Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053402.t1 | XP_003590037.1 | 98.9 | 533 | 6 | 0 | 1 | 533 | 1 | 533 | 1.80E-302 | 1047.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053402.t1 | O48639 | 80.8 | 516 | 97 | 2 | 4 | 519 | 5 | 518 | 9.8e-241 | 833.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053402.t1 | A5H2U5 | 98.9 | 533 | 6 | 0 | 1 | 533 | 1 | 533 | 1.3e-302 | 1047.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053402 | MS.gene65496 | 0.815482 | 9.04E-52 | -1.69E-46 |
| MS.gene053402 | MS.gene65947 | 0.834619 | 2.70E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053402.t1 | MTR_1g043200 | 98.874 | 533 | 6 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1084 |
| MS.gene053402.t1 | MTR_1g043220 | 97.925 | 530 | 11 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1069 |
| MS.gene053402.t1 | MTR_1g043290 | 97.186 | 533 | 15 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1066 |
| MS.gene053402.t1 | MTR_1g074930 | 84.630 | 527 | 81 | 0 | 1 | 527 | 1 | 527 | 0.0 | 945 |
| MS.gene053402.t1 | MTR_3g082700 | 77.953 | 508 | 111 | 1 | 4 | 511 | 5 | 511 | 0.0 | 838 |
| MS.gene053402.t1 | MTR_1g069935 | 75.573 | 524 | 124 | 2 | 4 | 527 | 5 | 524 | 0.0 | 825 |
| MS.gene053402.t1 | MTR_7g096870 | 76.641 | 518 | 117 | 2 | 4 | 521 | 5 | 518 | 0.0 | 814 |
| MS.gene053402.t1 | MTR_7g096880 | 76.575 | 508 | 113 | 2 | 4 | 511 | 5 | 506 | 0.0 | 795 |
| MS.gene053402.t1 | MTR_1g074940 | 75.342 | 511 | 108 | 4 | 4 | 511 | 5 | 500 | 0.0 | 790 |
| MS.gene053402.t1 | MTR_1g069930 | 68.093 | 514 | 161 | 2 | 4 | 517 | 5 | 515 | 0.0 | 740 |
| MS.gene053402.t1 | MTR_1g028600 | 62.548 | 518 | 180 | 4 | 5 | 522 | 3 | 506 | 0.0 | 646 |
| MS.gene053402.t1 | MTR_5g068140 | 57.299 | 548 | 208 | 5 | 1 | 532 | 1 | 538 | 0.0 | 615 |
| MS.gene053402.t1 | MTR_4g083960 | 53.962 | 530 | 222 | 10 | 1 | 524 | 1 | 514 | 0.0 | 533 |
| MS.gene053402.t1 | MTR_3g084110 | 24.512 | 461 | 278 | 18 | 68 | 515 | 69 | 472 | 1.36e-16 | 82.8 |
| MS.gene053402.t1 | MTR_7g005910 | 22.500 | 440 | 274 | 17 | 86 | 514 | 92 | 475 | 2.08e-14 | 76.3 |
| MS.gene053402.t1 | MTR_1g116660 | 21.364 | 440 | 274 | 15 | 89 | 514 | 97 | 478 | 2.85e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053402.t1 | AT5G43360 | 80.814 | 516 | 97 | 2 | 4 | 519 | 5 | 518 | 0.0 | 858 |
| MS.gene053402.t1 | AT3G54700 | 80.426 | 516 | 96 | 2 | 4 | 519 | 5 | 515 | 0.0 | 855 |
| MS.gene053402.t1 | AT3G54700 | 80.426 | 516 | 96 | 2 | 4 | 519 | 5 | 515 | 0.0 | 855 |
| MS.gene053402.t1 | AT5G43350 | 79.651 | 516 | 103 | 2 | 4 | 519 | 5 | 518 | 0.0 | 851 |
| MS.gene053402.t1 | AT2G38940 | 77.583 | 513 | 114 | 1 | 4 | 516 | 5 | 516 | 0.0 | 838 |
| MS.gene053402.t1 | AT2G32830 | 76.596 | 517 | 119 | 2 | 7 | 522 | 8 | 523 | 0.0 | 831 |
| MS.gene053402.t1 | AT5G43370 | 79.457 | 516 | 104 | 2 | 4 | 519 | 5 | 518 | 0.0 | 820 |
| MS.gene053402.t1 | AT5G43370 | 79.457 | 516 | 104 | 2 | 4 | 519 | 5 | 518 | 0.0 | 820 |
