Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64955.t1 | XP_003630286.1 | 92.4 | 395 | 20 | 4 | 1 | 390 | 1 | 390 | 3.90E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64955.t1 | P52424 | 77.0 | 395 | 77 | 4 | 1 | 389 | 1 | 387 | 1.2e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64955.t1 | B7FJ14 | 92.4 | 395 | 20 | 4 | 1 | 390 | 1 | 390 | 2.8e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057165 | MS.gene64955 | 0.816482 | 5.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64955.t1 | MTR_8g093860 | 92.405 | 395 | 20 | 4 | 1 | 390 | 1 | 390 | 0.0 | 691 |
| MS.gene64955.t1 | MTR_8g093860 | 83.797 | 395 | 20 | 5 | 1 | 390 | 1 | 356 | 0.0 | 603 |
| MS.gene64955.t1 | MTR_5g093890 | 89.474 | 114 | 12 | 0 | 277 | 390 | 109 | 222 | 2.33e-68 | 215 |
| MS.gene64955.t1 | MTR_5g093890 | 61.350 | 163 | 16 | 4 | 43 | 200 | 1 | 121 | 1.54e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64955.t1 | AT3G55010 | 70.866 | 381 | 96 | 4 | 10 | 389 | 22 | 388 | 0.0 | 515 |
| MS.gene64955.t1 | AT3G55010 | 70.866 | 381 | 96 | 4 | 10 | 389 | 22 | 388 | 0.0 | 515 |
Find 93 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTTGCAGAAGCTTTAA+TGG | 0.186823 | 5.4:+73683604 | MS.gene64955:CDS |
| TCTCTTCTTCAGGTTATAAA+AGG | 0.219818 | 5.4:+73682506 | MS.gene64955:intron |
| TGAAACCGCCACCAGTAATA+TGG | 0.229484 | 5.4:-73683785 | None:intergenic |
| GTTGCTGTTAAAGCTGAATT+AGG | 0.262432 | 5.4:+73681307 | MS.gene64955:CDS |
| GTGATTGTAGCGGTGCCTTT+AGG | 0.290401 | 5.4:-73681193 | None:intergenic |
| CTGGCATTCATGACACTATT+GGG | 0.307297 | 5.4:+73682215 | MS.gene64955:CDS |
| GTCAATGACATTGTTACTTC+GGG | 0.311408 | 5.4:+73682341 | MS.gene64955:CDS |
| ATAGAAGCACCAAAACCTTC+TGG | 0.347224 | 5.4:-73683831 | None:intergenic |
| ACTGGCATTCATGACACTAT+TGG | 0.351495 | 5.4:+73682214 | MS.gene64955:CDS |
| TGTTTAACATAGATCTTAGT+TGG | 0.359529 | 5.4:-73683629 | None:intergenic |
| GTGATGCTTGCCTTTGAAAC+TGG | 0.364727 | 5.4:+73682196 | MS.gene64955:CDS |
| AAGGGAATTGCCCATATTAC+TGG | 0.366271 | 5.4:+73683774 | MS.gene64955:CDS |
| ACCAATCCCGGGAGCCATCT+TGG | 0.375081 | 5.4:-73681398 | None:intergenic |
| GTTATAAAAGGAATTGTTGA+TGG | 0.376433 | 5.4:+73682518 | MS.gene64955:CDS |
| AACTAAGATCTATGTTAAAC+AGG | 0.388871 | 5.4:+73683631 | MS.gene64955:CDS |
| TCAAGTGGAGTTCACTCTAA+TGG | 0.393600 | 5.4:+73683433 | MS.gene64955:CDS |
| TTAGAGTGAACTCCACTTGA+TGG | 0.400231 | 5.4:-73683430 | None:intergenic |
| TTCAACAAAGCAATGAGTTT+CGG | 0.405513 | 5.4:+73681124 | None:intergenic |
| GCTCCCGGGATTGGTGGCTT+CGG | 0.417133 | 5.4:+73681406 | MS.gene64955:CDS |
| ACCGCGGGCGACATTCTTAT+CGG | 0.417757 | 5.4:+73683403 | MS.gene64955:CDS |
| GGTGATTCATATCTCGTTGC+TGG | 0.425062 | 5.4:+73682151 | MS.gene64955:intron |
| CAATCTGATTGTGCTCTTCT+CGG | 0.426140 | 5.4:+73682548 | MS.gene64955:CDS |
| ATCTTAGTGGTTGTGCGGTT+GGG | 0.428572 | 5.4:+73683341 | MS.gene64955:CDS |
| TGATGTGGATGTTGCTGAAC+AGG | 0.430758 | 5.4:+73682409 | MS.gene64955:CDS |
| TTCCTAGATTACTTTGCTAC+TGG | 0.434841 | 5.4:+73682380 | MS.gene64955:CDS |
| CCCGGGATTGGTGGCTTCGG+TGG | 0.435733 | 5.4:+73681409 | MS.gene64955:CDS |
| AGTATTCTATTAGCTGCCTC+TGG | 0.440480 | 5.4:-73684089 | None:intergenic |
| ACCACCGAAGCCACCAATCC+CGG | 0.448332 | 5.4:-73681410 | None:intergenic |
| GCCAAGATGGCTCCCGGGAT+TGG | 0.453678 | 5.4:+73681397 | MS.gene64955:CDS |
| GATCTTAGTGGTTGTGCGGT+TGG | 0.461826 | 5.4:+73683340 | MS.gene64955:CDS |
| GACCAGTAGCAAAGTAATCT+AGG | 0.464226 | 5.4:-73682382 | None:intergenic |
| GCAACTGTAGTGCTAGCGCC+AGG | 0.466715 | 5.4:-73683590 | None:intergenic |
| CGTCAATGACATTGTTACTT+CGG | 0.471639 | 5.4:+73682340 | MS.gene64955:CDS |
