AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06111

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06111.t1 MTR_8g099775 98.358 548 6 1 1 548 1 545 0.0 1115
MS.gene06111.t1 MTR_4g099110 45.098 510 263 9 19 522 13 511 1.28e-145 430
MS.gene06111.t1 MTR_5g013640 44.898 490 242 7 30 519 51 512 2.43e-144 427
MS.gene06111.t1 MTR_5g013620 45.708 466 234 6 83 541 90 543 4.37e-143 424
MS.gene06111.t1 MTR_6g477780 50.146 343 167 3 175 515 11 351 7.13e-120 358
MS.gene06111.t1 MTR_4g045667 36.842 437 265 7 83 514 14 444 1.59e-102 318
MS.gene06111.t1 MTR_2g089030 37.045 440 262 8 83 515 87 518 1.40e-100 316
MS.gene06111.t1 MTR_7g077410 35.657 502 307 10 18 512 200 692 2.89e-92 297
MS.gene06111.t1 MTR_2g020240 37.585 439 258 8 77 513 78 502 3.70e-90 287
MS.gene06111.t1 MTR_2g020240 37.302 378 222 7 137 513 4 367 4.47e-77 249
MS.gene06111.t1 MTR_5g026210 35.468 406 254 6 83 487 219 617 4.41e-73 245
MS.gene06111.t1 MTR_5g026210 37.544 285 173 4 83 366 219 499 4.88e-54 191
MS.gene06111.t1 MTR_6g057740 61.184 152 39 1 8 159 18 149 5.53e-45 156
MS.gene06111.t1 MTR_5g026210 37.705 244 148 3 83 325 219 459 7.91e-44 162
MS.gene06111.t1 MTR_7g078720 72.826 92 11 1 60 151 11 88 1.13e-30 115
MS.gene06111.t1 MTR_2g062780 71.111 90 12 1 62 151 16 91 1.66e-28 109
MS.gene06111.t1 MTR_6g477770 43.519 108 61 0 64 171 88 195 9.08e-23 96.7
MS.gene06111.t1 MTR_4g036105 72.973 74 6 1 78 151 48 107 4.29e-20 86.3
MS.gene06111.t1 MTR_2g451050 72.368 76 7 1 76 151 18 79 6.21e-20 84.7
MS.gene06111.t1 MTR_2g081160 87.273 55 7 0 76 130 54 108 1.92e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06111.t1 AT4G17090 45.363 496 260 8 27 519 30 517 5.06e-150 442
MS.gene06111.t1 AT3G23920 48.970 437 217 3 83 515 107 541 1.98e-148 439
MS.gene06111.t1 AT5G55700 39.597 447 255 6 78 514 88 529 5.49e-104 323
MS.gene06111.t1 AT4G15210 36.818 440 262 8 83 514 15 446 2.32e-102 318
MS.gene06111.t1 AT4G00490 38.799 433 256 6 83 512 96 522 3.47e-102 318
MS.gene06111.t1 AT4G15210 38.718 390 231 6 83 470 15 398 9.00e-97 300
MS.gene06111.t1 AT4G15210 36.409 401 240 7 121 514 1 393 1.76e-93 293
MS.gene06111.t1 AT4G15210 36.409 401 240 7 121 514 1 393 1.76e-93 293
MS.gene06111.t1 AT2G32290 34.615 442 275 8 83 518 79 512 7.52e-89 285
MS.gene06111.t1 AT2G45880 37.300 437 257 8 83 512 249 675 1.47e-84 277
MS.gene06111.t1 AT5G45300 37.913 393 237 5 83 474 254 640 1.53e-77 258
MS.gene06111.t1 AT5G45300 37.913 393 237 5 83 474 256 642 1.86e-77 258
MS.gene06111.t1 AT5G45300 37.913 393 237 5 83 474 270 656 2.12e-77 258
MS.gene06111.t1 AT5G18670 35.586 444 242 10 84 513 89 502 4.20e-75 248
MS.gene06111.t1 AT5G55700 39.359 343 194 6 181 514 29 366 2.44e-73 238

Find 147 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTTTGAACCACGAAAT+TGG 0.143509 4.2:+4001888 MS.gene06111:CDS
GAGAAGCTGAAACTATATTT+AGG 0.201163 4.2:+4001462 MS.gene06111:CDS
AAACGCCTCTGCAACAAATA+TGG 0.216700 4.2:+4001268 MS.gene06111:CDS
ACGAAGCCATATTTAGCTTT+TGG 0.256403 4.2:-4001066 None:intergenic
GTCTTCCCAAAAGCTAAATA+TGG 0.264456 4.2:+4001060 MS.gene06111:CDS
GTAGGATACCGCTTCCTCTA+TGG 0.302112 4.2:+4000680 MS.gene06111:intron
AGTCCACATATCAGCAAAAT+TGG 0.309679 4.2:+4001493 MS.gene06111:CDS
CTTGCTGCTGCTGGTGTAGA+AGG 0.323804 4.2:+3999337 MS.gene06111:CDS
AAGAAACCGCGAATCGGGTT+TGG 0.326549 4.2:-3999108 None:intergenic
TTGGTTTAGAGGGGAAGATT+TGG 0.351264 4.2:+3999281 MS.gene06111:CDS
AAACCTTCAGGGCTACAATC+TGG 0.351490 4.2:-4001692 None:intergenic
TTGAAAGCGCTTGCTGCTGC+TGG 0.359361 4.2:+3999328 MS.gene06111:CDS
CTACGCATCTTTAGTAAATA+CGG 0.369936 4.2:+4001611 MS.gene06111:CDS
AAGGTGTTGTGGTGGAGATT+TGG 0.370047 4.2:+3999356 MS.gene06111:CDS
AGAAACCGCGAATCGGGTTT+GGG 0.371994 4.2:-3999107 None:intergenic
AACGACAACATCATCGCTTT+CGG 0.380681 4.2:-3999307 None:intergenic
AGAAGCTGAAACTATATTTA+GGG 0.382766 4.2:+4001463 MS.gene06111:CDS
TGGGGAAATGGCGGTCCATT+TGG 0.384071 4.2:+4001302 MS.gene06111:CDS
AAGATCGTGGTGAATCTCAT+AGG 0.387121 4.2:-3999200 None:intergenic
GTCTCACAAATCGGGTAAAC+CGG 0.389454 4.2:-4001913 None:intergenic
GTTTCCTACAGAATTTAATC+TGG 0.391185 4.2:-4001963 None:intergenic
CATGTTTGAACCACGAAATT+GGG 0.391387 4.2:+4001889 MS.gene06111:CDS
GTGTTGTGGTGGAGATTTGG+TGG 0.392986 4.2:+3999359 MS.gene06111:CDS
CAGACATTCGTCTCACAAAT+CGG 0.392988 4.2:-4001922 None:intergenic
AGTTGTCTAAGAAAACCTTC+AGG 0.398518 4.2:-4001704 None:intergenic
TTACTAAAGATGCGTAGAAT+TGG 0.401779 4.2:-4001605 None:intergenic
CTTACGAAGTTGAATGAGAA+TGG 0.402055 4.2:-4001854 None:intergenic