| MS.gene053402.t1 | AT5G43340 | 65.192 | 520 | 162 | 4 | 7 | 524 | 9 | 511 | 0.0 | 707 |
| MS.gene053402.t1 | AT1G76430 | 49.060 | 532 | 246 | 11 | 4 | 526 | 3 | 518 | 4.61e-172 | 497 |
| MS.gene053402.t1 | AT1G20860 | 49.905 | 529 | 247 | 9 | 5 | 527 | 3 | 519 | 8.84e-170 | 491 |
| MS.gene053402.t1 | AT1G20860 | 49.905 | 529 | 247 | 9 | 5 | 527 | 55 | 571 | 3.48e-169 | 491 |
| MS.gene053402.t1 | AT4G08878 | 63.985 | 261 | 91 | 2 | 30 | 290 | 13 | 270 | 2.10e-113 | 338 |
| MS.gene053402.t1 | AT4G08895 | 55.714 | 140 | 30 | 1 | 321 | 460 | 23 | 130 | 6.95e-47 | 161 |
| MS.gene053402.t1 | AT2G43330 | 22.149 | 456 | 294 | 15 | 68 | 514 | 72 | 475 | 1.56e-11 | 67.0 |
Find 103 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCTTCTTTGCTAATTT+TGG | 0.173620 | 1.4:-27566851 | MS.gene053402:CDS |
| CACTTTGTTTCTTTAGGTTT+TGG | 0.183884 | 1.4:-27567705 | MS.gene053402:CDS |
| GTTGCTTCAGGACTCTCTTT+TGG | 0.216739 | 1.4:-27567754 | MS.gene053402:CDS |
| GCAGCACTGTTCCTGGTTAC+TGG | 0.217782 | 1.4:-27567027 | MS.gene053402:CDS |
| GCCGTGTAACGAGCTGTTTC+TGG | 0.242717 | 1.4:+27567379 | None:intergenic |
| AATTATTCTTTGGTTGGCTT+GGG | 0.264750 | 1.4:-27567837 | MS.gene053402:CDS |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 1.4:-27567827 | MS.gene053402:CDS |
| TATATTTGATCACAAATATA+AGG | 0.273690 | 1.4:-27567527 | MS.gene053402:CDS |
| GTGGTTTGTTCTGTTGCTTC+AGG | 0.274743 | 1.4:-27567766 | MS.gene053402:CDS |
| CTAGCTGGCCAATTATTCTT+TGG | 0.275331 | 1.4:-27567847 | MS.gene053402:CDS |
| TCTCTTGTCACAAAGTTGTT+AGG | 0.275819 | 1.4:-27567964 | MS.gene053402:CDS |
| CGACATGGTTGGGCTTTGTT+TGG | 0.280959 | 1.4:-27567211 | MS.gene053402:CDS |
| TGGCAACACTTTGTTTCTTT+AGG | 0.286390 | 1.4:-27567711 | MS.gene053402:CDS |
| GGAGCAATTGTTGGTGCATT+TGG | 0.287811 | 1.4:-27566734 | MS.gene053402:CDS |
| GATCCTACCAAGACCGATAA+AGG | 0.287833 | 1.4:-27566686 | MS.gene053402:CDS |
| TGCCTCAATTTGATTATGTT+TGG | 0.291088 | 1.4:-27567465 | MS.gene053402:CDS |
| CAAGCCAACCAAAGAATAAT+TGG | 0.296172 | 1.4:+27567839 | None:intergenic |
| CAATTATTCTTTGGTTGGCT+TGG | 0.296970 | 1.4:-27567838 | MS.gene053402:CDS |
| ACACTTGGTGGAAGTGTTCC+TGG | 0.300768 | 1.4:+27567907 | None:intergenic |
| AGCAAGGAAGAGAATAGAAT+TGG | 0.305550 | 1.4:-27566896 | MS.gene053402:CDS |
| TCAGTCATGTCTGGAGAATT+AGG | 0.311053 | 1.4:-27568093 | None:intergenic |
| AGTGTTGCCATAACACTCTT+TGG | 0.315160 | 1.4:+27567724 | None:intergenic |
| ACAACAAATGTTGTAGCATT+TGG | 0.331077 | 1.4:+27566827 | None:intergenic |
| GTTATGCACTTTACTTGTTC+CGG | 0.355959 | 1.4:-27566597 | MS.gene053402:CDS |
| GTTCCTGGTCTTGTTGGATT+TGG | 0.357998 | 1.4:+27567922 | None:intergenic |
| AAAGGGTATCCAACTGGTAT+TGG | 0.365619 | 1.4:-27566668 | MS.gene053402:CDS |
| CTTGGTGTGATCAACTTTGT+TGG | 0.383711 | 1.4:-27566623 | MS.gene053402:CDS |
| GCGTTGTGCAGCACTGTTCC+TGG | 0.384656 | 1.4:-27567034 | MS.gene053402:CDS |
| GGAAGTGTTCCTGGTCTTGT+TGG | 0.393755 | 1.4:+27567916 | None:intergenic |
| TGGATACCCTTTATCGGTCT+TGG | 0.398885 | 1.4:+27566679 | None:intergenic |