| GTCAGCAAAGGAGGGGTAAA+GGG | 0.471923 | 5.4:+73683756 | MS.gene64955:CDS |
| AAGAAAGATTCCGTTATCAA+TGG | 0.474326 | 5.4:+73683370 | MS.gene64955:CDS |
| CTGCCTCTGGAGTGGCTACA+AGG | 0.475001 | 5.4:-73684076 | None:intergenic |
| AGTCAGCAAAGGAGGGGTAA+AGG | 0.475808 | 5.4:+73683755 | MS.gene64955:CDS |
| TGACACTATTGGGATTGATC+TGG | 0.476022 | 5.4:+73682225 | MS.gene64955:CDS |
| TTTCAGACTGCAGAGATGCC+TGG | 0.478402 | 5.4:+73683295 | MS.gene64955:intron |
| AAGATGGCTCCCGGGATTGG+TGG | 0.498402 | 5.4:+73681400 | MS.gene64955:CDS |
| GAAACCGCCACCAGTAATAT+GGG | 0.506817 | 5.4:-73683784 | None:intergenic |
| GGTGAAGTTATTAGCGGAAA+GGG | 0.508573 | 5.4:+73684149 | MS.gene64955:CDS |
| AGAATTGCCAAGATGGCTCC+CGG | 0.510784 | 5.4:+73681391 | MS.gene64955:CDS |
| CCACCGAAGCCACCAATCCC+GGG | 0.518062 | 5.4:-73681409 | None:intergenic |
| TTGCTGGTACTGATGGTGTT+GGG | 0.519574 | 5.4:+73682167 | MS.gene64955:CDS |
| GAAGGTGAGTATGATCTTAG+TGG | 0.521805 | 5.4:+73683328 | MS.gene64955:CDS |
| AGGTCAAGGTCTTACTTACA+AGG | 0.523785 | 5.4:+73681327 | MS.gene64955:CDS |
| TGTTCGAAGAATTGCCAAGA+TGG | 0.524535 | 5.4:+73681384 | MS.gene64955:CDS |
| GTCATGAATGCCAGTTTCAA+AGG | 0.530046 | 5.4:-73682206 | None:intergenic |
| TGCTACTGGTCACCTTGATG+TGG | 0.532410 | 5.4:+73682394 | MS.gene64955:CDS |
| TGAAGCCATTTGAAAACTGC+AGG | 0.535533 | 5.4:-73683876 | None:intergenic |
| TATCTCGTTGCTGGTACTGA+TGG | 0.539782 | 5.4:+73682160 | MS.gene64955:CDS |
| TCATTGAAAGATAAACTCCC+TGG | 0.543700 | 5.4:+73683572 | MS.gene64955:CDS |
| GTTGCTGGTACTGATGGTGT+TGG | 0.546250 | 5.4:+73682166 | MS.gene64955:CDS |
| GTTGCATCAGTTAAACCTAA+AGG | 0.547245 | 5.4:+73681178 | MS.gene64955:CDS |
| ATTGCCCATATTACTGGTGG+CGG | 0.548526 | 5.4:+73683780 | MS.gene64955:CDS |
| CGCATAGGTGAAGTTATTAG+CGG | 0.554142 | 5.4:+73684143 | MS.gene64955:CDS |
| GTTAAAGCTGAATTAGGTCA+AGG | 0.574891 | 5.4:+73681313 | MS.gene64955:CDS |
| CGATTGCAATGCGCAAAATG+TGG | 0.583088 | 5.4:-73681216 | None:intergenic |
| TTCTATATACAAAGACTCGT+GGG | 0.583148 | 5.4:+73683848 | MS.gene64955:CDS |
| AGGTGAAGTTATTAGCGGAA+AGG | 0.587730 | 5.4:+73684148 | MS.gene64955:CDS |
| ATGCCTGGTCTATACAAAGA+AGG | 0.589062 | 5.4:+73683310 | MS.gene64955:CDS |
| GAATTGCCAAGATGGCTCCC+GGG | 0.589431 | 5.4:+73681392 | MS.gene64955:CDS |
| CGCTAATAACTTCACCTATG+CGG | 0.589870 | 5.4:-73684142 | None:intergenic |
| TCTATTAGCTGCCTCTGGAG+TGG | 0.591995 | 5.4:-73684084 | None:intergenic |
| GTTCAGCAACATCCACATCA+AGG | 0.596378 | 5.4:-73682406 | None:intergenic |
| CTTATCGGTTTACCATCAAG+TGG | 0.597195 | 5.4:+73683418 | MS.gene64955:CDS |
| CTTCTATATACAAAGACTCG+TGG | 0.598028 | 5.4:+73683847 | MS.gene64955:CDS |
| CAATGACATTGTTACTTCGG+GGG | 0.601621 | 5.4:+73682343 | MS.gene64955:CDS |
| ACAGAGAAAGCCTACCGCAT+AGG | 0.605304 | 5.4:+73684128 | MS.gene64955:CDS |
| TCACCTTCTTTGTATAGACC+AGG | 0.605966 | 5.4:-73683313 | None:intergenic |
| ACCAGCGTCAATGTCAACTC+CGG | 0.611044 | 5.4:-73681353 | None:intergenic |
| TCCGGAGTTGACATTGACGC+TGG | 0.615130 | 5.4:+73681352 | MS.gene64955:CDS |
| AATAACTTCACCTATGCGGT+AGG | 0.617101 | 5.4:-73684138 | None:intergenic |
| CAACTGTAGTGCTAGCGCCA+GGG | 0.619110 | 5.4:-73683589 | None:intergenic |
| TTGACATAGTCAGCAAAGGA+GGG | 0.619945 | 5.4:+73683748 | MS.gene64955:CDS |
| CTTGACATAGTCAGCAAAGG+AGG | 0.620172 | 5.4:+73683747 | MS.gene64955:CDS |
| TTGTGCTCTTCTCGGAGGAG+AGG | 0.621414 | 5.4:+73682556 | MS.gene64955:CDS |
| GATTGCAATGCGCAAAATGT+GGG | 0.626408 | 5.4:-73681215 | None:intergenic |
| TCAATGACATTGTTACTTCG+GGG | 0.633382 | 5.4:+73682342 | MS.gene64955:CDS |
| GGTAGAGTACTTGAGAAAAG+CGG | 0.636828 | 5.4:+73683545 | MS.gene64955:intron |
| TGACATAGTCAGCAAAGGAG+GGG | 0.637780 | 5.4:+73683749 | MS.gene64955:CDS |
