AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65549

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65549.t1 MTR_6g033415 91.593 452 12 2 1 451 1 427 0.0 834
MS.gene65549.t1 MTR_7g100790 49.383 486 177 11 1 450 1 453 5.30e-121 361
MS.gene65549.t1 MTR_1g095740 48.024 506 166 17 1 451 1 464 2.11e-113 342
MS.gene65549.t1 MTR_1g066800 43.205 493 195 14 1 450 1 451 2.93e-104 318
MS.gene65549.t1 MTR_1g066800 42.771 498 195 14 1 450 1 456 1.20e-103 317
MS.gene65549.t1 MTR_4g087420 30.769 507 247 18 1 436 1 474 2.51e-50 179
MS.gene65549.t1 MTR_8g024540 31.712 514 244 23 1 435 1 486 1.45e-41 155
MS.gene65549.t1 MTR_4g050480 35.897 351 169 8 99 440 89 392 2.22e-41 152
MS.gene65549.t1 MTR_4g050480 35.897 351 169 8 99 440 88 391 2.44e-41 152
MS.gene65549.t1 MTR_3g096568 41.204 216 67 7 168 369 47 216 2.71e-35 133
MS.gene65549.t1 MTR_3g104570 39.336 211 94 3 104 307 88 271 8.07e-35 135
MS.gene65549.t1 MTR_0047s0040 29.298 413 222 10 3 413 4 348 1.06e-34 134
MS.gene65549.t1 MTR_3g020990 51.701 147 37 2 120 265 103 216 1.49e-34 129
MS.gene65549.t1 MTR_2g015370 36.041 197 92 6 106 300 62 226 1.32e-32 125
MS.gene65549.t1 MTR_1g007920 33.025 324 171 7 100 413 90 377 1.41e-32 129
MS.gene65549.t1 MTR_1g007920 33.025 324 171 7 100 413 115 402 2.26e-32 129
MS.gene65549.t1 MTR_1g051810 31.765 425 201 15 1 415 1 346 8.42e-31 122
MS.gene65549.t1 MTR_7g114700 28.825 451 210 16 1 413 1 378 2.08e-30 122
MS.gene65549.t1 MTR_2g078210 32.500 200 105 4 101 299 8 178 8.61e-30 117
MS.gene65549.t1 MTR_2g078210 32.500 200 105 4 101 299 68 238 9.89e-30 118
MS.gene65549.t1 MTR_3g091560 36.943 314 135 10 1 293 1 272 2.74e-27 113
MS.gene65549.t1 MTR_1g103070 53.086 81 38 0 92 172 121 201 3.30e-20 93.2
MS.gene65549.t1 MTR_2g100740 33.684 190 94 5 1 179 1 169 3.82e-19 89.0
MS.gene65549.t1 MTR_8g102400 40.426 141 62 3 57 189 74 200 1.10e-18 88.2
MS.gene65549.t1 MTR_1g101330 57.746 71 30 0 106 176 114 184 1.23e-18 88.2
MS.gene65549.t1 MTR_0019s0070 48.352 91 42 1 98 183 103 193 1.29e-18 88.2
MS.gene65549.t1 MTR_2g099780 33.742 326 155 9 105 421 76 349 3.27e-18 87.0
MS.gene65549.t1 MTR_4g108140 48.515 101 44 2 98 197 91 184 3.45e-18 87.4
MS.gene65549.t1 MTR_4g108140 48.515 101 44 2 98 197 90 183 3.47e-18 87.4
MS.gene65549.t1 MTR_8g014580 41.500 200 96 4 1 179 1 200 4.67e-18 86.3
MS.gene65549.t1 MTR_8g074730 53.425 73 34 0 104 176 68 140 2.21e-17 79.0
MS.gene65549.t1 MTR_8g017570 30.154 325 186 6 105 421 88 379 2.82e-16 80.9
MS.gene65549.t1 MTR_1g066820 56.250 80 28 3 377 450 44 122 1.64e-15 73.6
MS.gene65549.t1 MTR_7g114870 50.000 74 37 0 109 182 108 181 2.46e-15 77.8
MS.gene65549.t1 MTR_0259s0040 80.000 60 10 1 29 88 31 88 2.56e-15 75.9
MS.gene65549.t1 MTR_2g078480 33.182 220 100 7 168 387 47 219 8.68e-15 73.9
MS.gene65549.t1 MTR_1g041430 35.000 140 73 4 21 159 41 163 2.20e-14 75.1
MS.gene65549.t1 MTR_4g102840 32.335 167 90 3 1 165 1 146 6.97e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65549.t1 AT5G03040 45.214 491 186 12 1 450 1 449 2.48e-114 343
MS.gene65549.t1 AT5G03040 45.214 491 186 12 1 450 1 449 2.48e-114 343
MS.gene65549.t1 AT5G03040 45.214 491 186 12 1 450 1 449 2.48e-114 343
MS.gene65549.t1 AT3G52290 48.172 465 180 10 1 450 1 419 9.34e-110 331
MS.gene65549.t1 AT3G09710 42.469 478 227 13 1 450 1 458 1.28e-86 273
MS.gene65549.t1 AT3G09710 42.050 478 215 13 1 450 1 444 1.06e-83 265
MS.gene65549.t1 AT2G26410 40.496 363 145 13 92 443 132 434 1.75e-63 214
MS.gene65549.t1 AT2G26410 40.496 363 145 13 92 443 132 434 1.75e-63 214