| CTCTTGTCACAAAGTTGTTA+GGG | 0.407797 | 1.4:-27567963 | MS.gene053402:CDS |
| TCCTTGCTCCAATGATCATA+TGG | 0.411149 | 1.4:+27566911 | None:intergenic |
| TGGAGACTTATTCTTATGTT+CGG | 0.411605 | 1.4:-27567445 | MS.gene053402:CDS |
| ACCAGTTGGATACCCTTTAT+CGG | 0.412868 | 1.4:+27566673 | None:intergenic |
| TTCACTACAATTGTGATAGC+TGG | 0.416291 | 1.4:-27568027 | MS.gene053402:CDS |
| AGTGTTCAATCAGCTGTAAC+TGG | 0.417885 | 1.4:-27567889 | MS.gene053402:CDS |
| CTGGCCAATTATTCTTTGGT+TGG | 0.426319 | 1.4:-27567843 | MS.gene053402:CDS |
| AAGGGTATCCAACTGGTATT+GGG | 0.427208 | 1.4:-27566667 | MS.gene053402:CDS |
| TTGGTGTGATCAACTTTGTT+GGG | 0.429517 | 1.4:-27566622 | MS.gene053402:CDS |
| GTAACTGGTGTTGCACTTGT+TGG | 0.429691 | 1.4:-27567874 | MS.gene053402:CDS |
| GTCACTCAGCAAGAAGGATC+GGG | 0.435050 | 1.4:-27566515 | MS.gene053402:CDS |
| TTGCCATACCATATGATCAT+TGG | 0.440480 | 1.4:-27566919 | MS.gene053402:CDS |
| AGCTGCAGCGGATATGTCTA+AGG | 0.440556 | 1.4:-27567332 | MS.gene053402:CDS |
| TGTTTGGAACATGCAGTACT+TGG | 0.440697 | 1.4:-27567195 | MS.gene053402:CDS |
| TCGTTTCGCTATTCAAATGA+TGG | 0.440848 | 1.4:-27566975 | MS.gene053402:CDS |
| ATTCGCAAAACGACATGGTT+GGG | 0.441758 | 1.4:-27567221 | MS.gene053402:CDS |
| GTAACAAATTCAGTCATGTC+TGG | 0.451043 | 1.4:-27568102 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 1.4:-27567826 | MS.gene053402:CDS |
| TGGTTTAACTCTTATTCTCA+TGG | 0.457780 | 1.4:-27567788 | MS.gene053402:CDS |
| CATGGAATCTCAGCTGCTAC+AGG | 0.468627 | 1.4:-27566764 | MS.gene053402:CDS |
| AAGAACTCTCTTATCATGCT+TGG | 0.472490 | 1.4:-27566641 | MS.gene053402:CDS |
| ACCGATAAAGGGTATCCAAC+TGG | 0.474139 | 1.4:-27566674 | MS.gene053402:CDS |
| TACAATTGTGATAGCTGGAA+TGG | 0.475457 | 1.4:-27568022 | MS.gene053402:CDS |
| TGTAGCATTTATCGATTACA+TGG | 0.480042 | 1.4:-27566999 | MS.gene053402:CDS |
| CAGTAGTACGTCAATGCAGC+TGG | 0.487577 | 1.4:+27567415 | None:intergenic |
| TGGAATTATTGCTTTGATTG+TGG | 0.488114 | 1.4:-27567554 | MS.gene053402:CDS |
| TTCTTAATCCCAATACCAGT+TGG | 0.488319 | 1.4:+27566659 | None:intergenic |
| TTTACTTGTTCCGGAATCAA+AGG | 0.491533 | 1.4:-27566588 | MS.gene053402:CDS |
| GGCACTAACAATGATGCTGC+TGG | 0.492284 | 1.4:+27567484 | None:intergenic |
| GCACTTGTTGGAACACTAGC+TGG | 0.493587 | 1.4:-27567862 | MS.gene053402:CDS |
| GCAAGGAAGAGAATAGAATT+GGG | 0.494872 | 1.4:-27566895 | MS.gene053402:CDS |
| CAGCTGCATTGACGTACTAC+TGG | 0.499570 | 1.4:-27567414 | MS.gene053402:CDS |
| TTACTTGTTCCGGAATCAAA+GGG | 0.501725 | 1.4:-27566587 | MS.gene053402:CDS |
| GGAAAGGCAGGAGCAATTGT+TGG | 0.502456 | 1.4:-27566743 | MS.gene053402:CDS |
| ATTATTCTTTGGTTGGCTTG+GGG | 0.503981 | 1.4:-27567836 | MS.gene053402:CDS |
| GTTACAGCTGATTGAACACT+TGG | 0.505672 | 1.4:+27567892 | None:intergenic |
| ATCCTACCAAGACCGATAAA+GGG | 0.505979 | 1.4:-27566685 | MS.gene053402:CDS |
| CGTTTCGCTATTCAAATGAT+GGG | 0.506889 | 1.4:-27566974 | MS.gene053402:CDS |
| AATTCGCAAAACGACATGGT+TGG | 0.511343 | 1.4:-27567222 | MS.gene053402:CDS |