| AATGGAAAAGACATTACCGC+GGG | 0.638544 | 5.4:+73683388 | MS.gene64955:CDS |
| GTGCTTGACATAGTCAGCAA+AGG | 0.639899 | 5.4:+73683744 | MS.gene64955:CDS |
| GGTCTTACTTACAAGGACTC+CGG | 0.645432 | 5.4:+73681334 | MS.gene64955:CDS |
| TACTGATGGTGTTGGGACGA+AGG | 0.646206 | 5.4:+73682174 | MS.gene64955:CDS |
| CAAAATGTGGGTGATTGTAG+CGG | 0.661076 | 5.4:-73681203 | None:intergenic |
| GGTCCTTGTAGCCACTCCAG+AGG | 0.662924 | 5.4:+73684073 | MS.gene64955:CDS |
| GGAATTGCCCATATTACTGG+TGG | 0.664696 | 5.4:+73683777 | MS.gene64955:CDS |
| TCTGATTGTGCTCTTCTCGG+AGG | 0.665825 | 5.4:+73682551 | MS.gene64955:CDS |
| ACCGATAAGAATGTCGCCCG+CGG | 0.680506 | 5.4:-73683404 | None:intergenic |
| GTATGATCTTAGTGGTTGTG+CGG | 0.694362 | 5.4:+73683336 | MS.gene64955:CDS |
| CAATGGAAAAGACATTACCG+CGG | 0.734778 | 5.4:+73683387 | MS.gene64955:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTATAAAATTAT+TGG | + | chr5.4:73683496-73683515 | MS.gene64955:intron | 0.0% |
| !!! | TGAAATATATCAATATATTT+TGG | + | chr5.4:73683524-73683543 | MS.gene64955:intron | 10.0% |
| !! | AAAAGAATCTTTAAATTACA+AGG | - | chr5.4:73681853-73681872 | None:intergenic | 15.0% |
| !! | AAGTAATCTAGGAAAAATAA+AGG | - | chr5.4:73682374-73682393 | None:intergenic | 20.0% |
| !! | AAGTGTATAAAACTAATTAG+AGG | - | chr5.4:73683276-73683295 | None:intergenic | 20.0% |
| !! | ACATCAAATTTCAGAATTAA+AGG | + | chr5.4:73681889-73681908 | MS.gene64955:intron | 20.0% |
| !! | CAAAGAATCTTTAAATTACA+AGG | + | chr5.4:73681997-73682016 | MS.gene64955:intron | 20.0% |
| !! | CAAATCAATATCCAATAAAA+AGG | - | chr5.4:73682117-73682136 | None:intergenic | 20.0% |
| !! | TGTTTGAATAAAATGTCAAT+AGG | - | chr5.4:73683095-73683114 | None:intergenic | 20.0% |
| !!! | AATTTGATCTTCAAATCTTT+TGG | + | chr5.4:73683956-73683975 | MS.gene64955:intron | 20.0% |
| !!! | TAAATGGTTTTATTGGAATT+TGG | + | chr5.4:73682925-73682944 | MS.gene64955:intron | 20.0% |
| !!! | TTTGTTTAGTTCCTTTTTAT+TGG | + | chr5.4:73682103-73682122 | MS.gene64955:intron | 20.0% |
| ! | AAAAAGGAACTAAACAAACA+AGG | - | chr5.4:73682101-73682120 | None:intergenic | 25.0% |
| ! | AAAAGAAAAATGAGTTACCA+AGG | - | chr5.4:73681444-73681463 | None:intergenic | 25.0% |
| ! | AAAAGGAACTAAACAAACAA+GGG | - | chr5.4:73682100-73682119 | None:intergenic | 25.0% |
| ! | AAAGAAAAATGAGTTACCAA+GGG | - | chr5.4:73681443-73681462 | None:intergenic | 25.0% |
| ! | AACTAAGATCTATGTTAAAC+AGG | + | chr5.4:73683631-73683650 | MS.gene64955:CDS | 25.0% |
| ! | AAGTCGTAATTCTTCTTATT+AGG | + | chr5.4:73682971-73682990 | MS.gene64955:intron | 25.0% |
| ! | AATCAATTCTACATGCAAAA+TGG | - | chr5.4:73681482-73681501 | None:intergenic | 25.0% |
| ! | ACAAAATAAATGATGTGGTA+GGG | - | chr5.4:73681949-73681968 | None:intergenic | 25.0% |
| ! | ACCCTAAATTTATTATGAGT+TGG | - | chr5.4:73682641-73682660 | None:intergenic | 25.0% |
| ! | ACTGTACAAAATAAATGATG+TGG | - | chr5.4:73681954-73681973 | None:intergenic | 25.0% |
| ! | ATAAGATTGCAATAAGCTAA+TGG | - | chr5.4:73683118-73683137 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | + | chr5.4:73682001-73682020 | MS.gene64955:intron | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | - | chr5.4:73682020-73682001 | None:intergenic | 25.0% |
| ! | GCCAACTCATAATAAATTTA+GGG | + | chr5.4:73682637-73682656 | MS.gene64955:intron | 25.0% |
| ! | GTTATAAAAGGAATTGTTGA+TGG | + | chr5.4:73682518-73682537 | MS.gene64955:CDS | 25.0% |
| ! | TACAAAATAAATGATGTGGT+AGG | - | chr5.4:73681950-73681969 | None:intergenic | 25.0% |
| ! | TGCCAACTCATAATAAATTT+AGG | + | chr5.4:73682636-73682655 | MS.gene64955:intron | 25.0% |
| ! | TGTTTAACATAGATCTTAGT+TGG | - | chr5.4:73683632-73683651 | None:intergenic | 25.0% |