MS.gene65549.t1 AT2G26180 38.006 321 149 8 105 413 82 364 4.46e-43 157
MS.gene65549.t1 AT3G59690 29.480 519 214 20 1 434 1 452 9.00e-41 152
MS.gene65549.t1 AT3G59690 29.480 519 214 20 1 434 1 452 9.00e-41 152
MS.gene65549.t1 AT3G22190 41.981 212 93 5 100 309 81 264 6.59e-40 148
MS.gene65549.t1 AT3G22190 41.981 212 93 5 100 309 81 264 6.59e-40 148
MS.gene65549.t1 AT3G22190 41.981 212 93 5 100 309 81 264 6.59e-40 148
MS.gene65549.t1 AT3G22190 41.981 212 93 5 100 309 81 264 6.59e-40 148
MS.gene65549.t1 AT4G00820 28.512 484 276 14 7 438 11 476 2.14e-36 140
MS.gene65549.t1 AT2G43680 33.056 360 147 17 101 436 317 606 5.08e-36 141
MS.gene65549.t1 AT2G43680 33.056 360 147 17 101 436 316 605 5.30e-36 141
MS.gene65549.t1 AT2G43680 33.056 360 147 17 101 436 316 605 5.30e-36 141
MS.gene65549.t1 AT2G43680 33.056 360 147 17 101 436 316 605 5.30e-36 141
MS.gene65549.t1 AT2G43680 33.056 360 147 17 101 436 316 605 5.30e-36 141
MS.gene65549.t1 AT2G33990 35.047 214 110 3 106 319 46 230 4.01e-35 131
MS.gene65549.t1 AT3G49260 33.183 443 216 16 1 413 1 393 2.52e-34 134
MS.gene65549.t1 AT1G01110 28.427 496 269 19 1 437 1 469 8.33e-34 133
MS.gene65549.t1 AT3G49260 36.909 317 161 10 1 298 1 297 9.90e-34 132
MS.gene65549.t1 AT3G49260 36.909 317 161 10 1 298 1 297 9.90e-34 132
MS.gene65549.t1 AT3G49260 36.909 317 161 10 1 298 1 297 9.90e-34 132
MS.gene65549.t1 AT1G72670 31.169 308 158 6 1 300 1 262 5.59e-33 129
MS.gene65549.t1 AT3G15050 32.203 236 126 6 102 332 45 251 3.62e-30 118
MS.gene65549.t1 AT5G13460 26.950 423 219 17 1 413 1 343 4.31e-28 116
MS.gene65549.t1 AT4G10640 28.475 446 236 19 1 433 1 376 2.75e-26 110
MS.gene65549.t1 AT1G17480 32.432 185 85 4 104 286 91 237 1.33e-20 93.6
MS.gene65549.t1 AT4G14750 59.701 67 27 0 106 172 104 170 1.38e-19 90.5
MS.gene65549.t1 AT1G18840 37.190 121 71 1 103 223 105 220 2.01e-19 91.3
MS.gene65549.t1 AT1G18840 37.190 121 71 1 103 223 105 220 2.01e-19 91.3
MS.gene65549.t1 AT1G18840 37.190 121 71 1 103 223 105 220 2.01e-19 91.3
MS.gene65549.t1 AT4G14750 59.701 67 27 0 106 172 163 229 2.20e-19 90.5
MS.gene65549.t1 AT4G14750 59.701 67 27 0 106 172 163 229 2.33e-19 90.5
MS.gene65549.t1 AT5G03960 35.926 270 136 6 1 263 1 240 2.94e-19 89.7
MS.gene65549.t1 AT5G03960 35.926 270 136 6 1 263 1 240 2.94e-19 89.7
MS.gene65549.t1 AT5G03960 36.296 270 134 7 1 263 1 239 1.32e-18 87.8
MS.gene65549.t1 AT3G16490 45.087 173 89 2 1 170 1 170 6.31e-18 85.9
MS.gene65549.t1 AT3G51380 54.286 70 32 0 101 170 31 100 1.90e-17 78.2
MS.gene65549.t1 AT5G07240 58.730 63 26 0 104 166 103 165 1.96e-15 78.2
MS.gene65549.t1 AT5G07240 58.730 63 26 0 104 166 149 211 2.21e-15 78.6
MS.gene65549.t1 AT4G29150 43.750 96 54 0 96 191 120 215 4.94e-15 77.0
MS.gene65549.t1 AT5G62070 61.404 57 22 0 105 161 115 171 1.46e-14 75.5
MS.gene65549.t1 AT3G49380 32.418 182 108 4 1 173 1 176 2.71e-14 74.3
MS.gene65549.t1 AT4G23060 48.649 74 38 0 107 180 167 240 3.18e-14 75.1
MS.gene65549.t1 AT1G74690 50.000 68 34 0 107 174 113 180 7.36e-14 74.3
MS.gene65549.t1 AT1G51960 52.113 71 33 1 104 173 96 166 1.22e-13 72.4
MS.gene65549.t1 AT1G14380 40.741 81 44 1 107 187 94 170 1.67e-12 70.1
MS.gene65549.t1 AT1G14380 40.741 81 44 1 107 187 94 170 1.67e-12 70.1
MS.gene65549.t1 AT1G14380 40.741 81 44 1 107 187 94 170 1.67e-12 70.1
MS.gene65549.t1 AT1G14380 40.741 81 44 1 107 187 94 170 1.76e-12 70.1
MS.gene65549.t1 AT1G14380 40.741 81 44 1 107 187 94 170 1.76e-12 70.1
MS.gene65549.t1 AT1G14380 40.741 81 44 1 107 187 94 170 1.76e-12 70.1
