Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65499.t1 | XP_003590040.1 | 99.1 | 322 | 3 | 0 | 1 | 322 | 1 | 322 | 2.50E-190 | 674.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65499.t1 | P48489 | 83.3 | 299 | 49 | 1 | 1 | 298 | 15 | 313 | 1.1e-154 | 547.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65499.t1 | G7I5D1 | 99.1 | 322 | 3 | 0 | 1 | 322 | 1 | 322 | 1.8e-190 | 674.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053405 | MS.gene65499 | 0.89953 | 1.81E-77 | -1.69E-46 |
| MS.gene054379 | MS.gene65499 | 0.804259 | 2.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65499.t1 | MTR_1g043240 | 99.068 | 322 | 3 | 0 | 1 | 322 | 1 | 322 | 0.0 | 663 |
| MS.gene65499.t1 | MTR_1g074880 | 82.569 | 327 | 48 | 2 | 1 | 319 | 1 | 326 | 0.0 | 570 |
| MS.gene65499.t1 | MTR_1g079950 | 81.651 | 327 | 51 | 2 | 1 | 319 | 30 | 355 | 0.0 | 566 |
| MS.gene65499.t1 | MTR_1g079950 | 81.651 | 327 | 51 | 2 | 1 | 319 | 1 | 326 | 0.0 | 565 |
| MS.gene65499.t1 | MTR_1g074880 | 84.345 | 313 | 48 | 1 | 1 | 313 | 1 | 312 | 0.0 | 563 |
| MS.gene65499.t1 | MTR_1g079950 | 81.931 | 321 | 57 | 1 | 1 | 321 | 1 | 320 | 0.0 | 563 |
| MS.gene65499.t1 | MTR_1g079950 | 81.931 | 321 | 57 | 1 | 1 | 321 | 1 | 320 | 0.0 | 561 |
| MS.gene65499.t1 | MTR_7g116380 | 82.263 | 327 | 49 | 2 | 1 | 319 | 1 | 326 | 0.0 | 560 |
| MS.gene65499.t1 | MTR_7g116380 | 82.243 | 321 | 56 | 1 | 1 | 321 | 1 | 320 | 0.0 | 555 |
| MS.gene65499.t1 | MTR_5g081230 | 83.278 | 299 | 49 | 1 | 1 | 298 | 17 | 315 | 0.0 | 529 |
| MS.gene65499.t1 | MTR_8g098980 | 75.161 | 310 | 75 | 2 | 1 | 309 | 1 | 309 | 9.32e-180 | 499 |
| MS.gene65499.t1 | MTR_8g005010 | 75.517 | 290 | 71 | 0 | 6 | 295 | 4 | 293 | 4.02e-173 | 482 |
| MS.gene65499.t1 | MTR_1g074880 | 82.156 | 269 | 39 | 2 | 59 | 319 | 4 | 271 | 2.18e-168 | 469 |
| MS.gene65499.t1 | MTR_1g079950 | 82.443 | 262 | 45 | 1 | 60 | 321 | 34 | 294 | 8.62e-168 | 469 |
| MS.gene65499.t1 | MTR_7g112870 | 71.661 | 307 | 82 | 2 | 1 | 307 | 5 | 306 | 2.39e-167 | 468 |
| MS.gene65499.t1 | MTR_1g074880 | 84.314 | 255 | 39 | 1 | 59 | 313 | 4 | 257 | 3.56e-166 | 463 |
| MS.gene65499.t1 | MTR_5g093990 | 48.134 | 268 | 138 | 1 | 26 | 292 | 17 | 284 | 1.26e-93 | 280 |
| MS.gene65499.t1 | MTR_7g107310 | 47.232 | 271 | 141 | 2 | 26 | 295 | 27 | 296 | 7.43e-92 | 276 |
| MS.gene65499.t1 | MTR_8g062430 | 45.455 | 286 | 154 | 2 | 26 | 310 | 20 | 304 | 9.16e-92 | 276 |
| MS.gene65499.t1 | MTR_5g037200 | 45.455 | 286 | 154 | 2 | 26 | 310 | 20 | 304 | 2.03e-90 | 272 |
| MS.gene65499.t1 | MTR_8g085610 | 46.125 | 271 | 144 | 2 | 26 | 295 | 22 | 291 | 4.08e-89 | 269 |
| MS.gene65499.t1 | MTR_8g085610 | 44.815 | 270 | 147 | 2 | 30 | 298 | 2 | 270 | 2.30e-87 | 264 |
| MS.gene65499.t1 | MTR_1g039380 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 9.57e-87 | 263 |
| MS.gene65499.t1 | MTR_1g039380 | 44.980 | 249 | 134 | 3 | 39 | 285 | 5 | 252 | 2.85e-84 | 256 |
| MS.gene65499.t1 | MTR_2g087530 | 46.405 | 306 | 143 | 9 | 9 | 295 | 644 | 947 | 4.06e-80 | 262 |
| MS.gene65499.t1 | MTR_1g089370 | 47.143 | 280 | 134 | 5 | 30 | 295 | 552 | 831 | 6.46e-80 | 260 |
| MS.gene65499.t1 | MTR_2g087530 | 46.230 | 305 | 145 | 8 | 9 | 295 | 531 | 834 | 6.69e-78 | 255 |
| MS.gene65499.t1 | MTR_4g050540 | 46.230 | 305 | 145 | 8 | 9 | 295 | 649 | 952 | 1.45e-77 | 255 |
| MS.gene65499.t1 | MTR_3g452710 | 42.292 | 253 | 139 | 4 | 33 | 279 | 195 | 446 | 1.40e-67 | 219 |
| MS.gene65499.t1 | MTR_3g452710 | 42.292 | 253 | 139 | 4 | 33 | 279 | 262 | 513 | 5.94e-67 | 219 |
| MS.gene65499.t1 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 102 | 365 | 9.68e-64 | 207 |
| MS.gene65499.t1 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 172 | 435 | 7.50e-63 | 206 |
| MS.gene65499.t1 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 211 | 474 | 1.26e-62 | 207 |
| MS.gene65499.t1 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 201 | 464 | 1.34e-62 | 206 |
| MS.gene65499.t1 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 211 | 474 | 1.56e-62 | 207 |
| MS.gene65499.t1 | MTR_2g100130 | 38.014 | 292 | 161 | 7 | 22 | 295 | 172 | 461 | 1.77e-61 | 203 |
| MS.gene65499.t1 | MTR_2g100130 | 40.000 | 265 | 150 | 6 | 22 | 279 | 211 | 473 | 2.94e-61 | 203 |
| MS.gene65499.t1 | MTR_2g100130 | 40.392 | 255 | 144 | 5 | 22 | 269 | 211 | 464 | 6.99e-61 | 202 |
| MS.gene65499.t1 | MTR_2g100160 | 41.532 | 248 | 137 | 5 | 39 | 279 | 138 | 384 | 1.16e-56 | 189 |
| MS.gene65499.t1 | MTR_5g037200 | 50.299 | 167 | 82 | 1 | 26 | 191 | 20 | 186 | 2.34e-56 | 182 |
| MS.gene65499.t1 | MTR_8g072600 | 31.897 | 348 | 158 | 12 | 33 | 313 | 100 | 435 | 1.45e-40 | 147 |
| MS.gene65499.t1 | MTR_8g072600 | 33.468 | 248 | 119 | 7 | 33 | 235 | 100 | 346 | 1.31e-32 | 124 |