| !! | AATGTCTTTTCCATTGATAA+CGG | - | chr5.4:73683383-73683402 | None:intergenic | 25.0% |
| !! | CAATAAAACCATTTAGAATG+AGG | - | chr5.4:73682920-73682939 | None:intergenic | 25.0% |
| !! | GCAAAAAACATTTTTACAGT+GGG | - | chr5.4:73681822-73681841 | None:intergenic | 25.0% |
| !! | TAGAATTGATTCTAACGTAA+CGG | + | chr5.4:73681491-73681510 | MS.gene64955:intron | 25.0% |
| !! | TGCAAAAAACATTTTTACAG+TGG | - | chr5.4:73681823-73681842 | None:intergenic | 25.0% |
| !!! | AGAGGTATTGAAATATTTTG+TGG | + | chr5.4:73682574-73682593 | MS.gene64955:intron | 25.0% |
| !!! | CTCATTCTAAATGGTTTTAT+TGG | + | chr5.4:73682918-73682937 | MS.gene64955:intron | 25.0% |
| !!! | TAATTCTGAAATTTGATGTC+AGG | - | chr5.4:73681888-73681907 | None:intergenic | 25.0% |
| !!! | TTCAGAATTAAAGGTACTTT+TGG | + | chr5.4:73681898-73681917 | MS.gene64955:intron | 25.0% |
| !!! | TTTTGATTGTTTTTCTCTCT+AGG | + | chr5.4:73682307-73682326 | MS.gene64955:intron | 25.0% |
| AAGAAAAATGAGTTACCAAG+GGG | - | chr5.4:73681442-73681461 | None:intergenic | 30.0% | |
| AAGAAAGATTCCGTTATCAA+TGG | + | chr5.4:73683370-73683389 | MS.gene64955:CDS | 30.0% | |
| AGAAAACCACAATAGAACAA+AGG | + | chr5.4:73682812-73682831 | MS.gene64955:intron | 30.0% | |
| AGACAACTTCAAGATCAAAA+GGG | - | chr5.4:73683706-73683725 | None:intergenic | 30.0% | |
| ATAGAAGACCTCATTCTAAA+TGG | + | chr5.4:73682909-73682928 | MS.gene64955:intron | 30.0% | |
| ATTCTACATGCAAAATGGAA+TGG | - | chr5.4:73681477-73681496 | None:intergenic | 30.0% | |
| ATTGCTAGTATCTGATATTG+AGG | + | chr5.4:73682721-73682740 | MS.gene64955:intron | 30.0% | |
| GAAGAAGAGAAAATCAAATG+AGG | - | chr5.4:73682496-73682515 | None:intergenic | 30.0% | |
| GACATGTTCAATTGCTTATT+TGG | + | chr5.4:73682998-73683017 | MS.gene64955:intron | 30.0% | |
| GAGAAAATCAAATGAGGAAT+AGG | - | chr5.4:73682490-73682509 | None:intergenic | 30.0% | |
| GTTCAATTGCTTATTTGGAT+AGG | + | chr5.4:73683003-73683022 | MS.gene64955:intron | 30.0% | |
| TACTAATTACCTCTCACATT+AGG | + | chr5.4:73683995-73684014 | MS.gene64955:intron | 30.0% | |
| TCAAACAAGGAAATTACAGA+CGG | + | chr5.4:73682028-73682047 | MS.gene64955:intron | 30.0% | |
| TGTGGTTTATTCTTTCCAAT+TGG | + | chr5.4:73682592-73682611 | MS.gene64955:intron | 30.0% | |
| TTAAGCGCTTATAGCATAAA+CGG | - | chr5.4:73681678-73681697 | None:intergenic | 30.0% | |
| TTCTATATACAAAGACTCGT+GGG | + | chr5.4:73683848-73683867 | MS.gene64955:CDS | 30.0% | |
| TTGCTAGTATCTGATATTGA+GGG | + | chr5.4:73682722-73682741 | MS.gene64955:intron | 30.0% | |
| ! | AGTTTGAGGTATACTTATTG+AGG | + | chr5.4:73682772-73682791 | MS.gene64955:intron | 30.0% |
| ! | ATGATGCGCACTTTTAATAT+GGG | + | chr5.4:73684041-73684060 | MS.gene64955:CDS | 30.0% |
| ! | GATTGATCTGGTAAACATTT+TGG | + | chr5.4:73682237-73682256 | MS.gene64955:intron | 30.0% |
| ! | TCTCTTCTTCAGGTTATAAA+AGG | + | chr5.4:73682506-73682525 | MS.gene64955:intron | 30.0% |
| ! | TTGAGTGTTTCTGTTACTTA+GGG | + | chr5.4:73682278-73682297 | MS.gene64955:intron | 30.0% |
| ! | TTTGAGTGTTTCTGTTACTT+AGG | + | chr5.4:73682277-73682296 | MS.gene64955:intron | 30.0% |
| !! | ATGGTTTTTCACTTGTTAGA+AGG | + | chr5.4:73683452-73683471 | MS.gene64955:CDS | 30.0% |
| !! | CATTTGATTTTCTCTTCTTC+AGG | + | chr5.4:73682496-73682515 | MS.gene64955:intron | 30.0% |
| !! | TTTTTCACTTGTTAGAAGGT+TGG | + | chr5.4:73683456-73683475 | MS.gene64955:intron | 30.0% |
| !!! | GTCTCTTGTCTTTTTGAAAT+AGG | + | chr5.4:73683722-73683741 | MS.gene64955:intron | 30.0% |
| AAATAAATGATGTGGTAGGG+AGG | - | chr5.4:73681946-73681965 | None:intergenic | 35.0% | |
| AGAAAAATGAGTTACCAAGG+GGG | - | chr5.4:73681441-73681460 | None:intergenic | 35.0% | |
| ATATATGCGGGAAAAGTTTG+AGG | + | chr5.4:73682758-73682777 | MS.gene64955:intron | 35.0% | |
