Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65496.t1 | XP_003590037.1 | 98.5 | 533 | 8 | 0 | 1 | 533 | 1 | 533 | 3.40E-301 | 1043.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65496.t1 | O48639 | 81.2 | 516 | 95 | 2 | 4 | 519 | 5 | 518 | 1.3e-240 | 833.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65496.t1 | A5H2U5 | 98.5 | 533 | 8 | 0 | 1 | 533 | 1 | 533 | 2.4e-301 | 1043.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053402 | MS.gene65496 | 0.815482 | 9.04E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene65496 | -0.805153 | 1.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65496.t1 | MTR_1g043200 | 98.499 | 533 | 8 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1080 |
| MS.gene65496.t1 | MTR_1g043220 | 97.547 | 530 | 13 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1065 |
| MS.gene65496.t1 | MTR_1g043290 | 96.998 | 533 | 16 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1064 |
| MS.gene65496.t1 | MTR_1g074930 | 84.820 | 527 | 80 | 0 | 1 | 527 | 1 | 527 | 0.0 | 944 |
| MS.gene65496.t1 | MTR_3g082700 | 78.346 | 508 | 109 | 1 | 4 | 511 | 5 | 511 | 0.0 | 840 |
| MS.gene65496.t1 | MTR_1g069935 | 75.573 | 524 | 124 | 2 | 4 | 527 | 5 | 524 | 0.0 | 824 |
| MS.gene65496.t1 | MTR_7g096870 | 76.834 | 518 | 116 | 2 | 4 | 521 | 5 | 518 | 0.0 | 813 |
| MS.gene65496.t1 | MTR_7g096880 | 77.165 | 508 | 110 | 2 | 4 | 511 | 5 | 506 | 0.0 | 800 |
| MS.gene65496.t1 | MTR_1g074940 | 75.930 | 511 | 105 | 4 | 4 | 511 | 5 | 500 | 0.0 | 792 |
| MS.gene65496.t1 | MTR_1g069930 | 68.288 | 514 | 160 | 2 | 4 | 517 | 5 | 515 | 0.0 | 741 |
| MS.gene65496.t1 | MTR_1g028600 | 62.548 | 518 | 180 | 4 | 5 | 522 | 3 | 506 | 0.0 | 644 |
| MS.gene65496.t1 | MTR_5g068140 | 57.299 | 548 | 208 | 5 | 1 | 532 | 1 | 538 | 0.0 | 612 |
| MS.gene65496.t1 | MTR_4g083960 | 53.962 | 530 | 222 | 10 | 1 | 524 | 1 | 514 | 0.0 | 535 |
| MS.gene65496.t1 | MTR_3g084110 | 24.512 | 461 | 278 | 18 | 68 | 515 | 69 | 472 | 1.35e-16 | 82.8 |
| MS.gene65496.t1 | MTR_7g005910 | 23.077 | 442 | 271 | 18 | 86 | 515 | 92 | 476 | 1.28e-14 | 76.6 |
| MS.gene65496.t1 | MTR_1g116660 | 21.364 | 440 | 274 | 15 | 89 | 514 | 97 | 478 | 4.74e-12 | 68.6 |
| MS.gene65496.t1 | MTR_7g446340 | 23.297 | 455 | 286 | 16 | 75 | 519 | 104 | 505 | 9.90e-11 | 64.7 |
| MS.gene65496.t1 | MTR_6g007340 | 23.297 | 455 | 286 | 16 | 75 | 519 | 104 | 505 | 9.90e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65496.t1 | AT5G43360 | 81.202 | 516 | 95 | 2 | 4 | 519 | 5 | 518 | 0.0 | 859 |
| MS.gene65496.t1 | AT3G54700 | 80.426 | 516 | 96 | 2 | 4 | 519 | 5 | 515 | 0.0 | 854 |
| MS.gene65496.t1 | AT3G54700 | 80.426 | 516 | 96 | 2 | 4 | 519 | 5 | 515 | 0.0 | 854 |
| MS.gene65496.t1 | AT5G43350 | 80.039 | 516 | 101 | 2 | 4 | 519 | 5 | 518 | 0.0 | 852 |
| MS.gene65496.t1 | AT2G38940 | 77.778 | 513 | 113 | 1 | 4 | 516 | 5 | 516 | 0.0 | 838 |
| MS.gene65496.t1 | AT2G32830 | 76.789 | 517 | 118 | 2 | 7 | 522 | 8 | 523 | 0.0 | 831 |
| MS.gene65496.t1 | AT5G43370 | 79.845 | 516 | 102 | 2 | 4 | 519 | 5 | 518 | 0.0 | 820 |
| MS.gene65496.t1 | AT5G43370 | 79.845 | 516 | 102 | 2 | 4 | 519 | 5 | 518 | 0.0 | 820 |
