AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053420.t1 MTR_1g044155 96.098 205 4 3 1 204 158 359 1.21e-128 366
MS.gene053420.t1 MTR_1g073860 68.246 211 46 6 1 204 126 322 3.44e-66 206
MS.gene053420.t1 MTR_3g068035 63.131 198 65 4 1 196 111 302 5.84e-65 203
MS.gene053420.t1 MTR_1g079810 54.338 219 66 6 1 204 106 305 4.43e-55 177
MS.gene053420.t1 MTR_7g080980 58.763 194 57 3 1 191 89 262 1.39e-51 167
MS.gene053420.t1 MTR_5g091630 52.551 196 64 6 1 196 79 245 8.06e-49 160
MS.gene053420.t1 MTR_4g098450 60.109 183 54 2 1 182 108 272 1.52e-48 160
MS.gene053420.t1 MTR_5g080580 55.300 217 75 5 1 204 121 328 3.51e-46 155
MS.gene053420.t1 MTR_5g011520 74.590 122 31 0 1 122 132 253 6.42e-46 154
MS.gene053420.t1 MTR_8g036060 54.634 205 78 5 1 204 118 308 3.64e-44 149
MS.gene053420.t1 MTR_3g100470 54.422 147 55 4 1 143 106 244 2.40e-43 147
MS.gene053420.t1 MTR_5g066020 45.614 171 74 4 1 168 85 239 3.16e-41 140
MS.gene053420.t1 MTR_1g073870 58.716 109 30 3 10 118 61 154 6.32e-25 97.4
MS.gene053420.t1 MTR_1g079780 42.727 110 62 1 1 109 114 223 1.53e-22 93.2
MS.gene053420.t1 MTR_5g010330 38.400 125 67 4 8 123 146 269 1.59e-19 85.1
MS.gene053420.t1 MTR_7g116320 43.519 108 61 0 1 108 148 255 8.33e-19 83.6
MS.gene053420.t1 MTR_1g061530 36.719 128 77 2 1 124 146 273 1.64e-18 82.4
MS.gene053420.t1 MTR_7g116320 42.500 120 65 1 1 116 148 267 4.20e-18 80.5
MS.gene053420.t1 MTR_6g061670 38.739 111 65 1 1 108 130 240 4.31e-18 80.9
MS.gene053420.t1 MTR_6g061670 38.739 111 65 1 1 108 135 245 4.91e-18 80.9
MS.gene053420.t1 MTR_8g098390 36.111 144 73 4 6 146 176 303 2.96e-17 79.0
MS.gene053420.t1 MTR_8g036160 43.750 112 59 1 1 108 147 258 4.57e-17 78.6
MS.gene053420.t1 MTR_1g076710 41.441 111 61 2 1 108 139 248 4.95e-17 78.2
MS.gene053420.t1 MTR_8g078930 33.557 149 81 4 1 132 6 153 6.20e-17 75.1
MS.gene053420.t1 MTR_4g098460 40.179 112 57 3 3 108 88 195 1.20e-15 73.9
MS.gene053420.t1 MTR_5g089600 30.709 127 77 3 1 116 109 235 2.06e-15 72.4
MS.gene053420.t1 MTR_6g060670 43.925 107 58 2 3 109 184 288 2.21e-15 73.2
MS.gene053420.t1 MTR_4g055813 33.117 154 98 4 3 153 26 177 2.76e-15 72.8
MS.gene053420.t1 MTR_7g074935 41.441 111 62 1 1 108 132 242 6.15e-15 72.4
MS.gene053420.t1 MTR_4g098460 39.655 116 57 3 3 108 88 200 2.20e-14 70.5
MS.gene053420.t1 MTR_7g077120 34.437 151 94 2 1 146 162 312 9.45e-14 68.9
MS.gene053420.t1 MTR_5g011620 33.065 124 79 3 1 122 120 241 2.13e-13 68.6
MS.gene053420.t1 MTR_5g011610 32.800 125 80 3 1 124 63 184 3.04e-13 67.4