| CAAACAAGGAAATTACAGAC+GGG | + | chr5.4:73682029-73682048 | MS.gene64955:intron | 35.0% | |
| CATTTAGATAAGCTTGAGTC+GGG | + | chr5.4:73682838-73682857 | MS.gene64955:intron | 35.0% | |
| CTTCTATATACAAAGACTCG+TGG | + | chr5.4:73683847-73683866 | MS.gene64955:CDS | 35.0% | |
| GACAACTTCAAGATCAAAAG+GGG | - | chr5.4:73683705-73683724 | None:intergenic | 35.0% | |
| GACTTGAATAGATCATTGCA+TGG | - | chr5.4:73682956-73682975 | None:intergenic | 35.0% | |
| GAGACAACTTCAAGATCAAA+AGG | - | chr5.4:73683707-73683726 | None:intergenic | 35.0% | |
| GCATAGCATGAAATATATGC+GGG | + | chr5.4:73682746-73682765 | MS.gene64955:intron | 35.0% | |
| GCATTTAGATAAGCTTGAGT+CGG | + | chr5.4:73682837-73682856 | MS.gene64955:intron | 35.0% | |
| GGCATAGCATGAAATATATG+CGG | + | chr5.4:73682745-73682764 | MS.gene64955:intron | 35.0% | |
| GTTAAAGCTGAATTAGGTCA+AGG | + | chr5.4:73681313-73681332 | MS.gene64955:CDS | 35.0% | |
| GTTGCATCAGTTAAACCTAA+AGG | + | chr5.4:73681178-73681197 | MS.gene64955:CDS | 35.0% | |
| TCATTGAAAGATAAACTCCC+TGG | + | chr5.4:73683572-73683591 | MS.gene64955:CDS | 35.0% | |
| TGCTAGTATCTGATATTGAG+GGG | + | chr5.4:73682723-73682742 | MS.gene64955:intron | 35.0% | |
| TGGATTTCGATCAAATGTCA+GGG | + | chr5.4:73682057-73682076 | MS.gene64955:intron | 35.0% | |
| TTCCTAGATTACTTTGCTAC+TGG | + | chr5.4:73682380-73682399 | MS.gene64955:CDS | 35.0% | |
| ! | AAATGCCTGCAGTTTTCAAA+TGG | + | chr5.4:73683871-73683890 | MS.gene64955:CDS | 35.0% |
| ! | CGTCAATGACATTGTTACTT+CGG | + | chr5.4:73682340-73682359 | MS.gene64955:CDS | 35.0% |
| ! | CTCATTTTCATGAGTTCACT+AGG | + | chr5.4:73681553-73681572 | MS.gene64955:intron | 35.0% |
| ! | GATGATGCGCACTTTTAATA+TGG | + | chr5.4:73684040-73684059 | MS.gene64955:CDS | 35.0% |
| ! | GCACTTTTAATATGGGCATT+GGG | + | chr5.4:73684048-73684067 | MS.gene64955:CDS | 35.0% |
| ! | GTCAATGACATTGTTACTTC+GGG | + | chr5.4:73682341-73682360 | MS.gene64955:CDS | 35.0% |
| ! | GTTGCTGTTAAAGCTGAATT+AGG | + | chr5.4:73681307-73681326 | MS.gene64955:CDS | 35.0% |
| ! | TACAGTTGCAGAAGCTTTAA+TGG | + | chr5.4:73683604-73683623 | MS.gene64955:CDS | 35.0% |
| ! | TCAATGACATTGTTACTTCG+GGG | + | chr5.4:73682342-73682361 | MS.gene64955:CDS | 35.0% |
| ! | TCTGAAATTTGATGTCAGGA+AGG | - | chr5.4:73681884-73681903 | None:intergenic | 35.0% |
| !!! | TGATTTGACTTGTTTTGCGT+AGG | + | chr5.4:73682130-73682149 | MS.gene64955:intron | 35.0% |
| !!! | TTTTAATATGGGCATTGGGA+TGG | + | chr5.4:73684052-73684071 | MS.gene64955:CDS | 35.0% |
| AAGCTATGAATCTCAGCTTG+AGG | - | chr5.4:73681724-73681743 | None:intergenic | 40.0% | |
| AAGGGAATTGCCCATATTAC+TGG | + | chr5.4:73683774-73683793 | MS.gene64955:CDS | 40.0% | |
| AATAACTTCACCTATGCGGT+AGG | - | chr5.4:73684141-73684160 | None:intergenic | 40.0% | |
| AATGGAAAAGACATTACCGC+GGG | + | chr5.4:73683388-73683407 | MS.gene64955:CDS | 40.0% | |
| AATTACCTCTCACATTAGGC+TGG | + | chr5.4:73683999-73684018 | MS.gene64955:intron | 40.0% | |
| ACTGGCATTCATGACACTAT+TGG | + | chr5.4:73682214-73682233 | MS.gene64955:CDS | 40.0% | |
| AGGTCAAGGTCTTACTTACA+AGG | + | chr5.4:73681327-73681346 | MS.gene64955:CDS | 40.0% | |
| AGGTGAAGTTATTAGCGGAA+AGG | + | chr5.4:73684148-73684167 | MS.gene64955:CDS | 40.0% | |
| AGTATTCTATTAGCTGCCTC+TGG | - | chr5.4:73684092-73684111 | None:intergenic | 40.0% | |
| ATGCAGCCTTTGTTCTATTG+TGG | - | chr5.4:73682821-73682840 | None:intergenic | 40.0% | |
| ATGCCTGGTCTATACAAAGA+AGG | + | chr5.4:73683310-73683329 | MS.gene64955:CDS | 40.0% | |
| ATTACCTCTCACATTAGGCT+GGG | + | chr5.4:73684000-73684019 | MS.gene64955:intron | 40.0% | |
| CAAAATGTGGGTGATTGTAG+CGG | - | chr5.4:73681206-73681225 | None:intergenic | 40.0% | |