| ATCAAGTCCAAAGAGTGTTA+TGG | 0.512765 | 1.4:-27567731 | MS.gene053402:CDS |
| TCAGCTGCTACAGGAAAGGC+AGG | 0.522414 | 1.4:-27566755 | MS.gene053402:CDS |
| ACAATTGTGATAGCTGGAAT+GGG | 0.523177 | 1.4:-27568021 | MS.gene053402:CDS |
| AGTGATAAAAGGAATAGTTA+TGG | 0.524232 | 1.4:-27567259 | MS.gene053402:CDS |
| AGGTTAAGGTCTACTTGTCA+TGG | 0.528893 | 1.4:-27566782 | MS.gene053402:CDS |
| GGTCACTCAGCAAGAAGGAT+CGG | 0.537339 | 1.4:-27566516 | MS.gene053402:CDS |
| GACATGATTGTAGCTGAAAG+AGG | 0.538387 | 1.4:+27567655 | None:intergenic |
| CTCCAAACATAATCAAATTG+AGG | 0.545090 | 1.4:+27567463 | None:intergenic |
| AGTTGAACTTGAAGTTGAAG+AGG | 0.547307 | 1.4:-27567302 | MS.gene053402:CDS |
| ACTTGAAGTTGAAGAGGAGA+AGG | 0.556695 | 1.4:-27567296 | MS.gene053402:CDS |
| GGAATCAAAGGGAAAATCGT+TGG | 0.559818 | 1.4:-27566576 | MS.gene053402:CDS |
| ACAGCTGATTGAACACTTGG+TGG | 0.566339 | 1.4:+27567895 | None:intergenic |
| GAATGAAGGAGAAAGTGTTG+AGG | 0.572253 | 1.4:-27566537 | MS.gene053402:CDS |
| TTTAACTCTTATTCTCATGG+TGG | 0.573974 | 1.4:-27567785 | MS.gene053402:CDS |
| GAACCAAATCCAACAAGACC+AGG | 0.579480 | 1.4:-27567925 | MS.gene053402:CDS |
| AAATCGTTGGAGGAGTTGAG+TGG | 0.580671 | 1.4:-27566563 | MS.gene053402:CDS |
| GCTCCAATGATCATATGGTA+TGG | 0.582429 | 1.4:+27566916 | None:intergenic |
| GAGTTGAGTGGAGAGAATGA+AGG | 0.588163 | 1.4:-27566551 | MS.gene053402:CDS |
| AGAAATGAATGCAATTCATG+AGG | 0.592937 | 1.4:-27567089 | MS.gene053402:CDS |
| GCCAGAAACAGCTCGTTACA+CGG | 0.595760 | 1.4:-27567380 | MS.gene053402:CDS |
| CAAGTAGACCTTAACCTAGC+CGG | 0.597095 | 1.4:+27566788 | None:intergenic |
| CGCAATCGGATGGATCCCTC+CGG | 0.601936 | 1.4:-27567116 | MS.gene053402:CDS |
| GTTGAGGTCACTCAGCAAGA+AGG | 0.603143 | 1.4:-27566521 | MS.gene053402:CDS |
| TACCCTTTATCGGTCTTGGT+AGG | 0.605944 | 1.4:+27566683 | None:intergenic |
| GCTACAGTGAACCAGTAACC+AGG | 0.610378 | 1.4:+27567016 | None:intergenic |
| AATCTCAGCTGCTACAGGAA+AGG | 0.611021 | 1.4:-27566759 | MS.gene053402:CDS |
| ACCATATGATCATTGGAGCA+AGG | 0.612455 | 1.4:-27566912 | MS.gene053402:CDS |
| ATCAAAGGGAAAATCGTTGG+AGG | 0.621552 | 1.4:-27566573 | MS.gene053402:CDS |
| AAGCAATTCGCAAAACGACA+TGG | 0.630348 | 1.4:-27567226 | MS.gene053402:CDS |
| GAACGCGAAACAAGCTGCAG+CGG | 0.635840 | 1.4:-27567344 | MS.gene053402:CDS |
| TCACTCAGCAAGAAGGATCG+GGG | 0.638943 | 1.4:-27566514 | MS.gene053402:CDS |
| GTAGCATTTATCGATTACAT+GGG | 0.652364 | 1.4:-27566998 | MS.gene053402:CDS |
| CACTCAGCAAGAAGGATCGG+GGG | 0.661869 | 1.4:-27566513 | MS.gene053402:CDS |
| AGTGCTTAATGCACTTGATG+TGG | 0.688145 | 1.4:-27568070 | MS.gene053402:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGATCACAAATATA+AGG | - | chr1.4:27567068-27567087 | MS.gene053402:CDS | 15.0% |
| !! | AAAAAATGACTAGTGATAAA+AGG | - | chr1.4:27567325-27567344 | MS.gene053402:CDS | 20.0% |
| ! | AGTGATAAAAGGAATAGTTA+TGG | - | chr1.4:27567336-27567355 | MS.gene053402:CDS | 25.0% |
| ! | TATGCTAACAAAAAAACTAG+AGG | - | chr1.4:27566967-27566986 | MS.gene053402:CDS | 25.0% |