| MS.gene65499.t1 | MTR_2g099710 | 30.408 | 319 | 162 | 14 | 31 | 313 | 211 | 505 | 1.46e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65499.t1 | AT2G39840 | 81.940 | 299 | 53 | 1 | 1 | 298 | 14 | 312 | 0.0 | 530 |
| MS.gene65499.t1 | AT2G29400 | 80.858 | 303 | 54 | 3 | 1 | 300 | 15 | 316 | 0.0 | 520 |
| MS.gene65499.t1 | AT5G59160 | 79.934 | 304 | 58 | 3 | 1 | 302 | 9 | 311 | 0.0 | 517 |
| MS.gene65499.t1 | AT5G59160 | 79.934 | 304 | 58 | 3 | 1 | 302 | 9 | 311 | 0.0 | 517 |
| MS.gene65499.t1 | AT5G59160 | 79.934 | 304 | 58 | 3 | 1 | 302 | 9 | 311 | 0.0 | 517 |
| MS.gene65499.t1 | AT5G43380 | 75.701 | 321 | 77 | 1 | 1 | 321 | 1 | 320 | 0.0 | 511 |
| MS.gene65499.t1 | AT5G43380 | 75.701 | 321 | 77 | 1 | 1 | 321 | 1 | 320 | 0.0 | 510 |
| MS.gene65499.t1 | AT5G43380 | 75.938 | 320 | 76 | 1 | 1 | 320 | 1 | 319 | 0.0 | 509 |
| MS.gene65499.t1 | AT3G46820 | 78.667 | 300 | 62 | 1 | 1 | 298 | 9 | 308 | 0.0 | 507 |
| MS.gene65499.t1 | AT1G64040 | 77.705 | 305 | 66 | 2 | 1 | 304 | 1 | 304 | 0.0 | 507 |
| MS.gene65499.t1 | AT4G11240 | 72.492 | 309 | 83 | 2 | 1 | 308 | 1 | 308 | 4.49e-174 | 485 |
| MS.gene65499.t1 | AT5G27840 | 71.290 | 310 | 80 | 2 | 1 | 303 | 9 | 316 | 4.97e-168 | 470 |
| MS.gene65499.t1 | AT3G05580 | 72.581 | 310 | 76 | 2 | 1 | 303 | 9 | 316 | 7.71e-168 | 469 |
| MS.gene65499.t1 | AT5G27840 | 71.429 | 308 | 82 | 2 | 1 | 304 | 9 | 314 | 1.01e-167 | 469 |
| MS.gene65499.t1 | AT5G27840 | 73.559 | 295 | 76 | 1 | 1 | 295 | 9 | 301 | 1.73e-167 | 469 |
| MS.gene65499.t1 | AT5G27840 | 73.559 | 295 | 76 | 1 | 1 | 295 | 9 | 301 | 1.73e-167 | 469 |
| MS.gene65499.t1 | AT3G05580 | 73.577 | 246 | 63 | 1 | 1 | 246 | 9 | 252 | 1.82e-134 | 382 |
| MS.gene65499.t1 | AT5G55260 | 48.507 | 268 | 137 | 1 | 26 | 292 | 17 | 284 | 4.13e-96 | 287 |
| MS.gene65499.t1 | AT4G26720 | 46.269 | 268 | 143 | 1 | 26 | 292 | 17 | 284 | 9.74e-94 | 281 |
| MS.gene65499.t1 | AT2G42500 | 47.080 | 274 | 143 | 2 | 26 | 298 | 27 | 299 | 2.40e-93 | 280 |
| MS.gene65499.t1 | AT3G58500 | 46.350 | 274 | 145 | 2 | 26 | 298 | 27 | 299 | 1.11e-91 | 276 |
| MS.gene65499.t1 | AT1G10430 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 1.05e-90 | 273 |
| MS.gene65499.t1 | AT1G10430 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 1.05e-90 | 273 |
| MS.gene65499.t1 | AT1G69960 | 45.105 | 286 | 155 | 2 | 26 | 310 | 21 | 305 | 2.30e-90 | 272 |
| MS.gene65499.t1 | AT1G59830 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 7.35e-90 | 271 |
| MS.gene65499.t1 | AT5G55260 | 42.071 | 309 | 137 | 2 | 26 | 292 | 17 | 325 | 1.52e-87 | 266 |
| MS.gene65499.t1 | AT3G19980 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 2.29e-86 | 262 |
| MS.gene65499.t1 | AT1G50370 | 44.106 | 263 | 144 | 3 | 25 | 285 | 15 | 276 | 3.54e-86 | 261 |
| MS.gene65499.t1 | AT4G03080 | 47.143 | 280 | 134 | 5 | 30 | 295 | 554 | 833 | 5.16e-80 | 260 |
| MS.gene65499.t1 | AT2G27210 | 45.902 | 305 | 146 | 8 | 9 | 295 | 650 | 953 | 4.88e-79 | 259 |
| MS.gene65499.t1 | AT2G27210 | 45.902 | 305 | 146 | 8 | 9 | 295 | 655 | 958 | 5.14e-79 | 259 |
| MS.gene65499.t1 | AT1G08420 | 46.230 | 305 | 145 | 8 | 9 | 295 | 661 | 964 | 9.27e-79 | 259 |
| MS.gene65499.t1 | AT1G08420 | 46.230 | 305 | 145 | 8 | 9 | 295 | 666 | 969 | 9.74e-79 | 259 |
| MS.gene65499.t1 | AT1G59830 | 48.908 | 229 | 115 | 2 | 26 | 253 | 20 | 247 | 3.05e-78 | 239 |
| MS.gene65499.t1 | AT2G42500 | 48.416 | 221 | 112 | 2 | 79 | 298 | 33 | 252 | 1.43e-74 | 230 |
| MS.gene65499.t1 | AT1G03445 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 2.07e-73 | 241 |
| MS.gene65499.t1 | AT1G03445 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 2.19e-73 | 241 |
| MS.gene65499.t1 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 4.46e-66 | 215 |
| MS.gene65499.t1 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 4.46e-66 | 215 |
| MS.gene65499.t1 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 4.46e-66 | 215 |
| MS.gene65499.t1 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 251 | 502 | 1.15e-65 | 216 |
| MS.gene65499.t1 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 250 | 501 | 1.34e-65 | 215 |
| MS.gene65499.t1 | AT2G42500 | 46.939 | 147 | 74 | 3 | 26 | 168 | 27 | 173 | 8.97e-43 | 146 |
| MS.gene65499.t1 | AT2G42500 | 46.104 | 154 | 77 | 4 | 26 | 175 | 27 | 178 | 2.93e-42 | 144 |
| MS.gene65499.t1 | AT2G42500 | 48.921 | 139 | 67 | 3 | 26 | 160 | 27 | 165 | 5.31e-42 | 144 |
| MS.gene65499.t1 | AT5G63870 | 30.205 | 341 | 170 | 13 | 33 | 306 | 52 | 391 | 3.72e-35 | 132 |
| MS.gene65499.t1 | AT5G63870 | 30.205 | 341 | 170 | 13 | 33 | 306 | 52 | 391 | 3.72e-35 | 132 |
| MS.gene65499.t1 | AT1G48120 | 30.872 | 298 | 146 | 6 | 31 | 268 | 628 | 925 | 1.73e-28 | 116 |