| MS.gene65496.t1 | AT5G43340 | 65.577 | 520 | 160 | 4 | 7 | 524 | 9 | 511 | 0.0 | 709 |
| MS.gene65496.t1 | AT1G76430 | 49.343 | 533 | 243 | 12 | 4 | 526 | 3 | 518 | 9.76e-172 | 496 |
| MS.gene65496.t1 | AT1G20860 | 49.905 | 529 | 247 | 9 | 5 | 527 | 3 | 519 | 3.96e-169 | 489 |
| MS.gene65496.t1 | AT1G20860 | 49.905 | 529 | 247 | 9 | 5 | 527 | 55 | 571 | 1.14e-168 | 490 |
| MS.gene65496.t1 | AT4G08878 | 64.368 | 261 | 90 | 2 | 30 | 290 | 13 | 270 | 8.17e-114 | 339 |
| MS.gene65496.t1 | AT4G08895 | 55.714 | 140 | 30 | 1 | 321 | 460 | 23 | 130 | 8.12e-47 | 160 |
| MS.gene65496.t1 | AT2G43330 | 22.198 | 455 | 295 | 15 | 68 | 514 | 72 | 475 | 2.01e-11 | 67.0 |
Find 112 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCTTCTTTGCTAATTT+TGG | 0.173620 | 1.3:-25855359 | MS.gene65496:CDS |
| CACTTTGTTTCTTTAGGTTT+TGG | 0.183884 | 1.3:-25856213 | MS.gene65496:CDS |
| GCAGTACTGTTCCTGGTTAC+TGG | 0.198938 | 1.3:-25855535 | MS.gene65496:CDS |
| GTTGCTTCAGGACTCTCTTT+TGG | 0.216739 | 1.3:-25856262 | MS.gene65496:CDS |
| GCCGTGTAACGAGCTGTTTC+TGG | 0.242717 | 1.3:+25855887 | None:intergenic |
| AATTATTCTTTGGTTGGCTT+GGG | 0.264750 | 1.3:-25856345 | MS.gene65496:CDS |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 1.3:-25856335 | MS.gene65496:CDS |
| TATATTTGATCACAAATATA+AGG | 0.273690 | 1.3:-25856035 | MS.gene65496:CDS |
| CGACATGGTTGGGCTTTGTT+TGG | 0.280959 | 1.3:-25855719 | MS.gene65496:CDS |
| TGGCAACACTTTGTTTCTTT+AGG | 0.286390 | 1.3:-25856219 | MS.gene65496:CDS |
| GGAGCAATTGTTGGTGCATT+TGG | 0.287811 | 1.3:-25855242 | MS.gene65496:CDS |
| GATCCTACCAAGACCGATAA+AGG | 0.287833 | 1.3:-25855194 | MS.gene65496:CDS |
| TGCCTCAATTTGATTATGTT+TGG | 0.291088 | 1.3:-25855973 | MS.gene65496:CDS |
| CTAGCAGGCCAATTATTCTT+TGG | 0.295996 | 1.3:-25856355 | MS.gene65496:CDS |
| CAAGCCAACCAAAGAATAAT+TGG | 0.296172 | 1.3:+25856347 | None:intergenic |
| ACACTTGGTGGAAGTGTTCC+TGG | 0.300768 | 1.3:+25856415 | None:intergenic |
| AGTAAGAAAGATAACAGAAT+TGG | 0.306707 | 1.3:-25855404 | MS.gene65496:CDS |
| TCAGTCATGTCTGGAGAATT+AGG | 0.311053 | 1.3:-25856601 | None:intergenic |
| CAATTATTCTTTGGTTGGCT+TGG | 0.312479 | 1.3:-25856346 | MS.gene65496:CDS |
| TCCCTTGTCACAAAGTTGTT+AGG | 0.314005 | 1.3:-25856472 | MS.gene65496:CDS |
| AGTGTTGCCATAACACTCTT+TGG | 0.315160 | 1.3:+25856232 | None:intergenic |
| GTGGTATGTTCTGTTGCTTC+AGG | 0.329797 | 1.3:-25856274 | MS.gene65496:CDS |
| ACAACAAATGTTGTAGCATT+TGG | 0.334728 | 1.3:+25855335 | None:intergenic |
| GTTATGCACTTTACTTGTTC+CGG | 0.355959 | 1.3:-25855105 | MS.gene65496:CDS |
| GTTCCTGGTCTTGTTGGATT+TGG | 0.357998 | 1.3:+25856430 | None:intergenic |
| TTCTTACTCCAATGATCATA+TGG | 0.361816 | 1.3:+25855419 | None:intergenic |
| AAAGGGTATCCAACTGGTAT+TGG | 0.365619 | 1.3:-25855176 | MS.gene65496:CDS |
| ATAAAATGACTAGTGATAAA+AGG | 0.372330 | 1.3:-25855778 | MS.gene65496:CDS |
| CTTGGTGTGATCAACTTTGT+TGG | 0.383711 | 1.3:-25855131 | MS.gene65496:CDS |
| GCGTTGTGCAGTACTGTTCC+TGG | 0.385561 | 1.3:-25855542 | MS.gene65496:CDS |
| GGAAGTGTTCCTGGTCTTGT+TGG | 0.393755 | 1.3:+25856424 | None:intergenic |
| AGTGTTCAAGCAGCTGTAAC+AGG | 0.394001 | 1.3:-25856397 | MS.gene65496:CDS |