| !! | ACATTCTTCTTTGCTAATTT+TGG | - | chr1.4:27567744-27567763 | MS.gene053402:CDS | 25.0% |
| !! | ATGGGAAGAAAAAAAGTATA+TGG | - | chr1.4:27566787-27566806 | MS.gene053402:CDS | 25.0% |
| ACAACAAATGTTGTAGCATT+TGG | + | chr1.4:27567771-27567790 | None:intergenic | 30.0% | |
| AGAAATGAATGCAATTCATG+AGG | - | chr1.4:27567506-27567525 | MS.gene053402:CDS | 30.0% | |
| CTCCAAACATAATCAAATTG+AGG | + | chr1.4:27567135-27567154 | None:intergenic | 30.0% | |
| TGCCTCAATTTGATTATGTT+TGG | - | chr1.4:27567130-27567149 | MS.gene053402:CDS | 30.0% | |
| TGGAATTATTGCTTTGATTG+TGG | - | chr1.4:27567041-27567060 | MS.gene053402:CDS | 30.0% | |
| TGGAGACTTATTCTTATGTT+CGG | - | chr1.4:27567150-27567169 | MS.gene053402:CDS | 30.0% | |
| TGGTTTAACTCTTATTCTCA+TGG | - | chr1.4:27566807-27566826 | MS.gene053402:CDS | 30.0% | |
| TTTAACTCTTATTCTCATGG+TGG | - | chr1.4:27566810-27566829 | MS.gene053402:CDS | 30.0% | |
| ! | ATTGCATTCATTTCTTTTGC+CGG | + | chr1.4:27567501-27567520 | None:intergenic | 30.0% |
| ! | GTAGCATTTATCGATTACAT+GGG | - | chr1.4:27567597-27567616 | MS.gene053402:CDS | 30.0% |
| ! | TGTAGCATTTATCGATTACA+TGG | - | chr1.4:27567596-27567615 | MS.gene053402:CDS | 30.0% |
| !! | AATTATTCTTTGGTTGGCTT+GGG | - | chr1.4:27566758-27566777 | MS.gene053402:CDS | 30.0% |
| !! | CACTTTGTTTCTTTAGGTTT+TGG | - | chr1.4:27566890-27566909 | MS.gene053402:CDS | 30.0% |
| AAGAACTCTCTTATCATGCT+TGG | - | chr1.4:27567954-27567973 | MS.gene053402:CDS | 35.0% | |
| ACAATTGTGATAGCTGGAAT+GGG | - | chr1.4:27566574-27566593 | MS.gene053402:CDS | 35.0% | |
| AGCAAGGAAGAGAATAGAAT+TGG | - | chr1.4:27567699-27567718 | MS.gene053402:CDS | 35.0% | |
| AGTTGAACTTGAAGTTGAAG+AGG | - | chr1.4:27567293-27567312 | MS.gene053402:CDS | 35.0% | |
| CAAGCCAACCAAAGAATAAT+TGG | + | chr1.4:27566759-27566778 | None:intergenic | 35.0% | |
| CGTTTCGCTATTCAAATGAT+GGG | - | chr1.4:27567621-27567640 | MS.gene053402:CDS | 35.0% | |
| CTCTTGTCACAAAGTTGTTA+GGG | - | chr1.4:27566632-27566651 | MS.gene053402:CDS | 35.0% | |
| GCAAGGAAGAGAATAGAATT+GGG | - | chr1.4:27567700-27567719 | MS.gene053402:CDS | 35.0% | |
| GTTATGCACTTTACTTGTTC+CGG | - | chr1.4:27567998-27568017 | MS.gene053402:CDS | 35.0% | |
| TACAATTGTGATAGCTGGAA+TGG | - | chr1.4:27566573-27566592 | MS.gene053402:CDS | 35.0% | |
| TCGTTTCGCTATTCAAATGA+TGG | - | chr1.4:27567620-27567639 | MS.gene053402:CDS | 35.0% | |
| TCTCTTGTCACAAAGTTGTT+AGG | - | chr1.4:27566631-27566650 | MS.gene053402:CDS | 35.0% | |
| TTACTTGTTCCGGAATCAAA+GGG | - | chr1.4:27568008-27568027 | MS.gene053402:CDS | 35.0% | |
| TTCACTACAATTGTGATAGC+TGG | - | chr1.4:27566568-27566587 | MS.gene053402:CDS | 35.0% | |
| TTCTTAATCCCAATACCAGT+TGG | + | chr1.4:27567939-27567958 | None:intergenic | 35.0% | |
| TTGCCATACCATATGATCAT+TGG | - | chr1.4:27567676-27567695 | MS.gene053402:CDS | 35.0% | |
| TTGGTGTGATCAACTTTGTT+GGG | - | chr1.4:27567973-27567992 | MS.gene053402:CDS | 35.0% | |