MS.gene65549.t1 AT1G14380 40.741 81 44 1 107 187 94 170 1.92e-12 69.7
MS.gene65549.t1 AT5G35670 31.313 198 86 5 106 296 159 313 2.41e-12 68.9

Find 95 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCAAACCAAACATTTA+TGG 0.169081 6.4:+5917766 MS.gene65549:CDS
TTTGCAACTGCTGCCGCGGC+AGG 0.189741 6.4:+5916714 MS.gene65549:CDS
GACAGCGTTCCGCGGATATT+TGG 0.239230 6.4:+5916842 MS.gene65549:CDS
CGGACATTCGAATTCGTCTT+TGG 0.254195 6.4:-5917375 None:intergenic
GGCAGCTGTTGCTGCGGCTC+AGG 0.282011 6.4:+5916737 MS.gene65549:CDS
AATTCTTCCTTAGTCTTTGT+AGG 0.325914 6.4:-5916801 None:intergenic
TGCAACTGCTGCCGCGGCAG+GGG 0.333388 6.4:+5916716 MS.gene65549:CDS
GTCAATTTAACGTCTTCTAT+TGG 0.336181 6.4:-5916648 None:intergenic
CATCCCCAGTGAGGATTGTT+TGG 0.337151 6.4:-5917791 None:intergenic
CGAAGATATAGCAGCATTGC+AGG 0.343941 6.4:+5918082 MS.gene65549:CDS
TTGCAACTGCTGCCGCGGCA+GGG 0.354153 6.4:+5916715 MS.gene65549:CDS
TGCGGCTCAGGCTGCTTTCG+AGG 0.357501 6.4:+5916749 MS.gene65549:CDS
TACAAAGACTAAGGAAGAAT+TGG 0.359377 6.4:+5916803 MS.gene65549:CDS
TACAACAGGTTGGAGAAGAT+TGG 0.364807 6.4:+5917536 MS.gene65549:CDS
TGGTATAAAATTTGTACAAC+AGG 0.376872 6.4:+5917522 MS.gene65549:CDS
TAGAGTTTGCATGCATCTTA+AGG 0.386769 6.4:-5917329 None:intergenic
TCGAATGTCCGAGGATAATC+AGG 0.395298 6.4:+5917387 MS.gene65549:CDS
TGTTTGGATCCATAAATGTT+TGG 0.400710 6.4:-5917775 None:intergenic
CGCAACATGCATTGTAGAAA+AGG 0.401938 6.4:-5917491 None:intergenic
GTTTGATGGTCTTGCCTTTG+AGG 0.405483 6.4:-5917996 None:intergenic
TTATCATAAAGAATATAATT+CGG 0.409728 6.4:-5917911 None:intergenic
AACTCTTATATTTCCACCTT+AGG 0.418842 6.4:-5918295 None:intergenic
TCTTTCCCTGCTTCTCCGGT+TGG 0.432725 6.4:+5918250 MS.gene65549:CDS
CTTCAATTTCTGCGAGGAAG+AGG 0.433391 6.4:+5918224 MS.gene65549:CDS
TTAGTCTTTGTAGGATAATG+AGG 0.439171 6.4:-5916792 None:intergenic
GGCCTATTCATTCTCACATC+AGG 0.441857 6.4:+5917642 MS.gene65549:CDS
CTTGCCTTTGAGGAAGTTGA+AGG 0.449613 6.4:-5917986 None:intergenic
ATCTTCGATACCGTTCAGAT+TGG 0.449859 6.4:-5918066 None:intergenic
TCTTCGATACCGTTCAGATT+GGG 0.450074 6.4:-5918065 None:intergenic
GTTACGAGCCTTGAGAGGTT+TGG 0.450589 6.4:+5917252 MS.gene65549:CDS
CTTGAACCAACCGGAGAAGC+AGG 0.451320 6.4:-5918256 None:intergenic
GAATTACAAATGGGAAAGAA+AGG 0.463694 6.4:+5915892 None:intergenic
AGCAACAGCTGCCCCTGCCG+CGG 0.466320 6.4:-5916727 None:intergenic
ACAACAGGTTGGAGAAGATT+GGG 0.469622 6.4:+5917537 MS.gene65549:CDS
GCTTTCTTTCCCTGCTTCTC+CGG 0.473746 6.4:+5918246 MS.gene65549:CDS
ATGCATGTTGCGAATTTGTC+TGG 0.480768 6.4:+5917502 MS.gene65549:CDS
GCCGGTGTTTCCTAGTTACA+TGG 0.484527 6.4:+5918141 MS.gene65549:CDS
TCTTATATTTCCACCTTAGG+TGG 0.489664 6.4:-5918292 None:intergenic
CTAGTGAGTGCCATGTAACT+AGG 0.490410 6.4:-5918151 None:intergenic
AATTTAACGTCTTCTATTGG+TGG 0.502359 6.4:-5916645 None:intergenic
AGTTGAAGGAGAATTGTGTA+TGG 0.503963 6.4:-5917972 None:intergenic
AAATGGGAAAGAAAGGGAGT+TGG 0.513991 6.4:+5915899 None:intergenic
CAAACAATCCTCACTGGGGA+TGG 0.517079 6.4:+5917792 MS.gene65549:CDS
CTTCAAAAGAGAGAGGGCAT+TGG 0.519119 6.4:+5917621 MS.gene65549:CDS
TCATTATCCTACAAAGACTA+AGG 0.519850 6.4:+5916794 MS.gene65549:CDS
ATAAAATTTGTACAACAGGT+TGG 0.519882 6.4:+5917526 MS.gene65549:CDS
TACAAGGACAATCTGTAAAA+CGG 0.522962 6.4:+5917293 MS.gene65549:CDS
TGGATCCAAACAATCCTCAC+TGG 0.524386 6.4:+5917786 MS.gene65549:CDS
GAGTGCCGTCTTGAACCAAC+CGG 0.524726 6.4:-5918265 None:intergenic
CAACCTCACCAAACCTCTCA+AGG 0.525908 6.4:-5917260 None:intergenic
GCAAGACCATCAAACTCAAA+AGG 0.527499 6.4:+5918004 MS.gene65549:CDS