| MS.gene65499.t1 | AT5G63870 | 31.474 | 251 | 130 | 9 | 33 | 242 | 52 | 301 | 4.26e-28 | 110 |
| MS.gene65499.t1 | AT5G10900 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 2.28e-21 | 95.1 |
| MS.gene65499.t1 | AT5G10900 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 2.50e-21 | 95.1 |
| MS.gene65499.t1 | AT5G10900 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 2.81e-21 | 94.7 |
Find 65 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTCCAACTACTTGTTCTT+AGG | 0.194579 | 1.3:+25886661 | MS.gene65499:CDS |
| GAATCCGTAGACACGATTTA+TGG | 0.247644 | 1.3:-25886797 | None:intergenic |
| TAGTTACCACATATCTTAAT+TGG | 0.282650 | 1.3:-25884983 | None:intergenic |
| TGTTTCAAACTATGCAATTC+AGG | 0.295203 | 1.3:-25886943 | None:intergenic |
| TCAAACTCTCCACAGTAATT+AGG | 0.300714 | 1.3:-25887905 | None:intergenic |
| CATGCTCAAATAGGCTTAAT+AGG | 0.316064 | 1.3:-25886624 | None:intergenic |
| CTTGAAGCAGCCTAATTTGT+TGG | 0.324778 | 1.3:+25884949 | MS.gene65499:CDS |
| TCACATAAAAGACCAGTTTC+AGG | 0.342012 | 1.3:-25886997 | None:intergenic |
| CGTGGTGTTTCATTTACTTT+TGG | 0.343305 | 1.3:+25887072 | MS.gene65499:CDS |
| GATCATAAAATGCCTAAGTT+TGG | 0.343821 | 1.3:+25887995 | MS.gene65499:CDS |
| ATTCATGGTTTCCTCGTAGA+AGG | 0.349139 | 1.3:-25886768 | None:intergenic |
| GGAATCCACCATGCTCAAAT+AGG | 0.355827 | 1.3:-25886633 | None:intergenic |
| CTTGATTTGTAGAGCTCATC+AGG | 0.356629 | 1.3:+25887137 | MS.gene65499:CDS |
| TTCTTGATGGTATCATTAAT+AGG | 0.371158 | 1.3:+25884837 | MS.gene65499:CDS |
| GCCTCAAGTTCCAACAAATT+AGG | 0.376724 | 1.3:-25884959 | None:intergenic |
| CCAAGTGAAGTTCCTGAAAC+TGG | 0.383450 | 1.3:+25886985 | MS.gene65499:CDS |
| TTTCTATAGGTTGTTGAAGA+TGG | 0.384025 | 1.3:+25887836 | MS.gene65499:intron |
| AGATTGTTTCAACTGTTTGC+CGG | 0.384374 | 1.3:+25886870 | MS.gene65499:CDS |
| AATAGGTTGCTTGATGTTAG+AGG | 0.400822 | 1.3:+25884854 | MS.gene65499:CDS |
| GGACCGTGGAAAACAAAGTT+TGG | 0.405620 | 1.3:+25886693 | MS.gene65499:CDS |
| TCAGGAACTTCACTTGGCCT+TGG | 0.409043 | 1.3:-25886979 | None:intergenic |
| TAGAGGAAGACCTGGGAAAC+AGG | 0.412490 | 1.3:+25884871 | MS.gene65499:CDS |
| TAGTAAAGATGTTCATGGTT+GGG | 0.413408 | 1.3:+25887038 | MS.gene65499:CDS |
| CCAGTTTCAGGAACTTCACT+TGG | 0.414690 | 1.3:-25886985 | None:intergenic |
| GATTTATGGAAGCACATTCA+TGG | 0.419448 | 1.3:-25886783 | None:intergenic |
| GCAAGAGGAGATTCAATGTA+AGG | 0.431969 | 1.3:+25886830 | MS.gene65499:CDS |
| ATGGAACGAAGGGTTCTTGA+TGG | 0.433784 | 1.3:+25884824 | MS.gene65499:CDS |
| TAGGAGCACAACTTCATTCA+AGG | 0.442692 | 1.3:+25888021 | MS.gene65499:CDS |
| GGAGATTCAATGTAAGGGTA+TGG | 0.442978 | 1.3:+25886836 | MS.gene65499:CDS |
| GATCCTAGTAAAGATGTTCA+TGG | 0.464856 | 1.3:+25887033 | MS.gene65499:CDS |
| TTTCAACTGTTTGCCGGTCG+CGG | 0.466909 | 1.3:+25886876 | MS.gene65499:CDS |
| CAACCATGAACATCTTTACT+AGG | 0.473905 | 1.3:-25887036 | None:intergenic |
| TGTGGAGAGTTTGACAATGC+TGG | 0.482312 | 1.3:+25887914 | MS.gene65499:CDS |
| GCCTAATTTGTTGGAACTTG+AGG | 0.482437 | 1.3:+25884958 | MS.gene65499:CDS |
| GAAAGCTGAACCTGTTTCCC+AGG | 0.504004 | 1.3:-25884881 | None:intergenic |
| AGTAAAGATGTTCATGGTTG+GGG | 0.513074 | 1.3:+25887039 | MS.gene65499:CDS |
| GTCACCTAAGAACAAGTAGT+TGG | 0.527172 | 1.3:-25886665 | None:intergenic |
| CTAGTAAAGATGTTCATGGT+TGG | 0.530691 | 1.3:+25887037 | MS.gene65499:CDS |
| TTTCTTGATTATGGAACGAA+GGG | 0.547346 | 1.3:+25884814 | None:intergenic |
| TCATCGATGATAGCCGCGAC+CGG | 0.549911 | 1.3:-25886889 | None:intergenic |
| CTTTCTTGATTATGGAACGA+AGG | 0.562095 | 1.3:+25884813 | None:intergenic |
| AACAGATAAGTAATTTGCCA+AGG | 0.564405 | 1.3:+25886962 | MS.gene65499:CDS |
| CTTGATGTTAGAGGAAGACC+TGG | 0.565129 | 1.3:+25884863 | MS.gene65499:CDS |
| GCTTCCATAAATCGTGTCTA+CGG | 0.568604 | 1.3:+25886793 | MS.gene65499:CDS |
| GTGCTCCTAAAACCAAACTT+AGG | 0.573212 | 1.3:-25888007 | None:intergenic |
| GTGGAGAGTTTGACAATGCT+GGG | 0.589015 | 1.3:+25887915 | MS.gene65499:CDS |
| CAAGAGGAGATTCAATGTAA+GGG | 0.594417 | 1.3:+25886831 | MS.gene65499:CDS |
| CTTGTTCTTAGGTGACTATG+TGG | 0.595503 | 1.3:+25886672 | MS.gene65499:CDS |
| AAACAGGTTCAGCTTTCAGA+GGG | 0.596976 | 1.3:+25884887 | MS.gene65499:CDS |
| AGATTCAAGAGTTTCTTCAA+AGG | 0.599855 | 1.3:+25887103 | MS.gene65499:CDS |
| CTATTAAGCCTATTTGAGCA+TGG | 0.607320 | 1.3:+25886625 | MS.gene65499:CDS |
| GAGGCACCAATTAAGATATG+TGG | 0.612070 | 1.3:+25884977 | MS.gene65499:CDS |
| AGAAATCAAGCAGCTTTGTG+TGG | 0.618536 | 1.3:+25884910 | MS.gene65499:CDS |
| GAAACAGGTTCAGCTTTCAG+AGG | 0.619149 | 1.3:+25884886 | MS.gene65499:CDS |
| TTAAGCCTATTTGAGCATGG+TGG | 0.624084 | 1.3:+25886628 | MS.gene65499:CDS |
| GAAAAGATTATATGTATGCA+TGG | 0.633670 | 1.3:+25886910 | MS.gene65499:CDS |
| GATTCTACGACGAATGCAAG+AGG | 0.633685 | 1.3:+25886815 | MS.gene65499:CDS |
