Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65436.t1 | XP_013454562.1 | 97.1 | 487 | 14 | 0 | 1 | 487 | 1 | 487 | 7.40E-263 | 916 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65436.t1 | Q9FZ45 | 67.1 | 487 | 147 | 4 | 1 | 487 | 1 | 474 | 1.1e-171 | 604.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65436.t1 | A0A072UHJ0 | 97.1 | 487 | 14 | 0 | 1 | 487 | 1 | 487 | 5.3e-263 | 916.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053168 | MS.gene65436 | 0.969752 | 1.38E-130 | -1.69E-46 |
| MS.gene054557 | MS.gene65436 | 0.996086 | 3.09E-223 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65436.t1 | MTR_4g007930 | 97.741 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 0.0 | 973 |
| MS.gene65436.t1 | MTR_4g007930 | 86.242 | 487 | 16 | 1 | 1 | 487 | 1 | 436 | 0.0 | 836 |
| MS.gene65436.t1 | MTR_4g005510 | 79.466 | 487 | 91 | 3 | 1 | 487 | 1 | 478 | 0.0 | 786 |
| MS.gene65436.t1 | MTR_2g025190 | 47.551 | 490 | 192 | 12 | 1 | 487 | 1 | 428 | 6.28e-141 | 412 |
| MS.gene65436.t1 | MTR_4g094505 | 80.734 | 109 | 21 | 0 | 351 | 459 | 35 | 143 | 4.48e-60 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65436.t1 | AT1G16860 | 70.842 | 487 | 129 | 6 | 1 | 487 | 1 | 474 | 0.0 | 689 |
| MS.gene65436.t1 | AT1G78880 | 71.047 | 487 | 122 | 7 | 1 | 487 | 1 | 468 | 0.0 | 688 |
| MS.gene65436.t1 | AT4G22290 | 48.577 | 492 | 201 | 12 | 1 | 487 | 1 | 445 | 1.07e-141 | 414 |
Find 157 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTCCAGTCTGGTTTA+AGG | 0.132427 | 4.3:-87660241 | MS.gene65436:CDS |
| ATACGCATCTGGGGACTTTC+TGG | 0.148129 | 4.3:+87660527 | None:intergenic |
| CTTTCACTTGGAATACTTAT+TGG | 0.168647 | 4.3:-87661903 | MS.gene65436:CDS |
| TTGGGGAAGAAGAGCTATTA+TGG | 0.228841 | 4.3:-87661884 | MS.gene65436:CDS |
| TTTCACTTGGAATACTTATT+GGG | 0.234243 | 4.3:-87661902 | MS.gene65436:CDS |
| CACACATCGGCGACTTTCTT+GGG | 0.239546 | 4.3:-87660449 | MS.gene65436:CDS |
| CGTGATGGTGCACCTGTTAT+TGG | 0.255697 | 4.3:+87662498 | None:intergenic |
| TTTGTCATGGGTTTCATTGC+TGG | 0.264595 | 4.3:-87662003 | MS.gene65436:CDS |
| CTCTGGAGATAACTCTTCTT+TGG | 0.287381 | 4.3:+87660142 | None:intergenic |
| CCACACATCGGCGACTTTCT+TGG | 0.287717 | 4.3:-87660450 | MS.gene65436:CDS |
| TTCTTGGGGCCTTAGATTGC+TGG | 0.290905 | 4.3:-87660434 | MS.gene65436:CDS |
| AGCAATGGCCTATATGTATC+AGG | 0.299693 | 4.3:-87662663 | MS.gene65436:CDS |
| TTTATGTCTCCACCAGTATA+TGG | 0.303301 | 4.3:+87662588 | None:intergenic |
| ATTGTGGTTGTGATTCTCTT+TGG | 0.305200 | 4.3:-87661940 | MS.gene65436:CDS |
| GGCTCAAAATCTAGAAAATC+TGG | 0.307877 | 4.3:-87662522 | MS.gene65436:CDS |
| CCAACTGGACGTCAACATTC+TGG | 0.310059 | 4.3:-87662270 | MS.gene65436:CDS |
| GTTTAACGGGCCGGATGTTA+TGG | 0.313922 | 4.3:+87662200 | None:intergenic |
| CCATCACGAACAACATCTTT+TGG | 0.315052 | 4.3:-87662483 | MS.gene65436:CDS |
| AACCGGTATGACATCATTCT+TGG | 0.315437 | 4.3:+87659792 | None:intergenic |
| AAGCTCGGAGTCTGGATAAT+TGG | 0.320920 | 4.3:+87661852 | None:intergenic |
| GAGAACCGTGACAGCTTGAT+TGG | 0.337027 | 4.3:+87662095 | None:intergenic |
| ACCCTTTCCTTCGGCTGCTC+TGG | 0.338129 | 4.3:+87662636 | None:intergenic |
| TCACAAAAGAAATCTAATTC+CGG | 0.341069 | 4.3:-87662357 | MS.gene65436:CDS |
| GGAAGCACGGTGAGTGTAAT+GGG | 0.343936 | 4.3:-87659946 | MS.gene65436:CDS |
| CAGTGGCAACCTGTTGTAAT+TGG | 0.347392 | 4.3:+87659874 | None:intergenic |
| GGAGGAGCCGGTTCACATTC+CGG | 0.350207 | 4.3:-87662462 | MS.gene65436:CDS |
| GTGATGAATATTCCTTTAGA+AGG | 0.351769 | 4.3:-87662065 | MS.gene65436:CDS |
| TAGGAAAGTGTCCGGTCCTT+TGG | 0.356482 | 4.3:-87662163 | MS.gene65436:CDS |
| AGATTTCCAGTCTGGTTTAA+GGG | 0.356876 | 4.3:-87660240 | MS.gene65436:CDS |
| AACTCACTTCCAGCAATCTA+AGG | 0.364920 | 4.3:+87660425 | None:intergenic |
| TCCGGCCCGTTAAACTCTTC+TGG | 0.365621 | 4.3:-87662192 | MS.gene65436:CDS |
| GGACAATTTGTGAAAGTCTC+TGG | 0.369526 | 4.3:-87661814 | MS.gene65436:CDS |
| TACATCTCAGATTTCCAGTC+TGG | 0.374160 | 4.3:-87660248 | MS.gene65436:CDS |
| ACTTCAGGTTCCATGTCTAT+TGG | 0.376754 | 4.3:-87662399 | MS.gene65436:CDS |
| CGGGCTATGTATACAACTTC+AGG | 0.380080 | 4.3:-87662414 | MS.gene65436:CDS |
| TGTTGATGTATATACGCATC+TGG | 0.385504 | 4.3:+87660516 | None:intergenic |
| CACAAAAGAAATCTAATTCC+GGG | 0.398376 | 4.3:-87662356 | MS.gene65436:CDS |
| CTTTGGAAAATTCCTTCTAA+AGG | 0.400379 | 4.3:+87662053 | None:intergenic |
| AGACCTGTTGTCGGAAGAAC+AGG | 0.402780 | 4.3:+87662237 | None:intergenic |
| TGGGGAAGAAGAGCTATTAT+GGG | 0.403677 | 4.3:-87661883 | MS.gene65436:CDS |
| CCAGAGTTCCTTCGGTGGTT+GGG | 0.404523 | 4.3:-87660125 | MS.gene65436:CDS |
| AATAACCATAACATGGCCTT+TGG | 0.408099 | 4.3:+87662036 | None:intergenic |
| GGAGATAACTCTTCTTTGGT+TGG | 0.409039 | 4.3:+87660146 | None:intergenic |