TTCTCCTTCAACTTCCTCAA+AGG 0.538302 6.4:+5917982 MS.gene65549:CDS
TAGTGAAAAGGACTTAGAAG+TGG 0.543476 6.4:+5916596 MS.gene65549:CDS
ATCCTCACTGGGGATGGAGT+TGG 0.552928 6.4:+5917798 MS.gene65549:CDS
AATTACAAATGGGAAAGAAA+GGG 0.554917 6.4:+5915893 None:intergenic
GATGGAGTTGGTTAGAGAGA+TGG 0.557483 6.4:+5917810 MS.gene65549:CDS
GGATGCAAGCTTGCAGTCGA+AGG 0.561881 6.4:+5917558 MS.gene65549:CDS
TTCCTCGCAGAAATTGAAGA+TGG 0.562596 6.4:-5918220 None:intergenic
TCTAGCAAGATTGCAGTCAC+AGG 0.562836 6.4:+5917348 MS.gene65549:CDS
ACGGCACTCTGGTCCACCTA+AGG 0.569009 6.4:+5918279 MS.gene65549:CDS
ATGGATGGCGACTCGACCAT+GGG 0.572438 6.4:+5917829 MS.gene65549:CDS
TGTTACTCTAACAGCAAACA+TGG 0.572451 6.4:+5917729 MS.gene65549:intron
GATAACAAACCTTCCCCAGT+TGG 0.573359 6.4:+5917929 MS.gene65549:CDS
GATGGATGGCGACTCGACCA+TGG 0.574503 6.4:+5917828 MS.gene65549:CDS
TAGCAGCATTGCAGGATCAT+CGG 0.575373 6.4:+5918090 MS.gene65549:CDS
GCACTCTGGTCCACCTAAGG+TGG 0.578255 6.4:+5918282 MS.gene65549:CDS
AGCTGCCTTCAAAAGAGAGA+GGG 0.582684 6.4:+5917615 MS.gene65549:CDS
GGCAGGGGCAGCTGTTGCTG+CGG 0.585664 6.4:+5916731 MS.gene65549:CDS
TCGAAGCAAAACTGTTGCAA+AGG 0.587443 6.4:+5917587 MS.gene65549:CDS
TTGAAGAGCCTGATTATCCT+CGG 0.592027 6.4:-5917395 None:intergenic
GGATCCAAACAATCCTCACT+GGG 0.596104 6.4:+5917787 MS.gene65549:CDS
TACCTGATGTGAGAATGAAT+AGG 0.596462 6.4:-5917644 None:intergenic
GTTGGTTCAAGACGGCACTC+TGG 0.603753 6.4:+5918268 MS.gene65549:CDS
AGGATAATCAGGCTCTTCAA+CGG 0.604236 6.4:+5917398 MS.gene65549:CDS
CTTCTCCGGTTGGTTCAAGA+CGG 0.604624 6.4:+5918260 MS.gene65549:CDS
TCATGATTCCAGAAAAGACA+AGG 0.609399 6.4:+5915948 MS.gene65549:CDS
AAGATTCAGACAGCGTTCCG+CGG 0.615353 6.4:+5916834 MS.gene65549:CDS
TGCAAGCGTTGAAAGCTCGC+CGG 0.617551 6.4:+5918123 MS.gene65549:CDS
GAGCCTTGAGAGGTTTGGTG+AGG 0.618158 6.4:+5917257 MS.gene65549:CDS
AGAGCGTTACGAGCCTTGAG+AGG 0.620550 6.4:+5917247 MS.gene65549:CDS
AGGTTGAAGACAATGGTACA+AGG 0.621615 6.4:+5917277 MS.gene65549:CDS
AAGCTGCCTTCAAAAGAGAG+AGG 0.625961 6.4:+5917614 MS.gene65549:CDS
TTGAACCAACCGGAGAAGCA+GGG 0.626362 6.4:-5918255 None:intergenic
GGCACTCACTAGTTCAGCAA+AGG 0.627738 6.4:+5918162 MS.gene65549:CDS
TTTGGTGAGGTTGAAGACAA+TGG 0.633377 6.4:+5917270 MS.gene65549:CDS
GAGTTGGTTAGAGAGATGGA+TGG 0.646898 6.4:+5917814 MS.gene65549:CDS
TGTTTAGCGCCCAATCTGAA+CGG 0.650668 6.4:+5918056 MS.gene65549:CDS
GCCATGTAACTAGGAAACAC+CGG 0.650779 6.4:-5918142 None:intergenic
GCAGAAATTGAAGATGGTGA+CGG 0.653887 6.4:-5918214 None:intergenic
CACCATCTTCAATTTCTGCG+AGG 0.673030 6.4:+5918218 MS.gene65549:CDS
AAGACGAATTCGAATGTCCG+AGG 0.677375 6.4:+5917378 MS.gene65549:CDS
AGAAGACGTTAAATTGACTG+AGG 0.696100 6.4:+5916653 MS.gene65549:CDS
AACCAACTCCATCCCCAGTG+AGG 0.702900 6.4:-5917800 None:intergenic
ACAATCATACCAAATATCCG+CGG 0.712674 6.4:-5916851 None:intergenic
GATCCAAACAATCCTCACTG+GGG 0.786047 6.4:+5917788 MS.gene65549:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATCATAAAGAATATAATT+CGG - chr6.4:5917914-5917933 None:intergenic 10.0%
!!! ATAGTCTTTTTTAGAAAATT+AGG + chr6.4:5917093-5917112 MS.gene65549:intron 15.0%
!! TAAGAAAAAAAGTAGTGAAA+AGG + chr6.4:5916584-5916603 MS.gene65549:CDS 20.0%
!!! AATCGATTTTTATGATTTGA+TGG + chr6.4:5916121-5916140 MS.gene65549:intron 20.0%
! AAACCATTATATATGCTTAC+AGG - chr6.4:5917217-5917236 None:intergenic 25.0%
! ATAAAATTTGTACAACAGGT+TGG + chr6.4:5917526-5917545 MS.gene65549:CDS 25.0%
! TATATATGCTTACAGGTAAT+TGG - chr6.4:5917210-5917229 None:intergenic 25.0%