| TGGATACCCTTTATCGGTCT+TGG | 0.398885 | 1.3:+25855187 | None:intergenic |
| TTCACTACAATTGTAATAGC+TGG | 0.400613 | 1.3:-25856535 | MS.gene65496:CDS |
| CCCTTGTCACAAAGTTGTTA+GGG | 0.410280 | 1.3:-25856471 | MS.gene65496:CDS |
| TGGAGACTTATTCTTATGTT+CGG | 0.411605 | 1.3:-25855953 | MS.gene65496:CDS |
| ACCAGTTGGATACCCTTTAT+CGG | 0.412868 | 1.3:+25855181 | None:intergenic |
| GTCACTCAGCAAGAAGGATC+AGG | 0.421052 | 1.3:-25855023 | MS.gene65496:CDS |
| TCAGCTGCCGCTGGAAAGGC+AGG | 0.422195 | 1.3:-25855263 | MS.gene65496:CDS |
| AAGGGTATCCAACTGGTATT+GGG | 0.427208 | 1.3:-25855175 | MS.gene65496:CDS |
| TTGGTGTGATCAACTTTGTT+GGG | 0.429517 | 1.3:-25855130 | MS.gene65496:CDS |
| AGCTGCGGCGGATATGTCTA+AGG | 0.440399 | 1.3:-25855840 | MS.gene65496:CDS |
| TGTTTGGAACATGCAGTACT+TGG | 0.440697 | 1.3:-25855703 | MS.gene65496:CDS |
| TCGTTTCGCTATTCAAATGA+TGG | 0.440848 | 1.3:-25855483 | MS.gene65496:CDS |
| ATTCGCAAAACGACATGGTT+GGG | 0.441758 | 1.3:-25855729 | MS.gene65496:CDS |
| TACAATTGTAATAGCTGGAA+TGG | 0.442664 | 1.3:-25856530 | MS.gene65496:CDS |
| GTAAGAAAGATAACAGAATT+GGG | 0.443072 | 1.3:-25855403 | MS.gene65496:CDS |
| CAGGCCAATTATTCTTTGGT+TGG | 0.445254 | 1.3:-25856351 | MS.gene65496:CDS |
| GTAACAAATTCAGTCATGTC+TGG | 0.451043 | 1.3:-25856610 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 1.3:-25856334 | MS.gene65496:CDS |
| CTATTACAATTGTAGTGAAA+TGG | 0.457116 | 1.3:+25856539 | None:intergenic |
| TGGTTTAACTCTTATTCTCA+TGG | 0.457780 | 1.3:-25856296 | MS.gene65496:CDS |
| GTAACAGGTGTTGCACTTGT+TGG | 0.458063 | 1.3:-25856382 | MS.gene65496:CDS |
| CACGGAATCTCAGCTGCCGC+TGG | 0.459217 | 1.3:-25855272 | MS.gene65496:CDS |
| TTGCCATACCATATGATCAT+TGG | 0.461981 | 1.3:-25855427 | MS.gene65496:CDS |
| GGCAGCTGAGATTCCGTGAC+AGG | 0.468128 | 1.3:+25855277 | None:intergenic |
| AAGAACTCTCTTATCATGCT+TGG | 0.472490 | 1.3:-25855149 | MS.gene65496:CDS |
| ACCGATAAAGGGTATCCAAC+TGG | 0.474139 | 1.3:-25855182 | MS.gene65496:CDS |
| TGTTCCTGGTTACTGGTTCA+CGG | 0.475880 | 1.3:-25855528 | MS.gene65496:CDS |
| GTTACAGCTGCTTGAACACT+TGG | 0.480934 | 1.3:+25856400 | None:intergenic |
| CAGTAGTACGTCAATGCAGC+TGG | 0.487577 | 1.3:+25855923 | None:intergenic |
| TTCTTAATCCCAATACCAGT+TGG | 0.488319 | 1.3:+25855167 | None:intergenic |
| TTTACTTGTTCCGGAATCAA+AGG | 0.491533 | 1.3:-25855096 | MS.gene65496:CDS |
| GGCACTAACAATGATGCTGC+TGG | 0.492284 | 1.3:+25855992 | None:intergenic |
| AATCTCAGCTGCCGCTGGAA+AGG | 0.496144 | 1.3:-25855267 | MS.gene65496:CDS |
| GCACTTGTTGGAACACTAGC+AGG | 0.499060 | 1.3:-25856370 | MS.gene65496:CDS |
| CAGCTGCATTGACGTACTAC+TGG | 0.499570 | 1.3:-25855922 | MS.gene65496:CDS |
| GGTAGCATTTATCGATTACA+TGG | 0.501537 | 1.3:-25855507 | MS.gene65496:CDS |
| TTACTTGTTCCGGAATCAAA+GGG | 0.501725 | 1.3:-25855095 | MS.gene65496:CDS |
| ATTATTCTTTGGTTGGCTTG+GGG | 0.503981 | 1.3:-25856344 | MS.gene65496:CDS |
| ACAATTGTAATAGCTGGAAT+GGG | 0.504066 | 1.3:-25856529 | MS.gene65496:CDS |
| ATCCTACCAAGACCGATAAA+GGG | 0.505979 | 1.3:-25855193 | MS.gene65496:CDS |
| CGTTTCGCTATTCAAATGAT+GGG | 0.506889 | 1.3:-25855482 | MS.gene65496:CDS |
| AATTCGCAAAACGACATGGT+TGG | 0.511343 | 1.3:-25855730 | MS.gene65496:CDS |