| AGAGAATCACAACCACAATA+AGG | 0.409233 | 4.3:+87661944 | None:intergenic |
| CGCGTCATGCGGCTGGAAGA+AGG | 0.413812 | 4.3:-87660077 | MS.gene65436:CDS |
| TACTCAACATAATGTTAAAC+CGG | 0.414465 | 4.3:+87659775 | None:intergenic |
| ATGTCTATTGGTGGCGCGGC+CGG | 0.417223 | 4.3:-87662387 | MS.gene65436:CDS |
| AGAAAATCTGGACCAATAAC+AGG | 0.418603 | 4.3:-87662510 | MS.gene65436:CDS |
| GCAACGGCCATGCCATATAC+TGG | 0.418874 | 4.3:-87662600 | MS.gene65436:CDS |
| ATAGCCCGAGCAGCAGCATT+AGG | 0.424098 | 4.3:+87662429 | None:intergenic |
| TTTAACGGGCCGGATGTTAT+GGG | 0.428882 | 4.3:+87662201 | None:intergenic |
| GCAGTTCTAAGCTCGGAGTC+TGG | 0.438914 | 4.3:+87661844 | None:intergenic |
| ATCTTAAGACTATACCTTCA+AGG | 0.438994 | 4.3:+87659827 | None:intergenic |
| TGACGACCGCGTCATGCGGC+TGG | 0.439958 | 4.3:-87660084 | MS.gene65436:CDS |
| GCAGCAGCATTAGGATGAAT+TGG | 0.442526 | 4.3:+87662438 | None:intergenic |
| GAACCGAGTCATCGACATAA+GGG | 0.443736 | 4.3:+87660183 | None:intergenic |
| ATTGTCGGAACCCTTTCCTT+CGG | 0.445815 | 4.3:+87662627 | None:intergenic |
| AAGTCTTCTGGTCCTCAGTC+TGG | 0.446644 | 4.3:-87662303 | MS.gene65436:CDS |
| TCATCCTAATGCTGCTGCTC+GGG | 0.448028 | 4.3:-87662433 | MS.gene65436:CDS |
| CAACCTGTTGTAATTGGCTC+TGG | 0.449007 | 4.3:+87659880 | None:intergenic |
| CCCAACCACCGAAGGAACTC+TGG | 0.451038 | 4.3:+87660125 | None:intergenic |
| GCTCCTGTTCTTCCGACAAC+AGG | 0.451493 | 4.3:-87662240 | MS.gene65436:CDS |
| TCCAGAGTTCCTTCGGTGGT+TGG | 0.451936 | 4.3:-87660126 | MS.gene65436:CDS |
| CCAGTCTGGTTTAAGGGCAT+TGG | 0.452634 | 4.3:-87660234 | MS.gene65436:CDS |
| TCTGGTGGAGTAACTCCAAC+TGG | 0.452783 | 4.3:-87662285 | MS.gene65436:CDS |
| TTCATCCTAATGCTGCTGCT+CGG | 0.459175 | 4.3:-87662434 | MS.gene65436:CDS |
| GACAATTTGTGAAAGTCTCT+GGG | 0.466857 | 4.3:-87661813 | MS.gene65436:CDS |
| AGTTATCTCCAGAGTTCCTT+CGG | 0.477647 | 4.3:-87660133 | MS.gene65436:CDS |
| AAAGGACCGGACACTTTCCT+AGG | 0.477866 | 4.3:+87662165 | None:intergenic |
| ACAACAGGTCTCATTACATC+GGG | 0.478936 | 4.3:-87662225 | MS.gene65436:CDS |
| AAATTCAGGTATGTTAAAGA+AGG | 0.480328 | 4.3:-87659967 | MS.gene65436:intron |
| CCTGTTGTAATTGGCTCTGG+TGG | 0.480509 | 4.3:+87659883 | None:intergenic |
| AGGAAGCACGGTGAGTGTAA+TGG | 0.482841 | 4.3:-87659947 | MS.gene65436:CDS |
| GAGCACCAGAAGAGTTTAAC+GGG | 0.484627 | 4.3:+87662187 | None:intergenic |
| AATTGGTCCGGAATGTGAAC+CGG | 0.485882 | 4.3:+87662455 | None:intergenic |
| CTGGCCGCCCTGATACATAT+AGG | 0.492316 | 4.3:+87662655 | None:intergenic |
| ACTATACCTTCAAGGCTAGC+AGG | 0.493773 | 4.3:+87659835 | None:intergenic |
| AGAACCGAGTCATCGACATA+AGG | 0.496748 | 4.3:+87660182 | None:intergenic |
| TAGTTGCTGCGTCTTTCACT+TGG | 0.499653 | 4.3:-87661915 | MS.gene65436:CDS |
| ATGTTTGATATTCCTACTGA+TGG | 0.501815 | 4.3:-87662543 | MS.gene65436:CDS |
| TCCGGTCCTTTGGAAGCGAC+AGG | 0.503063 | 4.3:-87662153 | MS.gene65436:CDS |
| AGAACCGTGACAGCTTGATT+GGG | 0.504116 | 4.3:+87662096 | None:intergenic |
| CCACCAGAGCCAATTACAAC+AGG | 0.509786 | 4.3:-87659883 | MS.gene65436:CDS |
| ACATCGGGGCCCATAACATC+CGG | 0.514434 | 4.3:-87662210 | MS.gene65436:CDS |
| TAAACTCTTCTGGTGCTCCT+AGG | 0.515059 | 4.3:-87662182 | MS.gene65436:CDS |
| GGCCAGAGCAGCCGAAGGAA+AGG | 0.516639 | 4.3:-87662638 | MS.gene65436:CDS |
| CAATCCTACTCTCCTTATTG+TGG | 0.520480 | 4.3:-87661956 | MS.gene65436:CDS |
| CCAAGAAAGTCGCCGATGTG+TGG | 0.521299 | 4.3:+87660450 | None:intergenic |
| TCAGGTTCCATGTCTATTGG+TGG | 0.521553 | 4.3:-87662396 | MS.gene65436:CDS |
| GCTGTCACGGTTCTCAATCA+AGG | 0.524641 | 4.3:-87662087 | MS.gene65436:CDS |
| GGAGCACCAGAAGAGTTTAA+CGG | 0.526982 | 4.3:+87662186 | None:intergenic |
| GATGTAATGAGACCTGTTGT+CGG | 0.530788 | 4.3:+87662228 | None:intergenic |
| TTAAGGGCATTGGTCAAGAC+TGG | 0.533377 | 4.3:-87660224 | MS.gene65436:CDS |
| TCCGGGCCGTTGAGTAAGCA+TGG | 0.533729 | 4.3:-87662339 | MS.gene65436:CDS |
| AGCATTAGGATGAATTGGTC+CGG | 0.534541 | 4.3:+87662443 | None:intergenic |
| GCCAGAGCAGCCGAAGGAAA+GGG | 0.535600 | 4.3:-87662637 | MS.gene65436:CDS |
| GCATTGGTCAAGACTGGTCA+TGG | 0.535819 | 4.3:-87660218 | MS.gene65436:CDS |
| ATGGCCGTTGCAGTCATTGT+CGG | 0.539664 | 4.3:+87662612 | None:intergenic |
| ACCTGTCGCTTCCAAAGGAC+CGG | 0.542637 | 4.3:+87662152 | None:intergenic |
| GTTGTAATTGGCTCTGGTGG+AGG | 0.543129 | 4.3:+87659886 | None:intergenic |
| ATCGAACCTGTCGCTTCCAA+AGG | 0.546674 | 4.3:+87662147 | None:intergenic |
| ACCAGAAGAGTTTAACGGGC+CGG | 0.548740 | 4.3:+87662191 | None:intergenic |
| ACACATCGGCGACTTTCTTG+GGG | 0.550057 | 4.3:-87660448 | MS.gene65436:CDS |
| CAAGTGACGACCGCGTCATG+CGG | 0.550405 | 4.3:-87660088 | MS.gene65436:CDS |
| GTTGATGTATATACGCATCT+GGG | 0.554560 | 4.3:+87660517 | None:intergenic |