MS.gene053420.t1 MTR_1g053685 30.189 159 96 3 1 144 117 275 3.32e-13 67.0
MS.gene053420.t1 MTR_5g011680 31.250 128 80 3 3 122 149 276 4.67e-13 66.6
MS.gene053420.t1 MTR_4g055833 36.885 122 71 3 1 116 127 248 6.76e-13 66.6
MS.gene053420.t1 MTR_8g031100 36.842 152 89 3 1 145 160 311 9.83e-13 66.2
MS.gene053420.t1 MTR_4g055803 31.210 157 101 4 3 153 132 287 1.03e-12 66.2
MS.gene053420.t1 MTR_4g101990 38.281 128 74 2 1 123 149 276 4.08e-12 64.3
MS.gene053420.t1 MTR_4g057487 25.532 188 116 4 1 173 49 227 6.55e-12 62.8
MS.gene053420.t1 MTR_1g032910 31.746 126 76 1 1 116 135 260 8.13e-12 63.2
MS.gene053420.t1 MTR_4g057525 30.159 126 78 2 1 116 68 193 6.84e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053420.t1 AT4G14465 64.734 207 46 6 1 204 99 281 2.38e-69 213
MS.gene053420.t1 AT4G17800 57.297 185 55 2 1 185 114 274 1.94e-48 160
MS.gene053420.t1 AT2G35270 53.846 182 58 2 1 182 110 265 6.56e-48 158
MS.gene053420.t1 AT3G55560 51.777 197 77 3 1 196 120 299 3.93e-46 154
MS.gene053420.t1 AT3G04570 72.222 126 27 1 1 118 112 237 9.12e-46 154
MS.gene053420.t1 AT2G42940 63.934 122 44 0 1 122 85 206 1.38e-45 152
MS.gene053420.t1 AT5G49700 50.568 176 74 5 1 167 88 259 7.63e-44 147
MS.gene053420.t1 AT2G45430 54.500 200 77 7 1 196 121 310 2.68e-43 147
MS.gene053420.t1 AT4G22810 56.731 208 66 7 1 204 137 324 1.77e-42 145
MS.gene053420.t1 AT1G76500 62.791 129 39 1 1 120 104 232 1.98e-42 145
MS.gene053420.t1 AT3G60870 69.027 113 33 1 1 113 91 201 3.11e-42 143
MS.gene053420.t1 AT4G12050 71.200 125 35 1 1 124 150 274 7.75e-42 144
MS.gene053420.t1 AT4G35390 69.492 118 34 1 1 116 95 212 5.72e-34 122
MS.gene053420.t1 AT1G14490 48.026 152 71 3 1 144 35 186 2.81e-33 118
MS.gene053420.t1 AT1G14490 48.026 152 71 3 1 144 54 205 3.89e-33 119
MS.gene053420.t1 AT1G20900 63.433 134 40 1 1 125 118 251 2.69e-27 105
MS.gene053420.t1 AT5G62260 41.176 119 67 1 1 116 165 283 8.07e-22 90.9
MS.gene053420.t1 AT5G51590 42.342 111 61 1 1 108 183 293 7.45e-21 89.7
MS.gene053420.t1 AT4G12080 41.593 113 59 2 1 108 175 285 1.17e-20 88.6
MS.gene053420.t1 AT4G25320 40.800 125 70 2 3 124 173 296 2.17e-20 88.2
MS.gene053420.t1 AT5G62260 43.119 109 59 1 3 108 167 275 4.26e-20 87.4
MS.gene053420.t1 AT5G62260 43.119 109 59 1 3 108 167 275 4.26e-20 87.4
MS.gene053420.t1 AT3G04590 35.659 129 75 1 1 129 176 296 4.47e-20 87.4
MS.gene053420.t1 AT3G04590 35.659 129 75 1 1 129 176 296 6.89e-20 85.9
