AlfalfaGEDB | MS.gene64919

M. sativa cultivar XinJiangDaYe / MS.gene64919

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64919.t1	KEH30081.1	98	689	14	0	1	689	1	689	0.00E+00	1348.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64919.t1	Q9LX66	70.0	697	195	9	1	689	140	830	4.7e-272	938.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64919.t1	G7JSL9	98.0	689	14	0	1	689	152	840	0.0e+00	1348.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053420	MS.gene64919	0.806891	6.60E-50	-1.69E-46
MS.gene053776	MS.gene64919	0.835552	1.57E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene64919.t1	MTR_4g061833	97.968	689	14	0	1	689	1	689	1404
MS.gene64919.t1	MTR_4g061833	97.968	689	14	0	1	689	152	840	1401
MS.gene64919.t1	MTR_4g061930	97.968	689	14	0	1	689	152	840	1401
MS.gene64919.t1	MTR_2g096160	73.963	699	171	5	1	689	150	847	1027
MS.gene64919.t1	MTR_2g080220	56.776	701	286	11	1	689	148	843	769
MS.gene64919.t1	MTR_8g037700	55.124	644	276	9	1	636	179	817	702
MS.gene64919.t1	MTR_6g048090	54.121	643	266	13	1	628	148	776	655
MS.gene64919.t1	MTR_1g100110	47.708	698	315	11	1	689	158	814	619
MS.gene64919.t1	MTR_2g030310	49.848	658	300	14	1	639	163	809	607
MS.gene64919.t1	MTR_2g030310	49.848	658	300	14	1	639	163	809	607

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene64919.t1	AT3G46290	69.727	697	197	8	1	689	140	830	966
MS.gene64919.t1	AT5G59700	67.239	699	211	9	1	689	139	829	908
MS.gene64919.t1	AT5G54380	55.944	715	282	14	1	689	148	855	744
MS.gene64919.t1	AT4G39110	52.028	715	302	13	2	689	178	878	690
MS.gene64919.t1	AT2G21480	50.142	702	329	8	2	689	177	871	678
MS.gene64919.t1	AT2G39360	50.356	703	308	12	1	689	140	815	674
MS.gene64919.t1	AT5G61350	51.070	701	289	13	1	660	154	841	660
MS.gene64919.t1	AT5G24010	50.429	700	315	12	1	689	146	824	654
MS.gene64919.t1	AT1G30570	47.546	652	321	8	1	638	165	809	597
MS.gene64919.t1	AT3G51550	46.309	745	337	19	1	689	158	895	597

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Find 161 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGAACTTGGCAGAA+TGG	0.498385	4.4:+43448716	MS.gene64919:CDS
AAAGCAGTGGAATTGTTCGA+CGG	0.640786	4.4:-43447101	None:intergenic
AAAGGTGAACTTGGCAGAAT+GGG	0.478569	4.4:+43448717	MS.gene64919:CDS
AAAGTACCATAGACACTAGG+TGG	0.659812	4.4:-43447404	None:intergenic
AAATCGGACGTGTATTCATT+TGG	0.334002	4.4:+43448634	MS.gene64919:CDS
AACCCTGTGTACTCTCTTCG+CGG	0.478213	4.4:-43447191	None:intergenic
AACTAAAGTTGCTTGTAAGA+GGG	0.551361	4.4:+43448159	MS.gene64919:CDS
AAGAAAGTTGGTGTGATAGT+GGG	0.631245	4.4:+43447836	MS.gene64919:CDS
AAGACAGTTGGCACAGCAAG+GGG	0.578635	4.4:+43447928	MS.gene64919:CDS
AAGAGTCATCTGTATGGTTC+AGG	0.401676	4.4:+43448337	MS.gene64919:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAAAGTTGCTTGTAAGA+GGG	+	chr4.4:43448159-43448178	MS.gene64919:CDS	30.0%
AGAAACTGCTGAAAAATGTT+TGG	+	chr4.4:43448831-43448850	MS.gene64919:CDS	30.0%
AGTCCATTCAAAATTGCATT+AGG	-	chr4.4:43447731-43447750	None:intergenic	30.0%
GAAAAATTAGTAGCAAGGTT+AGG	-	chr4.4:43447332-43447351	None:intergenic	30.0%
GTCACATTAAAATTACTACG+CGG	-	chr4.4:43447455-43447474	None:intergenic	30.0%
GTCCATTCAAAATTGCATTA+GGG	-	chr4.4:43447730-43447749	None:intergenic	30.0%
TACTTTAACTGAGATGAACT+CGG	+	chr4.4:43447421-43447440	MS.gene64919:CDS	30.0%
TGCTGTTAAATATGCAAAAG+GGG	+	chr4.4:43447361-43447380	MS.gene64919:CDS	30.0%
TGTTTACATTACTTCCTTGT+TGG	+	chr4.4:43447568-43447587	MS.gene64919:CDS	30.0%
AAATCGGACGTGTATTCATT+TGG	+	chr4.4:43448634-43448653	MS.gene64919:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	43447047	43449116	43447047	ID=MS.gene64919
chr4.4	mRNA	43447047	43449116	43447047	ID=MS.gene64919.t1;Parent=MS.gene64919
chr4.4	exon	43447047	43449116	43447047	ID=MS.gene64919.t1.exon1;Parent=MS.gene64919.t1
chr4.4	CDS	43447047	43449116	43447047	ID=cds.MS.gene64919.t1;Parent=MS.gene64919.t1