| CCAATGCCCTTAAACCAGAC+TGG | 0.554916 | 4.3:+87660234 | None:intergenic |
| CAATTACAACAGGTTGCCAC+TGG | 0.559535 | 4.3:-87659873 | MS.gene65436:CDS |
| TCTTCTGGTCCTCAGTCTGG+TGG | 0.564069 | 4.3:-87662300 | MS.gene65436:CDS |
| CAAGAAAGTCGCCGATGTGT+GGG | 0.564808 | 4.3:+87660451 | None:intergenic |
| GCGTCATGCGGCTGGAAGAA+GGG | 0.567626 | 4.3:-87660076 | MS.gene65436:intron |
| CCGGGCCGTTGAGTAAGCAT+GGG | 0.569197 | 4.3:-87662338 | MS.gene65436:CDS |
| TTCTCTCTCCCAACCACCGA+AGG | 0.571271 | 4.3:+87660117 | None:intergenic |
| CCCATGCTTACTCAACGGCC+CGG | 0.573033 | 4.3:+87662338 | None:intergenic |
| TTCACTTGGAATACTTATTG+GGG | 0.584812 | 4.3:-87661901 | MS.gene65436:CDS |
| CAGAATTAATAACCATAACA+TGG | 0.587882 | 4.3:+87662029 | None:intergenic |
| CCAGAATGTTGACGTCCAGT+TGG | 0.591032 | 4.3:+87662270 | None:intergenic |
| TGTTCCCAATCAAGCTGTCA+CGG | 0.592305 | 4.3:-87662100 | MS.gene65436:CDS |
| GGCCGCGCCACCAATAGACA+TGG | 0.592797 | 4.3:+87662389 | None:intergenic |
| CCAAAAGATGTTGTTCGTGA+TGG | 0.593399 | 4.3:+87662483 | None:intergenic |
| GGTGCTCCTAGGAAAGTGTC+CGG | 0.594458 | 4.3:-87662171 | MS.gene65436:CDS |
| CCATTGCTAAGCTGATGAGA+TGG | 0.595252 | 4.3:+87662678 | None:intergenic |
| GTCCAAGAATGATGTCATAC+CGG | 0.596211 | 4.3:-87659794 | MS.gene65436:CDS |
| GTTTATATGAGTATCGAGGA+TGG | 0.596932 | 4.3:-87660492 | MS.gene65436:CDS |
| ACAACCACAATAAGGAGAGT+AGG | 0.597391 | 4.3:+87661952 | None:intergenic |
| TTCCATGTCTATTGGTGGCG+CGG | 0.597736 | 4.3:-87662391 | MS.gene65436:CDS |
| GTCATGGGTTTCATTGCTGG+CGG | 0.598110 | 4.3:-87662000 | MS.gene65436:CDS |
| GTCTCCACCAGTATATGGCA+TGG | 0.603884 | 4.3:+87662593 | None:intergenic |
| AACCCCTTATGTCGATGACT+CGG | 0.606820 | 4.3:-87660186 | MS.gene65436:CDS |
| GACAACAGGTCTCATTACAT+CGG | 0.606983 | 4.3:-87662226 | MS.gene65436:CDS |
| TTTATATGAGTATCGAGGAT+GGG | 0.609039 | 4.3:-87660491 | MS.gene65436:CDS |
| CTTCTTCCAGCCGCATGACG+CGG | 0.611684 | 4.3:+87660078 | None:intergenic |
| ATACTGTAGGTCGTTACTTG+CGG | 0.613603 | 4.3:-87660574 | MS.gene65436:intron |
| CCATCTCATCAGCTTAGCAA+TGG | 0.621180 | 4.3:-87662678 | MS.gene65436:CDS |
| AGGGCGGCCAGAGCAGCCGA+AGG | 0.624884 | 4.3:-87662643 | MS.gene65436:CDS |
| GCAATGGCCTATATGTATCA+GGG | 0.626956 | 4.3:-87662662 | MS.gene65436:CDS |
| TATCTCCAGAGTTCCTTCGG+TGG | 0.629619 | 4.3:-87660130 | MS.gene65436:CDS |
| ACAGGTTCGATGAAGCTGCA+AGG | 0.638065 | 4.3:-87662135 | MS.gene65436:CDS |
| GAAGCACGGTGAGTGTAATG+GGG | 0.642631 | 4.3:-87659945 | MS.gene65436:CDS |
| GTCGGAAGAACAGGAGCTTG+AGG | 0.645472 | 4.3:+87662246 | None:intergenic |
| ACGGCCATGCCATATACTGG+TGG | 0.650794 | 4.3:-87662597 | MS.gene65436:CDS |
| AACCGAGTCATCGACATAAG+GGG | 0.653406 | 4.3:+87660184 | None:intergenic |
| AAGGAGAGTAGGATTGTGCA+CGG | 0.656895 | 4.3:+87661963 | None:intergenic |
| GGTTCCCCATGCTTACTCAA+CGG | 0.659541 | 4.3:+87662333 | None:intergenic |
| GGTTCCGACAATGACTGCAA+CGG | 0.666643 | 4.3:-87662616 | MS.gene65436:CDS |
| GTATGTTAAAGAAGGAAGCA+CGG | 0.670526 | 4.3:-87659959 | MS.gene65436:CDS |
| ACAAGTTTATATGAGTATCG+AGG | 0.671590 | 4.3:-87660496 | MS.gene65436:CDS |
| AGGTATAGTCTTAAGATGCG+AGG | 0.673800 | 4.3:-87659821 | MS.gene65436:CDS |
| TTCTGGAAAGATGACTCTAG+AGG | 0.681620 | 4.3:+87660544 | None:intergenic |
| AAGCTGCAAATCCCACACAT+CGG | 0.686120 | 4.3:-87660462 | MS.gene65436:CDS |
| TTGATGTATATACGCATCTG+GGG | 0.691928 | 4.3:+87660518 | None:intergenic |
| AAGCACGGTGAGTGTAATGG+GGG | 0.692901 | 4.3:-87659944 | MS.gene65436:CDS |
| CGGGCCGTTGAGTAAGCATG+GGG | 0.703124 | 4.3:-87662337 | MS.gene65436:CDS |
| GGAGTTACTCCACCAGACTG+AGG | 0.706915 | 4.3:+87662291 | None:intergenic |
| ACAATTTGTGAAAGTCTCTG+GGG | 0.715397 | 4.3:-87661812 | MS.gene65436:intron |
| TGTCATGTGACAGAGGCGTG+TGG | 0.723365 | 4.3:-87660279 | MS.gene65436:intron |
| CAACAGGTCTCATTACATCG+GGG | 0.785514 | 4.3:-87662224 | MS.gene65436:CDS |
| ATGGCCTATATGTATCAGGG+CGG | 0.795476 | 4.3:-87662659 | MS.gene65436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCTTTATGACAAAAT+CGG | + | chr4.3:87661713-87661732 | None:intergenic | 15.0% |
| !! | GATAAACTATACTTTACAAT+TGG | - | chr4.3:87660903-87660922 | MS.gene65436:intron | 20.0% |
| !! | TAATTCTTTAATACTGTGTT+TGG | - | chr4.3:87661392-87661411 | MS.gene65436:intron | 20.0% |
| !! | TAGATTTAAATGGTCTAATA+GGG | - | chr4.3:87660944-87660963 | MS.gene65436:intron | 20.0% |
| !! | TATAGTTTGATAGAGATAAA+AGG | - | chr4.3:87660873-87660892 | MS.gene65436:intron | 20.0% |
| !! | TTAGATTTAAATGGTCTAAT+AGG | - | chr4.3:87660943-87660962 | MS.gene65436:intron | 20.0% |
| !!! | ATCTATTTTTACAGTTGTAT+CGG | - | chr4.3:87662438-87662457 | MS.gene65436:CDS | 20.0% |
| !!! | ATTAGATTTCTTTTGTGAAT+TGG | + | chr4.3:87660123-87660142 | None:intergenic | 20.0% |