| TAATATACCAAAACCTTGCA+TGG | 0.511695 | 1.3:+25856090 | None:intergenic |
| ATCAAGTCCAAAGAGTGTTA+TGG | 0.512765 | 1.3:-25856239 | MS.gene65496:CDS |
| TGGAATTGTTGCTTTGATTG+TGG | 0.522228 | 1.3:-25856062 | MS.gene65496:CDS |
| GGAAAGGCAGGAGCAATTGT+TGG | 0.523447 | 1.3:-25855251 | MS.gene65496:CDS |
| AGTGATAAAAGGAATAGTTA+TGG | 0.524232 | 1.3:-25855767 | MS.gene65496:CDS |
| GACATGATTGTAGCTGAAAG+AGG | 0.545050 | 1.3:+25856163 | None:intergenic |
| CTCCAAACATAATCAAATTG+AGG | 0.545090 | 1.3:+25855971 | None:intergenic |
| AGTTGAACTTGAAGTTGAAG+AGG | 0.547307 | 1.3:-25855810 | MS.gene65496:CDS |
| CCCTAACAACTTTGTGACAA+GGG | 0.549878 | 1.3:+25856471 | None:intergenic |
| GGAATCAAAGGGAAAATCGT+TGG | 0.559818 | 1.3:-25855084 | MS.gene65496:CDS |
| ACTTGAAGTTGAAGAGGAGA+AGG | 0.567678 | 1.3:-25855804 | MS.gene65496:CDS |
| ACTCCAATGATCATATGGTA+TGG | 0.568949 | 1.3:+25855424 | None:intergenic |
| GAATGAAGGAGAAAGTGTTG+AGG | 0.572253 | 1.3:-25855045 | MS.gene65496:CDS |
| ACAGCTGCTTGAACACTTGG+TGG | 0.576896 | 1.3:+25856403 | None:intergenic |
| TCACTCAGCAAGAAGGATCA+GGG | 0.579055 | 1.3:-25855022 | MS.gene65496:CDS |
| AGGTTAAGGTCAACCTGTCA+CGG | 0.579119 | 1.3:-25855290 | MS.gene65496:CDS |
| AAATCGTTGGAGGAGTTGAG+TGG | 0.580671 | 1.3:-25855071 | MS.gene65496:CDS |
| GAGTTGAGTGGAGAGAATGA+AGG | 0.588163 | 1.3:-25855059 | MS.gene65496:CDS |
| CAGGTTGACCTTAACCTAGC+CGG | 0.591908 | 1.3:+25855296 | None:intergenic |
| AGAAATGAATGCAATTCATG+AGG | 0.592937 | 1.3:-25855597 | MS.gene65496:CDS |
| TCCCTAACAACTTTGTGACA+AGG | 0.594495 | 1.3:+25856470 | None:intergenic |
| GCCAGAAACAGCTCGTTACA+CGG | 0.595760 | 1.3:-25855888 | MS.gene65496:CDS |
| CGCAATCGGATGGATCCCTC+CGG | 0.601936 | 1.3:-25855624 | MS.gene65496:CDS |
| GTTGAGGTCACTCAGCAAGA+AGG | 0.603143 | 1.3:-25855029 | MS.gene65496:CDS |
| TACCCTTTATCGGTCTTGGT+AGG | 0.605944 | 1.3:+25855191 | None:intergenic |
| GCTACCGTGAACCAGTAACC+AGG | 0.610535 | 1.3:+25855524 | None:intergenic |
| TTTAACTCTTATTCTCATGG+TGG | 0.615633 | 1.3:-25856293 | MS.gene65496:CDS |
| ATCAAAGGGAAAATCGTTGG+AGG | 0.621552 | 1.3:-25855081 | MS.gene65496:CDS |
| ACATGATTGTAGCTGAAAGA+GGG | 0.622142 | 1.3:+25856164 | None:intergenic |
| AGTGCTTAATGCACTAGATG+TGG | 0.623842 | 1.3:-25856578 | MS.gene65496:CDS |
| TACAACATTTGTTGTACCTG+CGG | 0.625308 | 1.3:-25855327 | MS.gene65496:CDS |
| AAGCAATTCGCAAAACGACA+TGG | 0.630348 | 1.3:-25855734 | MS.gene65496:CDS |
| GAACCAAATCCAACAAGACC+AGG | 0.636167 | 1.3:-25856433 | MS.gene65496:CDS |
| GAACGCGAAACAAGCTGCGG+CGG | 0.641195 | 1.3:-25855852 | MS.gene65496:CDS |
| CACTCAGCAAGAAGGATCAG+GGG | 0.650090 | 1.3:-25855021 | MS.gene65496:CDS |
| AATTGCTCCTGCCTTTCCAG+CGG | 0.674047 | 1.3:+25855256 | None:intergenic |
| GTAGCATTTATCGATTACAT+GGG | 0.679017 | 1.3:-25855506 | MS.gene65496:CDS |
| TAAGAACGCGAAACAAGCTG+CGG | 0.705027 | 1.3:-25855855 | MS.gene65496:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGATCACAAATATA+AGG | - | chr1.3:25855576-25855595 | MS.gene65496:CDS | 15.0% |
| !! | ATAAAATGACTAGTGATAAA+AGG | - | chr1.3:25855833-25855852 | MS.gene65496:CDS | 20.0% |
| ! | AGTAAGAAAGATAACAGAAT+TGG | - | chr1.3:25856207-25856226 | MS.gene65496:CDS | 25.0% |