Gene Sequence

>MS.gene64919

ATGAAGGAGTACTTGGTAAATGTGACCTTAGACACACTTGTCATCACCTTTACCCCGTCGAACAATTCCACTGCTTTTGTGAATGCTATTGAAGTTGTTTCTGTGCCTGATGACCTAATTGCCGATGATGCTATCGCCTTGAATCCGCGAAGAGAGTACACAGGGTTGTTGACAGATGCATTTGAGACGGTTTTTAGGCTTAACATGGGAGGTCCAAGTGTTTCCTCTAGTGTTGACCCGCTTCATCGAACTTGGGTTCCAGATACAAGCTTCCTGATACAACCTAACCTTGCTACTAATTTTTCAAGTATACGTGCTGTTAAATATGCAAAAGGGGGTGCAACAGAAAATATTGCTCCACCTAGTGTCTATGGTACTTTAACTGAGATGAACTCGGATAGTGATCCGCGTAGTAATTTTAATGTGACATGGAAGTTTGATGTCGAACCAGGATTTCAATACCTTGTTCGACTTCATTTCTGTGACATTGTCAGTAAAGGTCTTAATGAACTTTATTTCAATGTTTACATTACTTCCTTGTTGGCTGCCAAGGATCTCGATCTCGGTGAAAAGACTCATAATACTTTGGCTACTCCGTATTTTATGGATTTTGTTACAACACCGTCGGTTGACAATAAAATTCTTGTAAGTATTGGCCCTTCTGATGTAAATAATGATTACCCTAATGCAATTTTGAATGGACTTGAGATCATGAAAATGAACAACTCTATCAGAAGTCTCAGCGCATCTGCAGCCATGGCTTTGACGAGTAATCATGGTTCGAATTCTAAGAAAGTTGGTGTGATAGTGGGTGTTAGTCTTGGGATATTTTGTGCGCTGGTGGCCATGGTTGGAGGCTTCTTTGTACTCAAAAAGAGAAGAAGACAGTTGGCACAGCAAGGGGATTCCAAGACATGGGTTCCTTTATCGGATGGAACTTCTCACACAATGGGAAGTAAATATTCAAACGCCACAACAGCCAGCGCTGCTTCAAATTTCGGGTATCGCTTTCCTTTTGCGGTAGTTCAGGAGGCAACAAACAATTTTGATGAGAGTTGGGTTATTGGCGTAGGTGGTTTTGGTAAGGTATACAAAGGTGAATTGAGCGATGGAACTAAAGTTGCTTGTAAGAGGGGGAACCCTCGGTCCCATCAGGGACTTGCGGAGTTCCGAACTGAAATTGAAATGTTGTCTCAGTTCCGTCATCGACATCTAGTATCATTGATTGGATATTGTGACGAAAGGAATGAAATGATCTTGATATATGAATACATGGAGAACGGAACTGTGAAGAGTCATCTGTATGGTTCAGGTCTCCCTAGCTTAAGTTGGAAGGAACGACTTGAGATATGCATTGGAGCAGCTAGGGGACTCCATTACCTTCATACCGGCTATGCTAAAGCAGTTATTCATCGTGATGTAAAGCCTGCAAATATCCTACTTGATGAGAACCTCATGGCAAAAGTAGCCGATTTCGGGCTATCAAAGACCGGACCGGAGATTGATCAAACGCATGTGAGTACAGCTGTCAAAGGGAGTTTCGGCTACCTTGATCCGGAATATTTCAGAAGGCAACAATTAACAGAAAAATCGGACGTGTATTCATTTGGGGTAGTTCTGCTTGAGGTTCTATGTGCAAGACCTGTTATAGATCCATCCCTTCCGCGAGAAAAGGTGAACTTGGCAGAATGGGCGATGAAATGGCAGAAAAAAGGGGAACTTGCGCAAATCGTGGATCCCACACTTGCTGGGAAAATAAGACCGGATTCTCTAAGAAAGTTTGCAGAAACTGCTGAAAAATGTTTGGCTGATTTTGGTGTTGATAGGCCTTCCATGGGCGATGTATTGTGGAATTTGGAGTATGCTCTTCAACTTCAAGAGGCAGTTGTTAAAGGAGATCCTGAAGAAAACAGTACTAATATGATCGGCGAACTCTGTCCGCAAATTAACAATTTCGAGCAGGAACCAAGTGTTTCTGTTGAGCAATCTGAAGCTTCCAGTTTAGATGATCTTTCTGGCGTTTCTATGAGTAAAGTATTCTCACAGCTGGTGAAGTCTGAGGGAAGGTGA

Protein sequence

>MS.gene64919.t1

MKEYLVNVTLDTLVITFTPSNNSTAFVNAIEVVSVPDDLIADDAIALNPRREYTGLLTDAFETVFRLNMGGPSVSSSVDPLHRTWVPDTSFLIQPNLATNFSSIRAVKYAKGGATENIAPPSVYGTLTEMNSDSDPRSNFNVTWKFDVEPGFQYLVRLHFCDIVSKGLNELYFNVYITSLLAAKDLDLGEKTHNTLATPYFMDFVTTPSVDNKILVSIGPSDVNNDYPNAILNGLEIMKMNNSIRSLSASAAMALTSNHGSNSKKVGVIVGVSLGIFCALVAMVGGFFVLKKRRRQLAQQGDSKTWVPLSDGTSHTMGSKYSNATTASAASNFGYRFPFAVVQEATNNFDESWVIGVGGFGKVYKGELSDGTKVACKRGNPRSHQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMENGTVKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKPANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEVLCARPVIDPSLPREKVNLAEWAMKWQKKGELAQIVDPTLAGKIRPDSLRKFAETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAVVKGDPEENSTNMIGELCPQINNFEQEPSVSVEQSEASSLDDLSGVSMSKVFSQLVKSEGR