| !!! | GAGTAGTTTTTAGATTTAAA+TGG | - | chr4.3:87660934-87660953 | MS.gene65436:intron | 20.0% |
| !!! | TGTAACTTCTTTTTAAATTC+AGG | - | chr4.3:87662501-87662520 | MS.gene65436:CDS | 20.0% |
| ! | AAATTCAGGTATGTTAAAGA+AGG | - | chr4.3:87662515-87662534 | MS.gene65436:CDS | 25.0% |
| ! | ATAAAAAAGTCAGGAGAATT+GGG | - | chr4.3:87659912-87659931 | MS.gene65436:CDS | 25.0% |
| ! | CAATAAATGACAGTAATGTT+TGG | - | chr4.3:87661880-87661899 | MS.gene65436:CDS | 25.0% |
| ! | CAGAATTAATAACCATAACA+TGG | + | chr4.3:87660456-87660475 | None:intergenic | 25.0% |
| ! | TCACAAAAGAAATCTAATTC+CGG | - | chr4.3:87660125-87660144 | MS.gene65436:CDS | 25.0% |
| ! | TTACAAGAGATGATATAACT+TGG | - | chr4.3:87662478-87662497 | MS.gene65436:CDS | 25.0% |
| ! | TTTCACTTGGAATACTTATT+GGG | - | chr4.3:87660580-87660599 | MS.gene65436:intron | 25.0% |
| !! | AAAGAATTAAAAAAGTACGC+AGG | + | chr4.3:87661381-87661400 | None:intergenic | 25.0% |
| !!! | ACTCATGATTTATTTTGATC+AGG | - | chr4.3:87661759-87661778 | MS.gene65436:intron | 25.0% |
| !!! | ATTAATTCTGCTTTTTGTCA+TGG | - | chr4.3:87660466-87660485 | MS.gene65436:CDS | 25.0% |
| !!! | CCTTTTTCATTAAATTGGAT+CGG | + | chr4.3:87661026-87661045 | None:intergenic | 25.0% |
| !!! | CTCATGATTTATTTTGATCA+GGG | - | chr4.3:87661760-87661779 | MS.gene65436:intron | 25.0% |
| !!! | TTAATTCTGCTTTTTGTCAT+GGG | - | chr4.3:87660467-87660486 | MS.gene65436:CDS | 25.0% |
| !!! | TTCTAAGGCAAATATTACTT+GGG | + | chr4.3:87661790-87661809 | None:intergenic | 25.0% |
| AAACATAACTGGATGTTCTA+AGG | + | chr4.3:87661805-87661824 | None:intergenic | 30.0% | |
| ATAAATAGCCTTTACCAGTT+TGG | - | chr4.3:87660770-87660789 | MS.gene65436:intron | 30.0% | |
| ATATCATTACATATCGCATG+TGG | + | chr4.3:87661323-87661342 | None:intergenic | 30.0% | |
| ATCTTAAGACTATACCTTCA+AGG | + | chr4.3:87662658-87662677 | None:intergenic | 30.0% | |
| ATGTTTGATATTCCTACTGA+TGG | - | chr4.3:87659939-87659958 | MS.gene65436:CDS | 30.0% | |
| CACAAAAGAAATCTAATTCC+GGG | - | chr4.3:87660126-87660145 | MS.gene65436:CDS | 30.0% | |
| CATAAAAAAGTCAGGAGAAT+TGG | - | chr4.3:87659911-87659930 | MS.gene65436:CDS | 30.0% | |
| CCGATCCAATTTAATGAAAA+AGG | - | chr4.3:87661023-87661042 | MS.gene65436:intron | 30.0% | |
| CTTTCACTTGGAATACTTAT+TGG | - | chr4.3:87660579-87660598 | MS.gene65436:intron | 30.0% | |
| GTGATGAATATTCCTTTAGA+AGG | - | chr4.3:87660417-87660436 | MS.gene65436:intron | 30.0% | |
| TATCATTACATATCGCATGT+GGG | + | chr4.3:87661322-87661341 | None:intergenic | 30.0% | |
| TTCACTTGGAATACTTATTG+GGG | - | chr4.3:87660581-87660600 | MS.gene65436:intron | 30.0% | |
| TTCTTTATGACAAAATCGGA+TGG | + | chr4.3:87661709-87661728 | None:intergenic | 30.0% | |
| TTGTCAGTGTTGTCAAATAT+CGG | - | chr4.3:87661495-87661514 | MS.gene65436:intron | 30.0% | |
| ! | AATTAAAAAAGTACGCAGGT+GGG | + | chr4.3:87661377-87661396 | None:intergenic | 30.0% |
| ! | ACAAGTTTATATGAGTATCG+AGG | - | chr4.3:87661986-87662005 | MS.gene65436:CDS | 30.0% |
| ! | CTTTGGAAAATTCCTTCTAA+AGG | + | chr4.3:87660432-87660451 | None:intergenic | 30.0% |
| ! | TTTCTTTTGTGAATTGGAAC+CGG | + | chr4.3:87660117-87660136 | None:intergenic | 30.0% |
| !! | CTACTTTTATAAACTGTGAC+AGG | - | chr4.3:87661261-87661280 | MS.gene65436:intron | 30.0% |
| !! | CTTTAGAAGGAATTTTCCAA+AGG | - | chr4.3:87660430-87660449 | MS.gene65436:intron | 30.0% |
| !! | GATACTTAATGAGAGCATTT+AGG | - | chr4.3:87661200-87661219 | MS.gene65436:intron | 30.0% |
| !! | GTTCTAAGGCAAATATTACT+TGG | + | chr4.3:87661791-87661810 | None:intergenic | 30.0% |
| !! | TTTATATGAGTATCGAGGAT+GGG | - | chr4.3:87661991-87662010 | MS.gene65436:CDS | 30.0% |
| !!! | ATTTTTTGCAGTTCTAAGCT+CGG | + | chr4.3:87660648-87660667 | None:intergenic | 30.0% |
| AACAGCCAAGACCAAATTAA+AGG | + | chr4.3:87661146-87661165 | None:intergenic | 35.0% | |
| AATAACCATAACATGGCCTT+TGG | + | chr4.3:87660449-87660468 | None:intergenic | 35.0% | |
| ACAATTTGTGAAAGTCTCTG+GGG | - | chr4.3:87660670-87660689 | MS.gene65436:intron | 35.0% | |
| AGAAAATCTGGACCAATAAC+AGG | - | chr4.3:87659972-87659991 | MS.gene65436:intron | 35.0% | |
| AGAGAATCACAACCACAATA+AGG | + | chr4.3:87660541-87660560 | None:intergenic | 35.0% | |
| AGGATAGTTTGATAGAGGTA+AGG | - | chr4.3:87660834-87660853 | MS.gene65436:intron | 35.0% | |
| ATAACATTCAGTGTTGTCGA+TGG | + | chr4.3:87661650-87661669 | None:intergenic | 35.0% | |
| ATTGTGGTTGTGATTCTCTT+TGG | - | chr4.3:87660542-87660561 | MS.gene65436:CDS | 35.0% | |
| CAATTTAATGAAAAAGGCCC+TGG | - | chr4.3:87661029-87661048 | MS.gene65436:intron | 35.0% | |
| CTGTCACATGACATATATTC+CGG | + | chr4.3:87662196-87662215 | None:intergenic | 35.0% | |
| GAAAAATACATTTGAGCCAG+TGG | + | chr4.3:87662628-87662647 | None:intergenic | 35.0% | |
| GAACCGATTAAAAAGTCTTC+TGG | - | chr4.3:87660167-87660186 | MS.gene65436:CDS | 35.0% | |