CTCATTCAACTTCGTAAGAA+TGG 0.402837 4.2:+4001859 MS.gene06111:CDS
TGAATTAGCACATACCCATT+AGG 0.406372 4.2:-3999517 None:intergenic
AAAATCCGCATATGCTTGAA+TGG 0.412967 4.2:-4000821 None:intergenic
CGGAAGTGAGTGAAGGTGAA+AGG 0.414352 4.2:-3999079 None:intergenic
GGTGAAATCTGTTGGTTTAG+AGG 0.424555 4.2:+3999270 MS.gene06111:CDS
GTTGGACGAGTTAAATCGTT+GGG 0.428358 4.2:-3999049 None:intergenic
CAAATATGGGAAAGCGTGAA+TGG 0.440306 4.2:+4001282 MS.gene06111:CDS
GCCGGTGTTTGTGACACTTC+CGG 0.442531 4.2:+3999249 MS.gene06111:CDS
AACGCCTCTGCAACAAATAT+GGG 0.447146 4.2:+4001269 MS.gene06111:CDS
GTGCAGATTGGCATGGGTCC+CGG 0.447828 4.2:+4001013 MS.gene06111:CDS
CTCTGTGACATATCACTTGA+AGG 0.448345 4.2:+4001743 MS.gene06111:CDS
ATGGCTTCGTCTCGTGAACT+TGG 0.448401 4.2:+4001079 MS.gene06111:CDS
ACGGGAAGAAACCGCGAATC+GGG 0.450955 4.2:-3999113 None:intergenic
AGAGTTTCAGTGCTATGATA+AGG 0.451383 4.2:+4001102 MS.gene06111:CDS
CAGGGAGTGCAGATTGGCAT+GGG 0.455762 4.2:+4001007 MS.gene06111:intron
CAAAATTGGCTGCCATTCAC+TGG 0.455908 4.2:+4001507 MS.gene06111:CDS
GGAAAGCGTGAATGGGGAAA+TGG 0.458343 4.2:+4001290 MS.gene06111:CDS
AAATATGGGAAAGCGTGAAT+GGG 0.460533 4.2:+4001283 MS.gene06111:CDS
TCAACTGATTTGGATGATGA+TGG 0.461314 4.2:+4001776 MS.gene06111:CDS
TTAGAAACGAGGGTGGCTCT+TGG 0.461348 4.2:+4001366 MS.gene06111:CDS
GTATCGTGAACTTGTTATGA+TGG 0.466774 4.2:+3999426 MS.gene06111:CDS
TGTTGTGGTGGAGATTTGGT+GGG 0.469843 4.2:+3999360 MS.gene06111:CDS
CTGTCAGAAAATGCTAAATC+CGG 0.471791 4.2:-4000727 None:intergenic
GGAAGTGAGTGAAGGTGAAA+GGG 0.473744 4.2:-3999078 None:intergenic
CTCATGGTGATGATCCTAAT+GGG 0.476669 4.2:+3999503 MS.gene06111:CDS
CTAAAGAATTCAGAACGCTC+AGG 0.477015 4.2:-4001347 None:intergenic
GACGGGAAGAAACCGCGAAT+CGG 0.477036 4.2:-3999114 None:intergenic
AAAACTAGTTTCAAGAGTAC+TGG 0.477347 4.2:-4002039 None:intergenic
TAGGATACCGCTTCCTCTAT+GGG 0.478776 4.2:+4000681 MS.gene06111:intron
ATCAGCCTAGGGTTTATGAT+TGG 0.480305 4.2:+3999398 MS.gene06111:CDS
TAGCCGGCTGTTAACTCTGA+TGG 0.481850 4.2:-4001551 None:intergenic
AACTACGGTGGCTGCAGAAG+TGG 0.483328 4.2:+4001997 MS.gene06111:CDS
GGCTCTTGGAACATGCCATA+TGG 0.483956 4.2:+4001380 MS.gene06111:CDS
TTCAAGAGTACTGGTATAGC+TGG 0.484218 4.2:-4002030 None:intergenic
GTCAAACTTCCAGTGCCAAA+TGG 0.486962 4.2:-4001317 None:intergenic
GTGAAATCTGTTGGTTTAGA+GGG 0.488210 4.2:+3999271 MS.gene06111:CDS
ACTCATGGTGATGATCCTAA+TGG 0.489575 4.2:+3999502 MS.gene06111:CDS
CGAGATTGAACCGCCGGCAT+CGG 0.493628 4.2:-3999155 None:intergenic
GCAGGGAGTGCAGATTGGCA+TGG 0.495639 4.2:+4001006 MS.gene06111:intron
GGTTCAATCTCGCCGGAAAA+CGG 0.500082 4.2:+3999166 MS.gene06111:CDS
GGCTGTTAACTCTGATGGAT+GGG 0.500887 4.2:-4001546 None:intergenic
GCATGTCTGAGTACCATTCA+AGG 0.504578 4.2:-4001412 None:intergenic
AATATTGAATACATTTCCCT+CGG 0.508318 4.2:+4000763 MS.gene06111:CDS
AAATCCGCATATGCTTGAAT+GGG 0.510254 4.2:-4000820 None:intergenic
GTTTAGAGGGGAAGATTTGG+AGG 0.510688 4.2:+3999284 MS.gene06111:CDS
AACCTTCAGGGCTACAATCT+GGG 0.510835 4.2:-4001691 None:intergenic
TGAGATGAAGGAAGGTGAGA+AGG 0.511131 4.2:-3999023 None:intergenic
AGACATTCGTCTCACAAATC+GGG 0.511537 4.2:-4001921 None:intergenic
GTTGTCTAAGAAAACCTTCA+GGG 0.513719 4.2:-4001703 None:intergenic
TTACGAAGTTGAATGAGAAT+GGG 0.514956 4.2:-4001853 None:intergenic
CGGCTGTTAACTCTGATGGA+TGG 0.518375 4.2:-4001547 None:intergenic
GTTATGATGGCTTGCATGTG+TGG 0.519162 4.2:+3999439 MS.gene06111:CDS
TTTCATCAACATGGCACTCA+TGG 0.519586 4.2:+3999487 MS.gene06111:CDS
GGATTTAGAAGAGTTGAGAC+GGG 0.522871 4.2:-3999131 None:intergenic
TGATGAGATACAGAAAGATC+CGG 0.523575 4.2:+4000708 MS.gene06111:CDS
TTCCGGCGAGATTGAACCGC+CGG 0.526970 4.2:-3999161 None:intergenic
CTTTCCCATATTTGTTGCAG+AGG 0.528233 4.2:-4001273 None:intergenic
AACCCAGATTGTAGCCCTGA+AGG 0.531011 4.2:+4001689 MS.gene06111:CDS
GTTAAAAGTATTATAATAGC+CGG 0.531118 4.2:-4001567 None:intergenic
TTTGGTGGGGTGTTGTTGAA+AGG 0.531856 4.2:+3999374 MS.gene06111:CDS
TCTTCTAAATCCTCCGATGC+CGG 0.533038 4.2:+3999142 MS.gene06111:CDS
TCTCCGCAGCGTCGGAGACG+TGG 0.545759 4.2:+3999223 MS.gene06111:CDS
GGAGAACGTCCACGCAGCAC+AGG 0.549122 4.2:-4000799 None:intergenic
TTGTTGAAAGGAATCAGCCT+AGG 0.551424 4.2:+3999386 MS.gene06111:CDS
CGAGCCAGATTAAATTCTGT+AGG 0.552381 4.2:+4001959 MS.gene06111:CDS
GTAATGATAAAGCCAAGGTA+TGG 0.555777 4.2:-4000871 None:intergenic
GCGTCGGAGACGTGGATCGC+CGG 0.556399 4.2:+3999231 MS.gene06111:CDS
TTGAACCACGAAATTGGGAC+CGG 0.557825 4.2:+4001894 MS.gene06111:CDS
TTTGTGAGACGAATGTCTGC+TGG 0.561115 4.2:+4001926 MS.gene06111:CDS
AGATCGTGGTGAATCTCATA+GGG 0.561305 4.2:-3999199 None:intergenic