| ACAAGTAGTTGGAACGTGGA+GGG | 0.641155 | 1.3:-25886654 | None:intergenic |
| AACAAGTAGTTGGAACGTGG+AGG | 0.651695 | 1.3:-25886655 | None:intergenic |
| AAGAACAAGTAGTTGGAACG+TGG | 0.682620 | 1.3:-25886658 | None:intergenic |
| TTAGGTGACTATGTGGACCG+TGG | 0.683185 | 1.3:+25886679 | MS.gene65499:CDS |
| AAGATTATATGTATGCATGG+TGG | 0.692863 | 1.3:+25886913 | MS.gene65499:CDS |
| GGTTGGGGTGTTAATGAACG+TGG | 0.714430 | 1.3:+25887054 | MS.gene65499:CDS |
| TGGAGAGTTTGACAATGCTG+GGG | 0.744427 | 1.3:+25887916 | MS.gene65499:CDS |
| TTGATGTTAGAGGAAGACCT+GGG | 0.755374 | 1.3:+25884864 | MS.gene65499:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTAATAGTTT+AGG | + | chr1.3:25885764-25885783 | MS.gene65499:intron | 10.0% |
| !! | AAAACAAGAATTATTAAAAT+TGG | + | chr1.3:25888910-25888929 | MS.gene65499:intron | 10.0% |
| !! | AAACAAGAATTATTAAAATT+GGG | + | chr1.3:25888911-25888930 | MS.gene65499:intron | 10.0% |
| !! | ATGAGTATTTAAAAAAATTA+AGG | + | chr1.3:25887703-25887722 | MS.gene65499:intron | 10.0% |
| !!! | AAAATTACTTTTTTTATTCA+AGG | + | chr1.3:25887643-25887662 | MS.gene65499:intron | 10.0% |
| !!! | AAGAATTCTTTTTTTTTTTT+TGG | - | chr1.3:25886515-25886534 | None:intergenic | 10.0% |
| !! | AAAAAAGAAAAAAGAAAATG+AGG | - | chr1.3:25885017-25885036 | None:intergenic | 15.0% |
| !! | AAATGAAACTAAATTTAACA+AGG | - | chr1.3:25886128-25886147 | None:intergenic | 15.0% |
| !! | AAATTATACATAACATAACA+TGG | + | chr1.3:25888388-25888407 | MS.gene65499:intron | 15.0% |
| !! | AATGAAACACAATAAAATAT+AGG | - | chr1.3:25889157-25889176 | None:intergenic | 15.0% |
| !! | ATATACTTAATGTACTAATT+TGG | + | chr1.3:25889092-25889111 | MS.gene65499:intron | 15.0% |
| !! | TTAAGTTTATGAATACAAAT+GGG | + | chr1.3:25888430-25888449 | MS.gene65499:intron | 15.0% |
| !!! | AAGTCGTTTTATATATTTTA+AGG | + | chr1.3:25885690-25885709 | MS.gene65499:intron | 15.0% |
| !!! | ACAAAATTTTTCTCAAATTT+AGG | - | chr1.3:25887239-25887258 | None:intergenic | 15.0% |
| !!! | CAAAATTTTTCTCAAATTTA+GGG | - | chr1.3:25887238-25887257 | None:intergenic | 15.0% |
| !!! | CTTTTTATTTTATTTTCAGA+AGG | + | chr1.3:25889256-25889275 | MS.gene65499:intron | 15.0% |
| !!! | TGCTTATTATTATAACTTTT+TGG | - | chr1.3:25888961-25888980 | None:intergenic | 15.0% |
| !!! | TTAAAGTTTATGTTCATTTT+TGG | + | chr1.3:25885928-25885947 | MS.gene65499:intron | 15.0% |
| !! | AAATACTAAGAAAACCTTAA+TGG | + | chr1.3:25888864-25888883 | MS.gene65499:intron | 20.0% |
| !! | AATAGTGTAAGTTTGATATT+TGG | - | chr1.3:25888992-25889011 | None:intergenic | 20.0% |
| !! | AATGATATGAAACTTAAGTA+AGG | - | chr1.3:25888544-25888563 | None:intergenic | 20.0% |
| !! | ACTCATATTTAATGATTAGT+GGG | - | chr1.3:25885389-25885408 | None:intergenic | 20.0% |
| !! | ATAAATGAAATCTGCAAATT+TGG | + | chr1.3:25885590-25885609 | MS.gene65499:intron | 20.0% |
| !! | ATGATATGAAACTTAAGTAA+GGG | - | chr1.3:25888543-25888562 | None:intergenic | 20.0% |
| !! | CAATTTATGAGCTAAATTAA+TGG | - | chr1.3:25885519-25885538 | None:intergenic | 20.0% |
| !! | CTTAAGTTTATGAATACAAA+TGG | + | chr1.3:25888429-25888448 | MS.gene65499:intron | 20.0% |
| !! | GGAACTAAAAACATATTTAA+CGG | - | chr1.3:25887184-25887203 | None:intergenic | 20.0% |
| !!! | AGCAATTAGAATAATGTTTT+TGG | + | chr1.3:25888101-25888120 | MS.gene65499:intron | 20.0% |
| !!! | ATCAAATTTTGTTACATTCA+AGG | + | chr1.3:25885126-25885145 | MS.gene65499:intron | 20.0% |
| !!! | ATTATATTTTTGGAAAACAG+AGG | - | chr1.3:25886151-25886170 | None:intergenic | 20.0% |
| !!! | ATTTTTGGTCTAATTGAAAT+TGG | + | chr1.3:25885943-25885962 | MS.gene65499:intron | 20.0% |
| !!! | CTAAAAATGATAACACATTT+TGG | - | chr1.3:25888637-25888656 | None:intergenic | 20.0% |
| !!! | CTTTGATGTTTTTTTCATTT+TGG | + | chr1.3:25888485-25888504 | MS.gene65499:intron | 20.0% |
| !!! | TATTTTCTGTTTTAGATTTC+CGG | - | chr1.3:25888891-25888910 | None:intergenic | 20.0% |
| !!! | TATTTTTTTCTTAAAGGGAA+AGG | + | chr1.3:25886232-25886251 | MS.gene65499:intron | 20.0% |
| !!! | TCAAATTTTGTTACATTCAA+GGG | + | chr1.3:25885127-25885146 | MS.gene65499:intron | 20.0% |
| !!! | TGAAATATCAATATTTCTGT+TGG | - | chr1.3:25888055-25888074 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTCATTTTGGTTT+TGG | + | chr1.3:25888491-25888510 | MS.gene65499:intron | 20.0% |
| !!! | TTCACTATGTTATTATTTTC+AGG | + | chr1.3:25886577-25886596 | MS.gene65499:intron | 20.0% |
| !!! | TTTTAGTCAATTTAAGTGTA+TGG | + | chr1.3:25885060-25885079 | MS.gene65499:intron | 20.0% |
| !!! | TTTTCAAAATGACAATGTTA+AGG | - | chr1.3:25888355-25888374 | None:intergenic | 20.0% |
| ! | AAAAACCACATAGAAAAACA+TGG | - | chr1.3:25885086-25885105 | None:intergenic | 25.0% |
| ! | AAAAGAGATTATGTCTAATG+AGG | - | chr1.3:25886377-25886396 | None:intergenic | 25.0% |
| ! | AATTCTTGTCTACTAAAACA+AGG | + | chr1.3:25886528-25886547 | MS.gene65499:intron | 25.0% |