! TCTCAAATTATTATCGTTGT+CGG + chr6.4:5916384-5916403 MS.gene65549:intron 25.0%
! TGGTATAAAATTTGTACAAC+AGG + chr6.4:5917522-5917541 MS.gene65549:CDS 25.0%
! TTACCTGTAAGCATATATAA+TGG + chr6.4:5917211-5917230 MS.gene65549:intron 25.0%
! TTATATTGAACCGAAATTTG+AGG - chr6.4:5917679-5917698 None:intergenic 25.0%
!! AAGCATATATAATGGTTTTC+AGG + chr6.4:5917219-5917238 MS.gene65549:intron 25.0%
!! GTGATTCATAATGATGTTTT+CGG - chr6.4:5917858-5917877 None:intergenic 25.0%
!! TTAAAAAACCTTGTCTTTTC+TGG - chr6.4:5915959-5915978 None:intergenic 25.0%
!!! TGAAGTTTTTTGCATTATTC+TGG - chr6.4:5918194-5918213 None:intergenic 25.0%
AACCATTTATGTGTGTTCAT+TGG + chr6.4:5916536-5916555 MS.gene65549:intron 30.0%
AATTTAACGTCTTCTATTGG+TGG - chr6.4:5916648-5916667 None:intergenic 30.0%
ACCATTTATGTGTGTTCATT+GGG + chr6.4:5916537-5916556 MS.gene65549:intron 30.0%
ATCTGCAAACCAAACATTTA+TGG + chr6.4:5917766-5917785 MS.gene65549:CDS 30.0%
CAAACGTTTCAGAAAATTTC+AGG + chr6.4:5917137-5917156 MS.gene65549:intron 30.0%
CACACATAAATGGTTTGAAT+TGG - chr6.4:5916531-5916550 None:intergenic 30.0%
GAATTATGTCATTGATCTGA+TGG + chr6.4:5916245-5916264 MS.gene65549:intron 30.0%
GTAATAGCTTGACTATCATT+TGG - chr6.4:5916901-5916920 None:intergenic 30.0%
GTCAATTTAACGTCTTCTAT+TGG - chr6.4:5916651-5916670 None:intergenic 30.0%
TACAAAGACTAAGGAAGAAT+TGG + chr6.4:5916803-5916822 MS.gene65549:CDS 30.0%
TACAAGGACAATCTGTAAAA+CGG + chr6.4:5917293-5917312 MS.gene65549:CDS 30.0%
TCATTATCCTACAAAGACTA+AGG + chr6.4:5916794-5916813 MS.gene65549:CDS 30.0%
TGTTTGGATCCATAAATGTT+TGG - chr6.4:5917778-5917797 None:intergenic 30.0%
! AATTCTTCCTTAGTCTTTGT+AGG - chr6.4:5916804-5916823 None:intergenic 30.0%
! CTTCATATTGAAGGTGTATT+TGG + chr6.4:5916963-5916982 MS.gene65549:intron 30.0%
! TTAGTCTTTGTAGGATAATG+AGG - chr6.4:5916795-5916814 None:intergenic 30.0%
ACAATCATACCAAATATCCG+CGG - chr6.4:5916854-5916873 None:intergenic 35.0%
ACCGATACTACCTCAAATTT+CGG + chr6.4:5917666-5917685 MS.gene65549:intron 35.0%
AGAAGACGTTAAATTGACTG+AGG + chr6.4:5916653-5916672 MS.gene65549:CDS 35.0%
AGTTGAAGGAGAATTGTGTA+TGG - chr6.4:5917975-5917994 None:intergenic 35.0%
CGTGTTTCATAGGTAATGAT+TGG + chr6.4:5916422-5916441 MS.gene65549:intron 35.0%
TACCTGATGTGAGAATGAAT+AGG - chr6.4:5917647-5917666 None:intergenic 35.0%
TAGAGTTTGCATGCATCTTA+AGG - chr6.4:5917332-5917351 None:intergenic 35.0%
TAGTGAAAAGGACTTAGAAG+TGG + chr6.4:5916596-5916615 MS.gene65549:CDS 35.0%
TCATGATTCCAGAAAAGACA+AGG + chr6.4:5915948-5915967 MS.gene65549:CDS 35.0%
TCCCAATGAACACACATAAA+TGG - chr6.4:5916541-5916560 None:intergenic 35.0%
TGATGGTTATCTATGAAGCA+CGG + chr6.4:5916138-5916157 MS.gene65549:intron 35.0%
TGTCAGTGCTACATGAAAAA+AGG - chr6.4:5916943-5916962 None:intergenic 35.0%
TGTTACTCTAACAGCAAACA+TGG + chr6.4:5917729-5917748 MS.gene65549:intron 35.0%
! ACCGAAATTTGAGGTAGTAT+CGG - chr6.4:5917670-5917689 None:intergenic 35.0%
!! ATTGAAGGTGTATTTGGTGT+CGG + chr6.4:5916969-5916988 MS.gene65549:intron 35.0%
!! TGGTTTGCCTTCTTGATTTT+TGG - chr6.4:5917955-5917974 None:intergenic 35.0%
!!! CTTTCACCTTTTGAGTTTGA+TGG - chr6.4:5918013-5918032 None:intergenic 35.0%
!!! TTCTTGATTTTTGGCCAACT+GGG - chr6.4:5917946-5917965 None:intergenic 35.0%
AATTAGGTGTCTCCTTGTGT+CGG + chr6.4:5916171-5916190 MS.gene65549:intron 40.0%
AGGATAATCAGGCTCTTCAA+CGG + chr6.4:5917398-5917417 MS.gene65549:CDS 40.0%
AGGTTGAAGACAATGGTACA+AGG + chr6.4:5917277-5917296 MS.gene65549:CDS 40.0%
ATCTTCGATACCGTTCAGAT+TGG - chr6.4:5918069-5918088 None:intergenic 40.0%
ATGCATGTTGCGAATTTGTC+TGG + chr6.4:5917502-5917521 MS.gene65549:CDS 40.0%