| GAATATATGTCATGTGACAG+AGG | - | chr4.3:87662196-87662215 | MS.gene65436:CDS | 35.0% | |
| GACAATTTGTGAAAGTCTCT+GGG | - | chr4.3:87660669-87660688 | MS.gene65436:intron | 35.0% | |
| GACGAAAATATCATCGTGAA+CGG | - | chr4.3:87661116-87661135 | MS.gene65436:intron | 35.0% | |
| GAGCTTAGAACTGCAAAAAA+TGG | - | chr4.3:87660647-87660666 | MS.gene65436:intron | 35.0% | |
| GGCTCAAAATCTAGAAAATC+TGG | - | chr4.3:87659960-87659979 | MS.gene65436:CDS | 35.0% | |
| GTATCGGATATCAAGTCATA+TGG | - | chr4.3:87662454-87662473 | MS.gene65436:CDS | 35.0% | |
| GTATGTTAAAGAAGGAAGCA+CGG | - | chr4.3:87662523-87662542 | MS.gene65436:CDS | 35.0% | |
| GTTGATGTATATACGCATCT+GGG | + | chr4.3:87661968-87661987 | None:intergenic | 35.0% | |
| TATAAAAGTAGCAACTCCAG+AGG | + | chr4.3:87661252-87661271 | None:intergenic | 35.0% | |
| TCGTCATAATTTCCTATCAC+AGG | + | chr4.3:87660987-87661006 | None:intergenic | 35.0% | |
| TGAACGGAAAGCCTTTAATT+TGG | - | chr4.3:87661132-87661151 | MS.gene65436:intron | 35.0% | |
| TGTTGATGTATATACGCATC+TGG | + | chr4.3:87661969-87661988 | None:intergenic | 35.0% | |
| TTCTGTTTCACTTGATTGAC+CGG | - | chr4.3:87662174-87662193 | MS.gene65436:CDS | 35.0% | |
| TTGATGTATATACGCATCTG+GGG | + | chr4.3:87661967-87661986 | None:intergenic | 35.0% | |
| TTTATGTCTCCACCAGTATA+TGG | + | chr4.3:87659897-87659916 | None:intergenic | 35.0% | |
| ! | AAATATCGGTGGCAGTTTTT+AGG | - | chr4.3:87661509-87661528 | MS.gene65436:intron | 35.0% |
| ! | AGATTTCCAGTCTGGTTTAA+GGG | - | chr4.3:87662242-87662261 | MS.gene65436:CDS | 35.0% |
| ! | ATTTTCCAAAGGCCATGTTA+TGG | - | chr4.3:87660441-87660460 | MS.gene65436:CDS | 35.0% |
| ! | GAATTAAAAAAGTACGCAGG+TGG | + | chr4.3:87661378-87661397 | None:intergenic | 35.0% |
| ! | GGACCAGAAGACTTTTTAAT+CGG | + | chr4.3:87660173-87660192 | None:intergenic | 35.0% |
| !! | CAGGGCCTTTTTCATTAAAT+TGG | + | chr4.3:87661031-87661050 | None:intergenic | 35.0% |
| !! | GAAAGCCTTTAATTTGGTCT+TGG | - | chr4.3:87661138-87661157 | MS.gene65436:intron | 35.0% |
| !! | GTTTATATGAGTATCGAGGA+TGG | - | chr4.3:87661990-87662009 | MS.gene65436:CDS | 35.0% |
| AACCGGTATGACATCATTCT+TGG | + | chr4.3:87662693-87662712 | None:intergenic | 40.0% | |
| AACTCACTTCCAGCAATCTA+AGG | + | chr4.3:87662060-87662079 | None:intergenic | 40.0% | |
| ACAACAGGTCTCATTACATC+GGG | - | chr4.3:87660257-87660276 | MS.gene65436:CDS | 40.0% | |
| ACAACCACAATAAGGAGAGT+AGG | + | chr4.3:87660533-87660552 | None:intergenic | 40.0% | |
| AGCAATGGCCTATATGTATC+AGG | - | chr4.3:87659819-87659838 | MS.gene65436:CDS | 40.0% | |
| AGCATTAGGATGAATTGGTC+CGG | + | chr4.3:87660042-87660061 | None:intergenic | 40.0% | |
| AGCTTCTCGTCAAACATAAC+TGG | + | chr4.3:87661816-87661835 | None:intergenic | 40.0% | |
| AGTTATCTCCAGAGTTCCTT+CGG | - | chr4.3:87662349-87662368 | MS.gene65436:CDS | 40.0% | |
| ATACCCAATTTCGACCGATA+TGG | - | chr4.3:87661541-87661560 | MS.gene65436:intron | 40.0% | |
| ATACTGTAGGTCGTTACTTG+CGG | - | chr4.3:87661908-87661927 | MS.gene65436:CDS | 40.0% | |
| ATATCGGTCGAAATTGGGTA+TGG | + | chr4.3:87661542-87661561 | None:intergenic | 40.0% | |
| ATGTTTGGCTGTGATACTGT+AGG | - | chr4.3:87661895-87661914 | MS.gene65436:CDS | 40.0% | |
| CAATCCTACTCTCCTTATTG+TGG | - | chr4.3:87660526-87660545 | MS.gene65436:CDS | 40.0% | |
| CAGTTTGGAGAAGACACTTA+AGG | - | chr4.3:87660785-87660804 | MS.gene65436:intron | 40.0% | |
| CATTAGACATGACCTGTGAT+AGG | - | chr4.3:87660972-87660991 | MS.gene65436:intron | 40.0% | |
| CCAAAAGATGTTGTTCGTGA+TGG | + | chr4.3:87660002-87660021 | None:intergenic | 40.0% | |
| CTTAAGTGTCTTCTCCAAAC+TGG | + | chr4.3:87660787-87660806 | None:intergenic | 40.0% | |
| GACAACAGGTCTCATTACAT+CGG | - | chr4.3:87660256-87660275 | MS.gene65436:CDS | 40.0% | |
| GAGGAAGGATAGTTTGATAG+AGG | - | chr4.3:87660829-87660848 | MS.gene65436:intron | 40.0% | |
| GATGTAATGAGACCTGTTGT+CGG | + | chr4.3:87660257-87660276 | None:intergenic | 40.0% | |
| GCAATGGCCTATATGTATCA+GGG | - | chr4.3:87659820-87659839 | MS.gene65436:CDS | 40.0% | |
| GGACAATTTGTGAAAGTCTC+TGG | - | chr4.3:87660668-87660687 | MS.gene65436:intron | 40.0% | |
| GGAGATAACTCTTCTTTGGT+TGG | + | chr4.3:87662339-87662358 | None:intergenic | 40.0% | |
| GGTGGAGACATAAAAAAGTC+AGG | - | chr4.3:87659903-87659922 | MS.gene65436:CDS | 40.0% | |
| GTCCAAGAATGATGTCATAC+CGG | - | chr4.3:87662688-87662707 | MS.gene65436:CDS | 40.0% | |
| TACATCTCAGATTTCCAGTC+TGG | - | chr4.3:87662234-87662253 | MS.gene65436:CDS | 40.0% | |
| TCAGTGTTGTCAAATATCGG+TGG | - | chr4.3:87661498-87661517 | MS.gene65436:intron | 40.0% | |
| TCCACCATAATCCGATATGA+CGG | - | chr4.3:87661572-87661591 | MS.gene65436:intron | 40.0% | |
| TGGGGAAGAAGAGCTATTAT+GGG | - | chr4.3:87660599-87660618 | MS.gene65436:intron | 40.0% | |