TCAAGCACCCATAGAGGAAG+CGG 0.562053 4.2:-4000688 None:intergenic
ACACTTCCGGTGAAATCTGT+TGG 0.566616 4.2:+3999262 MS.gene06111:CDS
AAGGTGAAAGGGAGACGAGT+TGG 0.570462 4.2:-3999067 None:intergenic
AATGGCGGTCCATTTGGCAC+TGG 0.570935 4.2:+4001308 MS.gene06111:CDS
ATCTCATCAAGCACCCATAG+AGG 0.572697 4.2:-4000694 None:intergenic
GTTGTGGTGGAGATTTGGTG+GGG 0.574564 4.2:+3999361 MS.gene06111:CDS
GTAAACCGGTCCCAATTTCG+TGG 0.574792 4.2:-4001899 None:intergenic
GATTGAACCGCCGGCATCGG+AGG 0.577246 4.2:-3999152 None:intergenic
TGCCGGCGGTTCAATCTCGC+CGG 0.579977 4.2:+3999159 MS.gene06111:CDS
ACTACGGTGGCTGCAGAAGT+GGG 0.580319 4.2:+4001998 MS.gene06111:CDS
AGGATTTAGAAGAGTTGAGA+CGG 0.586326 4.2:-3999132 None:intergenic
ATATTGAATACATTTCCCTC+GGG 0.586433 4.2:+4000764 MS.gene06111:CDS
AAACCTACAATTGAAAACTA+CGG 0.587152 4.2:+4001982 MS.gene06111:CDS
TCTAAATCCTCCGATGCCGG+CGG 0.588162 4.2:+3999145 MS.gene06111:CDS
CTAGGGTTTATGATTGGCGA+GGG 0.590762 4.2:+3999404 MS.gene06111:CDS
AGTTGGACGAGTTAAATCGT+TGG 0.595018 4.2:-3999050 None:intergenic
CATCCATCAGAGTTAACAGC+CGG 0.595227 4.2:+4001548 MS.gene06111:CDS
TTCTCCCATTCAAGCATATG+CGG 0.599622 4.2:+4000816 MS.gene06111:CDS
AGGATATCTTAGTTCACCAC+CGG 0.601710 4.2:-4001032 None:intergenic
TGTTGAAAGGAATCAGCCTA+GGG 0.602886 4.2:+3999387 MS.gene06111:CDS
CCTCGCCAATCATAAACCCT+AGG 0.603152 4.2:-3999403 None:intergenic
TGCTGGTGTAGAAGGTGTTG+TGG 0.603246 4.2:+3999345 MS.gene06111:CDS
TCAGACATGCTGCTACTGCA+TGG 0.606720 4.2:+4001425 MS.gene06111:CDS
CCTAGGGTTTATGATTGGCG+AGG 0.607719 4.2:+3999403 MS.gene06111:CDS
GTTCTTGCATTTCATCAACA+TGG 0.608340 4.2:+3999478 MS.gene06111:CDS
TTCTGAATTCTTTAGAAACG+AGG 0.609976 4.2:+4001355 MS.gene06111:CDS
TGTGACATAGTGCCAGTGAA+TGG 0.610416 4.2:-4001519 None:intergenic
ACCGGAAGTGTCACAAACAC+CGG 0.613731 4.2:-3999250 None:intergenic
TCTAAACCAACAGATTTCAC+CGG 0.614796 4.2:-3999268 None:intergenic
TCTGAATTCTTTAGAAACGA+GGG 0.620733 4.2:+4001356 MS.gene06111:CDS
TGGACGAGTTAAATCGTTGG+GGG 0.624921 4.2:-3999047 None:intergenic
TTACTGTAATGATAAAGCCA+AGG 0.630974 4.2:-4000876 None:intergenic
GAAGCTGAAACTATATTTAG+GGG 0.631641 4.2:+4001464 MS.gene06111:CDS
TGAAATCTGTTGGTTTAGAG+GGG 0.634831 4.2:+3999272 MS.gene06111:CDS
AATATGGGAAAGCGTGAATG+GGG 0.635783 4.2:+4001284 MS.gene06111:CDS
AAGCGTGAATGGGGAAATGG+CGG 0.635989 4.2:+4001293 MS.gene06111:CDS
TTGGACGAGTTAAATCGTTG+GGG 0.646278 4.2:-3999048 None:intergenic
GACGCTGCGGAGAAAGATCG+TGG 0.646699 4.2:-3999213 None:intergenic
ACGATCTTTCTCCGCAGCGT+CGG 0.649813 4.2:+3999215 MS.gene06111:CDS
TCAATCTCGCCGGAAAACGG+CGG 0.651635 4.2:+3999169 MS.gene06111:CDS
GGATGATGATGGATTCACTC+AGG 0.656015 4.2:+4001787 MS.gene06111:CDS
GATATTCTTCCTGTGCTGCG+TGG 0.661803 4.2:+4000790 MS.gene06111:CDS
CAGGAAGAATATCACACCCG+AGG 0.671745 4.2:-4000780 None:intergenic
TGGTGTAGAAGGTGTTGTGG+TGG 0.672535 4.2:+3999348 MS.gene06111:CDS
GAATTCTTTAGAAACGAGGG+TGG 0.674880 4.2:+4001359 MS.gene06111:CDS
GGATATCTTAGTTCACCACC+GGG 0.676959 4.2:-4001031 None:intergenic
AGGAAGAATATCACACCCGA+GGG 0.680047 4.2:-4000779 None:intergenic
GATCCACGTCTCCGACGCTG+CGG 0.684486 4.2:-3999226 None:intergenic
CAGATTGGCATGGGTCCCGG+TGG 0.697383 4.2:+4001016 MS.gene06111:CDS
CCTACAATTGAAAACTACGG+TGG 0.700747 4.2:+4001985 MS.gene06111:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATTAATAATGCAAAT+CGG - chr4.2:4001171-4001190 None:intergenic 15.0%
!! ATTATTCAAAATAAACCAAA+TGG - chr4.2:4000589-4000608 None:intergenic 15.0%
!! TTGTTGAATAAAAAACTTAT+AGG - chr4.2:4000524-4000543 None:intergenic 15.0%
!!! CAAATGAGATTTTAATTTTA+GGG - chr4.2:3999791-3999810 None:intergenic 15.0%
!!! CTATTATAATACTTTTAACA+GGG + chr4.2:4001571-4001590 MS.gene06111:CDS 15.0%
!!! TGAATAATTACTATTTTTGT+AGG + chr4.2:4000601-4000620 MS.gene06111:intron 15.0%
!! AAAATTAAAATCTCATTTGG+AGG + chr4.2:3999792-3999811 MS.gene06111:intron 20.0%
!! ACATTGAACTTCATAAATTT+AGG - chr4.2:3999663-3999682 None:intergenic 20.0%
!! ATACAATTACATTCCTATTT+AGG + chr4.2:4000077-4000096 MS.gene06111:intron 20.0%
!! CATTGAACTTCATAAATTTA+GGG - chr4.2:3999662-3999681 None:intergenic 20.0%
!! CCTAAAATTAAAATCTCATT+TGG + chr4.2:3999789-3999808 MS.gene06111:intron 20.0%
!! CTCAAAAATTGAATATTCAT+TGG - chr4.2:4000938-4000957 None:intergenic 20.0%
!! TATTCAATGTACATAAAAAG+TGG + chr4.2:4000206-4000225 MS.gene06111:intron 20.0%
!!! CAGTTTAATTGAATTTTGAA+TGG + chr4.2:3999613-3999632 MS.gene06111:intron 20.0%
!!! CCAAATGAGATTTTAATTTT+AGG - chr4.2:3999792-3999811 None:intergenic 20.0%