CAGTTGGCCAAAAATCAAGA+AGG + chr6.4:5917945-5917964 MS.gene65549:CDS 40.0%
CGCAACATGCATTGTAGAAA+AGG - chr6.4:5917494-5917513 None:intergenic 40.0%
GCAAGACCATCAAACTCAAA+AGG + chr6.4:5918004-5918023 MS.gene65549:CDS 40.0%
GCAGAAATTGAAGATGGTGA+CGG - chr6.4:5918217-5918236 None:intergenic 40.0%
TCGAAGCAAAACTGTTGCAA+AGG + chr6.4:5917587-5917606 MS.gene65549:CDS 40.0%
TCTTCGATACCGTTCAGATT+GGG - chr6.4:5918068-5918087 None:intergenic 40.0%
TGTAATCATCGATGTCGTGT+CGG - chr6.4:5916223-5916242 None:intergenic 40.0%
TGTAATCATCGATGTCGTGT+TGG - chr6.4:5916223-5916242 None:intergenic 40.0%
TTCCTCGCAGAAATTGAAGA+TGG - chr6.4:5918223-5918242 None:intergenic 40.0%
TTCTCCTTCAACTTCCTCAA+AGG + chr6.4:5917982-5918001 MS.gene65549:CDS 40.0%
TTGAAGAGCCTGATTATCCT+CGG - chr6.4:5917398-5917417 None:intergenic 40.0%
TTTAGCGTTCGTGTCTACAT+CGG + chr6.4:5917064-5917083 MS.gene65549:intron 40.0%
TTTGGTGAGGTTGAAGACAA+TGG + chr6.4:5917270-5917289 MS.gene65549:CDS 40.0%
! ACAACAGGTTGGAGAAGATT+GGG + chr6.4:5917537-5917556 MS.gene65549:CDS 40.0%
! GCACTGACACTTCATATTGA+AGG + chr6.4:5916954-5916973 MS.gene65549:intron 40.0%
! TACAACAGGTTGGAGAAGAT+TGG + chr6.4:5917536-5917555 MS.gene65549:CDS 40.0%
!!! CTTCTTGATTTTTGGCCAAC+TGG - chr6.4:5917947-5917966 None:intergenic 40.0%
!!! TCTTGATTTTTGGCCAACTG+GGG - chr6.4:5917945-5917964 None:intergenic 40.0%
AAGACGAATTCGAATGTCCG+AGG + chr6.4:5917378-5917397 MS.gene65549:CDS 45.0%
AAGCTGCCTTCAAAAGAGAG+AGG + chr6.4:5917614-5917633 MS.gene65549:CDS 45.0%
ACAAGGAGACACCTAATTCG+AGG - chr6.4:5916169-5916188 None:intergenic 45.0%
AGCTGCCTTCAAAAGAGAGA+GGG + chr6.4:5917615-5917634 MS.gene65549:CDS 45.0%
CACCATCTTCAATTTCTGCG+AGG + chr6.4:5918218-5918237 MS.gene65549:CDS 45.0%
CGAAGATATAGCAGCATTGC+AGG + chr6.4:5918082-5918101 MS.gene65549:CDS 45.0%
CGGACATTCGAATTCGTCTT+TGG - chr6.4:5917378-5917397 None:intergenic 45.0%
CTAGTGAGTGCCATGTAACT+AGG - chr6.4:5918154-5918173 None:intergenic 45.0%
CTTCAATTTCTGCGAGGAAG+AGG + chr6.4:5918224-5918243 MS.gene65549:CDS 45.0%
GATAACAAACCTTCCCCAGT+TGG + chr6.4:5917929-5917948 MS.gene65549:CDS 45.0%
GATCCAAACAATCCTCACTG+GGG + chr6.4:5917788-5917807 MS.gene65549:CDS 45.0%
GCACAGATACTCCTCGAATT+AGG + chr6.4:5916279-5916298 MS.gene65549:intron 45.0%
GCCATGTAACTAGGAAACAC+CGG - chr6.4:5918145-5918164 None:intergenic 45.0%
GGATCCAAACAATCCTCACT+GGG + chr6.4:5917787-5917806 MS.gene65549:CDS 45.0%
GGCCTATTCATTCTCACATC+AGG + chr6.4:5917642-5917661 MS.gene65549:CDS 45.0%
TAGCAGCATTGCAGGATCAT+CGG + chr6.4:5918090-5918109 MS.gene65549:CDS 45.0%
TCGAATGTCCGAGGATAATC+AGG + chr6.4:5917387-5917406 MS.gene65549:CDS 45.0%
TCTAGCAAGATTGCAGTCAC+AGG + chr6.4:5917348-5917367 MS.gene65549:CDS 45.0%
TGGATCCAAACAATCCTCAC+TGG + chr6.4:5917786-5917805 MS.gene65549:CDS 45.0%
TGTTTAGCGCCCAATCTGAA+CGG + chr6.4:5918056-5918075 MS.gene65549:CDS 45.0%
! ATGATGTTTTCGGCTTCCCA+TGG - chr6.4:5917848-5917867 None:intergenic 45.0%
! CAATGCCCTCTCTCTTTTGA+AGG - chr6.4:5917623-5917642 None:intergenic 45.0%
! CTTCAAAAGAGAGAGGGCAT+TGG + chr6.4:5917621-5917640 MS.gene65549:CDS 45.0%
! CTTGCCTTTGAGGAAGTTGA+AGG - chr6.4:5917989-5918008 None:intergenic 45.0%
! GAGTTGGTTAGAGAGATGGA+TGG + chr6.4:5917814-5917833 MS.gene65549:CDS 45.0%
! GATGGAGTTGGTTAGAGAGA+TGG + chr6.4:5917810-5917829 MS.gene65549:CDS 45.0%
! GTTTGATGGTCTTGCCTTTG+AGG - chr6.4:5917999-5918018 None:intergenic 45.0%
!!! TTGTTTTTTAATTATTTATT+TGG + chr6.4:5916875-5916894 MS.gene65549:intron 5.0%
