AlfalfaGEDB | MS.gene65037

M. sativa cultivar XinJiangDaYe / MS.gene65037

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF01453.27 PF07714.20 PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65037.t1	XP_013448711.1	92.4	844	63	1	1	844	7	849	0.00E+00	1590.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65037.t1	Q9SXB4	49.2	845	385	13	10	844	10	820	5.5e-222	772.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65037.t1	A0A072U0S1	92.4	844	63	1	1	844	7	849	0.0e+00	1590.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009019	MS.gene65037	PPI
MS.gene028585	MS.gene65037	PPI
MS.gene028586	MS.gene65037	PPI
MS.gene028589	MS.gene65037	PPI
MS.gene028590	MS.gene65037	PPI
MS.gene028591	MS.gene65037	PPI
MS.gene028592	MS.gene65037	PPI
MS.gene028593	MS.gene65037	PPI
MS.gene038454	MS.gene65037	PPI
MS.gene052587	MS.gene65037	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene65037.t1	MTR_7g056647	92.417	844	63	1	1	844	7	849	1599
MS.gene65037.t1	MTR_7g056667	79.408	845	160	5	1	844	1	832	1345
MS.gene65037.t1	MTR_7g056647	93.023	688	47	1	157	844	1	687	1310
MS.gene65037.t1	MTR_7g056510	76.034	822	183	6	24	844	14	822	1274
MS.gene65037.t1	MTR_7g056640	74.727	823	169	4	23	844	51	835	1265
MS.gene65037.t1	MTR_7g056680	75.385	845	181	4	1	844	1	819	1265
MS.gene65037.t1	MTR_7g056680	75.385	845	177	4	1	844	1	815	1264
MS.gene65037.t1	MTR_7g056680	75.000	852	177	5	1	844	1	824	1264
MS.gene65037.t1	MTR_7g056680	75.000	852	173	5	1	844	1	820	1262
MS.gene65037.t1	MTR_7g056663	72.137	847	230	5	1	844	1	844	1225

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene65037.t1	AT1G11330	48.984	837	390	16	23	844	26	840	802
MS.gene65037.t1	AT1G11300	49.180	854	390	13	1	844	1	820	801
MS.gene65037.t1	AT1G11330	48.626	837	395	15	23	844	26	842	801
MS.gene65037.t1	AT1G11300	48.712	854	379	13	1	844	1	805	790
MS.gene65037.t1	AT1G11303	48.391	839	389	13	16	844	16	820	768
MS.gene65037.t1	AT1G11350	47.909	837	407	13	18	844	13	830	749
MS.gene65037.t1	AT1G11330	49.796	735	335	14	23	743	26	740	726
MS.gene65037.t1	AT4G21390	44.989	878	420	23	1	844	1	849	717
MS.gene65037.t1	AT1G61610	44.367	861	438	16	3	844	4	842	698
MS.gene65037.t1	AT4G21390	45.812	788	367	21	1	757	1	759	660