!!! GCTATTATAATACTTTTAAC+AGG + chr4.2:4001570-4001589 MS.gene06111:CDS 20.0%
!!! GTTAAAAGTATTATAATAGC+CGG - chr4.2:4001570-4001589 None:intergenic 20.0%
!!! GTTTTAAAAAGATAAGAGAA+AGG + chr4.2:3999979-3999998 MS.gene06111:intron 20.0%
!!! TCAAAATTTTTCAACTGATT+TGG + chr4.2:4001766-4001785 MS.gene06111:CDS 20.0%
! AAAATTTATTGCTGTGTTCT+AGG + chr4.2:4001132-4001151 MS.gene06111:intron 25.0%
! AAACCTACAATTGAAAACTA+CGG + chr4.2:4001982-4002001 MS.gene06111:CDS 25.0%
! AAAGAAAATGTAATGCAAGT+AGG + chr4.2:3999937-3999956 MS.gene06111:intron 25.0%
! AAATATTTATATACTCCCTC+CGG - chr4.2:4000252-4000271 None:intergenic 25.0%
! AATATTGAATACATTTCCCT+CGG + chr4.2:4000763-4000782 MS.gene06111:CDS 25.0%
! AGAAGCTGAAACTATATTTA+GGG + chr4.2:4001463-4001482 MS.gene06111:CDS 25.0%
! ATTGTAATTTAGATGTTGGA+TGG + chr4.2:4000415-4000434 MS.gene06111:intron 25.0%
! CCTATCAATAAACACATTAA+AGG - chr4.2:3999562-3999581 None:intergenic 25.0%
! CCTTTAATGTGTTTATTGAT+AGG + chr4.2:3999559-3999578 MS.gene06111:intron 25.0%
! TCAAGGAAAAATTTACCATA+TGG - chr4.2:4001398-4001417 None:intergenic 25.0%
! TGTGATTGTAATTTAGATGT+TGG + chr4.2:4000411-4000430 MS.gene06111:intron 25.0%
! TTAAGCGTATAAAACACTTT+AGG + chr4.2:4000311-4000330 MS.gene06111:intron 25.0%
!! AACTTTCCTTTTCTATTGTT+TGG + chr4.2:4001218-4001237 MS.gene06111:intron 25.0%
!! ATGGTAAATTTTTCCTTGAA+TGG + chr4.2:4001399-4001418 MS.gene06111:CDS 25.0%
!! ATGTCAAAATTTTACTCAGA+TGG + chr4.2:4001818-4001837 MS.gene06111:CDS 25.0%
!! TATAATACTTTTAACAGGGA+TGG + chr4.2:4001575-4001594 MS.gene06111:CDS 25.0%
!! TGTCAAAATTTTACTCAGAT+GGG + chr4.2:4001819-4001838 MS.gene06111:CDS 25.0%
!!! TCTTTACTTTTTCTAACGAA+GGG - chr4.2:3999922-3999941 None:intergenic 25.0%
!!! TTCTTTACTTTTTCTAACGA+AGG - chr4.2:3999923-3999942 None:intergenic 25.0%
AAAATGTAATGCAAGTAGGT+AGG + chr4.2:3999941-3999960 MS.gene06111:intron 30.0%
ACATGAGATGTAACCTAAAT+AGG - chr4.2:4000093-4000112 None:intergenic 30.0%
ACCAAGTAAAATGAACTACA+AGG - chr4.2:4000364-4000383 None:intergenic 30.0%
ATATTGAATACATTTCCCTC+GGG + chr4.2:4000764-4000783 MS.gene06111:CDS 30.0%
ATCATTACAGTAAGGTTCTA+TGG + chr4.2:4000886-4000905 MS.gene06111:intron 30.0%
ATGAAAGTTTGACAAAACCA+CGG + chr4.2:3999725-3999744 MS.gene06111:intron 30.0%
CTACGCATCTTTAGTAAATA+CGG + chr4.2:4001611-4001630 MS.gene06111:CDS 30.0%
CTATGGCTTATGATGATTTA+AGG + chr4.2:4000903-4000922 MS.gene06111:intron 30.0%
CTTCTCACTCGATAATAAAA+AGG - chr4.2:4000282-4000301 None:intergenic 30.0%
CTTTCACTTAGACAGATATA+CGG + chr4.2:4000446-4000465 MS.gene06111:intron 30.0%
GAAGCTGAAACTATATTTAG+GGG + chr4.2:4001464-4001483 MS.gene06111:CDS 30.0%
GAGAAGCTGAAACTATATTT+AGG + chr4.2:4001462-4001481 MS.gene06111:CDS 30.0%
GTATCATGATCCTAAAAGAT+AGG - chr4.2:4000061-4000080 None:intergenic 30.0%
GTTTCCTACAGAATTTAATC+TGG - chr4.2:4001966-4001985 None:intergenic 30.0%
TTACGAAGTTGAATGAGAAT+GGG - chr4.2:4001856-4001875 None:intergenic 30.0%
TTACTAAAGATGCGTAGAAT+TGG - chr4.2:4001608-4001627 None:intergenic 30.0%
TTACTGTAATGATAAAGCCA+AGG - chr4.2:4000879-4000898 None:intergenic 30.0%
! GGATTTTATGAGGGATTTTA+GGG + chr4.2:4000837-4000856 MS.gene06111:CDS 30.0%
! GTTTTGCTTATAATAGTGAC+CGG + chr4.2:4000230-4000249 MS.gene06111:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG - chr4.2:4000249-4000230 None:intergenic 30.0%
! TCCTTGTAGTTCATTTTACT+TGG + chr4.2:4000360-4000379 MS.gene06111:intron 30.0%
! TCTGAATTCTTTAGAAACGA+GGG + chr4.2:4001356-4001375 MS.gene06111:CDS 30.0%
! TGTAGTTCATTTTACTTGGT+GGG + chr4.2:4000364-4000383 MS.gene06111:intron 30.0%
! TTCTGAATTCTTTAGAAACG+AGG + chr4.2:4001355-4001374 MS.gene06111:CDS 30.0%
! TTGTAGTTCATTTTACTTGG+TGG + chr4.2:4000363-4000382 MS.gene06111:intron 30.0%
! TTTTCTTAGACAACTTTTGC+TGG + chr4.2:4001712-4001731 MS.gene06111:CDS 30.0%
! TTTTGCTTATAATAGTGACC+GGG - chr4.2:4000250-4000231 None:intergenic 30.0%
!! AAGATTTGCTCCTATCTTTT+AGG + chr4.2:4000048-4000067 MS.gene06111:intron 30.0%
!! TAACGCATGATTTTTGTTGT+TGG + chr4.2:4000388-4000407 MS.gene06111:intron 30.0%
!! TGTTTTGAGTATAGTCCATT+TGG + chr4.2:4000571-4000590 MS.gene06111:intron 30.0%
!! TTGGCTTTATCATTACAGTA+AGG + chr4.2:4000878-4000897 MS.gene06111:intron 30.0%
!!! AATTTTAGGGTACAGATTGA+CGG - chr4.2:3999778-3999797 None:intergenic 30.0%
AAAATCCGCATATGCTTGAA+TGG - chr4.2:4000824-4000843 None:intergenic 35.0%
AAATCCGCATATGCTTGAAT+GGG - chr4.2:4000823-4000842 None:intergenic 35.0%
AAGGATGAAACAATGGCAAT+GGG - chr4.2:4000345-4000364 None:intergenic 35.0%
AAGTGGCCAAACAATAGAAA+AGG - chr4.2:4001227-4001246 None:intergenic 35.0%
