13986968 | MS.gene64828:intron | 25.0% |
| !!! | AATTGTTTTGCATTGTATAG+GGG | - | chr5.1:13987906-13987925 | MS.gene64828:intron | 25.0% |
| !!! | ACAATTGTTTTGCATTGTAT+AGG | - | chr5.1:13987904-13987923 | MS.gene64828:intron | 25.0% |
| !!! | CAATTGTTTTGCATTGTATA+GGG | - | chr5.1:13987905-13987924 | MS.gene64828:intron | 25.0% |
| AAACTCAAACAAGAAGTGAA+AGG | + | chr5.1:13987711-13987730 | None:intergenic | 30.0% | |
| AACTCAAACAAGAAGTGAAA+GGG | + | chr5.1:13987710-13987729 | None:intergenic | 30.0% | |
| AAGTATCTATCACTGGAAAT+TGG | + | chr5.1:13987842-13987861 | None:intergenic | 30.0% | |
| AATTATGTGTTCATGCATAC+AGG | - | chr5.1:13987325-13987344 | MS.gene64828:intron | 30.0% | |
| ACAATCACAATAAACAGGTA+TGG | + | chr5.1:13986998-13987017 | None:intergenic | 30.0% | |
| ACCTTACATCCAAATACTTA+TGG | + | chr5.1:13986718-13986737 | None:intergenic | 30.0% | |
| ATTATGTGTTCATGCATACA+GGG | - | chr5.1:13987326-13987345 | MS.gene64828:intron | 30.0% | |
| GATCCAACTTTGTACATATA+AGG | + | chr5.1:13987074-13987093 | None:intergenic | 30.0% | |
| TATATGTACAAAGTTGGATC+AGG | - | chr5.1:13987074-13987093 | MS.gene64828:intron | 30.0% | |
| ! | ATCTTCTTTTCTAAACTGTG+AGG | + | chr5.1:13987386-13987405 | None:intergenic | 30.0% |
| ! | GAACAGCAATTTTGTTAAAG+AGG | - | chr5.1:13987357-13987376 | MS.gene64828:intron | 30.0% |
| !! | CTAATGTTATTGCTTTTGCA+GGG | - | chr5.1:13987490-13987509 | MS.gene64828:CDS | 30.0% |
| !! | TCAACACTTTTTACACTTAC+CGG | + | chr5.1:13986524-13986543 | None:intergenic | 30.0% |
| ACTCAAACAAGAAGTGAAAG+GGG | + | chr5.1:13987709-13987728 | None:intergenic | 35.0% | |
| ATTAGAGTGTGACCTTGTTA+TGG | + | chr5.1:13986301-13986320 | None:intergenic | 35.0% | |
| CAACTGAGGTTTGATAGAAT+AGG | - | chr5.1:13987217-13987236 | MS.gene64828:intron | 35.0% | |
| GCCATAAGTATTTGGATGTA+AGG | - | chr5.1:13986714-13986733 | MS.gene64828:intron | 35.0% | |
| TAGCACTCAACTAAAATGCT+AGG | + | chr5.1:13987737-13987756 | None:intergenic | 35.0% | |
| ! | TTTTTACACTTACCGGAAGT+TGG | + | chr5.1:13986517-13986536 | None:intergenic | 35.0% |
| !! | GCTAATGTTATTGCTTTTGC+AGG | - | chr5.1:13987489-13987508 | MS.gene64828:intron | 35.0% |
| !!! | TAGCATTTTAGTTGAGTGCT+AGG | - | chr5.1:13987736-13987755 | MS.gene64828:CDS | 35.0% |
| !!! | TTTTGAGGTCAAAGCTTGTT+TGG | - | chr5.1:13987879-13987898 | MS.gene64828:intron | 35.0% |
| !!! | TTTTTTCAAAGCACGATGTG+TGG | - | chr5.1:13986611-13986630 | MS.gene64828:intron | 35.0% |
| AAGCACGATGTGTGGTTTAA+AGG | - | chr5.1:13986619-13986638 | MS.gene64828:intron | 40.0% | |
| ACATACAAAATCTCATGGCG+CGG | + | chr5.1:13987439-13987458 | None:intergenic | 40.0% | |