| CAAGGTTGGAATCTCAAACA+AGG | + | chr5.4:73682015-73682034 | MS.gene64955:intron | 40.0% | |
| CAATCTGATTGTGCTCTTCT+CGG | + | chr5.4:73682548-73682567 | MS.gene64955:CDS | 40.0% | |
| CAATGGAAAAGACATTACCG+CGG | + | chr5.4:73683387-73683406 | MS.gene64955:CDS | 40.0% | |
| CGCATAGGTGAAGTTATTAG+CGG | + | chr5.4:73684143-73684162 | MS.gene64955:CDS | 40.0% | |
| CGCTAATAACTTCACCTATG+CGG | - | chr5.4:73684145-73684164 | None:intergenic | 40.0% | |
| CTGGATTTCGATCAAATGTC+AGG | + | chr5.4:73682056-73682075 | MS.gene64955:intron | 40.0% | |
| CTGGCATTCATGACACTATT+GGG | + | chr5.4:73682215-73682234 | MS.gene64955:CDS | 40.0% | |
| GAAGGTGAGTATGATCTTAG+TGG | + | chr5.4:73683328-73683347 | MS.gene64955:CDS | 40.0% | |
| GACCAGTAGCAAAGTAATCT+AGG | - | chr5.4:73682385-73682404 | None:intergenic | 40.0% | |
| GATTGCAATGCGCAAAATGT+GGG | - | chr5.4:73681218-73681237 | None:intergenic | 40.0% | |
| GATTTCGATCAAATGTCAGG+GGG | + | chr5.4:73682059-73682078 | MS.gene64955:intron | 40.0% | |
| GCTAGTATCTGATATTGAGG+GGG | + | chr5.4:73682724-73682743 | MS.gene64955:intron | 40.0% | |
| GGATTTCGATCAAATGTCAG+GGG | + | chr5.4:73682058-73682077 | MS.gene64955:intron | 40.0% | |
| GGTGAAGTTATTAGCGGAAA+GGG | + | chr5.4:73684149-73684168 | MS.gene64955:CDS | 40.0% | |
| GTATGATCTTAGTGGTTGTG+CGG | + | chr5.4:73683336-73683355 | MS.gene64955:CDS | 40.0% | |
| GTCATGAATGCCAGTTTCAA+AGG | - | chr5.4:73682209-73682228 | None:intergenic | 40.0% | |
| TCAAGTGGAGTTCACTCTAA+TGG | + | chr5.4:73683433-73683452 | MS.gene64955:CDS | 40.0% | |
| TCACCTTCTTTGTATAGACC+AGG | - | chr5.4:73683316-73683335 | None:intergenic | 40.0% | |
| TGAAGCCATTTGAAAACTGC+AGG | - | chr5.4:73683879-73683898 | None:intergenic | 40.0% | |
| TGACACTATTGGGATTGATC+TGG | + | chr5.4:73682225-73682244 | MS.gene64955:CDS | 40.0% | |
| TGTTCGAAGAATTGCCAAGA+TGG | + | chr5.4:73681384-73681403 | MS.gene64955:CDS | 40.0% | |
| TTAGAGTGAACTCCACTTGA+TGG | - | chr5.4:73683433-73683452 | None:intergenic | 40.0% | |
| TTGACATAGTCAGCAAAGGA+GGG | + | chr5.4:73683748-73683767 | MS.gene64955:CDS | 40.0% | |
| ! | AAACCTTCTGGAAAAACTCG+AGG | - | chr5.4:73683822-73683841 | None:intergenic | 40.0% |
| ! | AGGTGATTTTCCCAAATGAC+AGG | - | chr5.4:73681926-73681945 | None:intergenic | 40.0% |
| ! | AGTTTTCAAATGGCTTCAGC+AGG | + | chr5.4:73683881-73683900 | MS.gene64955:CDS | 40.0% |
| ! | ATTCCTCGAGTTTTTCCAGA+AGG | + | chr5.4:73683816-73683835 | MS.gene64955:CDS | 40.0% |
| ! | CAATGACATTGTTACTTCGG+GGG | + | chr5.4:73682343-73682362 | MS.gene64955:CDS | 40.0% |
| ! | CACATTTTGCGCATTGCAAT+CGG | + | chr5.4:73681217-73681236 | MS.gene64955:CDS | 40.0% |
| ! | CGAGTTTTTCCAGAAGGTTT+TGG | + | chr5.4:73683822-73683841 | MS.gene64955:CDS | 40.0% |
| ! | CGCACTTTTAATATGGGCAT+TGG | + | chr5.4:73684047-73684066 | MS.gene64955:CDS | 40.0% |
| ! | GGTAGAGTACTTGAGAAAAG+CGG | + | chr5.4:73683545-73683564 | MS.gene64955:intron | 40.0% |
| ! | GGTGATTTTCCCAAATGACA+GGG | - | chr5.4:73681925-73681944 | None:intergenic | 40.0% |
| ! | GTGATTTTCCCAAATGACAG+GGG | - | chr5.4:73681924-73681943 | None:intergenic | 40.0% |
| ! | TATTTTCCAACATACCCCAG+TGG | + | chr5.4:73681796-73681815 | MS.gene64955:intron | 40.0% |
| !! | ATAGAAGCACCAAAACCTTC+TGG | - | chr5.4:73683834-73683853 | None:intergenic | 40.0% |
| !! | CTTATCGGTTTACCATCAAG+TGG | + | chr5.4:73683418-73683437 | MS.gene64955:CDS | 40.0% |
| AGTTGTGCGTGTGTGAGAAA+AGG | - | chr5.4:73683206-73683225 | None:intergenic | 45.0% | |
| ATCTTAGTGGTTGTGCGGTT+GGG | + | chr5.4:73683341-73683360 | MS.gene64955:CDS | 45.0% | |
| ATTGCCCATATTACTGGTGG+CGG | + | chr5.4:73683780-73683799 | MS.gene64955:CDS | 45.0% | |