AAGATTCAGACAGCGTTCCG+CGG + chr6.4:5916834-5916853 MS.gene65549:CDS 50.0%
CAAACAATCCTCACTGGGGA+TGG + chr6.4:5917792-5917811 MS.gene65549:CDS 50.0%
CAACCTCACCAAACCTCTCA+AGG - chr6.4:5917263-5917282 None:intergenic 50.0%
CATCCCCAGTGAGGATTGTT+TGG - chr6.4:5917794-5917813 None:intergenic 50.0%
GCCGGTGTTTCCTAGTTACA+TGG + chr6.4:5918141-5918160 MS.gene65549:CDS 50.0%
GCTTTCTTTCCCTGCTTCTC+CGG + chr6.4:5918246-5918265 MS.gene65549:CDS 50.0%
GGCACTCACTAGTTCAGCAA+AGG + chr6.4:5918162-5918181 MS.gene65549:CDS 50.0%
GTGTCGTGCTCGTGTTTCAT+AGG + chr6.4:5916412-5916431 MS.gene65549:intron 50.0%
GTTACGAGCCTTGAGAGGTT+TGG + chr6.4:5917252-5917271 MS.gene65549:CDS 50.0%
TTGAACCAACCGGAGAAGCA+GGG - chr6.4:5918258-5918277 None:intergenic 50.0%
! CATCGATGTCGTGTTGGTGT+CGG - chr6.4:5916341-5916360 None:intergenic 50.0%
! CTTCTCCGGTTGGTTCAAGA+CGG + chr6.4:5918260-5918279 MS.gene65549:CDS 50.0%
!! TATTTGGTGTCGGACACACG+TGG + chr6.4:5916979-5916998 MS.gene65549:intron 50.0%
!!! GATTTTTGGCCAACTGGGGA+AGG - chr6.4:5917941-5917960 None:intergenic 50.0%
AACCAACTCCATCCCCAGTG+AGG - chr6.4:5917803-5917822 None:intergenic 55.0%
ATCCTCACTGGGGATGGAGT+TGG + chr6.4:5917798-5917817 MS.gene65549:CDS 55.0%
ATGGATGGCGACTCGACCAT+GGG + chr6.4:5917829-5917848 MS.gene65549:CDS 55.0%
CTTGAACCAACCGGAGAAGC+AGG - chr6.4:5918259-5918278 None:intergenic 55.0%
GACAGCGTTCCGCGGATATT+TGG + chr6.4:5916842-5916861 MS.gene65549:CDS 55.0%
GCACGGACACTCCTCGAATT+AGG + chr6.4:5916155-5916174 MS.gene65549:intron 55.0%
GGATGCAAGCTTGCAGTCGA+AGG + chr6.4:5917558-5917577 MS.gene65549:CDS 55.0%
TCCTTGTGTCGAACACGCGT+CGG + chr6.4:5916182-5916201 MS.gene65549:intron 55.0%
TCTTTCCCTGCTTCTCCGGT+TGG + chr6.4:5918250-5918269 MS.gene65549:CDS 55.0%
! AGAGCGTTACGAGCCTTGAG+AGG + chr6.4:5917247-5917266 MS.gene65549:CDS 55.0%
! CATCGATGTCGTGTCGGTGT+CGG - chr6.4:5916217-5916236 None:intergenic 55.0%
! GAGTGCCGTCTTGAACCAAC+CGG - chr6.4:5918268-5918287 None:intergenic 55.0%
! GTTGGTTCAAGACGGCACTC+TGG + chr6.4:5918268-5918287 MS.gene65549:CDS 55.0%
! TGCTTTTGCAACTGCTGCCG+CGG + chr6.4:5916710-5916729 MS.gene65549:CDS 55.0%
!! GAGCCTTGAGAGGTTTGGTG+AGG + chr6.4:5917257-5917276 MS.gene65549:CDS 55.0%
!! TGCAAGCGTTGAAAGCTCGC+CGG + chr6.4:5918123-5918142 MS.gene65549:CDS 55.0%
ACCGACGCGTGTTCGACACA+AGG - chr6.4:5916186-5916205 None:intergenic 60.0%
ACGGCACTCTGGTCCACCTA+AGG + chr6.4:5918279-5918298 MS.gene65549:CDS 60.0%
GATGGATGGCGACTCGACCA+TGG + chr6.4:5917828-5917847 MS.gene65549:CDS 60.0%
GCACTCTGGTCCACCTAAGG+TGG + chr6.4:5918282-5918301 MS.gene65549:CDS 60.0%
TCCTTGTGTCGGACACGCGT+CGG + chr6.4:5916306-5916325 MS.gene65549:intron 60.0%
ACCGACGCGTGTCCGACACA+AGG - chr6.4:5916310-5916329 None:intergenic 65.0%
TTGCAACTGCTGCCGCGGCA+GGG + chr6.4:5916715-5916734 MS.gene65549:CDS 65.0%
TTTGCAACTGCTGCCGCGGC+AGG + chr6.4:5916714-5916733 MS.gene65549:CDS 65.0%
! TGCGGCTCAGGCTGCTTTCG+AGG + chr6.4:5916749-5916768 MS.gene65549:CDS 65.0%
AGCAACAGCTGCCCCTGCCG+CGG - chr6.4:5916730-5916749 None:intergenic 70.0%
GGCAGCTGTTGCTGCGGCTC+AGG + chr6.4:5916737-5916756 MS.gene65549:CDS 70.0%
GGCAGGGGCAGCTGTTGCTG+CGG + chr6.4:5916731-5916750 MS.gene65549:CDS 70.0%
TGCAACTGCTGCCGCGGCAG+GGG + chr6.4:5916716-5916735 MS.gene65549:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 5915901 5918312 5915901 ID=MS.gene65549
chr6.4 mRNA 5915901 5918312 5915901 ID=MS.gene65549.t1;Parent=MS.gene65549
chr6.4 exon 5915901 5915969 5915901 ID=MS.gene65549.t1.exon1;Parent=MS.gene65549.t1
chr6.4 CDS 5915901 5915969 5915901 ID=cds.MS.gene65549.t1;Parent=MS.gene65549.t1