AATGTCTGAACATTCTACCT+GGG + chr4.2:4000542-4000561 MS.gene06111:intron 35.0%
ACATGTTTGAACCACGAAAT+TGG + chr4.2:4001888-4001907 MS.gene06111:CDS 35.0%
AGAGTTTCAGTGCTATGATA+AGG + chr4.2:4001102-4001121 MS.gene06111:CDS 35.0%
AGGATTTAGAAGAGTTGAGA+CGG - chr4.2:3999135-3999154 None:intergenic 35.0%
AGTCCACATATCAGCAAAAT+TGG + chr4.2:4001493-4001512 MS.gene06111:CDS 35.0%
AGTTGTCTAAGAAAACCTTC+AGG - chr4.2:4001707-4001726 None:intergenic 35.0%
CATGTTTGAACCACGAAATT+GGG + chr4.2:4001889-4001908 MS.gene06111:CDS 35.0%
CTCATTCAACTTCGTAAGAA+TGG + chr4.2:4001859-4001878 MS.gene06111:CDS 35.0%
CTGTCAGAAAATGCTAAATC+CGG - chr4.2:4000730-4000749 None:intergenic 35.0%
CTTACGAAGTTGAATGAGAA+TGG - chr4.2:4001857-4001876 None:intergenic 35.0%
GAACTACAAGGATGAAACAA+TGG - chr4.2:4000352-4000371 None:intergenic 35.0%
GTAATGATAAAGCCAAGGTA+TGG - chr4.2:4000874-4000893 None:intergenic 35.0%
GTCTTCCCAAAAGCTAAATA+TGG + chr4.2:4001060-4001079 MS.gene06111:CDS 35.0%
GTTCTTGCATTTCATCAACA+TGG + chr4.2:3999478-3999497 MS.gene06111:CDS 35.0%
GTTGTCTAAGAAAACCTTCA+GGG - chr4.2:4001706-4001725 None:intergenic 35.0%
TCTAAACCAACAGATTTCAC+CGG - chr4.2:3999271-3999290 None:intergenic 35.0%
TGAATTAGCACATACCCATT+AGG - chr4.2:3999520-3999539 None:intergenic 35.0%
TGATGAGATACAGAAAGATC+CGG + chr4.2:4000708-4000727 MS.gene06111:CDS 35.0%
TTAGAGAAGCAAGCATATAC+TGG - chr4.2:4001250-4001269 None:intergenic 35.0%
TTTCAGTGCTATGATAAGGT+TGG + chr4.2:4001106-4001125 MS.gene06111:intron 35.0%
TTTGCTTATAATAGTGACCG+GGG - chr4.2:4000251-4000232 None:intergenic 35.0%
! AAATATGGGAAAGCGTGAAT+GGG + chr4.2:4001283-4001302 MS.gene06111:CDS 35.0%
! AAGCATATGCGGATTTTATG+AGG + chr4.2:4000827-4000846 MS.gene06111:CDS 35.0%
! AATAGTGTATGCTGATAGTG+TGG + chr4.2:4000481-4000500 MS.gene06111:intron 35.0%
! AGCATATGCGGATTTTATGA+GGG + chr4.2:4000828-4000847 MS.gene06111:CDS 35.0%
! ATAGTGTATGCTGATAGTGT+GGG + chr4.2:4000482-4000501 MS.gene06111:intron 35.0%
! CGGATTTTATGAGGGATTTT+AGG + chr4.2:4000836-4000855 MS.gene06111:CDS 35.0%
! GTAACTCTGTTCATTTTGCA+GGG + chr4.2:4000989-4001008 MS.gene06111:intron 35.0%
! TCACGTAGCTTTTGTAGTAT+CGG - chr4.2:3999695-3999714 None:intergenic 35.0%
! TGTAACTCTGTTCATTTTGC+AGG + chr4.2:4000988-4001007 MS.gene06111:intron 35.0%
! TTAGCATTTTCTGACAGGTT+TGG + chr4.2:4000733-4000752 MS.gene06111:CDS 35.0%
!! GTATCGTGAACTTGTTATGA+TGG + chr4.2:3999426-3999445 MS.gene06111:CDS 35.0%
!! GTGAAATCTGTTGGTTTAGA+GGG + chr4.2:3999271-3999290 MS.gene06111:CDS 35.0%
!! TCAACTGATTTGGATGATGA+TGG + chr4.2:4001776-4001795 MS.gene06111:CDS 35.0%
!! TGAAATCTGTTGGTTTAGAG+GGG + chr4.2:3999272-3999291 MS.gene06111:CDS 35.0%
!!! ACGAAGCCATATTTAGCTTT+TGG - chr4.2:4001069-4001088 None:intergenic 35.0%
!!! CGAAGCCATATTTAGCTTTT+GGG - chr4.2:4001068-4001087 None:intergenic 35.0%
AAACGCCTCTGCAACAAATA+TGG + chr4.2:4001268-4001287 MS.gene06111:CDS 40.0%
AAAGTTTGACAAAACCACGG+TGG + chr4.2:3999728-3999747 MS.gene06111:intron 40.0%
AACGACAACATCATCGCTTT+CGG - chr4.2:3999310-3999329 None:intergenic 40.0%
AACGCCTCTGCAACAAATAT+GGG + chr4.2:4001269-4001288 MS.gene06111:CDS 40.0%
AAGATCGTGGTGAATCTCAT+AGG - chr4.2:3999203-3999222 None:intergenic 40.0%
AAGCAAGCATATACTGGAAG+TGG - chr4.2:4001244-4001263 None:intergenic 40.0%
AGACATTCGTCTCACAAATC+GGG - chr4.2:4001924-4001943 None:intergenic 40.0%
AGATCGTGGTGAATCTCATA+GGG - chr4.2:3999202-3999221 None:intergenic 40.0%
AGGATATCTTAGTTCACCAC+CGG - chr4.2:4001035-4001054 None:intergenic 40.0%
AGTTGGACGAGTTAAATCGT+TGG - chr4.2:3999053-3999072 None:intergenic 40.0%
ATCAGCCTAGGGTTTATGAT+TGG + chr4.2:3999398-3999417 MS.gene06111:CDS 40.0%
CAAGGATGAAACAATGGCAA+TGG - chr4.2:4000346-4000365 None:intergenic 40.0%
CAATGTCTGAACATTCTACC+TGG + chr4.2:4000541-4000560 MS.gene06111:intron 40.0%
CAGACATTCGTCTCACAAAT+CGG - chr4.2:4001925-4001944 None:intergenic 40.0%
CCTACAATTGAAAACTACGG+TGG + chr4.2:4001985-4002004 MS.gene06111:CDS 40.0%
CGAGCCAGATTAAATTCTGT+AGG + chr4.2:4001959-4001978 MS.gene06111:CDS 40.0%
CTAAAGAATTCAGAACGCTC+AGG - chr4.2:4001350-4001369 None:intergenic 40.0%
CTCTGTGACATATCACTTGA+AGG + chr4.2:4001743-4001762 MS.gene06111:CDS 40.0%
GGATTTAGAAGAGTTGAGAC+GGG - chr4.2:3999134-3999153 None:intergenic 40.0%
GTTGGACGAGTTAAATCGTT+GGG - chr4.2:3999052-3999071 None:intergenic 40.0%
TACTCAAAACAAGACTACCC+AGG - chr4.2:4000562-4000581 None:intergenic 40.0%
TGCAAGTAGGTAGGTATCTA+AGG + chr4.2:3999950-3999969 MS.gene06111:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4.2:4000234-4000253 MS.gene06111:intron 40.0%