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Find 163 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAGTTTCTTCTTC+CGG	0.328326	7.1:+44490485	None:intergenic
AAAAGACTTTCTAGAGCATC+TGG	0.413825	7.1:-44491217	MS.gene65037:CDS
AAAATAAACTCCTAGATTGG+AGG	0.513577	7.1:-44490877	MS.gene65037:CDS
AAAATGTTACTATGATGACT+AGG	0.623786	7.1:+44490256	None:intergenic
AAACATCACACTCTGAATCT+CGG	0.571565	7.1:+44492283	None:intergenic
AAACTTGGACATGGTGGTTT+TGG	0.266506	7.1:-44491363	MS.gene65037:CDS
AAAGATGGTAACTTCACCTT+TGG	0.372398	7.1:-44492999	MS.gene65037:CDS
AAAGGTGAAGTTACCATCTT+TGG	0.238275	7.1:+44493001	None:intergenic
AAAGTGGTATATTACCTGGG+TGG	0.720842	7.1:+44491663	None:intergenic
AAATGCTACAAATCGCTATG+TGG	0.543419	7.1:-44492961	MS.gene65037:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTGAGTTTCTTCTTC+CGG	+	chr7.1:44492682-44492701	None:intergenic	30.0%
AAAATAAACTCCTAGATTGG+AGG	-	chr7.1:44492287-44492306	MS.gene65037:CDS	30.0%
AAGAATGGAATAGAAACAAC+TGG	-	chr7.1:44490991-44491010	MS.gene65037:intron	30.0%
AGAAAGAAGTTCATGTTACA+TGG	-	chr7.1:44490853-44490872	MS.gene65037:CDS	30.0%
AGTATTAGAAGAAAAACGGT+GGG	-	chr7.1:44490821-44490840	MS.gene65037:CDS	30.0%
AGTCTCAATCTACAATCATA+TGG	-	chr7.1:44490238-44490257	MS.gene65037:CDS	30.0%
ATCCACCTGTATTAAATTGT+TGG	+	chr7.1:44491656-44491675	None:intergenic	30.0%
ATCTATCAGTTGAATTCACA+AGG	-	chr7.1:44490798-44490817	MS.gene65037:CDS	30.0%
ATTAAACCTTCAGCAAAATC+TGG	+	chr7.1:44491122-44491141	None:intergenic	30.0%
CAAGAAGTTTAACAAGATTG+CGG	+	chr7.1:44492027-44492046	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	44490033	44493153	44490033	ID=MS.gene65037
chr7.1	mRNA	44490033	44493153	44490033	ID=MS.gene65037.t1;Parent=MS.gene65037
chr7.1	exon	44491875	44493153	44491875	ID=MS.gene65037.t1.exon1;Parent=MS.gene65037.t1
chr7.1	CDS	44491875	44493153	44491875	ID=cds.MS.gene65037.t1;Parent=MS.gene65037.t1
chr7.1	exon	44491678	44491791	44491678	ID=MS.gene65037.t1.exon2;Parent=MS.gene65037.t1
chr7.1	CDS	44491678	44491791	44491678	ID=cds.MS.gene65037.t1;Parent=MS.gene65037.t1
chr7.1	exon	44491350	44491585	44491350	ID=MS.gene65037.t1.exon3;Parent=MS.gene65037.t1
chr7.1	CDS	44491350	44491585	44491350	ID=cds.MS.gene65037.t1;Parent=MS.gene65037.t1
chr7.1	exon	44491062	44491272	44491062	ID=MS.gene65037.t1.exon4;Parent=MS.gene65037.t1
chr7.1	CDS	44491062	44491272	44491062	ID=cds.MS.gene65037.t1;Parent=MS.gene65037.t1
chr7.1	exon	44490671	44490908	44490671	ID=MS.gene65037.t1.exon5;Parent=MS.gene65037.t1
chr7.1	CDS	44490671	44490908	44490671	ID=cds.MS.gene65037.t1;Parent=MS.gene65037.t1
chr7.1	exon	44490449	44490599	44490449	ID=MS.gene65037.t1.exon6;Parent=MS.gene65037.t1
chr7.1	CDS	44490449	44490599	44490449	ID=cds.MS.gene65037.t1;Parent=MS.gene65037.t1
chr7.1	exon	44490033	44490338	44490033	ID=MS.gene65037.t1.exon7;Parent=MS.gene65037.t1
chr7.1	CDS	44490033	44490338	44490033	ID=cds.MS.gene65037.t1;Parent=MS.gene65037.t1