MS.gene053420.t1 AT2G45850 36.054 147 90 2 1 144 167 312 1.21e-19 85.5
MS.gene053420.t1 AT2G45850 36.054 147 90 2 1 144 167 312 1.21e-19 85.5
MS.gene053420.t1 AT1G63470 42.342 111 60 2 1 108 182 291 1.33e-19 85.9
MS.gene053420.t1 AT2G33620 44.144 111 59 2 1 108 168 278 2.06e-19 85.1
MS.gene053420.t1 AT2G33620 44.144 111 59 2 1 108 168 278 2.06e-19 85.1
MS.gene053420.t1 AT2G33620 44.144 111 59 2 1 108 168 278 2.06e-19 85.1
MS.gene053420.t1 AT2G33620 44.144 111 59 2 1 108 168 278 2.06e-19 85.1
MS.gene053420.t1 AT4G17950 40.708 113 62 2 1 108 226 338 1.56e-18 83.2
MS.gene053420.t1 AT2G45850 39.286 112 65 1 1 109 167 278 2.70e-16 75.5
MS.gene053420.t1 AT4G00200 38.462 117 69 1 1 114 128 244 8.58e-15 72.0
MS.gene053420.t1 AT4G00200 38.462 117 69 1 1 114 128 244 8.58e-15 72.0
MS.gene053420.t1 AT4G22770 40.541 111 63 1 1 108 155 265 9.24e-14 68.9
MS.gene053420.t1 AT4G22770 40.541 111 63 1 1 108 155 265 9.24e-14 68.9
MS.gene053420.t1 AT5G46640 42.857 112 59 2 1 108 185 295 4.51e-13 67.4
MS.gene053420.t1 AT1G63480 29.167 168 102 4 1 152 159 325 6.46e-13 66.6
MS.gene053420.t1 AT1G63480 29.167 168 102 4 1 152 159 325 6.46e-13 66.6
MS.gene053420.t1 AT1G63480 29.167 168 102 4 1 152 159 325 6.46e-13 66.6
MS.gene053420.t1 AT1G63480 29.167 168 102 4 1 152 159 325 6.46e-13 66.6
MS.gene053420.t1 AT1G63480 29.167 168 102 4 1 152 159 325 6.46e-13 66.6
MS.gene053420.t1 AT1G63480 29.167 168 102 4 1 152 165 331 7.33e-13 66.6
MS.gene053420.t1 AT1G63480 29.167 168 102 4 1 152 165 331 7.33e-13 66.6
MS.gene053420.t1 AT3G61310 38.095 126 74 3 3 124 171 296 3.25e-12 64.7

Find 80 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGGTGGTGGTGGTGG+TGG 0.184075 1.4:-28334745 MS.gene053420:CDS
GGCGGTGGCGGTGGCGGAGG+TGG 0.242702 1.4:-28334658 MS.gene053420:CDS
TTCCATGGCCTCATGGAATT+AGG 0.270539 1.4:-28334531 MS.gene053420:CDS
GTTGTCGCCTTCTTGCAAAC+TGG 0.280850 1.4:+28335070 None:intergenic
CTGGTGCTGCTGGTTGTCTA+AGG 0.295952 1.4:+28335001 None:intergenic
CCACCAAATCTTCTTCCTAA+TGG 0.304808 1.4:-28334577 MS.gene053420:CDS
GCGGTGGCGGTGGCGGAGGT+GGG 0.308632 1.4:-28334657 MS.gene053420:CDS
GGTGGTGGTGGTGGGGTCCA+TGG 0.322478 1.4:-28334736 MS.gene053420:CDS
GATTGCTGCTGGACCTGTTA+TGG 0.325355 1.4:-28334827 MS.gene053420:CDS
GTTGGATCTTTGATTGCTGC+TGG 0.327653 1.4:-28334838 MS.gene053420:CDS
CGGTGGCGGTGGCGGAGGTG+GGG 0.345486 1.4:-28334656 MS.gene053420:CDS
AATTCCTCTCCTCCTGGAAT+TGG 0.346771 1.4:-28334688 MS.gene053420:CDS
GGTGGCGGTGGCGGAGGTGG+GGG 0.366202 1.4:-28334655 MS.gene053420:CDS