| ! | ACGAAGTAAATTAGAAAGAA+AGG | + | chr1.3:25885738-25885757 | MS.gene65499:intron | 25.0% |
| ! | ACTTAGTCCTTGAAAAAAAT+CGG | + | chr1.3:25887534-25887553 | MS.gene65499:intron | 25.0% |
| ! | ATCCAAAATCTTAACTCTTA+AGG | - | chr1.3:25887409-25887428 | None:intergenic | 25.0% |
| ! | CATGAAAAAATTGGATCTTA+CGG | - | chr1.3:25887570-25887589 | None:intergenic | 25.0% |
| ! | GAAAAGATTATATGTATGCA+TGG | + | chr1.3:25886910-25886929 | MS.gene65499:CDS | 25.0% |
| ! | GAAATTTATGAAAGTGATGT+AGG | - | chr1.3:25889071-25889090 | None:intergenic | 25.0% |
| ! | GACTCATATTTAATGATTAG+TGG | - | chr1.3:25885390-25885409 | None:intergenic | 25.0% |
| ! | GGGAAAAAGAATAATGTTTA+AGG | + | chr1.3:25888450-25888469 | MS.gene65499:intron | 25.0% |
| ! | TAGAGTAGACATGAAAAAAT+TGG | - | chr1.3:25887579-25887598 | None:intergenic | 25.0% |
| ! | TAGTTACCACATATCTTAAT+TGG | - | chr1.3:25884986-25885005 | None:intergenic | 25.0% |
| ! | TCGAAGTTTCATGATTATAT+AGG | - | chr1.3:25887205-25887224 | None:intergenic | 25.0% |
| !! | CAAATTTTGTTACATTCAAG+GGG | + | chr1.3:25885128-25885147 | MS.gene65499:intron | 25.0% |
| !! | TGTTTGAAACTTCTGATTAT+TGG | - | chr1.3:25885423-25885442 | None:intergenic | 25.0% |
| !! | TTAAGAGTTAAGATTTTGGA+TGG | + | chr1.3:25887408-25887427 | MS.gene65499:intron | 25.0% |
| !! | TTCTTGATGGTATCATTAAT+AGG | + | chr1.3:25884837-25884856 | MS.gene65499:CDS | 25.0% |
| !! | TTTTATTCAAGGACCAAATT+AGG | + | chr1.3:25887654-25887673 | MS.gene65499:intron | 25.0% |
| !! | TTTTCAGATATTAAAACCTG+TGG | + | chr1.3:25887973-25887992 | MS.gene65499:CDS | 25.0% |
| !!! | AGAATTTTTTCAAATTCTGG+TGG | - | chr1.3:25888792-25888811 | None:intergenic | 25.0% |
| !!! | CAGAGAATTTTTTCAAATTC+TGG | - | chr1.3:25888795-25888814 | None:intergenic | 25.0% |
| !!! | TCTTGTGTTTTGTTTTCTAT+AGG | + | chr1.3:25887823-25887842 | MS.gene65499:intron | 25.0% |
| !!! | TTATTTTCAGGAGATATTCA+TGG | + | chr1.3:25886589-25886608 | MS.gene65499:intron | 25.0% |
| !!! | TTCAGGGTATTTTATTTTGT+AGG | - | chr1.3:25886740-25886759 | None:intergenic | 25.0% |
| !!! | TTTAACTTTTTTCAGAAGCA+CGG | + | chr1.3:25885850-25885869 | MS.gene65499:intron | 25.0% |
| !!! | TTTTGTTTTGACTTGAGTAT+TGG | + | chr1.3:25886393-25886412 | MS.gene65499:intron | 25.0% |
| !!! | TTTTTTCATGTCTACTCTAT+AGG | + | chr1.3:25887580-25887599 | MS.gene65499:intron | 25.0% |
| AAAATGACAATGTTAAGGTC+AGG | - | chr1.3:25888350-25888369 | None:intergenic | 30.0% | |
| AAAATTAGCGACACCTAATT+TGG | - | chr1.3:25887670-25887689 | None:intergenic | 30.0% | |
| AACCTTATTAAAGCAACCTA+TGG | + | chr1.3:25886036-25886055 | MS.gene65499:intron | 30.0% | |
| AAGATTATATGTATGCATGG+TGG | + | chr1.3:25886913-25886932 | MS.gene65499:CDS | 30.0% | |
| AATCAAAATTGAACCCAACA+TGG | - | chr1.3:25887315-25887334 | None:intergenic | 30.0% | |
| AGATTCAAGAGTTTCTTCAA+AGG | + | chr1.3:25887103-25887122 | MS.gene65499:CDS | 30.0% | |
| ATTCAGTGTGTTATAACTAG+TGG | + | chr1.3:25886075-25886094 | MS.gene65499:intron | 30.0% | |
| ATTCTTGGATTATCCTTAGT+CGG | + | chr1.3:25888682-25888701 | MS.gene65499:intron | 30.0% | |
| CATAGTACATAGATTTGAGT+AGG | + | chr1.3:25888585-25888604 | MS.gene65499:intron | 30.0% | |
| CGATACTAATCATTAGATGA+TGG | - | chr1.3:25888144-25888163 | None:intergenic | 30.0% | |
| CTTAGTCCTTGAAAAAAATC+GGG | + | chr1.3:25887535-25887554 | MS.gene65499:intron | 30.0% | |
| GATCATAAAATGCCTAAGTT+TGG | + | chr1.3:25887995-25888014 | MS.gene65499:CDS | 30.0% | |
| GTTAAACCTAGATTGAAAAG+AGG | + | chr1.3:25888723-25888742 | MS.gene65499:intron | 30.0% | |
| TAGTAAAGATGTTCATGGTT+GGG | + | chr1.3:25887038-25887057 | MS.gene65499:CDS | 30.0% | |
| TATCGTTGAGAAAAAAAACC+AGG | - | chr1.3:25887624-25887643 | None:intergenic | 30.0% | |
| TCTACAGACATCACATAATT+TGG | + | chr1.3:25886198-25886217 | MS.gene65499:intron | 30.0% | |
| TGCTTAACATTTGCAAATTC+TGG | - | chr1.3:25888085-25888104 | None:intergenic | 30.0% | |
| TGTTTCAAACTATGCAATTC+AGG | - | chr1.3:25886946-25886965 | None:intergenic | 30.0% | |
| TTAACAAGGTAACTGAATCA+TGG | - | chr1.3:25886114-25886133 | None:intergenic | 30.0% | |
| TTTATGAAAGTGATGTAGGA+AGG | - | chr1.3:25889067-25889086 | None:intergenic | 30.0% | |
| TTTCTATAGGTTGTTGAAGA+TGG | + | chr1.3:25887836-25887855 | MS.gene65499:intron | 30.0% | |
| ! | AACAGATAAGTAATTTGCCA+AGG | + | chr1.3:25886962-25886981 | MS.gene65499:CDS | 30.0% |
| ! | AACTTTCCTCTTTTCAATCT+AGG | - | chr1.3:25888732-25888751 | None:intergenic | 30.0% |
| ! | AGTCAATAGTTTGTCATTCT+TGG | + | chr1.3:25888667-25888686 | MS.gene65499:intron | 30.0% |
| ! | ATCTTAACTCTTAAGGCATT+AGG | - | chr1.3:25887402-25887421 | None:intergenic | 30.0% |
| ! | CTATTTTACAATTCTCTTCG+AGG | + | chr1.3:25886289-25886308 | MS.gene65499:intron | 30.0% |