| TGTCTTCTCCAAACTGGTAA+AGG | + | chr4.3:87660781-87660800 | None:intergenic | 40.0% | |
| TTGGGGAAGAAGAGCTATTA+TGG | - | chr4.3:87660598-87660617 | MS.gene65436:intron | 40.0% | |
| TTTAATGAAAAAGGCCCTGG+CGG | - | chr4.3:87661032-87661051 | MS.gene65436:intron | 40.0% | |
| TTTGTCATGGGTTTCATTGC+TGG | - | chr4.3:87660479-87660498 | MS.gene65436:CDS | 40.0% | |
| ! | ACACTTAAGGCATCAATGCT+AGG | - | chr4.3:87660798-87660817 | MS.gene65436:intron | 40.0% |
| ! | ACTTCAGGTTCCATGTCTAT+TGG | - | chr4.3:87660083-87660102 | MS.gene65436:CDS | 40.0% |
| ! | AGGTATAGTCTTAAGATGCG+AGG | - | chr4.3:87662661-87662680 | MS.gene65436:CDS | 40.0% |
| ! | CACTTAAGGCATCAATGCTA+GGG | - | chr4.3:87660799-87660818 | MS.gene65436:intron | 40.0% |
| ! | CAGATTTCCAGTCTGGTTTA+AGG | - | chr4.3:87662241-87662260 | MS.gene65436:CDS | 40.0% |
| ! | CCATCACGAACAACATCTTT+TGG | - | chr4.3:87659999-87660018 | MS.gene65436:intron | 40.0% |
| ! | CTAGATTTTGAGCCATCAGT+AGG | + | chr4.3:87659954-87659973 | None:intergenic | 40.0% |
| ! | CTCTGGAGATAACTCTTCTT+TGG | + | chr4.3:87662343-87662362 | None:intergenic | 40.0% |
| ! | TCACGAACAACATCTTTTGG+AGG | - | chr4.3:87660002-87660021 | MS.gene65436:intron | 40.0% |
| ! | TTCTGGAAAGATGACTCTAG+AGG | + | chr4.3:87661941-87661960 | None:intergenic | 40.0% |
| !!! | ATTGCTGGCGGTTTTATTCT+TGG | - | chr4.3:87660494-87660513 | MS.gene65436:CDS | 40.0% |
| !!! | ATTTTTCCTGCTAGCCTTGA+AGG | - | chr4.3:87662641-87662660 | MS.gene65436:CDS | 40.0% |
| AAACTATAATAGCCACCGCC+AGG | + | chr4.3:87661050-87661069 | None:intergenic | 45.0% | |
| AACCCCTTATGTCGATGACT+CGG | - | chr4.3:87662296-87662315 | MS.gene65436:CDS | 45.0% | |
| AACCGAGTCATCGACATAAG+GGG | + | chr4.3:87662301-87662320 | None:intergenic | 45.0% | |
| AACTATAATAGCCACCGCCA+GGG | + | chr4.3:87661049-87661068 | None:intergenic | 45.0% | |
| AAGCTCGGAGTCTGGATAAT+TGG | + | chr4.3:87660633-87660652 | None:intergenic | 45.0% | |
| AAGCTGCAAATCCCACACAT+CGG | - | chr4.3:87662020-87662039 | MS.gene65436:CDS | 45.0% | |
| AAGGAGAGTAGGATTGTGCA+CGG | + | chr4.3:87660522-87660541 | None:intergenic | 45.0% | |
| AATTGGTCCGGAATGTGAAC+CGG | + | chr4.3:87660030-87660049 | None:intergenic | 45.0% | |
| ACAGGTATCAGACACGTACT+TGG | - | chr4.3:87661279-87661298 | MS.gene65436:intron | 45.0% | |
| ACATTCAGTGTTGTCGATGG+CGG | + | chr4.3:87661647-87661666 | None:intergenic | 45.0% | |
| ACTATACCTTCAAGGCTAGC+AGG | + | chr4.3:87662650-87662669 | None:intergenic | 45.0% | |
| AGAACCGAGTCATCGACATA+AGG | + | chr4.3:87662303-87662322 | None:intergenic | 45.0% | |
| AGAACCGTGACAGCTTGATT+GGG | + | chr4.3:87660389-87660408 | None:intergenic | 45.0% | |
| AGAGGTTTAGTGCGCAAACA+AGG | + | chr4.3:87661234-87661253 | None:intergenic | 45.0% | |
| ATGGCCTATATGTATCAGGG+CGG | - | chr4.3:87659823-87659842 | MS.gene65436:CDS | 45.0% | |
| ATTGTCGGAACCCTTTCCTT+CGG | + | chr4.3:87659858-87659877 | None:intergenic | 45.0% | |
| CAACAGGTCTCATTACATCG+GGG | - | chr4.3:87660258-87660277 | MS.gene65436:CDS | 45.0% | |
| CAATTACAACAGGTTGCCAC+TGG | - | chr4.3:87662609-87662628 | MS.gene65436:CDS | 45.0% | |
| CAGTGGCAACCTGTTGTAAT+TGG | + | chr4.3:87662611-87662630 | None:intergenic | 45.0% | |
| CCATCTCATCAGCTTAGCAA+TGG | - | chr4.3:87659804-87659823 | MS.gene65436:CDS | 45.0% | |
| CCATTGCTAAGCTGATGAGA+TGG | + | chr4.3:87659807-87659826 | None:intergenic | 45.0% | |
| CGGGCTATGTATACAACTTC+AGG | - | chr4.3:87660068-87660087 | MS.gene65436:intron | 45.0% | |
| CTGCCATATCGGTCGAAATT+GGG | + | chr4.3:87661547-87661566 | None:intergenic | 45.0% | |
| GAACCGAGTCATCGACATAA+GGG | + | chr4.3:87662302-87662321 | None:intergenic | 45.0% | |
| GAGCACCAGAAGAGTTTAAC+GGG | + | chr4.3:87660298-87660317 | None:intergenic | 45.0% | |
| GCAGCAGCATTAGGATGAAT+TGG | + | chr4.3:87660047-87660066 | None:intergenic | 45.0% | |
| GGTGGAAAATCCTGCCATAT+CGG | + | chr4.3:87661558-87661577 | None:intergenic | 45.0% | |
| TAAACTCTTCTGGTGCTCCT+AGG | - | chr4.3:87660300-87660319 | MS.gene65436:intron | 45.0% | |
| TAGTTGCTGCGTCTTTCACT+TGG | - | chr4.3:87660567-87660586 | MS.gene65436:CDS | 45.0% | |
| TCAATGCTAGGGTAGACTAG+AGG | - | chr4.3:87660810-87660829 | MS.gene65436:intron | 45.0% | |
| TCAGGTTCCATGTCTATTGG+TGG | - | chr4.3:87660086-87660105 | MS.gene65436:CDS | 45.0% | |
| TGTTCCCAATCAAGCTGTCA+CGG | - | chr4.3:87660382-87660401 | MS.gene65436:intron | 45.0% | |
| TTCATCCTAATGCTGCTGCT+CGG | - | chr4.3:87660048-87660067 | MS.gene65436:intron | 45.0% | |
| TTGTTTGCGCACTAAACCTC+TGG | - | chr4.3:87661233-87661252 | MS.gene65436:intron | 45.0% | |
| ! | CAACCTGTTGTAATTGGCTC+TGG | + | chr4.3:87662605-87662624 | None:intergenic | 45.0% |