CCTGCTCCTCCAGGCGCAAC+CGG 0.373469 1.4:-28334913 MS.gene053420:CDS
AGTAGTGGCGGTGGCGGTGG+CGG 0.374041 1.4:-28334664 MS.gene053420:CDS
GGAGCTGTTGTAGCACTTCA+TGG 0.401949 1.4:-28334979 MS.gene053420:CDS
CCACCATTAGGAAGAAGATT+TGG 0.402836 1.4:+28334574 None:intergenic
TTTGATATTCTATCGTTAAC+CGG 0.404149 1.4:-28334952 MS.gene053420:CDS
AGTGGCGGTGGCGGTGGCGG+AGG 0.407836 1.4:-28334661 MS.gene053420:CDS
GTTGTTGGTGGAAGTGTTGT+TGG 0.410894 1.4:-28334856 MS.gene053420:CDS
GGAAGTAGTGGCGGTGGCGG+TGG 0.415322 1.4:-28334667 MS.gene053420:CDS
GTAGCAGCAATAACCATAAC+AGG 0.415453 1.4:+28334814 None:intergenic
CTACCGGGACCTGCTCCTCC+AGG 0.422866 1.4:-28334922 MS.gene053420:CDS
ACAACAGCTCCTGGTGCTGC+TGG 0.430712 1.4:+28334991 None:intergenic
GAGGAAGAAGGTGGTGGTGG+TGG 0.432287 1.4:-28334748 MS.gene053420:CDS
CCGCCACTACTTCCAATTCC+AGG 0.433840 1.4:+28334676 None:intergenic
ACTGTGAGTCCGGTTGCGCC+TGG 0.442371 1.4:+28334904 None:intergenic
CCGGTTGCGCCTGGAGGAGC+AGG 0.444168 1.4:+28334913 None:intergenic
GGTGGTAATTCCTCTCCTCC+TGG 0.450993 1.4:-28334694 MS.gene053420:CDS
CATGGAGGACATCATGTTGC+TGG 0.452928 1.4:-28334718 MS.gene053420:CDS
GGTGGTGGTGGGGTCCATGG+AGG 0.456409 1.4:-28334733 MS.gene053420:CDS
TGTCCCACATGACCACCATT+AGG 0.461538 1.4:+28334562 None:intergenic
TTGTCGCCTTCTTGCAAACT+GGG 0.462433 1.4:+28335071 None:intergenic
GGCTAAGTACACTGTGAGTC+CGG 0.495462 1.4:+28334894 None:intergenic
ATTGGAAGTAGTGGCGGTGG+CGG 0.495469 1.4:-28334670 MS.gene053420:CDS
TCTTCCTAATGGTGGTCATG+TGG 0.500420 1.4:-28334566 MS.gene053420:CDS
AAAGGCATAGAAGATGGATC+TGG 0.504682 1.4:+28334610 None:intergenic
GATGAGGAAGAAGGTGGTGG+TGG 0.510507 1.4:-28334751 MS.gene053420:CDS
TTATACAAAGGCATAGAAGA+TGG 0.513643 1.4:+28334604 None:intergenic
CTTCCTAATGGTGGTCATGT+GGG 0.517416 1.4:-28334565 MS.gene053420:CDS
GCGCCTGGAGGAGCAGGTCC+CGG 0.523911 1.4:+28334919 None:intergenic
AACAACTTGACCTTGTCCAC+CGG 0.525030 1.4:+28334873 None:intergenic
CCATTAGGAAGAAGATTTGG+TGG 0.526081 1.4:+28334577 None:intergenic
CATGTGATGGAAGTATCCTC+TGG 0.527013 1.4:-28335117 None:intergenic
CGCGGTGTTTGTGTTCTAAG+TGG 0.528928 1.4:-28335048 MS.gene053420:CDS
TCTTCCTCATCTTCTTCAAG+TGG 0.534880 1.4:+28334763 None:intergenic
GTTTGTGTTCTAAGTGGTAG+TGG 0.542743 1.4:-28335042 MS.gene053420:CDS
TGAAGTGCTACAACAGCTCC+TGG 0.542969 1.4:+28334982 None:intergenic
CTGTTGTAGCACTTCATGGA+AGG 0.544498 1.4:-28334975 MS.gene053420:CDS
TGGTGCTGCTGGTTGTCTAA+GGG 0.547569 1.4:+28335002 None:intergenic
GGCCTAATTCCATGAGGCCA+TGG 0.547705 1.4:+28334529 None:intergenic