TGTTGAAAGGAATCAGCCTA+GGG + chr4.2:3999387-3999406 MS.gene06111:CDS 40.0%
TTCTCCCATTCAAGCATATG+CGG + chr4.2:4000816-4000835 MS.gene06111:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4.2:4000233-4000252 MS.gene06111:intron 40.0%
TTGGACGAGTTAAATCGTTG+GGG - chr4.2:3999051-3999070 None:intergenic 40.0%
TTGGTTTAGAGGGGAAGATT+TGG + chr4.2:3999281-3999300 MS.gene06111:CDS 40.0%
TTGTTGAAAGGAATCAGCCT+AGG + chr4.2:3999386-3999405 MS.gene06111:CDS 40.0%
TTTCATCAACATGGCACTCA+TGG + chr4.2:3999487-3999506 MS.gene06111:CDS 40.0%
! AATATGGGAAAGCGTGAATG+GGG + chr4.2:4001284-4001303 MS.gene06111:CDS 40.0%
! ACTCATGGTGATGATCCTAA+TGG + chr4.2:3999502-3999521 MS.gene06111:CDS 40.0%
! AGGTAGGTATCTAAGGTTTG+TGG + chr4.2:3999957-3999976 MS.gene06111:intron 40.0%
! AGTTGATTCAACCTATGCTG+TGG + chr4.2:3999874-3999893 MS.gene06111:intron 40.0%
! CAAATATGGGAAAGCGTGAA+TGG + chr4.2:4001282-4001301 MS.gene06111:CDS 40.0%
! CAGCCAATTTTGCTGATATG+TGG - chr4.2:4001499-4001518 None:intergenic 40.0%
! CCACCGTAGTTTTCAATTGT+AGG - chr4.2:4001988-4002007 None:intergenic 40.0%
! CGGATTTAGCATTTTCTGAC+AGG + chr4.2:4000728-4000747 MS.gene06111:CDS 40.0%
! CTCATGGTGATGATCCTAAT+GGG + chr4.2:3999503-3999522 MS.gene06111:CDS 40.0%
! CTTTCCCATATTTGTTGCAG+AGG - chr4.2:4001276-4001295 None:intergenic 40.0%
! GAATTCTTTAGAAACGAGGG+TGG + chr4.2:4001359-4001378 MS.gene06111:CDS 40.0%
!! AGCTTTTGGGAAGACAATGA+AGG - chr4.2:4001055-4001074 None:intergenic 40.0%
!! ATTGCTGTGTTCTAGGAAAC+TGG + chr4.2:4001139-4001158 MS.gene06111:intron 40.0%
!! GGGATTTTAGGGACACTTTT+AGG + chr4.2:4000848-4000867 MS.gene06111:CDS 40.0%
!! GGTGAAATCTGTTGGTTTAG+AGG + chr4.2:3999270-3999289 MS.gene06111:CDS 40.0%
AAACCTTCAGGGCTACAATC+TGG - chr4.2:4001695-4001714 None:intergenic 45.0%
AACCTTCAGGGCTACAATCT+GGG - chr4.2:4001694-4001713 None:intergenic 45.0%
AAGCGGTATCCTACACAAGA+AGG - chr4.2:4000674-4000693 None:intergenic 45.0%
AAGGTTGTCCCTTCTTGTGT+AGG + chr4.2:4000662-4000681 MS.gene06111:intron 45.0%
ACACTTCCGGTGAAATCTGT+TGG + chr4.2:3999262-3999281 MS.gene06111:CDS 45.0%
AGCGGTATCCTACACAAGAA+GGG - chr4.2:4000673-4000692 None:intergenic 45.0%
AGGAAGAATATCACACCCGA+GGG - chr4.2:4000782-4000801 None:intergenic 45.0%
ATAATCATTGTGTGCCACCG+TGG - chr4.2:3999745-3999764 None:intergenic 45.0%
ATCTCATCAAGCACCCATAG+AGG - chr4.2:4000697-4000716 None:intergenic 45.0%
CAAAATTGGCTGCCATTCAC+TGG + chr4.2:4001507-4001526 MS.gene06111:CDS 45.0%
CATCCATCAGAGTTAACAGC+CGG + chr4.2:4001548-4001567 MS.gene06111:CDS 45.0%
CTAGGGTTTATGATTGGCGA+GGG + chr4.2:3999404-3999423 MS.gene06111:CDS 45.0%
CTTAAGCCTCAGACTCTAGA+AGG + chr4.2:4000643-4000662 MS.gene06111:intron 45.0%
GCATGTCTGAGTACCATTCA+AGG - chr4.2:4001415-4001434 None:intergenic 45.0%
GGAAGTGAGTGAAGGTGAAA+GGG - chr4.2:3999081-3999100 None:intergenic 45.0%
GGATATCTTAGTTCACCACC+GGG - chr4.2:4001034-4001053 None:intergenic 45.0%
GTCAAACTTCCAGTGCCAAA+TGG - chr4.2:4001320-4001339 None:intergenic 45.0%
GTCTCACAAATCGGGTAAAC+CGG - chr4.2:4001916-4001935 None:intergenic 45.0%
GTTACATCTCATGTACTCCC+CGG + chr4.2:4000099-4000118 MS.gene06111:intron 45.0%
GTTTAGAGGGGAAGATTTGG+AGG + chr4.2:3999284-3999303 MS.gene06111:CDS 45.0%
TAGGATACCGCTTCCTCTAT+GGG + chr4.2:4000681-4000700 MS.gene06111:intron 45.0%
TCTTCTAAATCCTCCGATGC+CGG + chr4.2:3999142-3999161 MS.gene06111:CDS 45.0%
TGAGATGAAGGAAGGTGAGA+AGG - chr4.2:3999026-3999045 None:intergenic 45.0%
TGGACGAGTTAAATCGTTGG+GGG - chr4.2:3999050-3999069 None:intergenic 45.0%
TGTGACATAGTGCCAGTGAA+TGG - chr4.2:4001522-4001541 None:intergenic 45.0%
TTACCTTCAAGCCACAGCAT+AGG - chr4.2:3999888-3999907 None:intergenic 45.0%
TTGAACCACGAAATTGGGAC+CGG + chr4.2:4001894-4001913 MS.gene06111:CDS 45.0%
TTTGTGAGACGAATGTCTGC+TGG + chr4.2:4001926-4001945 MS.gene06111:CDS 45.0%
! AAAAACCCAAACCCGATTCG+CGG + chr4.2:3999102-3999121 MS.gene06111:CDS 45.0%
! GACACTTTTAGGCCATACCT+TGG + chr4.2:4000859-4000878 MS.gene06111:CDS 45.0%
! GGCTGTTAACTCTGATGGAT+GGG - chr4.2:4001549-4001568 None:intergenic 45.0%
! GTTATGATGGCTTGCATGTG+TGG + chr4.2:3999439-3999458 MS.gene06111:CDS 45.0%
! TGTTGTGGTGGAGATTTGGT+GGG + chr4.2:3999360-3999379 MS.gene06111:CDS 45.0%
!! AAGGTGTTGTGGTGGAGATT+TGG + chr4.2:3999356-3999375 MS.gene06111:CDS 45.0%
!! ATTTTGCAGGGAGTGCAGAT+TGG + chr4.2:4001001-4001020 MS.gene06111:intron 45.0%
!! CGAATCGGGTTTGGGTTTTT+CGG - chr4.2:3999102-3999121 None:intergenic 45.0%
!! GGATGATGATGGATTCACTC+AGG + chr4.2:4001787-4001806 MS.gene06111:CDS 45.0%
!! GGTTTTTCGGAAGTGAGTGA+AGG - chr4.2:3999089-3999108 None:intergenic 45.0%