| CGATTGCAATGCGCAAAATG+TGG | - | chr5.4:73681219-73681238 | None:intergenic | 45.0% | |
| CTTGACATAGTCAGCAAAGG+AGG | + | chr5.4:73683747-73683766 | MS.gene64955:CDS | 45.0% | |
| GAAACCGCCACCAGTAATAT+GGG | - | chr5.4:73683787-73683806 | None:intergenic | 45.0% | |
| GAAATTACAGACGGGCAAAC+TGG | + | chr5.4:73682037-73682056 | MS.gene64955:intron | 45.0% | |
| GGAATTGCCCATATTACTGG+TGG | + | chr5.4:73683777-73683796 | MS.gene64955:CDS | 45.0% | |
| GGATGTTGCTGAACAGGTAA+TGG | + | chr5.4:73682415-73682434 | MS.gene64955:intron | 45.0% | |
| GGTCTTACTTACAAGGACTC+CGG | + | chr5.4:73681334-73681353 | MS.gene64955:CDS | 45.0% | |
| GGTGATTCATATCTCGTTGC+TGG | + | chr5.4:73682151-73682170 | MS.gene64955:intron | 45.0% | |
| GTGCTTGACATAGTCAGCAA+AGG | + | chr5.4:73683744-73683763 | MS.gene64955:CDS | 45.0% | |
| GTTCAGCAACATCCACATCA+AGG | - | chr5.4:73682409-73682428 | None:intergenic | 45.0% | |
| GTTGGCAAGAATAGACGAGA+CGG | - | chr5.4:73682623-73682642 | None:intergenic | 45.0% | |
| TCTCAGCTTGAGGTCTTGAT+AGG | - | chr5.4:73681714-73681733 | None:intergenic | 45.0% | |
| TGAAACCGCCACCAGTAATA+TGG | - | chr5.4:73683788-73683807 | None:intergenic | 45.0% | |
| TGACATAGTCAGCAAAGGAG+GGG | + | chr5.4:73683749-73683768 | MS.gene64955:CDS | 45.0% | |
| TGATGTGGATGTTGCTGAAC+AGG | + | chr5.4:73682409-73682428 | MS.gene64955:CDS | 45.0% | |
| ! | ACATTTTTACAGTGGGCCAC+TGG | - | chr5.4:73681815-73681834 | None:intergenic | 45.0% |
| ! | ATTTTGCGCATTGCAATCGG+CGG | + | chr5.4:73681220-73681239 | MS.gene64955:CDS | 45.0% |
| ! | ATTTTTACAGTGGGCCACTG+GGG | - | chr5.4:73681813-73681832 | None:intergenic | 45.0% |
| ! | CATTTTTACAGTGGGCCACT+GGG | - | chr5.4:73681814-73681833 | None:intergenic | 45.0% |
| ! | TACTTTTGGCCCCTGTCATT+TGG | + | chr5.4:73681912-73681931 | MS.gene64955:intron | 45.0% |
| ! | TATCTCGTTGCTGGTACTGA+TGG | + | chr5.4:73682160-73682179 | MS.gene64955:CDS | 45.0% |
| !! | ACTTTTGGCCCCTGTCATTT+GGG | + | chr5.4:73681913-73681932 | MS.gene64955:intron | 45.0% |
| !! | GTAATGGATGTGCTTCTAGC+TGG | + | chr5.4:73682431-73682450 | MS.gene64955:intron | 45.0% |
| !! | GTGATGCTTGCCTTTGAAAC+TGG | + | chr5.4:73682196-73682215 | MS.gene64955:CDS | 45.0% |
| !! | TTGCTGGTACTGATGGTGTT+GGG | + | chr5.4:73682167-73682186 | MS.gene64955:CDS | 45.0% |
| ACAGAGAAAGCCTACCGCAT+AGG | + | chr5.4:73684128-73684147 | MS.gene64955:CDS | 50.0% | |
| ACCAGCGTCAATGTCAACTC+CGG | - | chr5.4:73681356-73681375 | None:intergenic | 50.0% | |
| AGAATTGCCAAGATGGCTCC+CGG | + | chr5.4:73681391-73681410 | MS.gene64955:CDS | 50.0% | |
| AGTCAGCAAAGGAGGGGTAA+AGG | + | chr5.4:73683755-73683774 | MS.gene64955:CDS | 50.0% | |
| GACGAGACGGCAAATCCAAT+TGG | - | chr5.4:73682610-73682629 | None:intergenic | 50.0% | |
| GATAAGCTTGAGTCGGGTAG+AGG | + | chr5.4:73682844-73682863 | MS.gene64955:intron | 50.0% | |
| GATCTTAGTGGTTGTGCGGT+TGG | + | chr5.4:73683340-73683359 | MS.gene64955:CDS | 50.0% | |
| GTCAGCAAAGGAGGGGTAAA+GGG | + | chr5.4:73683756-73683775 | MS.gene64955:CDS | 50.0% | |
| GTGATTGTAGCGGTGCCTTT+AGG | - | chr5.4:73681196-73681215 | None:intergenic | 50.0% | |
| TCTGATTGTGCTCTTCTCGG+AGG | + | chr5.4:73682551-73682570 | MS.gene64955:CDS | 50.0% | |
| TCTTCCCAGCCTAATGTGAG+AGG | - | chr5.4:73684007-73684026 | None:intergenic | 50.0% | |
| TGCTACTGGTCACCTTGATG+TGG | + | chr5.4:73682394-73682413 | MS.gene64955:CDS | 50.0% | |
| TTCGGTGGTTTATTCCCCCT+TGG | + | chr5.4:73681424-73681443 | MS.gene64955:CDS | 50.0% | |
| TTTCAGACTGCAGAGATGCC+TGG | + | chr5.4:73683295-73683314 | MS.gene64955:intron | 50.0% | |
| ! | GGATGTGCTTCTAGCTGGTT+TGG | + | chr5.4:73682436-73682455 | MS.gene64955:intron | 50.0% |
| ! | TACTGATGGTGTTGGGACGA+AGG | + | chr5.4:73682174-73682193 | MS.gene64955:CDS | 50.0% |