GGACATCATGTTGCTGGTGG+TGG 0.550245 1.4:-28334712 MS.gene053420:CDS
GGTGGACAAGGTCAAGTTGT+TGG 0.552217 1.4:-28334871 MS.gene053420:CDS
AGGTCCCGGTAGAAAAGCTC+CGG 0.559148 1.4:+28334933 None:intergenic
GTGAGTCCGGTTGCGCCTGG+AGG 0.561910 1.4:+28334907 None:intergenic
GTGTACTTAGCCGGTGGACA+AGG 0.563201 1.4:-28334883 MS.gene053420:CDS
CTTAGACAACCAGCAGCACC+AGG 0.566004 1.4:-28335000 MS.gene053420:CDS
GGAATTGGAAGTAGTGGCGG+TGG 0.573564 1.4:-28334673 MS.gene053420:CDS
CTTGAAGAAGATGAGGAAGA+AGG 0.574414 1.4:-28334760 MS.gene053420:CDS
TTCAGCTACATCTGCTCCAG+AGG 0.579175 1.4:+28335101 None:intergenic
CCTCCTGGAATTGGAAGTAG+TGG 0.581351 1.4:-28334679 MS.gene053420:CDS
GGACAAGGTCAAGTTGTTGG+TGG 0.585040 1.4:-28334868 MS.gene053420:CDS
ATTGCCACTTGAAGAAGATG+AGG 0.591486 1.4:-28334767 MS.gene053420:CDS
GAAGATGAGGAAGAAGGTGG+TGG 0.599581 1.4:-28334754 MS.gene053420:CDS
GTGTAGCCCAGTTTGCAAGA+AGG 0.599811 1.4:-28335077 MS.gene053420:CDS
TTTGGTGGCAAATTATACAA+AGG 0.599913 1.4:+28334592 None:intergenic
GAAGAAGATGAGGAAGAAGG+TGG 0.600407 1.4:-28334757 MS.gene053420:CDS
CAGCAACATGATGTCCTCCA+TGG 0.612529 1.4:+28334719 None:intergenic
GGACTCACAGTGTACTTAGC+CGG 0.612698 1.4:-28334892 MS.gene053420:CDS
CCAAATCTTCTTCCTAATGG+TGG 0.613694 1.4:-28334574 MS.gene053420:CDS
GAAGGTGGCCAGATTGCATG+TGG 0.624756 1.4:+28334632 None:intergenic
TAGAAGATGGATCTGGAAGG+TGG 0.632025 1.4:+28334617 None:intergenic
GGAGGACATCATGTTGCTGG+TGG 0.633234 1.4:-28334715 MS.gene053420:CDS
ACTTCCAATTCCAGGAGGAG+AGG 0.633260 1.4:+28334684 None:intergenic
CCTGGAATTGGAAGTAGTGG+CGG 0.637275 1.4:-28334676 MS.gene053420:CDS
CTCACAGTGTACTTAGCCGG+TGG 0.652416 1.4:-28334889 MS.gene053420:CDS
GCATAGAAGATGGATCTGGA+AGG 0.680296 1.4:+28334614 None:intergenic
TAGGGTGGCCTAATTCCATG+AGG 0.740787 1.4:+28334523 None:intergenic
CCACTACTTCCAATTCCAGG+AGG 0.753539 1.4:+28334679 None:intergenic
TTTGCAAGAAGGCGACAACG+CGG 0.760437 1.4:-28335066 MS.gene053420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTGATATTCTATCGTTAAC+CGG - chr1.4:28334678-28334697 MS.gene053420:CDS 25.0%
! TTATACAAAGGCATAGAAGA+TGG + chr1.4:28335029-28335048 None:intergenic 30.0%
! TTTGGTGGCAAATTATACAA+AGG + chr1.4:28335041-28335060 None:intergenic 30.0%
CCAAATCTTCTTCCTAATGG+TGG - chr1.4:28335056-28335075 MS.gene053420:CDS 40.0%
CCACCAAATCTTCTTCCTAA+TGG - chr1.4:28335053-28335072 MS.gene053420:CDS 40.0%
CCACCATTAGGAAGAAGATT+TGG + chr1.4:28335059-28335078 None:intergenic 40.0%