chr6.4 exon 5916570 5916863 5916570 ID=MS.gene65549.t1.exon2;Parent=MS.gene65549.t1
chr6.4 CDS 5916570 5916863 5916570 ID=cds.MS.gene65549.t1;Parent=MS.gene65549.t1
chr6.4 exon 5917241 5917663 5917241 ID=MS.gene65549.t1.exon3;Parent=MS.gene65549.t1
chr6.4 CDS 5917241 5917663 5917241 ID=cds.MS.gene65549.t1;Parent=MS.gene65549.t1
chr6.4 exon 5917743 5918312 5917743 ID=MS.gene65549.t1.exon4;Parent=MS.gene65549.t1
chr6.4 CDS 5917743 5918312 5917743 ID=cds.MS.gene65549.t1;Parent=MS.gene65549.t1
Gene Sequence

>MS.gene65549

ATGGGAAAGAAAGGGAGTTGGTTTTCTGCAGTGAAGAAAGTTTTTAGTCATGATTCCAGAAAAGACAAGGTTTTTTAATTATTATATGCTACAAAAATATTTTTTTTTAGTGTTTAATTTTGATACATGTAAAATTGTTTAGAAATTTTGATTTGTTTACACTGTCAACAAATCACAATCATTCATATTTGTTAATTTTAAAGTAGTTATGATTAAAGTCAATCGATTTTTATGATTTGATGGTTATCTATGAAGCACGGACACTCCTCGAATTAGGTGTCTCCTTGTGTCGAACACGCGTCGGTGTCAGACACCGACACCGACACGACATCGATGATTACACTGAATTATGTCATTGATCTGATGGTTTTCTATGAAGCACAGATACTCCTCGAATTAGGTGTCTCCTTGTGTCGGACACGCGTCGGTGTCAGACACCGACACCAACACGACATCGATGATTACACTGAATTATGTCATTTTTCTCAAATTATTATCGTTGTCGGCGTCTGTGTCGTGCTCGTGTTTCATAGGTAATGATTGGTTGATAGTGTAAAAAAACAATTACACTAGCTGTGTATATAAATTAAATCTAAATTTTCAATTGATTTTAAATCATAGCAGTCTCCAATTCAAACCATTTATGTGTGTTCATTGGGAAAAAAACAGAAAAGCAAGAAATCTAAGAAAAAAAGTAGTGAAAAGGACTTAGAAGTGGAATCAAAAGAAGTACAAGTTGCTGTTCCACCAATAGAAGACGTTAAATTGACTGAGGCAGAGAATGAACAAAATAAACAAGCAATGTCTCTTGCTTTTGCAACTGCTGCCGCGGCAGGGGCAGCTGTTGCTGCGGCTCAGGCTGCTTTCGAGGTTGTTCGTCTCACGAGTATGCCTCATTATCCTACAAAGACTAAGGAAGAATTGGCAGCTATCAAGATTCAGACAGCGTTCCGCGGATATTTGGTATGATTGTCTTGTTTTTTAATTATTTATTTGGCCAAATGATAGTCAAGCTATTACTTACATTAATCAAATCATGCCTTTTTTCATGTAGCACTGACACTTCATATTGAAGGTGTATTTGGTGTCGGACACACGTGGTTAAACTCAATTATATCATCTTTTTGAATTATTACAAGTGACATGTCAGTGTTAATGTAGTGTTTAGCGTTCGTGTCTACATCGGTTATTCATAGTCTTTTTTAGAAAATTAGGATGTTATGCAATAATTGTATTCAAACGTTTCAGAAAATTTCAGGAAGTATATTTTATTCTGAATATAGATTGTATGTATATATAGTTGTTTCCAATTACCTGTAAGCATATATAATGGTTTTCAGGCGAGAAGAGCGTTACGAGCCTTGAGAGGTTTGGTGAGGTTGAAGACAATGGTACAAGGACAATCTGTAAAACGGCAAGCAGACAGCACCTTAAGATGCATGCAAACTCTAGCAAGATTGCAGTCACAGGTTCGCCAAAGACGAATTCGAATGTCCGAGGATAATCAGGCTCTTCAACGGCAACTACAACAGAAACACGAAAAAGAACTTGTGAAGTTGCAAGCTGCTGTAAGCATTTTGTGTATATTTTCCTTTTCTACAATGCATGTTGCGAATTTGTCTGGTATAAAATTTGTACAACAGGTTGGAGAAGATTGGGATGCAAGCTTGCAGTCGAAGGAACAAATCGAAGCAAAACTGTTGCAAAGGCAAGAAGCTGCCTTCAAAAGAGAGAGGGCATTGGCCTATTCATTCTCACATCAGGTACCGATACTACCTCAAATTTCGGTTCAATATAAGTGATTTTGAATGTGTAAATAACTATAATGTGTTACTCTAACAGCAAACATGGAAGAATTCTTCAAAATCTGCAAACCAAACATTTATGGATCCAAACAATCCTCACTGGGGATGGAGTTGGTTAGAGAGATGGATGGCGACTCGACCATGGGAAGCCGAAAACATCATTATGAATCACAATGATCATACATCTGTTAAGAGTTCATCGAAGCCGAATTATATTCTTTATGATAACAAACCTTCCCCAGTTGGCCAAAAATCAAGAAGGCAAACCATACACAATTCTCCTTCAACTTCCTCAAAGGCAAGACCATCAAACTCAAAAGGTGAAAGTAGTATTGATGACTCAAGAAGCATGTTTAGCGCCCAATCTGAACGGTATCGAAGATATAGCAGCATTGCAGGATCATCGGTTAGAGACGATGCAAGCGTTGAAAGCTCGCCGGTGTTTCCTAGTTACATGGCACTCACTAGTTCAGCAAAGGCAAAGTCCAGAATAATGCAAAAAACTTCACCGTCACCATCTTCAATTTCTGCGAGGAAGAGGCTTTCTTTCCCTGCTTCTCCGGTTGGTTCAAGACGGCACTCTGGTCCACCTAAGGTGGAAATATAA
Protein sequence

>MS.gene65549.t1

MGKKGSWFSAVKKVFSHDSRKDKKSKKSKKKSSEKDLEVESKEVQVAVPPIEDVKLTEAENEQNKQAMSLAFATAAAAGAAVAAAQAAFEVVRLTSMPHYPTKTKEELAAIKIQTAFRGYLARRALRALRGLVRLKTMVQGQSVKRQADSTLRCMQTLARLQSQVRQRRIRMSEDNQALQRQLQQKHEKELVKLQAAVSILCIFSFSTMHVANLSGIKFVQQVGEDWDASLQSKEQIEAKLLQRQEAAFKRERALAYSFSHQQTWKNSSKSANQTFMDPNNPHWGWSWLERWMATRPWEAENIIMNHNDHTSVKSSSKPNYILYDNKPSPVGQKSRRQTIHNSPSTSSKARPSNSKGESSIDDSRSMFSAQSERYRRYSSIAGSSVRDDASVESSPVFPSYMALTSSAKAKSRIMQKTSPSPSSISARKRLSFPASPVGSRRHSGPPKVEI