| TTTACTTGTTCCGGAATCAA+AGG | - | chr1.4:27568007-27568026 | MS.gene053402:CDS | 35.0% | |
| ! | AACGATTTTCCCTTTGATTC+CGG | + | chr1.4:27568020-27568039 | None:intergenic | 35.0% |
| ! | CAATTATTCTTTGGTTGGCT+TGG | - | chr1.4:27566757-27566776 | MS.gene053402:CDS | 35.0% |
| ! | CAGTCAGAATCTTTTCCAAA+AGG | - | chr1.4:27567446-27567465 | MS.gene053402:CDS | 35.0% |
| ! | TGGCAACACTTTGTTTCTTT+AGG | - | chr1.4:27566884-27566903 | MS.gene053402:CDS | 35.0% |
| ! | TTGCGCTAAAAATGTCCTTT+TGG | + | chr1.4:27567464-27567483 | None:intergenic | 35.0% |
| !! | ATCAAGTCCAAAGAGTGTTA+TGG | - | chr1.4:27566864-27566883 | MS.gene053402:CDS | 35.0% |
| !! | ATGCAAGGTTTTGGTATCTT+AGG | - | chr1.4:27567015-27567034 | MS.gene053402:CDS | 35.0% |
| !! | ATGCAGTACTTGGTTTTTGT+TGG | - | chr1.4:27567410-27567429 | MS.gene053402:CDS | 35.0% |
| !! | ATTATTCTTTGGTTGGCTTG+GGG | - | chr1.4:27566759-27566778 | MS.gene053402:CDS | 35.0% |
| !! | GTTTTTGCTATGCAAGGTTT+TGG | - | chr1.4:27567006-27567025 | MS.gene053402:CDS | 35.0% |
| !!! | AAGGACATTTTTAGCGCAAT+CGG | - | chr1.4:27567465-27567484 | MS.gene053402:CDS | 35.0% |
| !!! | TGTTTCTTTAGGTTTTGGCT+TGG | - | chr1.4:27566895-27566914 | MS.gene053402:CDS | 35.0% |
| !!! | TTTAGGTTTTGGCTTGGTTT+TGG | - | chr1.4:27566901-27566920 | MS.gene053402:CDS | 35.0% |
| !!! | TTTTGGCTTGGTTTTGGTAT+TGG | - | chr1.4:27566907-27566926 | MS.gene053402:CDS | 35.0% |
| AAGCAATTCGCAAAACGACA+TGG | - | chr1.4:27567369-27567388 | MS.gene053402:CDS | 40.0% | |
| AATTCGCAAAACGACATGGT+TGG | - | chr1.4:27567373-27567392 | MS.gene053402:CDS | 40.0% | |
| ACCAGTTGGATACCCTTTAT+CGG | + | chr1.4:27567925-27567944 | None:intergenic | 40.0% | |
| ACCATATGATCATTGGAGCA+AGG | - | chr1.4:27567683-27567702 | MS.gene053402:CDS | 40.0% | |
| ACTTGAAGTTGAAGAGGAGA+AGG | - | chr1.4:27567299-27567318 | MS.gene053402:CDS | 40.0% | |
| AGGTTAAGGTCTACTTGTCA+TGG | - | chr1.4:27567813-27567832 | MS.gene053402:CDS | 40.0% | |
| AGTGCTTAATGCACTTGATG+TGG | - | chr1.4:27566525-27566544 | MS.gene053402:CDS | 40.0% | |
| AGTGTTCAATCAGCTGTAAC+TGG | - | chr1.4:27566706-27566725 | MS.gene053402:CDS | 40.0% | |
| AGTGTTGCCATAACACTCTT+TGG | + | chr1.4:27566874-27566893 | None:intergenic | 40.0% | |
| ATCAAAGGGAAAATCGTTGG+AGG | - | chr1.4:27568022-27568041 | MS.gene053402:CDS | 40.0% | |
| ATCCTACCAAGACCGATAAA+GGG | - | chr1.4:27567910-27567929 | MS.gene053402:CDS | 40.0% | |
| ATTCGCAAAACGACATGGTT+GGG | - | chr1.4:27567374-27567393 | MS.gene053402:CDS | 40.0% | |
| CTAGCTGGCCAATTATTCTT+TGG | - | chr1.4:27566748-27566767 | MS.gene053402:CDS | 40.0% | |
| CTGGCCAATTATTCTTTGGT+TGG | - | chr1.4:27566752-27566771 | MS.gene053402:CDS | 40.0% | |
| GACATGATTGTAGCTGAAAG+AGG | + | chr1.4:27566943-27566962 | None:intergenic | 40.0% | |
| GCTCCAATGATCATATGGTA+TGG | + | chr1.4:27567682-27567701 | None:intergenic | 40.0% | |
| GGAATCAAAGGGAAAATCGT+TGG | - | chr1.4:27568019-27568038 | MS.gene053402:CDS | 40.0% | |
| GTTACAGCTGATTGAACACT+TGG | + | chr1.4:27566706-27566725 | None:intergenic | 40.0% | |