CCATTAGGAAGAAGATTTGG+TGG + chr1.4:28335056-28335075 None:intergenic 40.0%
CTTGAAGAAGATGAGGAAGA+AGG - chr1.4:28334870-28334889 MS.gene053420:CDS 40.0%
GTAGCAGCAATAACCATAAC+AGG + chr1.4:28334819-28334838 None:intergenic 40.0%
TCTTCCTCATCTTCTTCAAG+TGG + chr1.4:28334870-28334889 None:intergenic 40.0%
! AAAGGCATAGAAGATGGATC+TGG + chr1.4:28335023-28335042 None:intergenic 40.0%
! ATTGCCACTTGAAGAAGATG+AGG - chr1.4:28334863-28334882 MS.gene053420:CDS 40.0%
! GTTTGTGTTCTAAGTGGTAG+TGG - chr1.4:28334588-28334607 MS.gene053420:CDS 40.0%
AACAACTTGACCTTGTCCAC+CGG + chr1.4:28334760-28334779 None:intergenic 45.0%
AATTCCTCTCCTCCTGGAAT+TGG - chr1.4:28334942-28334961 MS.gene053420:CDS 45.0%
CTGTTGTAGCACTTCATGGA+AGG - chr1.4:28334655-28334674 MS.gene053420:CDS 45.0%
CTTCCTAATGGTGGTCATGT+GGG - chr1.4:28335065-28335084 MS.gene053420:CDS 45.0%
GAAGAAGATGAGGAAGAAGG+TGG - chr1.4:28334873-28334892 MS.gene053420:CDS 45.0%
GCATAGAAGATGGATCTGGA+AGG + chr1.4:28335019-28335038 None:intergenic 45.0%
GTTGGATCTTTGATTGCTGC+TGG - chr1.4:28334792-28334811 MS.gene053420:CDS 45.0%
TAGAAGATGGATCTGGAAGG+TGG + chr1.4:28335016-28335035 None:intergenic 45.0%
TCTTCCTAATGGTGGTCATG+TGG - chr1.4:28335064-28335083 MS.gene053420:CDS 45.0%
TTCCATGGCCTCATGGAATT+AGG - chr1.4:28335099-28335118 MS.gene053420:CDS 45.0%
TTGTCGCCTTCTTGCAAACT+GGG + chr1.4:28334562-28334581 None:intergenic 45.0%
! GTTAACCGGAGCTTTTCTAC+CGG - chr1.4:28334692-28334711 MS.gene053420:CDS 45.0%
! TGGGACATGAAGCTTTTCCA+TGG - chr1.4:28335084-28335103 MS.gene053420:CDS 45.0%
! TTAACCGGAGCTTTTCTACC+GGG - chr1.4:28334693-28334712 MS.gene053420:CDS 45.0%
!! GTTGTTGGTGGAAGTGTTGT+TGG - chr1.4:28334774-28334793 MS.gene053420:CDS 45.0%
ACTTCCAATTCCAGGAGGAG+AGG + chr1.4:28334949-28334968 None:intergenic 50.0%
CAGCAACATGATGTCCTCCA+TGG + chr1.4:28334914-28334933 None:intergenic 50.0%
CATGGAGGACATCATGTTGC+TGG - chr1.4:28334912-28334931 MS.gene053420:CDS 50.0%
CCACTACTTCCAATTCCAGG+AGG + chr1.4:28334954-28334973 None:intergenic 50.0%
CCTCCTGGAATTGGAAGTAG+TGG - chr1.4:28334951-28334970 MS.gene053420:CDS 50.0%
CCTGGAATTGGAAGTAGTGG+CGG - chr1.4:28334954-28334973 MS.gene053420:CDS 50.0%
GAAGATGAGGAAGAAGGTGG+TGG - chr1.4:28334876-28334895 MS.gene053420:CDS 50.0%
GATTGCTGCTGGACCTGTTA+TGG - chr1.4:28334803-28334822 MS.gene053420:CDS 50.0%
GGACTCACAGTGTACTTAGC+CGG - chr1.4:28334738-28334757 MS.gene053420:CDS 50.0%
GGAGCTGTTGTAGCACTTCA+TGG - chr1.4:28334651-28334670 MS.gene053420:CDS 50.0%
GGCTAAGTACACTGTGAGTC+CGG + chr1.4:28334739-28334758 None:intergenic 50.0%