| ! | TCTATTAGCTGCCTCTGGAG+TGG | - | chr5.4:73684087-73684106 | None:intergenic | 50.0% |
| !! | GTTGCTGGTACTGATGGTGT+TGG | + | chr5.4:73682166-73682185 | MS.gene64955:CDS | 50.0% |
| ACCGATAAGAATGTCGCCCG+CGG | - | chr5.4:73683407-73683426 | None:intergenic | 55.0% | |
| ACCGCGGGCGACATTCTTAT+CGG | + | chr5.4:73683403-73683422 | MS.gene64955:CDS | 55.0% | |
| CAACTGTAGTGCTAGCGCCA+GGG | - | chr5.4:73683592-73683611 | None:intergenic | 55.0% | |
| GAATTGCCAAGATGGCTCCC+GGG | + | chr5.4:73681392-73681411 | MS.gene64955:CDS | 55.0% | |
| TCCGGAGTTGACATTGACGC+TGG | + | chr5.4:73681352-73681371 | MS.gene64955:CDS | 55.0% | |
| TTGTGCTCTTCTCGGAGGAG+AGG | + | chr5.4:73682556-73682575 | MS.gene64955:CDS | 55.0% | |
| AAGATGGCTCCCGGGATTGG+TGG | + | chr5.4:73681400-73681419 | MS.gene64955:CDS | 60.0% | |
| ACCAATCCCGGGAGCCATCT+TGG | - | chr5.4:73681401-73681420 | None:intergenic | 60.0% | |
| ACCACCGAAGCCACCAATCC+CGG | - | chr5.4:73681413-73681432 | None:intergenic | 60.0% | |
| AGTGGGCCACTGGGGTATGT+TGG | - | chr5.4:73681805-73681824 | None:intergenic | 60.0% | |
| GCAACTGTAGTGCTAGCGCC+AGG | - | chr5.4:73683593-73683612 | None:intergenic | 60.0% | |
| GGTCCTTGTAGCCACTCCAG+AGG | + | chr5.4:73684073-73684092 | MS.gene64955:CDS | 60.0% | |
| !! | CTGCCTCTGGAGTGGCTACA+AGG | - | chr5.4:73684079-73684098 | None:intergenic | 60.0% |
| CCACCGAAGCCACCAATCCC+GGG | - | chr5.4:73681412-73681431 | None:intergenic | 65.0% | |
| GCCAAGATGGCTCCCGGGAT+TGG | + | chr5.4:73681397-73681416 | MS.gene64955:CDS | 65.0% | |
| ! | GCTCCCGGGATTGGTGGCTT+CGG | + | chr5.4:73681406-73681425 | MS.gene64955:CDS | 65.0% |
| ! | CCCGGGATTGGTGGCTTCGG+TGG | + | chr5.4:73681409-73681428 | MS.gene64955:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 73681136 | 73684187 | 73681136 | ID=MS.gene64955 |
| chr5.4 | mRNA | 73681136 | 73684187 | 73681136 | ID=MS.gene64955.t1;Parent=MS.gene64955 |
| chr5.4 | exon | 73681136 | 73681445 | 73681136 | ID=MS.gene64955.t1.exon1;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73681136 | 73681445 | 73681136 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| chr5.4 | exon | 73682152 | 73682246 | 73682152 | ID=MS.gene64955.t1.exon2;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73682152 | 73682246 | 73682152 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| chr5.4 | exon | 73682329 | 73682430 | 73682329 | ID=MS.gene64955.t1.exon3;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73682329 | 73682430 | 73682329 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| chr5.4 | exon | 73682518 | 73682577 | 73682518 | ID=MS.gene64955.t1.exon4;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73682518 | 73682577 | 73682518 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| chr5.4 | exon | 73683301 | 73683473 | 73683301 | ID=MS.gene64955.t1.exon5;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73683301 | 73683473 | 73683301 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| chr5.4 | exon | 73683550 | 73683652 | 73683550 | ID=MS.gene64955.t1.exon6;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73683550 | 73683652 | 73683550 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| chr5.4 | exon | 73683744 | 73683902 | 73683744 | ID=MS.gene64955.t1.exon7;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73683744 | 73683902 | 73683744 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| chr5.4 | exon | 73684017 | 73684187 | 73684017 | ID=MS.gene64955.t1.exon8;Parent=MS.gene64955.t1 |
| chr5.4 | CDS | 73684017 | 73684187 | 73684017 | ID=cds.MS.gene64955.t1;Parent=MS.gene64955.t1 |
| Gene Sequence |
| Protein sequence |