| AGCACGATGTGTGGTTTAAA+GGG | - | chr5.1:13986620-13986639 | MS.gene64828:intron | 40.0% | |
| CCTGCACAATCACAATAAAC+AGG | + | chr5.1:13987003-13987022 | None:intergenic | 40.0% | |
| CCTGTTTATTGTGATTGTGC+AGG | - | chr5.1:13987000-13987019 | MS.gene64828:intron | 40.0% | |
| CTCAAACAAGAAGTGAAAGG+GGG | + | chr5.1:13987708-13987727 | None:intergenic | 40.0% | |
| GTGTGGTTTAAAGGGGAATT+TGG | - | chr5.1:13986628-13986647 | MS.gene64828:intron | 40.0% | |
| GTTCACGTCCTCTAATTCTA+CGG | - | chr5.1:13986265-13986284 | MS.gene64828:CDS | 40.0% | |
| TAAGGTATGTTAATCGCACC+AGG | + | chr5.1:13987056-13987075 | None:intergenic | 40.0% | |
| TCTAGCTGGCCATAAGTATT+TGG | - | chr5.1:13986706-13986725 | MS.gene64828:intron | 40.0% | |
| TGGTTTAAAGGGGAATTTGG+AGG | - | chr5.1:13986631-13986650 | MS.gene64828:intron | 40.0% | |
| ! | AACCAAAGTGTTCCAACTTC+CGG | - | chr5.1:13986502-13986521 | MS.gene64828:intron | 40.0% |
| ! | GTATGGAAAGTCGTGAGTTT+TGG | + | chr5.1:13986981-13987000 | None:intergenic | 40.0% |
| ! | TATGCTGCTTGGACTCAAAA+TGG | - | chr5.1:13987959-13987978 | MS.gene64828:CDS | 40.0% |
| ACCACGGAAGAGTTTAATGC+TGG | - | chr5.1:13987023-13987042 | MS.gene64828:intron | 45.0% | |
| ATTGTGATTGTGCAGGACCA+CGG | - | chr5.1:13987007-13987026 | MS.gene64828:intron | 45.0% | |
| GCACGATGTGTGGTTTAAAG+GGG | - | chr5.1:13986621-13986640 | MS.gene64828:intron | 45.0% | |
| GCTTGGGAAAAGGTCTATGA+TGG | - | chr5.1:13987519-13987538 | MS.gene64828:CDS | 45.0% | |
| GGGAATTTGGAGGAAGTTGT+TGG | - | chr5.1:13986641-13986660 | MS.gene64828:intron | 45.0% | |
| GTGTTCTGCCGTAGAATTAG+AGG | + | chr5.1:13986276-13986295 | None:intergenic | 45.0% | |
| TACCGGAAGTTGGAACACTT+TGG | + | chr5.1:13986507-13986526 | None:intergenic | 45.0% | |
| TCCAGCATTAAACTCTTCCG+TGG | + | chr5.1:13987027-13987046 | None:intergenic | 45.0% | |
| TGCATTGTATAGGGGTTCAC+CGG | - | chr5.1:13987914-13987933 | MS.gene64828:intron | 45.0% | |
| TGGACTGAAAGTCGAGTACA+CGG | - | chr5.1:13986847-13986866 | MS.gene64828:CDS | 45.0% | |
| ! | TTTTGCAGGGTTGTCAGCTT+GGG | - | chr5.1:13987503-13987522 | MS.gene64828:CDS | 45.0% |
| !!! | TATGTAATTTTTAAATTTAT+TGG | - | chr5.1:13986827-13986846 | MS.gene64828:CDS | 5.0% |
| ACCAGCTATGTCTGTGAGTC+CGG | + | chr5.1:13987936-13987955 | None:intergenic | 50.0% | |
| AGGACGTGAACGAAAGCAAG+CGG | + | chr5.1:13986256-13986275 | None:intergenic | 50.0% | |
| AGGGTTGTCAGCTTGGGAAA+AGG | - | chr5.1:13987509-13987528 | MS.gene64828:CDS | 50.0% | |
| GGCAGAACACGACCATAACA+AGG | - | chr5.1:13986286-13986305 | MS.gene64828:intron | 50.0% | |