| ! | AGTGATAAAAGGAATAGTTA+TGG | - | chr1.3:25855844-25855863 | MS.gene65496:CDS | 25.0% |
| ! | CTATTACAATTGTAGTGAAA+TGG | + | chr1.3:25855075-25855094 | None:intergenic | 25.0% |
| ! | GTAAGAAAGATAACAGAATT+GGG | - | chr1.3:25856208-25856227 | MS.gene65496:CDS | 25.0% |
| ! | TATGCTAACAAAAAAACTAG+AGG | - | chr1.3:25855475-25855494 | MS.gene65496:CDS | 25.0% |
| !! | ACATTCTTCTTTGCTAATTT+TGG | - | chr1.3:25856252-25856271 | MS.gene65496:CDS | 25.0% |
| !! | ATGGGAAGAAAAAAAGTATA+TGG | - | chr1.3:25855295-25855314 | MS.gene65496:CDS | 25.0% |
| ACAACAAATGTTGTAGCATT+TGG | + | chr1.3:25856279-25856298 | None:intergenic | 30.0% | |
| ACAATTGTAATAGCTGGAAT+GGG | - | chr1.3:25855082-25855101 | MS.gene65496:CDS | 30.0% | |
| AGAAATGAATGCAATTCATG+AGG | - | chr1.3:25856014-25856033 | MS.gene65496:CDS | 30.0% | |
| CTCCAAACATAATCAAATTG+AGG | + | chr1.3:25855643-25855662 | None:intergenic | 30.0% | |
| TAATATACCAAAACCTTGCA+TGG | + | chr1.3:25855524-25855543 | None:intergenic | 30.0% | |
| TACAATTGTAATAGCTGGAA+TGG | - | chr1.3:25855081-25855100 | MS.gene65496:CDS | 30.0% | |
| TGCCTCAATTTGATTATGTT+TGG | - | chr1.3:25855638-25855657 | MS.gene65496:CDS | 30.0% | |
| TGGAGACTTATTCTTATGTT+CGG | - | chr1.3:25855658-25855677 | MS.gene65496:CDS | 30.0% | |
| TGGTTTAACTCTTATTCTCA+TGG | - | chr1.3:25855315-25855334 | MS.gene65496:CDS | 30.0% | |
| TTCACTACAATTGTAATAGC+TGG | - | chr1.3:25855076-25855095 | MS.gene65496:CDS | 30.0% | |
| TTCTTACTCCAATGATCATA+TGG | + | chr1.3:25856195-25856214 | None:intergenic | 30.0% | |
| TTTAACTCTTATTCTCATGG+TGG | - | chr1.3:25855318-25855337 | MS.gene65496:CDS | 30.0% | |
| ! | ATTGCATTCATTTCTTTTGC+CGG | + | chr1.3:25856009-25856028 | None:intergenic | 30.0% |
| ! | GTAGCATTTATCGATTACAT+GGG | - | chr1.3:25856105-25856124 | MS.gene65496:CDS | 30.0% |
| !! | AATTATTCTTTGGTTGGCTT+GGG | - | chr1.3:25855266-25855285 | MS.gene65496:CDS | 30.0% |
| !! | ATGCAAGGTTTTGGTATATT+AGG | - | chr1.3:25855523-25855542 | MS.gene65496:CDS | 30.0% |
| !! | CACTTTGTTTCTTTAGGTTT+TGG | - | chr1.3:25855398-25855417 | MS.gene65496:CDS | 30.0% |
| AAGAACTCTCTTATCATGCT+TGG | - | chr1.3:25856462-25856481 | MS.gene65496:CDS | 35.0% | |
| ACATGATTGTAGCTGAAAGA+GGG | + | chr1.3:25855450-25855469 | None:intergenic | 35.0% | |
| ACTCCAATGATCATATGGTA+TGG | + | chr1.3:25856190-25856209 | None:intergenic | 35.0% | |
| AGTTGAACTTGAAGTTGAAG+AGG | - | chr1.3:25855801-25855820 | MS.gene65496:CDS | 35.0% | |
| CAAGCCAACCAAAGAATAAT+TGG | + | chr1.3:25855267-25855286 | None:intergenic | 35.0% | |
| CGTTTCGCTATTCAAATGAT+GGG | - | chr1.3:25856129-25856148 | MS.gene65496:CDS | 35.0% | |
| GTTATGCACTTTACTTGTTC+CGG | - | chr1.3:25856506-25856525 | MS.gene65496:CDS | 35.0% | |
| TCGTTTCGCTATTCAAATGA+TGG | - | chr1.3:25856128-25856147 | MS.gene65496:CDS | 35.0% | |
| TTACTTGTTCCGGAATCAAA+GGG | - | chr1.3:25856516-25856535 | MS.gene65496:CDS | 35.0% | |
| TTCTTAATCCCAATACCAGT+TGG | + | chr1.3:25856447-25856466 | None:intergenic | 35.0% | |
| TTGCCATACCATATGATCAT+TGG | - | chr1.3:25856184-25856203 | MS.gene65496:CDS | 35.0% | |
| TTGGTGTGATCAACTTTGTT+GGG | - | chr1.3:25856481-25856500 | MS.gene65496:CDS | 35.0% | |