| ! | GGAGCACCAGAAGAGTTTAA+CGG | + | chr4.3:87660299-87660318 | None:intergenic | 45.0% |
| ! | TTTAACGGGCCGGATGTTAT+GGG | + | chr4.3:87660284-87660303 | None:intergenic | 45.0% |
| !! | ACAACATCTTTTGGAGGAGC+CGG | - | chr4.3:87660008-87660027 | MS.gene65436:intron | 45.0% |
| !! | TTAAGGGCATTGGTCAAGAC+TGG | - | chr4.3:87662258-87662277 | MS.gene65436:CDS | 45.0% |
| !! | AAATCTTAAAAATTAAAATT+TGG | - | chr4.3:87661351-87661370 | MS.gene65436:intron | 5.0% |
| AAAGGACCGGACACTTTCCT+AGG | + | chr4.3:87660320-87660339 | None:intergenic | 50.0% | |
| AAGCACGGTGAGTGTAATGG+GGG | - | chr4.3:87662538-87662557 | MS.gene65436:CDS | 50.0% | |
| AAGTCTTCTGGTCCTCAGTC+TGG | - | chr4.3:87660179-87660198 | MS.gene65436:CDS | 50.0% | |
| ACACATCGGCGACTTTCTTG+GGG | - | chr4.3:87662034-87662053 | MS.gene65436:CDS | 50.0% | |
| ACAGGTTCGATGAAGCTGCA+AGG | - | chr4.3:87660347-87660366 | MS.gene65436:intron | 50.0% | |
| AGACCTGTTGTCGGAAGAAC+AGG | + | chr4.3:87660248-87660267 | None:intergenic | 50.0% | |
| ATACGCATCTGGGGACTTTC+TGG | + | chr4.3:87661958-87661977 | None:intergenic | 50.0% | |
| ATGGCCGTTGCAGTCATTGT+CGG | + | chr4.3:87659873-87659892 | None:intergenic | 50.0% | |
| CAAGAAAGTCGCCGATGTGT+GGG | + | chr4.3:87662034-87662053 | None:intergenic | 50.0% | |
| CACACATCGGCGACTTTCTT+GGG | - | chr4.3:87662033-87662052 | MS.gene65436:CDS | 50.0% | |
| CCAACTGGACGTCAACATTC+TGG | - | chr4.3:87660212-87660231 | MS.gene65436:CDS | 50.0% | |
| CCAATGCCCTTAAACCAGAC+TGG | + | chr4.3:87662251-87662270 | None:intergenic | 50.0% | |
| CCAATTTCGACCGATATGGC+AGG | - | chr4.3:87661545-87661564 | MS.gene65436:intron | 50.0% | |
| CCACCAGAGCCAATTACAAC+AGG | - | chr4.3:87662599-87662618 | MS.gene65436:CDS | 50.0% | |
| CCAGAATGTTGACGTCCAGT+TGG | + | chr4.3:87660215-87660234 | None:intergenic | 50.0% | |
| CCTGCCATATCGGTCGAAAT+TGG | + | chr4.3:87661548-87661567 | None:intergenic | 50.0% | |
| CGTGCCGTCATATCGGATTA+TGG | + | chr4.3:87661579-87661598 | None:intergenic | 50.0% | |
| GAAGCACGGTGAGTGTAATG+GGG | - | chr4.3:87662537-87662556 | MS.gene65436:CDS | 50.0% | |
| GACGGCACGTCACAACAAAT+CGG | - | chr4.3:87661590-87661609 | MS.gene65436:intron | 50.0% | |
| GAGAACCGTGACAGCTTGAT+TGG | + | chr4.3:87660390-87660409 | None:intergenic | 50.0% | |
| GAGACAAAATTCCGCCACAC+CGG | + | chr4.3:87661616-87661635 | None:intergenic | 50.0% | |
| GCCGTCATATCGGATTATGG+TGG | + | chr4.3:87661576-87661595 | None:intergenic | 50.0% | |
| GCTGTCACGGTTCTCAATCA+AGG | - | chr4.3:87660395-87660414 | MS.gene65436:intron | 50.0% | |
| GGTTCCCCATGCTTACTCAA+CGG | + | chr4.3:87660152-87660171 | None:intergenic | 50.0% | |
| GGTTCCGACAATGACTGCAA+CGG | - | chr4.3:87659866-87659885 | MS.gene65436:CDS | 50.0% | |
| GTCATGGGTTTCATTGCTGG+CGG | - | chr4.3:87660482-87660501 | MS.gene65436:CDS | 50.0% | |
| GTCTCCACCAGTATATGGCA+TGG | + | chr4.3:87659892-87659911 | None:intergenic | 50.0% | |
| GTTGTGACGTGCCGTCATAT+CGG | + | chr4.3:87661586-87661605 | None:intergenic | 50.0% | |
| TATCTCCAGAGTTCCTTCGG+TGG | - | chr4.3:87662352-87662371 | MS.gene65436:CDS | 50.0% | |
| TCATCCTAATGCTGCTGCTC+GGG | - | chr4.3:87660049-87660068 | MS.gene65436:intron | 50.0% | |
| TCTGGTGGAGTAACTCCAAC+TGG | - | chr4.3:87660197-87660216 | MS.gene65436:CDS | 50.0% | |
| TGCTAGGGTAGACTAGAGGA+AGG | - | chr4.3:87660814-87660833 | MS.gene65436:intron | 50.0% | |
| TTCTTGGGGCCTTAGATTGC+TGG | - | chr4.3:87662048-87662067 | MS.gene65436:CDS | 50.0% | |
| ! | ACCAGAAGAGTTTAACGGGC+CGG | + | chr4.3:87660294-87660313 | None:intergenic | 50.0% |
| ! | AGGAAGCACGGTGAGTGTAA+TGG | - | chr4.3:87662535-87662554 | MS.gene65436:CDS | 50.0% |
| ! | ATCGAACCTGTCGCTTCCAA+AGG | + | chr4.3:87660338-87660357 | None:intergenic | 50.0% |
| ! | CCAGTCTGGTTTAAGGGCAT+TGG | - | chr4.3:87662248-87662267 | MS.gene65436:CDS | 50.0% |
| ! | CGTGATGGTGCACCTGTTAT+TGG | + | chr4.3:87659987-87660006 | None:intergenic | 50.0% |
| ! | GCATTGGTCAAGACTGGTCA+TGG | - | chr4.3:87662264-87662283 | MS.gene65436:CDS | 50.0% |
| ! | GGAAGCACGGTGAGTGTAAT+GGG | - | chr4.3:87662536-87662555 | MS.gene65436:CDS | 50.0% |
| ! | GTGTAATGGGGGTTGTTCAC+AGG | - | chr4.3:87662549-87662568 | MS.gene65436:CDS | 50.0% |
| ! | GTTTAACGGGCCGGATGTTA+TGG | + | chr4.3:87660285-87660304 | None:intergenic | 50.0% |
| !! | CCTGTTGTAATTGGCTCTGG+TGG | + | chr4.3:87662602-87662621 | None:intergenic | 50.0% |
| !! | GTTGTAATTGGCTCTGGTGG+AGG | + | chr4.3:87662599-87662618 | None:intergenic | 50.0% |
| !! | TAGGAAAGTGTCCGGTCCTT+TGG | - | chr4.3:87660319-87660338 | MS.gene65436:intron | 50.0% |
| !! | TTCCATGTCTATTGGTGGCG+CGG | - | chr4.3:87660091-87660110 | MS.gene65436:CDS | 50.0% |
| AATGAAAAAGGCCCTGGCGG+TGG | - | chr4.3:87661035-87661054 | MS.gene65436:intron | 55.0% | |