| TCCTTGCTCCAATGATCATA+TGG | + | chr1.4:27567687-27567706 | None:intergenic | 40.0% | |
| ! | AGATTTTTCCGGCTAGGTTA+AGG | - | chr1.4:27567799-27567818 | MS.gene053402:CDS | 40.0% |
| ! | CATTCATTTCTTTTGCCGGA+GGG | + | chr1.4:27567497-27567516 | None:intergenic | 40.0% |
| ! | CTTGGTGTGATCAACTTTGT+TGG | - | chr1.4:27567972-27567991 | MS.gene053402:CDS | 40.0% |
| ! | GCTGGATTTTCTTCAAAGGT+GGG | + | chr1.4:27567096-27567115 | None:intergenic | 40.0% |
| ! | TGCTGCTGGATTTTCTTCAA+AGG | + | chr1.4:27567100-27567119 | None:intergenic | 40.0% |
| ! | TGCTGGATTTTCTTCAAAGG+TGG | + | chr1.4:27567097-27567116 | None:intergenic | 40.0% |
| ! | TGTACCAGCAGAGATTTTTC+CGG | - | chr1.4:27567788-27567807 | MS.gene053402:CDS | 40.0% |
| ! | TGTTTGGAACATGCAGTACT+TGG | - | chr1.4:27567400-27567419 | MS.gene053402:CDS | 40.0% |
| !! | AAAGGGTATCCAACTGGTAT+TGG | - | chr1.4:27567927-27567946 | MS.gene053402:CDS | 40.0% |
| !! | AAGGGTATCCAACTGGTATT+GGG | - | chr1.4:27567928-27567947 | MS.gene053402:CDS | 40.0% |
| !! | CAAGGTTTTGGTATCTTAGG+TGG | - | chr1.4:27567018-27567037 | MS.gene053402:CDS | 40.0% |
| !! | GAATGAAGGAGAAAGTGTTG+AGG | - | chr1.4:27568058-27568077 | MS.gene053402:CDS | 40.0% |
| !!! | ACATTTTTAGCGCAATCGGA+TGG | - | chr1.4:27567469-27567488 | MS.gene053402:CDS | 40.0% |
| AAATCGTTGGAGGAGTTGAG+TGG | - | chr1.4:27568032-27568051 | MS.gene053402:CDS | 45.0% | |
| AATCTCAGCTGCTACAGGAA+AGG | - | chr1.4:27567836-27567855 | MS.gene053402:CDS | 45.0% | |
| ACAGCTGATTGAACACTTGG+TGG | + | chr1.4:27566703-27566722 | None:intergenic | 45.0% | |
| CAAGTAGACCTTAACCTAGC+CGG | + | chr1.4:27567810-27567829 | None:intergenic | 45.0% | |
| GAACCAAATCCAACAAGACC+AGG | - | chr1.4:27566670-27566689 | MS.gene053402:CDS | 45.0% | |
| GAGTTGAGTGGAGAGAATGA+AGG | - | chr1.4:27568044-27568063 | MS.gene053402:CDS | 45.0% | |
| GATCCTACCAAGACCGATAA+AGG | - | chr1.4:27567909-27567928 | MS.gene053402:CDS | 45.0% | |
| GGAGCAATTGTTGGTGCATT+TGG | - | chr1.4:27567861-27567880 | MS.gene053402:CDS | 45.0% | |
| TACCCTTTATCGGTCTTGGT+AGG | + | chr1.4:27567915-27567934 | None:intergenic | 45.0% | |
| TGGATACCCTTTATCGGTCT+TGG | + | chr1.4:27567919-27567938 | None:intergenic | 45.0% | |
| ! | GCATTCATTTCTTTTGCCGG+AGG | + | chr1.4:27567498-27567517 | None:intergenic | 45.0% |
| ! | GTTGCTTCAGGACTCTCTTT+TGG | - | chr1.4:27566841-27566860 | MS.gene053402:CDS | 45.0% |
| !! | ACCGATAAAGGGTATCCAAC+TGG | - | chr1.4:27567921-27567940 | MS.gene053402:CDS | 45.0% |
| !! | GGTTTTGGTATCTTAGGTGG+TGG | - | chr1.4:27567021-27567040 | MS.gene053402:CDS | 45.0% |
| !! | GTAACTGGTGTTGCACTTGT+TGG | - | chr1.4:27566721-27566740 | MS.gene053402:CDS | 45.0% |
| !! | GTGGTTTGTTCTGTTGCTTC+AGG | - | chr1.4:27566829-27566848 | MS.gene053402:CDS | 45.0% |
| !! | GTTCCTGGTCTTGTTGGATT+TGG | + | chr1.4:27566676-27566695 | None:intergenic | 45.0% |
| !!! | GCTGCTGTTTTTGCTATGCA+AGG | - | chr1.4:27567000-27567019 | MS.gene053402:CDS | 45.0% |