| TTTACTTGTTCCGGAATCAA+AGG | - | chr1.3:25856515-25856534 | MS.gene65496:CDS | 35.0% | |
| ! | AACGATTTTCCCTTTGATTC+CGG | + | chr1.3:25856528-25856547 | None:intergenic | 35.0% |
| ! | CAATTATTCTTTGGTTGGCT+TGG | - | chr1.3:25855265-25855284 | MS.gene65496:CDS | 35.0% |
| ! | CAGTCAGAATCTTTTCCAAA+AGG | - | chr1.3:25855954-25855973 | MS.gene65496:CDS | 35.0% |
| ! | GGTAGCATTTATCGATTACA+TGG | - | chr1.3:25856104-25856123 | MS.gene65496:CDS | 35.0% |
| ! | TGGCAACACTTTGTTTCTTT+AGG | - | chr1.3:25855392-25855411 | MS.gene65496:CDS | 35.0% |
| ! | TTGCGCTAAAAATGTCCTTT+TGG | + | chr1.3:25855972-25855991 | None:intergenic | 35.0% |
| !! | ATCAAGTCCAAAGAGTGTTA+TGG | - | chr1.3:25855372-25855391 | MS.gene65496:CDS | 35.0% |
| !! | ATGCAGTACTTGGTTTTTGT+TGG | - | chr1.3:25855918-25855937 | MS.gene65496:CDS | 35.0% |
| !! | ATTATTCTTTGGTTGGCTTG+GGG | - | chr1.3:25855267-25855286 | MS.gene65496:CDS | 35.0% |
| !! | CAAGGTTTTGGTATATTAGG+TGG | - | chr1.3:25855526-25855545 | MS.gene65496:CDS | 35.0% |
| !! | TACAACATTTGTTGTACCTG+CGG | - | chr1.3:25856284-25856303 | MS.gene65496:CDS | 35.0% |
| !! | TGGAATTGTTGCTTTGATTG+TGG | - | chr1.3:25855549-25855568 | MS.gene65496:CDS | 35.0% |
| !!! | AAGGACATTTTTAGCGCAAT+CGG | - | chr1.3:25855973-25855992 | MS.gene65496:CDS | 35.0% |
| !!! | TGTTTCTTTAGGTTTTGGCT+TGG | - | chr1.3:25855403-25855422 | MS.gene65496:CDS | 35.0% |
| !!! | TTTAGGTTTTGGCTTGGTTT+TGG | - | chr1.3:25855409-25855428 | MS.gene65496:CDS | 35.0% |
| !!! | TTTTGGCTTGGTTTTGGTAT+TGG | - | chr1.3:25855415-25855434 | MS.gene65496:CDS | 35.0% |
| AAGCAATTCGCAAAACGACA+TGG | - | chr1.3:25855877-25855896 | MS.gene65496:CDS | 40.0% | |
| AATTCGCAAAACGACATGGT+TGG | - | chr1.3:25855881-25855900 | MS.gene65496:CDS | 40.0% | |
| ACCAGTTGGATACCCTTTAT+CGG | + | chr1.3:25856433-25856452 | None:intergenic | 40.0% | |
| ACTTGAAGTTGAAGAGGAGA+AGG | - | chr1.3:25855807-25855826 | MS.gene65496:CDS | 40.0% | |
| AGTGCTTAATGCACTAGATG+TGG | - | chr1.3:25855033-25855052 | MS.gene65496:CDS | 40.0% | |
| AGTGTTGCCATAACACTCTT+TGG | + | chr1.3:25855382-25855401 | None:intergenic | 40.0% | |
| ATCAAAGGGAAAATCGTTGG+AGG | - | chr1.3:25856530-25856549 | MS.gene65496:CDS | 40.0% | |
| ATCCTACCAAGACCGATAAA+GGG | - | chr1.3:25856418-25856437 | MS.gene65496:CDS | 40.0% | |
| ATTCGCAAAACGACATGGTT+GGG | - | chr1.3:25855882-25855901 | MS.gene65496:CDS | 40.0% | |
| CAGGCCAATTATTCTTTGGT+TGG | - | chr1.3:25855260-25855279 | MS.gene65496:CDS | 40.0% | |
| CCCTAACAACTTTGTGACAA+GGG | + | chr1.3:25855143-25855162 | None:intergenic | 40.0% | |
| CCCTTGTCACAAAGTTGTTA+GGG | - | chr1.3:25855140-25855159 | MS.gene65496:CDS | 40.0% | |
| CTAGCAGGCCAATTATTCTT+TGG | - | chr1.3:25855256-25855275 | MS.gene65496:CDS | 40.0% | |
| GACATGATTGTAGCTGAAAG+AGG | + | chr1.3:25855451-25855470 | None:intergenic | 40.0% | |
| GGAATCAAAGGGAAAATCGT+TGG | - | chr1.3:25856527-25856546 | MS.gene65496:CDS | 40.0% | |
| TCCCTAACAACTTTGTGACA+AGG | + | chr1.3:25855144-25855163 | None:intergenic | 40.0% | |
| TCCCTTGTCACAAAGTTGTT+AGG | - | chr1.3:25855139-25855158 | MS.gene65496:CDS | 40.0% | |