GTGTAGCCCAGTTTGCAAGA+AGG - chr1.4:28334553-28334572 MS.gene053420:CDS 50.0%
GTTGTCGCCTTCTTGCAAAC+TGG + chr1.4:28334563-28334582 None:intergenic 50.0%
TAGGGTGGCCTAATTCCATG+AGG + chr1.4:28335110-28335129 None:intergenic 50.0%
TGTCCCACATGACCACCATT+AGG + chr1.4:28335071-28335090 None:intergenic 50.0%
TTCAGCTACATCTGCTCCAG+AGG + chr1.4:28334532-28334551 None:intergenic 50.0%
TTTGCAAGAAGGCGACAACG+CGG - chr1.4:28334564-28334583 MS.gene053420:CDS 50.0%
! CGCGGTGTTTGTGTTCTAAG+TGG - chr1.4:28334582-28334601 MS.gene053420:CDS 50.0%
! GAAGCTTTTCCATGGCCTCA+TGG - chr1.4:28335092-28335111 MS.gene053420:CDS 50.0%
! GGACAAGGTCAAGTTGTTGG+TGG - chr1.4:28334762-28334781 MS.gene053420:CDS 50.0%
! GGTGGACAAGGTCAAGTTGT+TGG - chr1.4:28334759-28334778 MS.gene053420:CDS 50.0%
! TGAAGTGCTACAACAGCTCC+TGG + chr1.4:28334651-28334670 None:intergenic 50.0%
!! TGGTGCTGCTGGTTGTCTAA+GGG + chr1.4:28334631-28334650 None:intergenic 50.0%
AGGTCCCGGTAGAAAAGCTC+CGG + chr1.4:28334700-28334719 None:intergenic 55.0%
ATTGGAAGTAGTGGCGGTGG+CGG - chr1.4:28334960-28334979 MS.gene053420:CDS 55.0%
CCGCCACTACTTCCAATTCC+AGG + chr1.4:28334957-28334976 None:intergenic 55.0%
CTCACAGTGTACTTAGCCGG+TGG - chr1.4:28334741-28334760 MS.gene053420:CDS 55.0%
CTTAGACAACCAGCAGCACC+AGG - chr1.4:28334630-28334649 MS.gene053420:CDS 55.0%
GAAGGTGGCCAGATTGCATG+TGG + chr1.4:28335001-28335020 None:intergenic 55.0%
GGAATTGGAAGTAGTGGCGG+TGG - chr1.4:28334957-28334976 MS.gene053420:CDS 55.0%
GGACATCATGTTGCTGGTGG+TGG - chr1.4:28334918-28334937 MS.gene053420:CDS 55.0%
GGAGGACATCATGTTGCTGG+TGG - chr1.4:28334915-28334934 MS.gene053420:CDS 55.0%
GGCCTAATTCCATGAGGCCA+TGG + chr1.4:28335104-28335123 None:intergenic 55.0%
GGTGGTAATTCCTCTCCTCC+TGG - chr1.4:28334936-28334955 MS.gene053420:CDS 55.0%
GTGTACTTAGCCGGTGGACA+AGG - chr1.4:28334747-28334766 MS.gene053420:CDS 55.0%
! GATGAGGAAGAAGGTGGTGG+TGG - chr1.4:28334879-28334898 MS.gene053420:CDS 55.0%
!! AAGAAGGTGGTGGTGGTGGT+GGG - chr1.4:28334886-28334905 MS.gene053420:CDS 55.0%
!! CTGGTGCTGCTGGTTGTCTA+AGG + chr1.4:28334632-28334651 None:intergenic 55.0%
!! ACAACAGCTCCTGGTGCTGC+TGG + chr1.4:28334642-28334661 None:intergenic 60.0%
!! AGAAGGTGGTGGTGGTGGTG+GGG - chr1.4:28334887-28334906 MS.gene053420:CDS 60.0%
!! GAAGAAGGTGGTGGTGGTGG+TGG - chr1.4:28334885-28334904 MS.gene053420:CDS 60.0%
!! GAGGAAGAAGGTGGTGGTGG+TGG - chr1.4:28334882-28334901 MS.gene053420:CDS 60.0%
ACTGTGAGTCCGGTTGCGCC+TGG + chr1.4:28334729-28334748 None:intergenic 65.0%