| ! | CTCTTAGTGCTAATTTTAGA+TGG | + | chr1.3:25886449-25886468 | MS.gene65499:intron | 30.0% |
| ! | GTAGAAGGAAAAAGTTTTCA+GGG | - | chr1.3:25886756-25886775 | None:intergenic | 30.0% |
| ! | GTCTACTAAAACAAGGTATT+AGG | + | chr1.3:25886535-25886554 | MS.gene65499:intron | 30.0% |
| ! | GTCTTTTATGTGATCTTTTG+TGG | + | chr1.3:25887007-25887026 | MS.gene65499:CDS | 30.0% |
| ! | TGCCTTAAGAGTTAAGATTT+TGG | + | chr1.3:25887404-25887423 | MS.gene65499:intron | 30.0% |
| ! | TTCCATAGGTTGCTTTAATA+AGG | - | chr1.3:25886041-25886060 | None:intergenic | 30.0% |
| !! | ATGTTGGGTTCAATTTTGAT+TGG | + | chr1.3:25887314-25887333 | MS.gene65499:intron | 30.0% |
| !!! | AAATGCCTAAGTTTGGTTTT+AGG | + | chr1.3:25888002-25888021 | MS.gene65499:CDS | 30.0% |
| !!! | TATTTTCAGAAGGCATTTCT+TGG | + | chr1.3:25889266-25889285 | MS.gene65499:intron | 30.0% |
| !!! | TTTCCAAACTTTGTTTTCCA+CGG | - | chr1.3:25886699-25886718 | None:intergenic | 30.0% |
| !!! | TTTTAGAACCCTATTTTCAC+AGG | - | chr1.3:25888768-25888787 | None:intergenic | 30.0% |
| AACGACTTAGAGAGTTGAAA+CGG | - | chr1.3:25885281-25885300 | None:intergenic | 35.0% | |
| AACGACTTAGAGAGTTGAAA+TGG | - | chr1.3:25885281-25885300 | None:intergenic | 35.0% | |
| AATAGGTTGCTTGATGTTAG+AGG | + | chr1.3:25884854-25884873 | MS.gene65499:CDS | 35.0% | |
| ACCAATCTATATCCACTTTG+TGG | + | chr1.3:25885446-25885465 | MS.gene65499:intron | 35.0% | |
| AGATTGTTTCAACTGTTTGC+CGG | + | chr1.3:25886870-25886889 | MS.gene65499:CDS | 35.0% | |
| AGTAAAGATGTTCATGGTTG+GGG | + | chr1.3:25887039-25887058 | MS.gene65499:CDS | 35.0% | |
| ATCTATATCCACTTTGTGGA+AGG | + | chr1.3:25885450-25885469 | MS.gene65499:intron | 35.0% | |
| CAACCATGAACATCTTTACT+AGG | - | chr1.3:25887039-25887058 | None:intergenic | 35.0% | |
| CAAGAGGAGATTCAATGTAA+GGG | + | chr1.3:25886831-25886850 | MS.gene65499:CDS | 35.0% | |
| CATGCTCAAATAGGCTTAAT+AGG | - | chr1.3:25886627-25886646 | None:intergenic | 35.0% | |
| CCTTGCAAAACTCATCATTT+AGG | - | chr1.3:25888308-25888327 | None:intergenic | 35.0% | |
| CTAGTAAAGATGTTCATGGT+TGG | + | chr1.3:25887037-25887056 | MS.gene65499:CDS | 35.0% | |
| CTATTAAGCCTATTTGAGCA+TGG | + | chr1.3:25886625-25886644 | MS.gene65499:CDS | 35.0% | |
| GAACATGAATGTTGTTCCAT+AGG | - | chr1.3:25886055-25886074 | None:intergenic | 35.0% | |
| GATCCTAGTAAAGATGTTCA+TGG | + | chr1.3:25887033-25887052 | MS.gene65499:CDS | 35.0% | |
| GATTATGTCTAATGAGGTGT+CGG | - | chr1.3:25886371-25886390 | None:intergenic | 35.0% | |
| GTTACATTCAAGGGGATATA+AGG | + | chr1.3:25885136-25885155 | MS.gene65499:intron | 35.0% | |
| TCAAACTCTCCACAGTAATT+AGG | - | chr1.3:25887908-25887927 | None:intergenic | 35.0% | |
| TCACATAAAAGACCAGTTTC+AGG | - | chr1.3:25887000-25887019 | None:intergenic | 35.0% | |
| TCCACAAAGTGGATATAGAT+TGG | - | chr1.3:25885450-25885469 | None:intergenic | 35.0% | |
| TGAATGAAAAGATGTCTCTC+TGG | + | chr1.3:25888824-25888843 | MS.gene65499:intron | 35.0% | |
| TTTAGATTTCCGGTCCATTA+AGG | - | chr1.3:25888881-25888900 | None:intergenic | 35.0% | |
| ! | AAATGATGAGTTTTGCAAGG+AGG | + | chr1.3:25888308-25888327 | MS.gene65499:intron | 35.0% |
| ! | ATTTAGAACTTTGTCCCTTG+AGG | + | chr1.3:25886320-25886339 | MS.gene65499:intron | 35.0% |
| ! | ATTTTTCTCAGCGACCAAAT+CGG | - | chr1.3:25887506-25887525 | None:intergenic | 35.0% |
| ! | CCTAAATGATGAGTTTTGCA+AGG | + | chr1.3:25888305-25888324 | MS.gene65499:intron | 35.0% |
| ! | CGTAGAAGGAAAAAGTTTTC+AGG | - | chr1.3:25886757-25886776 | None:intergenic | 35.0% |
| ! | CGTGGTGTTTCATTTACTTT+TGG | + | chr1.3:25887072-25887091 | MS.gene65499:CDS | 35.0% |
| ! | CTAAGAAAACCTTAATGGAC+CGG | + | chr1.3:25888869-25888888 | MS.gene65499:intron | 35.0% |
| ! | GATTTATGGAAGCACATTCA+TGG | - | chr1.3:25886786-25886805 | None:intergenic | 35.0% |
| ! | TATGGCCATGTTTTTCTATG+TGG | + | chr1.3:25885078-25885097 | MS.gene65499:intron | 35.0% |
| ! | TCAAAACTAAGACTCTGAGA+AGG | - | chr1.3:25886427-25886446 | None:intergenic | 35.0% |
| ! | TTAGGCATTTTATGATCCAC+AGG | - | chr1.3:25887992-25888011 | None:intergenic | 35.0% |
| ! | TTTTCTGCTCCTAATTACTG+TGG | + | chr1.3:25887896-25887915 | MS.gene65499:CDS | 35.0% |
| !! | ATGTGCAAATTTGCTAAGAG+TGG | - | chr1.3:25885223-25885242 | None:intergenic | 35.0% |
| !! | GAAAACTTTTTCCTTCTACG+AGG | + | chr1.3:25886757-25886776 | MS.gene65499:CDS | 35.0% |
| !! | TGTGCAAATTTGCTAAGAGT+GGG | - | chr1.3:25885222-25885241 | None:intergenic | 35.0% |
| !!! | TAGTTGCCCGATTTTTTTCA+AGG | - | chr1.3:25887544-25887563 | None:intergenic | 35.0% |
| !!! | TTAGGTGTCGCTAATTTTCT+TGG | + | chr1.3:25887672-25887691 | MS.gene65499:intron | 35.0% |
| AAACAGGTTCAGCTTTCAGA+GGG | + | chr1.3:25884887-25884906 | MS.gene65499:CDS | 40.0% | |
| AAGAACAAGTAGTTGGAACG+TGG | - | chr1.3:25886661-25886680 | None:intergenic | 40.0% | |