| ! | AGATTTTTCCGGCTAGGTTA+AGG | - | chr1.3:25856307-25856326 | MS.gene65496:CDS | 40.0% |
| ! | CATTCATTTCTTTTGCCGGA+GGG | + | chr1.3:25856005-25856024 | None:intergenic | 40.0% |
| ! | CTTGGTGTGATCAACTTTGT+TGG | - | chr1.3:25856480-25856499 | MS.gene65496:CDS | 40.0% |
| ! | GCTGGATTTTCTTCAAAGGT+GGG | + | chr1.3:25855604-25855623 | None:intergenic | 40.0% |
| ! | GTTTTTGCCATGCAAGGTTT+TGG | - | chr1.3:25855514-25855533 | MS.gene65496:CDS | 40.0% |
| ! | TGCTGCTGGATTTTCTTCAA+AGG | + | chr1.3:25855608-25855627 | None:intergenic | 40.0% |
| ! | TGCTGGATTTTCTTCAAAGG+TGG | + | chr1.3:25855605-25855624 | None:intergenic | 40.0% |
| ! | TGTTTGGAACATGCAGTACT+TGG | - | chr1.3:25855908-25855927 | MS.gene65496:CDS | 40.0% |
| !! | AAAGGGTATCCAACTGGTAT+TGG | - | chr1.3:25856435-25856454 | MS.gene65496:CDS | 40.0% |
| !! | AAGGGTATCCAACTGGTATT+GGG | - | chr1.3:25856436-25856455 | MS.gene65496:CDS | 40.0% |
| !! | GAATGAAGGAGAAAGTGTTG+AGG | - | chr1.3:25856566-25856585 | MS.gene65496:CDS | 40.0% |
| !! | GGTTTTGGTATATTAGGTGG+TGG | - | chr1.3:25855529-25855548 | MS.gene65496:CDS | 40.0% |
| !!! | ACATTTTTAGCGCAATCGGA+TGG | - | chr1.3:25855977-25855996 | MS.gene65496:CDS | 40.0% |
| AAATCGTTGGAGGAGTTGAG+TGG | - | chr1.3:25856540-25856559 | MS.gene65496:CDS | 45.0% | |
| AGGTTAAGGTCAACCTGTCA+CGG | - | chr1.3:25856321-25856340 | MS.gene65496:CDS | 45.0% | |
| AGTGTTCAAGCAGCTGTAAC+AGG | - | chr1.3:25855214-25855233 | MS.gene65496:CDS | 45.0% | |
| GAACCAAATCCAACAAGACC+AGG | - | chr1.3:25855178-25855197 | MS.gene65496:CDS | 45.0% | |
| GAGTTGAGTGGAGAGAATGA+AGG | - | chr1.3:25856552-25856571 | MS.gene65496:CDS | 45.0% | |
| GATCCTACCAAGACCGATAA+AGG | - | chr1.3:25856417-25856436 | MS.gene65496:CDS | 45.0% | |
| GGAGCAATTGTTGGTGCATT+TGG | - | chr1.3:25856369-25856388 | MS.gene65496:CDS | 45.0% | |
| GTTACAGCTGCTTGAACACT+TGG | + | chr1.3:25855214-25855233 | None:intergenic | 45.0% | |
| TAAGAACGCGAAACAAGCTG+CGG | - | chr1.3:25855756-25855775 | MS.gene65496:CDS | 45.0% | |
| TACCCTTTATCGGTCTTGGT+AGG | + | chr1.3:25856423-25856442 | None:intergenic | 45.0% | |
| TCACTCAGCAAGAAGGATCA+GGG | - | chr1.3:25856589-25856608 | MS.gene65496:CDS | 45.0% | |
| TGGATACCCTTTATCGGTCT+TGG | + | chr1.3:25856427-25856446 | None:intergenic | 45.0% | |
| ! | GCATTCATTTCTTTTGCCGG+AGG | + | chr1.3:25856006-25856025 | None:intergenic | 45.0% |
| ! | GTAACAGGTGTTGCACTTGT+TGG | - | chr1.3:25855229-25855248 | MS.gene65496:CDS | 45.0% |
| ! | GTGGTATGTTCTGTTGCTTC+AGG | - | chr1.3:25855337-25855356 | MS.gene65496:CDS | 45.0% |
| ! | GTTGCTTCAGGACTCTCTTT+TGG | - | chr1.3:25855349-25855368 | MS.gene65496:CDS | 45.0% |
| ! | TGTACCTGCGGAGATTTTTC+CGG | - | chr1.3:25856296-25856315 | MS.gene65496:CDS | 45.0% |
| !! | ACCGATAAAGGGTATCCAAC+TGG | - | chr1.3:25856429-25856448 | MS.gene65496:CDS | 45.0% |
| !! | GTTCCTGGTCTTGTTGGATT+TGG | + | chr1.3:25855184-25855203 | None:intergenic | 45.0% |
| !! | TGTTCCTGGTTACTGGTTCA+CGG | - | chr1.3:25856083-25856102 | MS.gene65496:CDS | 45.0% |
| !!! | TGGCTTGGTTTTGGTATTGG+TGG | - | chr1.3:25855418-25855437 | MS.gene65496:CDS | 45.0% |
| AATTGCTCCTGCCTTTCCAG+CGG | + | chr1.3:25856358-25856377 | None:intergenic | 50.0% | |