Gene Sequence

>MS.gene65037

ATGAATTTCAGCAACTGTGCATATTTGTTCTCTGTCTTGTTCATTTTGTTTTGCTATTTTCTAAATGTTAGTCTTGGTATAAACATCATTACATCATCTCAATTTATCAAAGACCCTGAAACTCTAATCTCCAAAGATGGTAACTTCACCTTTGGATTCTTTAGCCGTAAAAATGCTACAAATCGCTATGTGGGGATTTGGTGGAAGTCTCAATCTACAATCATATGGGTGGCTAACAGAAACCAACCGCTGAATGATTCTAATGGGATCGTCACAATATCCGAAGATGGAAATCTTGTGGTATTGAATGGACAGAAACAAGTCATATGGTCATCAAATGTTTCCAACATAGCAACAAATACAAGTTCTCAGTTTTCAGACTATGGCAACCTTGTCCTTTTGGAGAGCACAACAGGAAATATGTTATGGCAGAGTATTCAGCAACCGACAGATACATTACTGCCTGGTATGAAACTTTCTGTCAACAAAAGAACAGGTAAGAGTGTAAAAATGAAATCATGGAAAAGCTCTTCTGACCCATCCATCGGCAACTTCTCTTCTAGTAATATTGAACGCCAACATATACATGAAGTCTTCATTTGGAATGAAACTCGACCATCTTGGCGCAGTGGTCCCTGGAATGGTGGTGTCTTCACTGGGATACAGGCAATGGCAATGGCATATTTTTTTGATTTTCAAGTTGGAGATGATGGAGAAGGGAGTACTAGTATATATTACACTATACGAAATGATGTGGGATTAGTGATCTATCAGTTGAATTCACAAGGAGTATTAGAAGAAAAACGGTGGGATGATGAGAAGAAAGAAGTTCATGTTACATGGACAAGCCGAGATTCAGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAATCTGTAGTTCATTGACCTCACCAATATGCAGCTGTTTGAAAGGATTTGAACCTAGGAGCATACAAGAATGGAATAGAAACAACTGGACAGGTGGGTGTGTTAGGAAGACACCTTTGCAGTGCGAACGGGTCAACAATAAAACCACAAGTACAAAGGAAGATGGGATTTTGAAACTACAGACGATTAAAGTTCCAGATTTTGCTGAAGGTTTAATCGTTACACCTGACATATGCAGAAGCCTATGCTTGGAGAATTGCTCTTGCCTTGCATATTCTCATGATGATGGGATTGGCTGTATGCTGTGGACCGGAAATTTACTTGACATACAACAGCTTGAAATGGGAGGACTTGATCTATATGTTCGTATAGCCCATGAAGCACCTGGTATGCTCTTAGGTCATTAACTTGATTTTATCTCTTATGAGTTAAGACTCGATTGAATTGCTTATATTTTAAAATTTCAATAGATACAGATAAAAGGAGAACCAAGACAATCATCATTTTAAGTACAGTGATAATTGGCACTATCATAATTGTTATTTGTGCATATATCATTTGGAGAAGTACGGCAAACCACCCAGGTAATATACCACTTTCGTGTATTCAACTTGACACGTAAAATTTACTTTCTATTGATGAGGAACTAAGCTTAAACTATGTGTTTTTGCTGCAGCTAAACTGTGGCTCTTCACTAAATCAGCAAGGAAAAAGAACAACAAAGCTTTCCAACAATTTAATACAGGTGGATCACCAAATGTTTATTCTAGTGGTGACAACGTAATCGGAGAAATGTCCCAAGTTAAACTGCAAGAGCTATTAATATTTGATTTTGAGAAGCTTGCAACTGCCACTAACAACTTCCACTTGTCTAACAAACTTGGACATGGTGGTTTTGGTATAGTATACAAGGTAACTTAAGTTAATGCAAACATTTATAAATGTTTTAAAACAATTGTCTATAGTTGTCACATAATATTTTCTTCTAGGGAAAACTGCAAGATGGTCAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGTTGGAGGAATTCATGAATGAAGTAGTGGTTCTTTGTAAGCTTCAACACCGCAATCTTGTTAAACTTCTTGGTTGTTGTATTGAAGGTGTCGAAAAGATGCTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTGGTTAGTTCTTTGAAACTTTCTTGTATAAAATATTTTAAGAATAAAACTGCCAGTGAGTTTTCCTGGAAGCATGCTTATTGACTGATTTTGATGACTTCACTTCATAATTTAATATATGTTCAAAATTATTATAATGCTACCCTTCTTTTTTAGATCCATCAAAAAATAAACTCCTAGATTGGAGGACACGGCATAACATTATAGAAGGAATAGCTCGAGGATTGCTGTATCTTCACAGAGATTCTAGACTAAGAATTATTCATAGAGATTTGAAGGCAAGTAATGTCTTGTTAGATGAAGAACTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGGGAGATGATCAAGTCAATACTTCAAGAATTGTCGGAACTTAGTAAGTGTGCCTGCCAAAACTTTTACTTTAGCAGTAATAACTGAAGAATAAACTGTTACTTGTCAACGCAGTGGCTATATGTCTCCTGAATATGCAATGCAAGGATTGTTTTCTGAGAAAACAGATGTTTTTAGCTTTGGTGTTTTGATCCTAGAGATTGTTACCGGAAGAAGAAACTCAAGTTTTTACGAGGATGAGCATAATCTGAGCCTTTTAGGATATGTAAGCCTCAACGTACCATTTTTAGCTCAATTATGTCATGTTTTTCTTCTTTTGTTACACACCATTCAAATGTCTGATTATTTCTTTCCTTTTTCTTTTATCTCAATTAGGCTTGGATACAATGGAGGGAAGACAATATCTTATCTCTAATAGATCAAGAAATAGATGATCCTAGTCATCATAGTAACATTTTAAGGTACATACACATAGGACTTTTGTGTGTACAAGAAATTGCTGTAGATAGACCCACTATGGCTGCAGTAATTTCTATGCTGAACAGTGAAGGTGTATTACTTGCTCCTAGTAAACCTGCATTCATCCTGAGGCAGAATATGTTGAATTCAAACTGGCCTGAAGAATGTCAAAATGTTAGTTCTATCAATAATGTTACTATGACAGAAACATGTGGCAGATAG