| AGGGTAGTGATAAGATGGTT+GGG | + | chr1.3:25885187-25885206 | MS.gene65499:intron | 40.0% | |
| ATTCATGGTTTCCTCGTAGA+AGG | - | chr1.3:25886771-25886790 | None:intergenic | 40.0% | |
| CATTCAAGGGGATATAAGGT+TGG | + | chr1.3:25885140-25885159 | MS.gene65499:intron | 40.0% | |
| CGTTCCAACTACTTGTTCTT+AGG | + | chr1.3:25886661-25886680 | MS.gene65499:CDS | 40.0% | |
| CTTGTTCTTAGGTGACTATG+TGG | + | chr1.3:25886672-25886691 | MS.gene65499:CDS | 40.0% | |
| GAATCCGTAGACACGATTTA+TGG | - | chr1.3:25886800-25886819 | None:intergenic | 40.0% | |
| GCAAGAGGAGATTCAATGTA+AGG | + | chr1.3:25886830-25886849 | MS.gene65499:CDS | 40.0% | |
| GCAATTGCTCGTACTATGTT+GGG | - | chr1.3:25885340-25885359 | None:intergenic | 40.0% | |
| GCCTCAAGTTCCAACAAATT+AGG | - | chr1.3:25884962-25884981 | None:intergenic | 40.0% | |
| GCTTCCATAAATCGTGTCTA+CGG | + | chr1.3:25886793-25886812 | MS.gene65499:CDS | 40.0% | |
| GGAGATTCAATGTAAGGGTA+TGG | + | chr1.3:25886836-25886855 | MS.gene65499:CDS | 40.0% | |
| GGTACAAGAAACAAAGAGAC+AGG | + | chr1.3:25888606-25888625 | MS.gene65499:intron | 40.0% | |
| GTCACCTAAGAACAAGTAGT+TGG | - | chr1.3:25886668-25886687 | None:intergenic | 40.0% | |
| GTGCTCCTAAAACCAAACTT+AGG | - | chr1.3:25888010-25888029 | None:intergenic | 40.0% | |
| GTTCAGATCTCTTGTGGAAT+CGG | + | chr1.3:25887430-25887449 | MS.gene65499:intron | 40.0% | |
| TGAAAGTGATGTAGGAAGGT+TGG | - | chr1.3:25889063-25889082 | None:intergenic | 40.0% | |
| TGAAGTGACGCATAAGAAAG+AGG | - | chr1.3:25889024-25889043 | None:intergenic | 40.0% | |
| TTAAGCCTATTTGAGCATGG+TGG | + | chr1.3:25886628-25886647 | MS.gene65499:CDS | 40.0% | |
| TTACGAGGGTAGTGATAAGA+TGG | + | chr1.3:25885182-25885201 | MS.gene65499:intron | 40.0% | |
| TTGATGTTAGAGGAAGACCT+GGG | + | chr1.3:25884864-25884883 | MS.gene65499:CDS | 40.0% | |
| TTGTGTGTGCAAGTTTACGA+GGG | + | chr1.3:25885168-25885187 | MS.gene65499:intron | 40.0% | |
| ! | AAGGGGATATAAGGTTGGTT+TGG | + | chr1.3:25885145-25885164 | MS.gene65499:intron | 40.0% |
| ! | AGAAATCAAGCAGCTTTGTG+TGG | + | chr1.3:25884910-25884929 | MS.gene65499:CDS | 40.0% |
| ! | CTTGAAGCAGCCTAATTTGT+TGG | + | chr1.3:25884949-25884968 | MS.gene65499:CDS | 40.0% |
| ! | GAGGCACCAATTAAGATATG+TGG | + | chr1.3:25884977-25884996 | MS.gene65499:CDS | 40.0% |
| ! | TAGGAGCACAACTTCATTCA+AGG | + | chr1.3:25888021-25888040 | MS.gene65499:CDS | 40.0% |
| ! | TTATCCTTAGTCGGAAGCAT+AGG | + | chr1.3:25888691-25888710 | MS.gene65499:intron | 40.0% |
| ! | TTTTTCTCAGCGACCAAATC+GGG | - | chr1.3:25887505-25887524 | None:intergenic | 40.0% |
| !! | CTTGATTTGTAGAGCTCATC+AGG | + | chr1.3:25887137-25887156 | MS.gene65499:CDS | 40.0% |
| !! | GCCTAATTTGTTGGAACTTG+AGG | + | chr1.3:25884958-25884977 | MS.gene65499:CDS | 40.0% |
| !! | GTGCAAATTTGCTAAGAGTG+GGG | - | chr1.3:25885221-25885240 | None:intergenic | 40.0% |
| !! | TTTTCAGAAGCACGGTTTGT+TGG | + | chr1.3:25885858-25885877 | MS.gene65499:intron | 40.0% |
| AACAAGTAGTTGGAACGTGG+AGG | - | chr1.3:25886658-25886677 | None:intergenic | 45.0% | |
| ACAAGTAGTTGGAACGTGGA+GGG | - | chr1.3:25886657-25886676 | None:intergenic | 45.0% | |
| ACCCAACATGGTCTCGAAAT+TGG | - | chr1.3:25887303-25887322 | None:intergenic | 45.0% | |
| ACCCAATTTCGAGACCATGT+TGG | + | chr1.3:25887298-25887317 | MS.gene65499:intron | 45.0% | |
| AGCGCGAAACCTGTGAAAAT+AGG | + | chr1.3:25888756-25888775 | MS.gene65499:intron | 45.0% | |
| ATGGAACGAAGGGTTCTTGA+TGG | + | chr1.3:25884824-25884843 | MS.gene65499:CDS | 45.0% | |
| ATTGACCAAGGGAATGTTGG+AGG | - | chr1.3:25887474-25887493 | None:intergenic | 45.0% | |
| CCAAGTGAAGTTCCTGAAAC+TGG | + | chr1.3:25886985-25887004 | MS.gene65499:CDS | 45.0% | |
| CCAGGAAAACTTCATCCTTG+AGG | - | chr1.3:25887606-25887625 | None:intergenic | 45.0% | |
| CCAGTTTCAGGAACTTCACT+TGG | - | chr1.3:25886988-25887007 | None:intergenic | 45.0% | |
| CCCAACATGGTCTCGAAATT+GGG | - | chr1.3:25887302-25887321 | None:intergenic | 45.0% | |
| CCCAATTTCGAGACCATGTT+GGG | + | chr1.3:25887299-25887318 | MS.gene65499:intron | 45.0% | |
| CTAACCTATGCTTCCGACTA+AGG | - | chr1.3:25888698-25888717 | None:intergenic | 45.0% | |
| CTCTTGTGGAATCGGATCAT+TGG | + | chr1.3:25887438-25887457 | MS.gene65499:intron | 45.0% | |
| CTTGATGTTAGAGGAAGACC+TGG | + | chr1.3:25884863-25884882 | MS.gene65499:CDS | 45.0% | |
| GAAACAGGTTCAGCTTTCAG+AGG | + | chr1.3:25884886-25884905 | MS.gene65499:CDS | 45.0% | |
| GAGGGTAGTGATAAGATGGT+TGG | + | chr1.3:25885186-25885205 | MS.gene65499:intron | 45.0% | |
| GATTCTACGACGAATGCAAG+AGG | + | chr1.3:25886815-25886834 | MS.gene65499:CDS | 45.0% | |
| GCAAGGAGGATTACTCTCAT+TGG | + | chr1.3:25888322-25888341 | MS.gene65499:intron | 45.0% | |
| GCGCGAAACCTGTGAAAATA+GGG | + | chr1.3:25888757-25888776 | MS.gene65499:intron | 45.0% | |