!! TTTGGTGGGGTGTTGTTGAA+AGG + chr4.2:3999374-3999393 MS.gene06111:CDS 45.0%
AACCCAGATTGTAGCCCTGA+AGG + chr4.2:4001689-4001708 MS.gene06111:CDS 50.0%
AAGAAACCGCGAATCGGGTT+TGG - chr4.2:3999111-3999130 None:intergenic 50.0%
AAGCGTGAATGGGGAAATGG+CGG + chr4.2:4001293-4001312 MS.gene06111:CDS 50.0%
AAGGTGAAAGGGAGACGAGT+TGG - chr4.2:3999070-3999089 None:intergenic 50.0%
AGAAACCGCGAATCGGGTTT+GGG - chr4.2:3999110-3999129 None:intergenic 50.0%
ATCGTTGGGGGTTGAGATGA+AGG - chr4.2:3999038-3999057 None:intergenic 50.0%
ATGGCTTCGTCTCGTGAACT+TGG + chr4.2:4001079-4001098 MS.gene06111:CDS 50.0%
CAACCTATGCTGTGGCTTGA+AGG + chr4.2:3999882-3999901 MS.gene06111:intron 50.0%
CAGGAAGAATATCACACCCG+AGG - chr4.2:4000783-4000802 None:intergenic 50.0%
CCTAGGGTTTATGATTGGCG+AGG + chr4.2:3999403-3999422 MS.gene06111:CDS 50.0%
CCTCGCCAATCATAAACCCT+AGG - chr4.2:3999406-3999425 None:intergenic 50.0%
CGGAAGTGAGTGAAGGTGAA+AGG - chr4.2:3999082-3999101 None:intergenic 50.0%
CGGCTGTTAACTCTGATGGA+TGG - chr4.2:4001550-4001569 None:intergenic 50.0%
GATATTCTTCCTGTGCTGCG+TGG + chr4.2:4000790-4000809 MS.gene06111:CDS 50.0%
GGCTCTTGGAACATGCCATA+TGG + chr4.2:4001380-4001399 MS.gene06111:CDS 50.0%
GGTTCAATCTCGCCGGAAAA+CGG + chr4.2:3999166-3999185 MS.gene06111:CDS 50.0%
GTAAACCGGTCCCAATTTCG+TGG - chr4.2:4001902-4001921 None:intergenic 50.0%
GTAGGATACCGCTTCCTCTA+TGG + chr4.2:4000680-4000699 MS.gene06111:intron 50.0%
TAGCCGGCTGTTAACTCTGA+TGG - chr4.2:4001554-4001573 None:intergenic 50.0%
TCAAGCACCCATAGAGGAAG+CGG - chr4.2:4000691-4000710 None:intergenic 50.0%
TCAGACATGCTGCTACTGCA+TGG + chr4.2:4001425-4001444 MS.gene06111:CDS 50.0%
TTAGAAACGAGGGTGGCTCT+TGG + chr4.2:4001366-4001385 MS.gene06111:CDS 50.0%
TTGGGGGTTGAGATGAAGGA+AGG - chr4.2:3999034-3999053 None:intergenic 50.0%
! GGAAAGCGTGAATGGGGAAA+TGG + chr4.2:4001290-4001309 MS.gene06111:CDS 50.0%
! GTGTTGTGGTGGAGATTTGG+TGG + chr4.2:3999359-3999378 MS.gene06111:CDS 50.0%
!! ACCGGAAGTGTCACAAACAC+CGG - chr4.2:3999253-3999272 None:intergenic 50.0%
!! GACAACTTTTGCTGGCTGCT+AGG + chr4.2:4001720-4001739 MS.gene06111:CDS 50.0%
!! GGACAACCTTCTAGAGTCTG+AGG - chr4.2:4000652-4000671 None:intergenic 50.0%
!! GTTGTGGTGGAGATTTGGTG+GGG + chr4.2:3999361-3999380 MS.gene06111:CDS 50.0%
!! TGCTGGTGTAGAAGGTGTTG+TGG + chr4.2:3999345-3999364 MS.gene06111:CDS 50.0%
!! TGGTGTAGAAGGTGTTGTGG+TGG + chr4.2:3999348-3999367 MS.gene06111:CDS 50.0%
AACTACGGTGGCTGCAGAAG+TGG + chr4.2:4001997-4002016 MS.gene06111:CDS 55.0%
AATGGCGGTCCATTTGGCAC+TGG + chr4.2:4001308-4001327 MS.gene06111:CDS 55.0%
ACGATCTTTCTCCGCAGCGT+CGG + chr4.2:3999215-3999234 MS.gene06111:CDS 55.0%
ACGGGAAGAAACCGCGAATC+GGG - chr4.2:3999116-3999135 None:intergenic 55.0%
ACTACGGTGGCTGCAGAAGT+GGG + chr4.2:4001998-4002017 MS.gene06111:CDS 55.0%
CTTGCTGCTGCTGGTGTAGA+AGG + chr4.2:3999337-3999356 MS.gene06111:CDS 55.0%
GACGGGAAGAAACCGCGAAT+CGG - chr4.2:3999117-3999136 None:intergenic 55.0%
GCCGGTGTTTGTGACACTTC+CGG + chr4.2:3999249-3999268 MS.gene06111:CDS 55.0%
TCAATCTCGCCGGAAAACGG+CGG + chr4.2:3999169-3999188 MS.gene06111:CDS 55.0%
TCTAAATCCTCCGATGCCGG+CGG + chr4.2:3999145-3999164 MS.gene06111:CDS 55.0%
TGGGGAAATGGCGGTCCATT+TGG + chr4.2:4001302-4001321 MS.gene06111:CDS 55.0%
! CAGGGAGTGCAGATTGGCAT+GGG + chr4.2:4001007-4001026 MS.gene06111:intron 55.0%
!! GGAACTTCTCCGCCGTTTTC+CGG - chr4.2:3999181-3999200 None:intergenic 55.0%
!! TTGAAAGCGCTTGCTGCTGC+TGG + chr4.2:3999328-3999347 MS.gene06111:CDS 55.0%
CGAGATTGAACCGCCGGCAT+CGG - chr4.2:3999158-3999177 None:intergenic 60.0%
GACGCTGCGGAGAAAGATCG+TGG - chr4.2:3999216-3999235 None:intergenic 60.0%
GTGCAGATTGGCATGGGTCC+CGG + chr4.2:4001013-4001032 MS.gene06111:CDS 60.0%
TTCCGGCGAGATTGAACCGC+CGG - chr4.2:3999164-3999183 None:intergenic 60.0%
! GCAGGGAGTGCAGATTGGCA+TGG + chr4.2:4001006-4001025 MS.gene06111:intron 60.0%
CAGATTGGCATGGGTCCCGG+TGG + chr4.2:4001016-4001035 MS.gene06111:CDS 65.0%
GATCCACGTCTCCGACGCTG+CGG - chr4.2:3999229-3999248 None:intergenic 65.0%
GGAGAACGTCCACGCAGCAC+AGG - chr4.2:4000802-4000821 None:intergenic 65.0%
TGCCGGCGGTTCAATCTCGC+CGG + chr4.2:3999159-3999178 MS.gene06111:CDS 65.0%
! GATTGAACCGCCGGCATCGG+AGG - chr4.2:3999155-3999174 None:intergenic 65.0%
GCGTCGGAGACGTGGATCGC+CGG + chr4.2:3999231-3999250 MS.gene06111:CDS 70.0%
! TCTCCGCAGCGTCGGAGACG+TGG + chr4.2:3999223-3999242 MS.gene06111:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 3999004 4002051 3999004 ID=MS.gene06111
chr4.2 mRNA 3999004 4002051 3999004 ID=MS.gene06111.t1;Parent=MS.gene06111