| !!! | TGGCTTGGTTTTGGTATTGG+TGG | - | chr1.4:27566910-27566929 | MS.gene053402:CDS | 45.0% |
| AGCTGCAGCGGATATGTCTA+AGG | - | chr1.4:27567263-27567282 | MS.gene053402:CDS | 50.0% | |
| CAGTAGTACGTCAATGCAGC+TGG | + | chr1.4:27567183-27567202 | None:intergenic | 50.0% | |
| CATGGAATCTCAGCTGCTAC+AGG | - | chr1.4:27567831-27567850 | MS.gene053402:CDS | 50.0% | |
| CTAGCCGGAAAAATCTCTGC+TGG | + | chr1.4:27567795-27567814 | None:intergenic | 50.0% | |
| GCCAGAAACAGCTCGTTACA+CGG | - | chr1.4:27567215-27567234 | MS.gene053402:CDS | 50.0% | |
| GCTACAGTGAACCAGTAACC+AGG | + | chr1.4:27567582-27567601 | None:intergenic | 50.0% | |
| GGAAAGGCAGGAGCAATTGT+TGG | - | chr1.4:27567852-27567871 | MS.gene053402:CDS | 50.0% | |
| GGCACTAACAATGATGCTGC+TGG | + | chr1.4:27567114-27567133 | None:intergenic | 50.0% | |
| GGTCACTCAGCAAGAAGGAT+CGG | - | chr1.4:27568079-27568098 | MS.gene053402:CDS | 50.0% | |
| GTCACTCAGCAAGAAGGATC+GGG | - | chr1.4:27568080-27568099 | MS.gene053402:CDS | 50.0% | |
| GTTGAGGTCACTCAGCAAGA+AGG | - | chr1.4:27568074-27568093 | MS.gene053402:CDS | 50.0% | |
| TCACTCAGCAAGAAGGATCG+GGG | - | chr1.4:27568081-27568100 | MS.gene053402:CDS | 50.0% | |
| ! | CAGCAGAGATTTTTCCGGCT+AGG | - | chr1.4:27567793-27567812 | MS.gene053402:CDS | 50.0% |
| ! | CAGCTGCATTGACGTACTAC+TGG | - | chr1.4:27567181-27567200 | MS.gene053402:CDS | 50.0% |
| ! | GCACTTGTTGGAACACTAGC+TGG | - | chr1.4:27566733-27566752 | MS.gene053402:CDS | 50.0% |
| !! | ACACTTGGTGGAAGTGTTCC+TGG | + | chr1.4:27566691-27566710 | None:intergenic | 50.0% |
| !! | CGACATGGTTGGGCTTTGTT+TGG | - | chr1.4:27567384-27567403 | MS.gene053402:CDS | 50.0% |
| !! | GGAAGTGTTCCTGGTCTTGT+TGG | + | chr1.4:27566682-27566701 | None:intergenic | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | - | chr1.4:27566769-27566788 | MS.gene053402:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | - | chr1.4:27566768-27566787 | MS.gene053402:CDS | 50.0% |
| CACTCAGCAAGAAGGATCGG+GGG | - | chr1.4:27568082-27568101 | MS.gene053402:CDS | 55.0% | |
| GAACGCGAAACAAGCTGCAG+CGG | - | chr1.4:27567251-27567270 | MS.gene053402:CDS | 55.0% | |
| GCAGCACTGTTCCTGGTTAC+TGG | - | chr1.4:27567568-27567587 | MS.gene053402:CDS | 55.0% | |
| TCAGCTGCTACAGGAAAGGC+AGG | - | chr1.4:27567840-27567859 | MS.gene053402:CDS | 55.0% | |
| ! | GCCGTGTAACGAGCTGTTTC+TGG | + | chr1.4:27567219-27567238 | None:intergenic | 55.0% |
| CGCAATCGGATGGATCCCTC+CGG | - | chr1.4:27567479-27567498 | MS.gene053402:CDS | 60.0% | |
| GCGTTGTGCAGCACTGTTCC+TGG | - | chr1.4:27567561-27567580 | MS.gene053402:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 27566508 | 27568109 | 27566508 | ID=MS.gene053402 |
| chr1.4 | mRNA | 27566508 | 27568109 | 27566508 | ID=MS.gene053402.t1;Parent=MS.gene053402 |
| chr1.4 | exon | 27566508 | 27568109 | 27566508 | ID=MS.gene053402.t1.exon1;Parent=MS.gene053402.t1 |
| chr1.4 | CDS | 27566508 | 27568109 | 27566508 | ID=cds.MS.gene053402.t1;Parent=MS.gene053402.t1 |
| Gene Sequence |
| Protein sequence |