| GGAATCCACCATGCTCAAAT+AGG | - | chr1.3:25886636-25886655 | None:intergenic | 45.0% | |
| GGACCGTGGAAAACAAAGTT+TGG | + | chr1.3:25886693-25886712 | MS.gene65499:CDS | 45.0% | |
| GGCAATTGCTCGTACTATGT+TGG | - | chr1.3:25885341-25885360 | None:intergenic | 45.0% | |
| GGGTAGTGATAAGATGGTTG+GGG | + | chr1.3:25885188-25885207 | MS.gene65499:intron | 45.0% | |
| GTGGAGAGTTTGACAATGCT+GGG | + | chr1.3:25887915-25887934 | MS.gene65499:CDS | 45.0% | |
| GTTGTGTGTGCAAGTTTACG+AGG | + | chr1.3:25885167-25885186 | MS.gene65499:intron | 45.0% | |
| GTTTGACCTTGGAACCTCAA+GGG | - | chr1.3:25886337-25886356 | None:intergenic | 45.0% | |
| TATCCACTTTGTGGAAGGCT+TGG | + | chr1.3:25885455-25885474 | MS.gene65499:intron | 45.0% | |
| TCAATCCAACAGACCCGATT+TGG | + | chr1.3:25887489-25887508 | MS.gene65499:intron | 45.0% | |
| TGGAGAGTTTGACAATGCTG+GGG | + | chr1.3:25887916-25887935 | MS.gene65499:CDS | 45.0% | |
| TGGATGGTTCAGATCTCTTG+TGG | + | chr1.3:25887424-25887443 | MS.gene65499:intron | 45.0% | |
| TGGATTGACCAAGGGAATGT+TGG | - | chr1.3:25887477-25887496 | None:intergenic | 45.0% | |
| TGGTTACTCTCTGTTGCTAC+TGG | + | chr1.3:25885963-25885982 | MS.gene65499:intron | 45.0% | |
| TGTCTACTCTATAGGCCTCA+AGG | + | chr1.3:25887588-25887607 | MS.gene65499:intron | 45.0% | |
| TGTGGAGAGTTTGACAATGC+TGG | + | chr1.3:25887914-25887933 | MS.gene65499:CDS | 45.0% | |
| TTACCAAGCCTTCCACAAAG+TGG | - | chr1.3:25885461-25885480 | None:intergenic | 45.0% | |
| ! | CCTCAAGGATGAAGTTTTCC+TGG | + | chr1.3:25887603-25887622 | MS.gene65499:intron | 45.0% |
| ! | TCTCTGTTGCTACTGGTTAG+TGG | + | chr1.3:25885970-25885989 | MS.gene65499:intron | 45.0% |
| !!! | TAAATCATTAATTATATTTT+TGG | - | chr1.3:25886161-25886180 | None:intergenic | 5.0% |
| !!! | TATTTTATTTTTTTCTTAAA+GGG | + | chr1.3:25886227-25886246 | MS.gene65499:intron | 5.0% |
| !!! | TTATTTTATTTTTTTCTTAA+AGG | + | chr1.3:25886226-25886245 | MS.gene65499:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+AGG | + | chr1.3:25886013-25886032 | MS.gene65499:intron | 5.0% |
| CTTTGTCCCTTGAGGTTCCA+AGG | + | chr1.3:25886328-25886347 | MS.gene65499:intron | 50.0% | |
| GAAAGCTGAACCTGTTTCCC+AGG | - | chr1.3:25884884-25884903 | None:intergenic | 50.0% | |
| GGGTCTGTTGGATTGACCAA+GGG | - | chr1.3:25887485-25887504 | None:intergenic | 50.0% | |
| GGTTTGACCTTGGAACCTCA+AGG | - | chr1.3:25886338-25886357 | None:intergenic | 50.0% | |
| TAGAGGAAGACCTGGGAAAC+AGG | + | chr1.3:25884871-25884890 | MS.gene65499:CDS | 50.0% | |
| TCAGGAACTTCACTTGGCCT+TGG | - | chr1.3:25886982-25887001 | None:intergenic | 50.0% | |
| TGTTGCCTCCAACATTCCCT+TGG | + | chr1.3:25887466-25887485 | MS.gene65499:intron | 50.0% | |
| TTAGGTGACTATGTGGACCG+TGG | + | chr1.3:25886679-25886698 | MS.gene65499:CDS | 50.0% | |
| TTTCAACTGTTTGCCGGTCG+CGG | + | chr1.3:25886876-25886895 | MS.gene65499:CDS | 50.0% | |
| ! | GGTTGGGGTGTTAATGAACG+TGG | + | chr1.3:25887054-25887073 | MS.gene65499:CDS | 50.0% |
| !! | CTCGGTGTTAGGTTTGACCT+TGG | - | chr1.3:25886348-25886367 | None:intergenic | 50.0% |
| !! | TGTCTAATGAGGTGTCGGCT+CGG | - | chr1.3:25886366-25886385 | None:intergenic | 50.0% |
| AGCGACCAAATCGGGTCTGT+TGG | - | chr1.3:25887497-25887516 | None:intergenic | 55.0% | |
| CGGGTCTGTTGGATTGACCA+AGG | - | chr1.3:25887486-25887505 | None:intergenic | 55.0% | |
| GTACGAGCAATTGCCCAGCT+AGG | + | chr1.3:25885346-25885365 | MS.gene65499:intron | 55.0% | |
| TCATCGATGATAGCCGCGAC+CGG | - | chr1.3:25886892-25886911 | None:intergenic | 55.0% | |
| ACGCTCGAGCATAGCCTAGC+TGG | - | chr1.3:25885363-25885382 | None:intergenic | 60.0% | |
| CGCTCGAGCATAGCCTAGCT+GGG | - | chr1.3:25885362-25885381 | None:intergenic | 60.0% | |
| !! | TGAGGTGTCGGCTCGGTGTT+AGG | - | chr1.3:25886359-25886378 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 25884824 | 25889310 | 25884824 | ID=MS.gene65499 |
| chr1.3 | mRNA | 25884824 | 25889310 | 25884824 | ID=MS.gene65499.t1;Parent=MS.gene65499 |
| chr1.3 | exon | 25884824 | 25884998 | 25884824 | ID=MS.gene65499.t1.exon1;Parent=MS.gene65499.t1 |
| chr1.3 | CDS | 25884824 | 25884998 | 25884824 | ID=cds.MS.gene65499.t1;Parent=MS.gene65499.t1 |
| chr1.3 | exon | 25886599 | 25887158 | 25886599 | ID=MS.gene65499.t1.exon2;Parent=MS.gene65499.t1 |
| chr1.3 | CDS | 25886599 | 25887158 | 25886599 | ID=cds.MS.gene65499.t1;Parent=MS.gene65499.t1 |
| chr1.3 | exon | 25887845 | 25888042 | 25887845 | ID=MS.gene65499.t1.exon3;Parent=MS.gene65499.t1 |
| chr1.3 | CDS | 25887845 | 25888042 | 25887845 | ID=cds.MS.gene65499.t1;Parent=MS.gene65499.t1 |
| chr1.3 | exon | 25889275 | 25889310 | 25889275 | ID=MS.gene65499.t1.exon4;Parent=MS.gene65499.t1 |
| chr1.3 | CDS | 25889275 | 25889310 | 25889275 | ID=cds.MS.gene65499.t1;Parent=MS.gene65499.t1 |
| Gene Sequence |
| Protein sequence |