chr4.2 exon 3999004 3999524 3999004 ID=MS.gene06111.t1.exon1;Parent=MS.gene06111.t1
chr4.2 CDS 3999004 3999524 3999004 ID=cds.MS.gene06111.t1;Parent=MS.gene06111.t1
chr4.2 exon 4000684 4000894 4000684 ID=MS.gene06111.t1.exon2;Parent=MS.gene06111.t1
chr4.2 CDS 4000684 4000894 4000684 ID=cds.MS.gene06111.t1;Parent=MS.gene06111.t1
chr4.2 exon 4001010 4001123 4001010 ID=MS.gene06111.t1.exon3;Parent=MS.gene06111.t1
chr4.2 CDS 4001010 4001123 4001010 ID=cds.MS.gene06111.t1;Parent=MS.gene06111.t1
chr4.2 exon 4001251 4002051 4001251 ID=MS.gene06111.t1.exon4;Parent=MS.gene06111.t1
chr4.2 CDS 4001251 4002051 4001251 ID=cds.MS.gene06111.t1;Parent=MS.gene06111.t1
Gene Sequence

>MS.gene06111

ATGGCGATCTCATCACAATCCTTCTCACCTTCCTTCATCTCAACCCCCAACGATTTAACTCGTCCAACTCGTCTCCCTTTCACCTTCACTCACTTCCGAAAAACCCAAACCCGATTCGCGGTTTCTTCCCGTCTCAACTCTTCTAAATCCTCCGATGCCGGCGGTTCAATCTCGCCGGAAAACGGCGGAGAAGTTCCCTATGAGATTCACCACGATCTTTCTCCGCAGCGTCGGAGACGTGGATCGCCGGTGTTTGTGACACTTCCGGTGAAATCTGTTGGTTTAGAGGGGAAGATTTGGAGGCCGAAAGCGATGATGTTGTCGTTGAAAGCGCTTGCTGCTGCTGGTGTAGAAGGTGTTGTGGTGGAGATTTGGTGGGGTGTTGTTGAAAGGAATCAGCCTAGGGTTTATGATTGGCGAGGGTATCGTGAACTTGTTATGATGGCTTGCATGTGTGGACTTAAAGTTCGTGCTGTTCTTGCATTTCATCAACATGGCACTCATGGTGATGATCCTAATGGGTATGTGCTAATTCAATCTTTTGTTTTCTTTAAGCCTTTAATGTGTTTATTGATAGGTTTAGTGTACATTTAAGTGAGATTTTGTTAACAGTTTAATTGAATTTTGAATGGAAACATTTTTGTTAATGTTTTTACCCTAAATTTATGAAGTTCAATGTAACATATGTCCGATACTACAAAAGCTACGTGAAGTCAGATTGATGAAAGTTTGACAAAACCACGGTGGCACACAATGATTATGTCAAACTCACCGTCAATCTGTACCCTAAAATTAAAATCTCATTTGGAGGAAGCAAAATAAATAAACACACACTTAGTTGAGATAGATATAATTAGCTTCTTGTCAATCAGTTGATTCAACCTATGCTGTGGCTTGAAGGTAAGTTTATTACGTCCCTTCGTTAGAAAAAGTAAAGAAAATGTAATGCAAGTAGGTAGGTATCTAAGGTTTGTGGTTTTAAAAAGATAAGAGAAAGGTTGTTTAATTTTAGTCAACTGTTCAGATATTGATATTGATTATGATAAGATTTGCTCCTATCTTTTAGGATCATGATACAATTACATTCCTATTTAGGTTACATCTCATGTACTCCCCGGTCACTATTATAAGCAAAACTCTACTTTTTAGATACATTGAATAATTAATGTATCTAGTCTTTATTGTAGACTAGATACATTAATTATTCAATGTACATAAAAAGTGGAGTTTTGCTTATAATAGTGACCGGAGGGAGTATATAAATATTTGTACTTACCTTTTTATTATCGAGTGAGAAGTATTGATATTTAAGCGTATAAAACACTTTAGGTCTCTTAGCCCATTGCCATTGTTTCATCCTTGTAGTTCATTTTACTTGGTGGGATAACGCATGATTTTTGTTGTTGGTGTGATTGTAATTTAGATGTTGGATGGTTGCTTGTCTTTCACTTAGACAGATATACGGAACATATTTTTCAATAGTGTATGCTGATAGTGTGGGAAAGTGACAAATAGAGCCTATAAGTTTTTTATTCAACAATGTCTGAACATTCTACCTGGGTAGTCTTGTTTTGAGTATAGTCCATTTGGTTTATTTTGAATAATTACTATTTTTGTAGGTAGCTATTTTTTTTCTTGTCTTAAGCCTCAGACTCTAGAAGGTTGTCCCTTCTTGTGTAGGATACCGCTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATCCGGATTTAGCATTTTCTGACAGGTTTGGAAGAAGAAATATTGAATACATTTCCCTCGGGTGTGATATTCTTCCTGTGCTGCGTGGACGTTCTCCCATTCAAGCATATGCGGATTTTATGAGGGATTTTAGGGACACTTTTAGGCCATACCTTGGCTTTATCATTACAGTAAGGTTCTATGGCTTATGATGATTTAAGGATGCTTAGTCCAATGAATATTCAATTTTTGAGCTATCGTTATCAAATGTTTATAGTAGTTTGTGTAACTCTGTTCATTTTGCAGGGAGTGCAGATTGGCATGGGTCCCGGTGGTGAACTAAGATATCCTTCATTGTCTTCCCAAAAGCTAAATATGGCTTCGTCTCGTGAACTTGGAGAGTTTCAGTGCTATGATAAGGTTGGTTGAAAATTTATTGCTGTGTTCTAGGAAACTGGTGATAACCGATTTGCATTATTAATATTGTTGTGTTATTAGTAATAGTATCATGTCGAACTTTCCTTTTCTATTGTTTGGCCACTTCCAGTATATGCTTGCTTCTCTAAACGCCTCTGCAACAAATATGGGAAAGCGTGAATGGGGAAATGGCGGTCCATTTGGCACTGGAAGTTTGACGAAAAATCCTGAGCGTTCTGAATTCTTTAGAAACGAGGGTGGCTCTTGGAACATGCCATATGGTAAATTTTTCCTTGAATGGTACTCAGACATGCTGCTACTGCATGGAGAGAGAATTTGTAGAGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCACATATCAGCAAAATTGGCTGCCATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACAGCCGGCTATTATAATACTTTTAACAGGGATGGATACTTACCAATTCTACGCATCTTTAGTAAATACGGATTCTCGATGTGCTGCTCTTGTTTTGAAATGCAAGATGTAGTTATGAATAAGATCAACCCAGATTGTAGCCCTGAAGGTTTTCTTAGACAACTTTTGCTGGCTGCTAGGCTCTGTGACATATCACTTGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGGATTCACTCAGGTGCTGAAGATGTCAAAATTTTACTCAGATGGGATTGAGAGACGCCCATTCTCATTCAACTTCGTAAGAATGGACAAAAACATGTTTGAACCACGAAATTGGGACCGGTTTACCCGATTTGTGAGACGAATGTCTGCTGGAAACATGTTTCGAGCCAGATTAAATTCTGTAGGAAACCTACAATTGAAAACTACGGTGGCTGCAGAAGTGGGATTGTTATACCAGCTATACCAGTACTCTTGA
Protein sequence

>MS.gene06111.t1

MAISSQSFSPSFISTPNDLTRPTRLPFTFTHFRKTQTRFAVSSRLNSSKSSDAGGSISPENGGEVPYEIHHDLSPQRRRRGSPVFVTLPVKSVGLEGKIWRPKAMMLSLKALAAAGVEGVVVEIWWGVVERNQPRVYDWRGYRELVMMACMCGLKVRAVLAFHQHGTHGDDPNGIPLPLWVLDEIQKDPDLAFSDRFGRRNIEYISLGCDILPVLRGRSPIQAYADFMRDFRDTFRPYLGFIITGVQIGMGPGGELRYPSLSSQKLNMASSRELGEFQCYDKYMLASLNASATNMGKREWGNGGPFGTGSLTKNPERSEFFRNEGGSWNMPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYVTQSHPSELTAGYYNTFNRDGYLPILRIFSKYGFSMCCSCFEMQDVVMNKINPDCSPEGFLRQLLLAARLCDISLEGQNFSTDLDDDGFTQVLKMSKFYSDGIERRPFSFNFVRMDKNMFEPRNWDRFTRFVRRMSAGNMFRARLNSVGNLQLKTTVAAEVGLLYQLYQYS