| TAGCTGGTGGTTATGCTGCT+TGG | - | chr5.1:13987948-13987967 | MS.gene64828:CDS | 50.0% | |
| TTTAATGCTGGACACGCTCC+TGG | - | chr5.1:13987035-13987054 | MS.gene64828:intron | 50.0% | |
| ! | CTTTTGCAGGGTTGTCAGCT+TGG | - | chr5.1:13987502-13987521 | MS.gene64828:CDS | 50.0% |
| AAAATCTCATGGCGCGGCGA+AGG | + | chr5.1:13987433-13987452 | None:intergenic | 55.0% | |
| ACCGGACTCACAGACATAGC+TGG | - | chr5.1:13987932-13987951 | MS.gene64828:CDS | 55.0% | |
| ACGTGAACGAAAGCAAGCGG+CGG | + | chr5.1:13986253-13986272 | None:intergenic | 55.0% | |
| GCTCACGAGCTTCTTCTAGC+TGG | - | chr5.1:13986692-13986711 | MS.gene64828:CDS | 55.0% | |
| GGACTCACAGACATAGCTGG+TGG | - | chr5.1:13987935-13987954 | MS.gene64828:CDS | 55.0% | |
| ! | ACACGCACTGGCACTGAAGT+CGG | + | chr5.1:13986671-13986690 | None:intergenic | 55.0% |
| AGCTCGTGAGCTACACGCAC+TGG | + | chr5.1:13986683-13986702 | None:intergenic | 60.0% | |
| GCAAGCGGCGGAGACATCAA+AGG | + | chr5.1:13986241-13986260 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 13986225 | 13988000 | 13986225 | ID=MS.gene64828 |
| chr5.1 | mRNA | 13986225 | 13988000 | 13986225 | ID=MS.gene64828.t1;Parent=MS.gene64828 |
| chr5.1 | exon | 13987918 | 13988000 | 13987918 | ID=MS.gene64828.t1.exon1;Parent=MS.gene64828.t1 |
| chr5.1 | CDS | 13987918 | 13988000 | 13987918 | ID=cds.MS.gene64828.t1;Parent=MS.gene64828.t1 |
| chr5.1 | exon | 13987702 | 13987779 | 13987702 | ID=MS.gene64828.t1.exon2;Parent=MS.gene64828.t1 |
| chr5.1 | CDS | 13987702 | 13987779 | 13987702 | ID=cds.MS.gene64828.t1;Parent=MS.gene64828.t1 |
| chr5.1 | exon | 13987490 | 13987603 | 13987490 | ID=MS.gene64828.t1.exon3;Parent=MS.gene64828.t1 |
| chr5.1 | CDS | 13987490 | 13987603 | 13987490 | ID=cds.MS.gene64828.t1;Parent=MS.gene64828.t1 |
| chr5.1 | exon | 13987130 | 13987203 | 13987130 | ID=MS.gene64828.t1.exon4;Parent=MS.gene64828.t1 |
| chr5.1 | CDS | 13987130 | 13987203 | 13987130 | ID=cds.MS.gene64828.t1;Parent=MS.gene64828.t1 |
| chr5.1 | exon | 13986808 | 13986878 | 13986808 | ID=MS.gene64828.t1.exon5;Parent=MS.gene64828.t1 |
| chr5.1 | CDS | 13986808 | 13986878 | 13986808 | ID=cds.MS.gene64828.t1;Parent=MS.gene64828.t1 |
| chr5.1 | exon | 13986661 | 13986714 | 13986661 | ID=MS.gene64828.t1.exon6;Parent=MS.gene64828.t1 |
| chr5.1 | CDS | 13986661 | 13986714 | 13986661 | ID=cds.MS.gene64828.t1;Parent=MS.gene64828.t1 |
| chr5.1 | exon | 13986225 | 13986299 | 13986225 | ID=MS.gene64828.t1.exon7;Parent=MS.gene64828.t1 |
| chr5.1 | CDS | 13986225 | 13986299 | 13986225 | ID=cds.MS.gene64828.t1;Parent=MS.gene64828.t1 |
| Gene Sequence |
| Protein sequence |