GGTGGGGGCCACATGCAATC+TGG - chr1.4:28334990-28335009 MS.gene053420:CDS 65.0%
CCTGCTCCTCCAGGCGCAAC+CGG - chr1.4:28334717-28334736 MS.gene053420:CDS 70.0%
CTACCGGGACCTGCTCCTCC+AGG - chr1.4:28334708-28334727 MS.gene053420:CDS 70.0%
GTGAGTCCGGTTGCGCCTGG+AGG + chr1.4:28334726-28334745 None:intergenic 70.0%
! AGTAGTGGCGGTGGCGGTGG+CGG - chr1.4:28334966-28334985 MS.gene053420:CDS 70.0%
! GGAAGTAGTGGCGGTGGCGG+TGG - chr1.4:28334963-28334982 MS.gene053420:CDS 70.0%
!! GGTGGTGGTGGGGTCCATGG+AGG - chr1.4:28334897-28334916 MS.gene053420:CDS 70.0%
!! GGTGGTGGTGGTGGGGTCCA+TGG - chr1.4:28334894-28334913 MS.gene053420:CDS 70.0%
CCGGTTGCGCCTGGAGGAGC+AGG + chr1.4:28334720-28334739 None:intergenic 75.0%
GCGCCTGGAGGAGCAGGTCC+CGG + chr1.4:28334714-28334733 None:intergenic 75.0%
!! AGTGGCGGTGGCGGTGGCGG+AGG - chr1.4:28334969-28334988 MS.gene053420:CDS 80.0%
!!! CGGTGGCGGTGGCGGAGGTG+GGG - chr1.4:28334974-28334993 MS.gene053420:CDS 80.0%
!!! GCGGTGGCGGTGGCGGAGGT+GGG - chr1.4:28334973-28334992 MS.gene053420:CDS 80.0%
!!! GGTGGCGGTGGCGGAGGTGG+GGG - chr1.4:28334975-28334994 MS.gene053420:CDS 80.0%
!!! GGCGGTGGCGGTGGCGGAGG+TGG - chr1.4:28334972-28334991 MS.gene053420:CDS 85.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 28334519 28335133 28334519 ID=MS.gene053420
chr1.4 mRNA 28334519 28335133 28334519 ID=MS.gene053420.t1;Parent=MS.gene053420
chr1.4 exon 28334519 28335133 28334519 ID=MS.gene053420.t1.exon1;Parent=MS.gene053420.t1
chr1.4 CDS 28334519 28335133 28334519 ID=cds.MS.gene053420.t1;Parent=MS.gene053420.t1
Gene Sequence

>MS.gene053420

ATGGAAGTATCCTCTGGAGCAGATGTAGCTGAAAGTGTAGCCCAGTTTGCAAGAAGGCGACAACGCGGTGTTTGTGTTCTAAGTGGTAGTGGATCAGTTGCAAATGTTACCCTTAGACAACCAGCAGCACCAGGAGCTGTTGTAGCACTTCATGGAAGGTTTGATATTCTATCGTTAACCGGAGCTTTTCTACCGGGACCTGCTCCTCCAGGCGCAACCGGACTCACAGTGTACTTAGCCGGTGGACAAGGTCAAGTTGTTGGTGGAAGTGTTGTTGGATCTTTGATTGCTGCTGGACCTGTTATGGTTATTGCTGCTACTTTTGCTAATGCTACTTATGAAAGATTGCCACTTGAAGAAGATGAGGAAGAAGGTGGTGGTGGTGGTGGGGTCCATGGAGGACATCATGTTGCTGGTGGTGGTAATTCCTCTCCTCCTGGAATTGGAAGTAGTGGCGGTGGCGGTGGCGGAGGTGGGGGCCACATGCAATCTGGCCACCTTCCAGATCCATCTTCTATGCCTTTGTATAATTTGCCACCAAATCTTCTTCCTAATGGTGGTCATGTGGGACATGAAGCTTTTCCATGGCCTCATGGAATTAGGCCACCCTACTGA

Protein sequence

>MS.gene053420.t1

MEVSSGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFDILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVIAATFANATYERLPLEEDEEEGGGGGGVHGGHHVAGGGNSSPPGIGSSGGGGGGGGGHMQSGHLPDPSSMPLYNLPPNLLPNGGHVGHEAFPWPHGIRPPY