| ACATCGGGGCCCATAACATC+CGG | - | chr4.3:87660272-87660291 | MS.gene65436:intron | 55.0% | |
| ACGGCCATGCCATATACTGG+TGG | - | chr4.3:87659885-87659904 | MS.gene65436:CDS | 55.0% | |
| ATAGCCCGAGCAGCAGCATT+AGG | + | chr4.3:87660056-87660075 | None:intergenic | 55.0% | |
| CCAAGAAAGTCGCCGATGTG+TGG | + | chr4.3:87662035-87662054 | None:intergenic | 55.0% | |
| CCACACATCGGCGACTTTCT+TGG | - | chr4.3:87662032-87662051 | MS.gene65436:CDS | 55.0% | |
| CCAGAGTTCCTTCGGTGGTT+GGG | - | chr4.3:87662357-87662376 | MS.gene65436:CDS | 55.0% | |
| CTGGCCGCCCTGATACATAT+AGG | + | chr4.3:87659830-87659849 | None:intergenic | 55.0% | |
| GCAACGGCCATGCCATATAC+TGG | - | chr4.3:87659882-87659901 | MS.gene65436:CDS | 55.0% | |
| GCACGTCACAACAAATCGGC+CGG | - | chr4.3:87661594-87661613 | MS.gene65436:intron | 55.0% | |
| GCTCCTGTTCTTCCGACAAC+AGG | - | chr4.3:87660242-87660261 | MS.gene65436:CDS | 55.0% | |
| GGAGTTACTCCACCAGACTG+AGG | + | chr4.3:87660194-87660213 | None:intergenic | 55.0% | |
| GTCGGAAGAACAGGAGCTTG+AGG | + | chr4.3:87660239-87660258 | None:intergenic | 55.0% | |
| TCACAACAAATCGGCCGGTG+TGG | - | chr4.3:87661599-87661618 | MS.gene65436:intron | 55.0% | |
| TCCAGAGTTCCTTCGGTGGT+TGG | - | chr4.3:87662356-87662375 | MS.gene65436:CDS | 55.0% | |
| TCCGGCCCGTTAAACTCTTC+TGG | - | chr4.3:87660290-87660309 | MS.gene65436:intron | 55.0% | |
| TCTTCTGGTCCTCAGTCTGG+TGG | - | chr4.3:87660182-87660201 | MS.gene65436:CDS | 55.0% | |
| TTCTCTCTCCCAACCACCGA+AGG | + | chr4.3:87662368-87662387 | None:intergenic | 55.0% | |
| ! | ACCTGTCGCTTCCAAAGGAC+CGG | + | chr4.3:87660333-87660352 | None:intergenic | 55.0% |
| ! | TGTCATGTGACAGAGGCGTG+TGG | - | chr4.3:87662203-87662222 | MS.gene65436:CDS | 55.0% |
| !! | GCAGTTCTAAGCTCGGAGTC+TGG | + | chr4.3:87660641-87660660 | None:intergenic | 55.0% |
| !! | GGTGCTCCTAGGAAAGTGTC+CGG | - | chr4.3:87660311-87660330 | MS.gene65436:intron | 55.0% |
| !! | TCAGTGTTGTCGATGGCGGA+TGG | + | chr4.3:87661643-87661662 | None:intergenic | 55.0% |
| ACCCTTTCCTTCGGCTGCTC+TGG | + | chr4.3:87659849-87659868 | None:intergenic | 60.0% | |
| CAACAAATCGGCCGGTGTGG+CGG | - | chr4.3:87661602-87661621 | MS.gene65436:intron | 60.0% | |
| CAAGTGACGACCGCGTCATG+CGG | - | chr4.3:87662394-87662413 | MS.gene65436:CDS | 60.0% | |
| CCCAACCACCGAAGGAACTC+TGG | + | chr4.3:87662360-87662379 | None:intergenic | 60.0% | |
| CCCATGCTTACTCAACGGCC+CGG | + | chr4.3:87660147-87660166 | None:intergenic | 60.0% | |
| CCGGGCCGTTGAGTAAGCAT+GGG | - | chr4.3:87660144-87660163 | MS.gene65436:CDS | 60.0% | |
| CGGGCCGTTGAGTAAGCATG+GGG | - | chr4.3:87660145-87660164 | MS.gene65436:CDS | 60.0% | |
| CTTCTTCCAGCCGCATGACG+CGG | + | chr4.3:87662407-87662426 | None:intergenic | 60.0% | |
| GCCAGAGCAGCCGAAGGAAA+GGG | - | chr4.3:87659845-87659864 | MS.gene65436:CDS | 60.0% | |
| GCGTCATGCGGCTGGAAGAA+GGG | - | chr4.3:87662406-87662425 | MS.gene65436:CDS | 60.0% | |
| TCCGGGCCGTTGAGTAAGCA+TGG | - | chr4.3:87660143-87660162 | MS.gene65436:CDS | 60.0% | |
| ! | GGAGGAGCCGGTTCACATTC+CGG | - | chr4.3:87660020-87660039 | MS.gene65436:intron | 60.0% |
| ! | TCCGGTCCTTTGGAAGCGAC+AGG | - | chr4.3:87660329-87660348 | MS.gene65436:intron | 60.0% |
| !! | ATGTCTATTGGTGGCGCGGC+CGG | - | chr4.3:87660095-87660114 | MS.gene65436:CDS | 60.0% |
| CGCGTCATGCGGCTGGAAGA+AGG | - | chr4.3:87662405-87662424 | MS.gene65436:CDS | 65.0% | |
| GGCCAGAGCAGCCGAAGGAA+AGG | - | chr4.3:87659844-87659863 | MS.gene65436:CDS | 65.0% | |
| GGCCGCGCCACCAATAGACA+TGG | + | chr4.3:87660096-87660115 | None:intergenic | 65.0% | |
| TGACGACCGCGTCATGCGGC+TGG | - | chr4.3:87662398-87662417 | MS.gene65436:CDS | 70.0% | |
| AGGGCGGCCAGAGCAGCCGA+AGG | - | chr4.3:87659839-87659858 | MS.gene65436:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 87659789 | 87662715 | 87659789 | ID=MS.gene65436 |
| chr4.3 | mRNA | 87659789 | 87662715 | 87659789 | ID=MS.gene65436.t1;Parent=MS.gene65436 |
| chr4.3 | exon | 87661813 | 87662715 | 87661813 | ID=MS.gene65436.t1.exon1;Parent=MS.gene65436.t1 |
| chr4.3 | CDS | 87661813 | 87662715 | 87661813 | ID=cds.MS.gene65436.t1;Parent=MS.gene65436.t1 |
| chr4.3 | exon | 87660432 | 87660587 | 87660432 | ID=MS.gene65436.t1.exon2;Parent=MS.gene65436.t1 |
| chr4.3 | CDS | 87660432 | 87660587 | 87660432 | ID=cds.MS.gene65436.t1;Parent=MS.gene65436.t1 |
| chr4.3 | exon | 87660077 | 87660288 | 87660077 | ID=MS.gene65436.t1.exon3;Parent=MS.gene65436.t1 |
| chr4.3 | CDS | 87660077 | 87660288 | 87660077 | ID=cds.MS.gene65436.t1;Parent=MS.gene65436.t1 |
| chr4.3 | exon | 87659789 | 87659981 | 87659789 | ID=MS.gene65436.t1.exon4;Parent=MS.gene65436.t1 |
| chr4.3 | CDS | 87659789 | 87659981 | 87659789 | ID=cds.MS.gene65436.t1;Parent=MS.gene65436.t1 |
| Gene Sequence |
| Protein sequence |