Protein sequence

>MS.gene65037.t1

MNFSNCAYLFSVLFILFCYFLNVSLGINIITSSQFIKDPETLISKDGNFTFGFFSRKNATNRYVGIWWKSQSTIIWVANRNQPLNDSNGIVTISEDGNLVVLNGQKQVIWSSNVSNIATNTSSQFSDYGNLVLLESTTGNMLWQSIQQPTDTLLPGMKLSVNKRTGKSVKMKSWKSSSDPSIGNFSSSNIERQHIHEVFIWNETRPSWRSGPWNGGVFTGIQAMAMAYFFDFQVGDDGEGSTSIYYTIRNDVGLVIYQLNSQGVLEEKRWDDEKKEVHVTWTSRDSECDVYGICGAFAICSSLTSPICSCLKGFEPRSIQEWNRNNWTGGCVRKTPLQCERVNNKTTSTKEDGILKLQTIKVPDFAEGLIVTPDICRSLCLENCSCLAYSHDDGIGCMLWTGNLLDIQQLEMGGLDLYVRIAHEAPDTDKRRTKTIIILSTVIIGTIIIVICAYIIWRSTANHPAKLWLFTKSARKKNNKAFQQFNTGGSPNVYSSGDNVIGEMSQVKLQELLIFDFEKLATATNNFHLSNKLGHGGFGIVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVLCKLQHRNLVKLLGCCIEGVEKMLMYEYMPNKSLDAFIFDPSKNKLLDWRTRHNIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDEELNPKISDFGMARIFGGGDDQVNTSRIVGTYGYMSPEYAMQGLFSEKTDVFSFGVLILEIVTGRRNSSFYEDEHNLSLLGYAWIQWREDNILSLIDQEIDDPSHHSNILRYIHIGLLCVQEIAVDRPTMAAVISMLNSEGVLLAPSKPAFILRQNMLNSNWPEECQNVSSINNVTMTETCGR