| ACAGCTGCTTGAACACTTGG+TGG | + | chr1.3:25855211-25855230 | None:intergenic | 50.0% | |
| CACTCAGCAAGAAGGATCAG+GGG | - | chr1.3:25856590-25856609 | MS.gene65496:CDS | 50.0% | |
| CAGTAGTACGTCAATGCAGC+TGG | + | chr1.3:25855691-25855710 | None:intergenic | 50.0% | |
| GCAGTACTGTTCCTGGTTAC+TGG | - | chr1.3:25856076-25856095 | MS.gene65496:CDS | 50.0% | |
| GCCAGAAACAGCTCGTTACA+CGG | - | chr1.3:25855723-25855742 | MS.gene65496:CDS | 50.0% | |
| GGAAAGGCAGGAGCAATTGT+TGG | - | chr1.3:25856360-25856379 | MS.gene65496:CDS | 50.0% | |
| GGCACTAACAATGATGCTGC+TGG | + | chr1.3:25855622-25855641 | None:intergenic | 50.0% | |
| GTCACTCAGCAAGAAGGATC+AGG | - | chr1.3:25856588-25856607 | MS.gene65496:CDS | 50.0% | |
| GTTGAGGTCACTCAGCAAGA+AGG | - | chr1.3:25856582-25856601 | MS.gene65496:CDS | 50.0% | |
| ! | CAGCTGCATTGACGTACTAC+TGG | - | chr1.3:25855689-25855708 | MS.gene65496:CDS | 50.0% |
| ! | CAGGTTGACCTTAACCTAGC+CGG | + | chr1.3:25856318-25856337 | None:intergenic | 50.0% |
| ! | GCACTTGTTGGAACACTAGC+AGG | - | chr1.3:25855241-25855260 | MS.gene65496:CDS | 50.0% |
| !! | ACACTTGGTGGAAGTGTTCC+TGG | + | chr1.3:25855199-25855218 | None:intergenic | 50.0% |
| !! | CGACATGGTTGGGCTTTGTT+TGG | - | chr1.3:25855892-25855911 | MS.gene65496:CDS | 50.0% |
| !! | GGAAGTGTTCCTGGTCTTGT+TGG | + | chr1.3:25855190-25855209 | None:intergenic | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | - | chr1.3:25855277-25855296 | MS.gene65496:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | - | chr1.3:25855276-25855295 | MS.gene65496:CDS | 50.0% |
| !!! | GCTGCTGTTTTTGCCATGCA+AGG | - | chr1.3:25855508-25855527 | MS.gene65496:CDS | 50.0% |
| AATCTCAGCTGCCGCTGGAA+AGG | - | chr1.3:25856344-25856363 | MS.gene65496:CDS | 55.0% | |
| AGCTGCGGCGGATATGTCTA+AGG | - | chr1.3:25855771-25855790 | MS.gene65496:CDS | 55.0% | |
| CTAGCCGGAAAAATCTCCGC+AGG | + | chr1.3:25856303-25856322 | None:intergenic | 55.0% | |
| GCGTTGTGCAGTACTGTTCC+TGG | - | chr1.3:25856069-25856088 | MS.gene65496:CDS | 55.0% | |
| GCTACCGTGAACCAGTAACC+AGG | + | chr1.3:25856090-25856109 | None:intergenic | 55.0% | |
| ! | CTGCGGAGATTTTTCCGGCT+AGG | - | chr1.3:25856301-25856320 | MS.gene65496:CDS | 55.0% |
| ! | GCCGTGTAACGAGCTGTTTC+TGG | + | chr1.3:25855727-25855746 | None:intergenic | 55.0% |
| CGCAATCGGATGGATCCCTC+CGG | - | chr1.3:25855987-25856006 | MS.gene65496:CDS | 60.0% | |
| GAACGCGAAACAAGCTGCGG+CGG | - | chr1.3:25855759-25855778 | MS.gene65496:CDS | 60.0% | |
| GGCAGCTGAGATTCCGTGAC+AGG | + | chr1.3:25856337-25856356 | None:intergenic | 60.0% | |
| CACGGAATCTCAGCTGCCGC+TGG | - | chr1.3:25856339-25856358 | MS.gene65496:CDS | 65.0% | |
| TCAGCTGCCGCTGGAAAGGC+AGG | - | chr1.3:25856348-25856367 | MS.gene65496:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 25855016 | 25856617 | 25855016 | ID=MS.gene65496 |
| chr1.3 | mRNA | 25855016 | 25856617 | 25855016 | ID=MS.gene65496.t1;Parent=MS.gene65496 |
| chr1.3 | exon | 25855016 | 25856617 | 25855016 | ID=MS.gene65496.t1.exon1;Parent=MS.gene65496.t1 |
| chr1.3 | CDS | 25855016 | 25856617 | 25855016 | ID=cds.MS.gene65496.t1;Parent=MS.gene65496.t1 |
| Gene Sequence |
| Protein sequence |
